Citrus Sinensis ID: 008158
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RX77 | 620 | Nitrate transporter 1.7 O | yes | no | 0.982 | 0.911 | 0.617 | 0.0 | |
| Q9LFX9 | 576 | Nitrate transporter 1.6 O | no | no | 0.984 | 0.982 | 0.575 | 0.0 | |
| Q9CAR9 | 555 | Putative peptide/nitrate | no | no | 0.928 | 0.962 | 0.536 | 1e-161 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.946 | 0.926 | 0.451 | 1e-143 | |
| Q9LV10 | 616 | Probable peptide/nitrate | no | no | 0.951 | 0.887 | 0.458 | 1e-142 | |
| Q944G5 | 636 | Probable peptide/nitrate | no | no | 0.953 | 0.861 | 0.452 | 1e-136 | |
| Q3E8X3 | 559 | Probable peptide/nitrate | no | no | 0.926 | 0.953 | 0.414 | 1e-124 | |
| Q9M817 | 607 | Probable peptide transpor | no | no | 0.940 | 0.891 | 0.398 | 1e-122 | |
| Q8LPL2 | 591 | Probable peptide/nitrate | no | no | 0.923 | 0.898 | 0.400 | 1e-117 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.933 | 0.942 | 0.391 | 1e-116 |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/575 (61%), Positives = 451/575 (78%), Gaps = 10/575 (1%)
Query: 7 QKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVT 66
+K +KKPGGW+A+ +ILGNET ERL +IGLLANFMVYL K +H+ Q AAN++NIW G T
Sbjct: 46 EKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFT 105
Query: 67 NFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCK 126
N PL+GA+ISDTY+GRFKTI FAS A +LG++T+TLTA PQLHP C+ P C
Sbjct: 106 NLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPL--SCG 163
Query: 127 SANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 186
N +Q+GVL++GL LS+G+GGIRPCSIPFGVDQFD T+EGVKG+ SFFNWYY TFTV
Sbjct: 164 GPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTV 223
Query: 187 VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVL 246
V++ITQTV+VYIQD VSW+IGF IPT LM A+++F G K YV V+PEGSIFSGI QV+
Sbjct: 224 VLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVI 283
Query: 247 VAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDG 306
VAA KKR+L LP + D +YDP K VLSKL ++QFR L+KAA++++ +L P+G
Sbjct: 284 VAARKKRKLKLP-AEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVIE-GDLTPEG 341
Query: 307 TPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQ 366
P ++WRLCS+Q+VEEVKCLI+I+PIW+AGIISL +++ QGTFTVSQA+KM+R+LGPKF+
Sbjct: 342 PPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFE 401
Query: 367 IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAG 426
IP G++ VIS++TIG++LPFYD V VP +R+IT H+ GITLLQRIG G++F+I SMIVAG
Sbjct: 402 IPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAG 461
Query: 427 LVERGRR----ASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSI 482
+VER RR + M+ +SVFWL+PQLILMG CEAFNIIGQIEFFN QFP+HM+SI
Sbjct: 462 IVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSI 521
Query: 483 ANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNI 542
ANSL SF +SYLSS L+T+VH + H PDWL +++AG+LDYFY+LIA LG +N+
Sbjct: 522 ANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVNL 581
Query: 543 VYFLYCARRYRYKSG--IQSLEDQNDLELVDPTKQ 575
VYF YCAR YRYK G I+ E+ + V+ T +
Sbjct: 582 VYFWYCARGYRYKVGLPIEDFEEDKSSDDVEMTSK 616
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/577 (57%), Positives = 434/577 (75%), Gaps = 11/577 (1%)
Query: 1 MVGDQKQKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILN 60
+V ++K +KK GGW+A+ +ILGNET E+L +IG+ ANFM+YL +HM A N+
Sbjct: 3 VVENRKILPEKKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYY 62
Query: 61 IWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKP 120
+W G+TNFAPLLGA ISD YIGRFKTI +AS+ +ILG++TVTLTA LPQLHPP C+
Sbjct: 63 LWMGLTNFAPLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPH- 121
Query: 121 PFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWY 180
+C N +QLG+L +GLG LSIG+GGIRPCSIPFGVDQFD T++G+KG+ SFFNWY
Sbjct: 122 -PDECDDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKGVASFFNWY 180
Query: 181 YTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFS 240
Y T T+V++ + TV+VY+Q +VSWVIGF IPT LM A++LF VG + YV V+PEGS+FS
Sbjct: 181 YLTLTMVLIFSHTVVVYLQ-TVSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFS 239
Query: 241 GIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNN 300
GI +V+VAA KKR L + D +Y+PP K VLSKLPLT QF+FL+KAA+I+D
Sbjct: 240 GIARVIVAARKKRDLKISLVD-DGTEEYYEPPVKPGVLSKLPLTDQFKFLDKAAVILDG- 297
Query: 301 ELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRH 360
+L +G P N+WRLCSIQ+VEEVKCLI+++P+W+AGIIS+ +++ Q TF V QA KM+RH
Sbjct: 298 DLTSEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRH 357
Query: 361 LGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSIL 420
+GP F+IP ++ VIS ITIG+W+P Y+ +LVP L ++ K +TLLQR+GIG++F+IL
Sbjct: 358 MGPHFEIPAASITVISYITIGIWVPIYEHLLVPFLWRMRKFR--VTLLQRMGIGIVFAIL 415
Query: 421 SMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMK 480
SM AG VE RR A M+Q+SVFWLA LILMG CE+FN IG IEFFN QFP+HM+
Sbjct: 416 SMFTAGFVEGVRRTRAT--EMTQMSVFWLALPLILMGLCESFNFIGLIEFFNSQFPEHMR 473
Query: 481 SIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGL 540
SIANSL SF A+YLSSLL+T VH V+ HPDWL D+D G+LDYFY+LIA LG +
Sbjct: 474 SIANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYYLIAVLGVV 533
Query: 541 NIVYFLYCARRYRYKSG--IQSLEDQNDLELVDPTKQ 575
N+VYF YCA RY+YK+G I+ ++ L ++P ++
Sbjct: 534 NLVYFWYCAHRYQYKAGSQIEDFNEEKSLLDIEPNQR 570
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAR9|PTR20_ARATH Putative peptide/nitrate transporter At1g69860 OS=Arabidopsis thaliana GN=At1g69860 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 570 bits (1468), Expect = e-161, Method: Compositional matrix adjust.
Identities = 294/548 (53%), Positives = 402/548 (73%), Gaps = 14/548 (2%)
Query: 10 QKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFA 69
Q+KP GWKAMPYI+GNET ERLAT GL+ANFMVY+++EYHM+Q A ++N W +TNFA
Sbjct: 16 QRKPLGWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQAVTLINTWSALTNFA 75
Query: 70 PLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSAN 129
P++GAFISD+Y G+F TI F SIA +LGML +T T+ +P L PP C A GQC +
Sbjct: 76 PIIGAFISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVPNLRPPPC-TADQITGQCIPYS 134
Query: 130 SMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVIL 189
QL VL+ GL LLS+GTGGIR CS+PF +DQFD +T+EG +G SFF+WYYTT T+V L
Sbjct: 135 YSQLYVLLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEGREGSRSFFSWYYTTHTIVQL 194
Query: 190 ITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAA 249
++ T+++Y+Q+++SW IGF IPTVL A++L VG + YV V+PEGS+FSG+ +VLVAA
Sbjct: 195 VSMTLVLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYYVFVKPEGSVFSGVFKVLVAA 254
Query: 250 YKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPV 309
YKKR+ G +D+H + + +KL LT QFRFLNKA ++++N+E +
Sbjct: 255 YKKRKARFTSG-IDYHQPLLETDLQ---SNKLVLTDQFRFLNKAVIVMNNDEAGNE---- 306
Query: 310 NQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHL-GPKFQIP 368
+WR C+++Q+E++K +I IIPI+A+ II +++QQ TFTVSQA+KM+ G + IP
Sbjct: 307 -EWRTCTVRQIEDIKSIISIIPIFASSIIGFLAMNQQQTFTVSQALKMDLQFPGTSYLIP 365
Query: 369 PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLV 428
P ++ VIS++ IG+WLPFY+TVLV + ITK GGI+LLQ++GIG IFSI +M+++G+V
Sbjct: 366 PASITVISLLNIGIWLPFYETVLVRHIENITKQNGGISLLQKVGIGNIFSISTMLISGIV 425
Query: 429 ERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF 488
ER RR L+ + ++SVFWL PQ +LMGF + F I+G EFFNKQ P +M+SI NSLL+
Sbjct: 426 ERKRR-DLSLNGV-KMSVFWLTPQQVLMGFYQVFTIVGLTEFFNKQVPINMRSIGNSLLY 483
Query: 489 CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYC 548
ASYLSS +++IVH VTAR G WLT+DID +LD FY+ IA L LN ++F +C
Sbjct: 484 LGLSLASYLSSAMVSIVHSVTARGGQ-SWLTDDIDKSKLDCFYYFIAALSTLNFIFFFWC 542
Query: 549 ARRYRYKS 556
ARRYRY++
Sbjct: 543 ARRYRYRN 550
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/562 (45%), Positives = 362/562 (64%), Gaps = 18/562 (3%)
Query: 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGA 74
GWK MP+I+GNETFE+L +G +N ++YL ++M +AA ++NI+GG +NF ++ A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 75 FISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLG 134
F+ D+Y GR+KT++FA IA LG + + LTA + LHP +C AK C + Q+
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQC--AKEIGSVCNGPSIGQIM 139
Query: 135 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTV 194
L + LL IG GGIRPC++PFG DQFD T EG +GI SFFNWY+ TFT +++ T+
Sbjct: 140 FLAGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTL 199
Query: 195 LVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRR 254
+VY+Q +VSW IG IP +LM+ I+F G KLYV V+ GS I +V+V A KKRR
Sbjct: 200 IVYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRR 259
Query: 255 LTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRL 314
L P G + Y+ F SKL T QFRFL+K+A+ +++L DG+PV+ W+L
Sbjct: 260 LK-PVGPNE----LYNYIASDFKNSKLGHTEQFRFLDKSAIQTQDDKLNKDGSPVDAWKL 314
Query: 315 CSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGP-KFQIPPGTVG 373
CS+QQVEEVKC+I+++P+W + + + QQ T+T+ Q+++ +R LGP FQIP G+
Sbjct: 315 CSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYT 374
Query: 374 VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRR 433
V M+ + +++P YD VLVP LRK T +GGIT LQR+G G+ I SM+V+ +VE+ RR
Sbjct: 375 VFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRR 434
Query: 434 ASAHLHP----------MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA 483
A P +S +S WL PQL+LMG +A +GQ+EF+ KQFP++M+S A
Sbjct: 435 KVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFA 494
Query: 484 NSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIV 543
SL +C G ASYLS+ L++ VH T WL D++ GRL+YFYFL+AG+ LN+
Sbjct: 495 GSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLNLA 554
Query: 544 YFLYCARRYRYKSGIQSLEDQN 565
YFL + YRYK + +D +
Sbjct: 555 YFLLVSHWYRYKDVVAKDKDMD 576
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust.
Identities = 259/565 (45%), Positives = 357/565 (63%), Gaps = 18/565 (3%)
Query: 4 DQKQKDQKKP--GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNI 61
++ ++QKK GWK MP+I+GNETFE+L IG L+N +VYL +++ +AA I+N
Sbjct: 33 EEDVQNQKKVVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINA 92
Query: 62 WGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPP 121
+ G NF + AF+ DTY GR+KT++ A IA LG + LTA +PQLHP C A
Sbjct: 93 FSGTINFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADS 152
Query: 122 FGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 181
C + Q+ L+MGLG L +G GGIRPC++ FG DQF+ ++ G +GI+SFFNWY+
Sbjct: 153 I--CNGPSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRGIDSFFNWYF 210
Query: 182 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSG 241
TFT +++ T++VY+Q +VSW IG IP VLM A ++F G KLYV ++ GS +G
Sbjct: 211 FTFTFAQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAG 270
Query: 242 IGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNE 301
I QV+ A KKR L P Q + Y PP + SKL T QFRFL+KAA++ ++
Sbjct: 271 IAQVIAVAIKKRGLK-PAKQPWLNLYNYYPPK--YANSKLKYTDQFRFLDKAAILTPEDK 327
Query: 302 LKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHL 361
L+PDG P + W+LC++QQVEEVKC+++++PIW A I +I+QQ T+ V QA++ +R L
Sbjct: 328 LQPDGKPADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRL 387
Query: 362 GP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSIL 420
G F IP T V M + +++ YD VLVP +R+IT + GITLLQRIG G+ F+
Sbjct: 388 GSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATA 447
Query: 421 SMIVAGLVERGRRASAHLHP----------MSQVSVFWLAPQLILMGFCEAFNIIGQIEF 470
S++VAG VE RR A P +S +S WL PQL L G EAF IGQ+EF
Sbjct: 448 SLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEF 507
Query: 471 FNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYF 530
+ KQFP++M+S A S+ + G +SYL S LI VH T +WL D++ GRLD F
Sbjct: 508 YYKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLF 567
Query: 531 YFLIAGLGGLNIVYFLYCARRYRYK 555
YF+IAG+ +N YFL +R YRYK
Sbjct: 568 YFMIAGILAVNFAYFLVMSRWYRYK 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 258/570 (45%), Positives = 360/570 (63%), Gaps = 22/570 (3%)
Query: 2 VGDQKQKDQKK--PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANIL 59
V D +++Q+K GWK MP+I+GNETFE+L IG L+N +VYL +++ +AA I+
Sbjct: 49 VVDSFEEEQRKIVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATII 108
Query: 60 NIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAK 119
N + G NF + AF+ DTY GR+KT++ A IA LG + LTA +P LHP C
Sbjct: 109 NAFSGTINFGTFIAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAIPSLHPVACGNKI 168
Query: 120 PPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 179
C+ + Q+ L+MGLG L +G GGIRPC++ FG DQF+ ++ G KGINSFFNW
Sbjct: 169 ----SCEGPSVGQILFLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKKGINSFFNW 224
Query: 180 YYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIF 239
Y+ TFT +I+ T +VYIQ +VSW IG IP LM A ++F G +LYV V+ GS
Sbjct: 225 YFFTFTFAQIISLTAVVYIQSNVSWTIGLIIPVALMFLACVIFFAGDRLYVKVKASGSPL 284
Query: 240 SGIGQVLVAAYKKRRLT-LPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVD 298
+GI +V+ AA KKR L + Q ++ Y+ P + + L T QFRFL+KAA++
Sbjct: 285 AGIARVIAAAIKKRGLKPVKQPWVN----LYNHIPSNYANTTLKYTDQFRFLDKAAIMTP 340
Query: 299 NNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMN 358
+L DGT + W+LC++QQVEEVKC++++IPIW A I +I+ Q T+ V QA++ +
Sbjct: 341 EEKLNSDGTASDPWKLCTLQQVEEVKCIVRVIPIWFASTIYYLAITIQMTYPVFQALQSD 400
Query: 359 RHLGP-KFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIF 417
R LG F+IP T V M + +++ FYD VLVP+LR++T E GI+LLQRIG G F
Sbjct: 401 RRLGSGGFRIPAATYVVFLMTGMTVFIIFYDRVLVPSLRRVTGLETGISLLQRIGAGFTF 460
Query: 418 SILSMIVAGLVERGRRASAHLHP----------MSQVSVFWLAPQLILMGFCEAFNIIGQ 467
+I+S++V+G +E RR A P +S +S WL PQL L G EAF IGQ
Sbjct: 461 AIMSLLVSGFIEERRRNFALTKPTLGMAPRTGEISSMSALWLIPQLTLAGIAEAFAAIGQ 520
Query: 468 IEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRL 527
+EF+ KQFP++MKS A S+ + G +SYL+S LI+ VH TA +WL D++ +L
Sbjct: 521 MEFYYKQFPENMKSFAGSIFYVGAGVSSYLASFLISTVHRTTAHSPSGNWLAEDLNKAKL 580
Query: 528 DYFYFLIAGLGGLNIVYFLYCARRYRYKSG 557
DYFYF++ GL +N+ YFL AR YRYK G
Sbjct: 581 DYFYFMLTGLMVVNMAYFLLMARWYRYKGG 610
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E8X3|PTR52_ARATH Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 227/547 (41%), Positives = 339/547 (61%), Gaps = 14/547 (2%)
Query: 10 QKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFA 69
+K+ GGW+A+ YI+ NE+FE+LA++ L+ N VYL+ +Y++ N++NIW G N
Sbjct: 15 KKEKGGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNIL 74
Query: 70 PLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSAN 129
L GAF+SD Y+GRF T+ SIA+ +GM LTA LP L P C P
Sbjct: 75 TLAGAFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDACI---DPSNCSNQPA 131
Query: 130 SMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVIL 189
QLGVL GLGLL+IG GG+RPC+I FG DQFD +T +G + +FFNW+Y +FTV ++
Sbjct: 132 KWQLGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFFNWWYFSFTVALV 191
Query: 190 ITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAA 249
I T +VYIQ ++SWVIGF IPT + +I F++G+ Y+ + EGS+F+ I +V+ AA
Sbjct: 192 IALTGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGSVFADIVKVVTAA 251
Query: 250 YKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPV 309
KKR++ + G D P V K H+ RF +KA+++ + NEL DG
Sbjct: 252 CKKRKVKPGSDITFYIGPSNDGSPTTLVRDK----HRLRFFDKASIVTNPNELNEDGNAK 307
Query: 310 NQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGP-KFQIP 368
+WRLCS+QQV+ +KC+ I+P+W GI QQ + + QAM+M++ GP FQ+P
Sbjct: 308 YKWRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQMDKTFGPHNFQVP 367
Query: 369 PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLV 428
G + ++SMIT+ +W+ Y+ V++P +++IT + +TL RI I M I+ MIVAG
Sbjct: 368 AGWMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIEIVM--GIICMIVAGFQ 425
Query: 429 ERGRRASAHLHP--MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL 486
E+ RRASA + +S VS+ L PQ L G EAF+ + +EF + P+HM+++A ++
Sbjct: 426 EKKRRASALKNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTVRMPEHMRAVAGAI 485
Query: 487 LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN-DIDAGRLDYFYFLIAGLGGLNIVYF 545
F S ASY+ +LLI ++ VT + G WL + D++ RL+ ++F+IAG+ N++YF
Sbjct: 486 FFLSSSIASYICTLLINVIDAVTRKEGK-SWLGDKDLNKNRLENYFFIIAGIQVANLLYF 544
Query: 546 LYCARRY 552
A RY
Sbjct: 545 RLFASRY 551
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/560 (39%), Positives = 342/560 (61%), Gaps = 19/560 (3%)
Query: 5 QKQKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGG 64
Q + +K GG MP+I+ NE FE++A+ GLL N ++YL+++Y N+L +W
Sbjct: 14 QTNEGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSA 73
Query: 65 VTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQ 124
+NF PLLGAF+SD+Y+GRF TI+ AS+++ LGM+ + LTA LPQ+ P CD
Sbjct: 74 ASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAG-SH 132
Query: 125 CKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD-EGVKGINSFFNWYYTT 183
C S+ + QL +L L+SIG+GGIRPCS+ FG DQ D + + + + SFF WYY +
Sbjct: 133 CGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYAS 192
Query: 184 FTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIG 243
V +LI T +VYIQ+ + W IGFG+P VLM+ A +LF++ LYV S+F+G+
Sbjct: 193 SAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLA 252
Query: 244 QVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVD-NNEL 302
Q +VAAYKKR+L+LP DHH F K P + + RFLNKA +I + E+
Sbjct: 253 QAIVAAYKKRKLSLP----DHHDSFDCYYHMKDSEIKAP-SQKLRFLNKACLISNREEEI 307
Query: 303 KPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHL- 361
DG +N WRLC+ +VEE+K LIK+IPIW+ GI+ ++ + Q +F + QA M+R L
Sbjct: 308 GSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIM-MSINTSQSSFQLLQATSMDRRLS 366
Query: 362 --GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSI 419
G FQ+P G+ G+ ++I + LW+ YD ++P KI +++ R+G+G+ S
Sbjct: 367 RHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSF 426
Query: 420 LSMIVAGLVERGRRASA-------HLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFN 472
L+M ++ +VE RR A + + + +S WL PQ +L G EA IGQ EFF
Sbjct: 427 LAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFY 486
Query: 473 KQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYF 532
+FP M SIA SL AS L+S+++ V+ +T+R+G W++++I+ G +Y+Y+
Sbjct: 487 TEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYW 546
Query: 533 LIAGLGGLNIVYFLYCARRY 552
++A + +N++Y++ C+ Y
Sbjct: 547 VLAIMSFINVIYYVICSWSY 566
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/557 (40%), Positives = 331/557 (59%), Gaps = 26/557 (4%)
Query: 10 QKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFA 69
++ GG MP+I+ NE FE++A+ GLL N ++YL+ +Y + +L +W TNF
Sbjct: 21 RRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFM 80
Query: 70 PLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSAN 129
PL+GAF+SD+Y+GRF TI AS++++LGM+ + LTA LPQ+ P C C SA
Sbjct: 81 PLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPC--VATAGTNCSSAT 138
Query: 130 SMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD-EGVKGINSFFNWYYTTFTVVI 188
S QL +L L+SIG+GGIRPCS+ FG DQ D + + + + SFF WYY + +V +
Sbjct: 139 SSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVAV 198
Query: 189 LITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVA 248
LI TV+VYIQD + W IGFGIP +LM+ A LF+ LYV + S+F+G+ QV+ A
Sbjct: 199 LIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQVVAA 258
Query: 249 AYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPL---THQFRFLNKAAMIVDNNE-LKP 304
AY KR LTLP DHH D + L L + + RFLNKA I + +E L
Sbjct: 259 AYVKRNLTLP----DHH----DSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDEDLGS 310
Query: 305 DGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPK 364
DG +NQWRLC+ QVE++K L+K+IP+W+ GI+ ++SQ +F + QA M+R L
Sbjct: 311 DGLALNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQN-SFQLLQAKSMDRRLSSN 369
Query: 365 --FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSM 422
FQIP G+ G+ ++I + W+ YD ++P KI + + R+G+G+ S L+M
Sbjct: 370 STFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISFLAM 429
Query: 423 IVAGLVERGRRASA-------HLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF 475
V+ VE RR +A + +S WL PQ +L G EA IGQ EFF +F
Sbjct: 430 AVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFYTEF 489
Query: 476 PDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIA 535
P M SIA SL A+ L+S+++ V +++ G+ W+ ++I+ G DY+Y+++A
Sbjct: 490 PKSMSSIAASLFGLGMAVANILASVILNAVKN-SSKQGNVSWIEDNINKGHYDYYYWVLA 548
Query: 536 GLGGLNIVYFLYCARRY 552
L +N++Y++ C+ Y
Sbjct: 549 ILSFVNVIYYVVCSWSY 565
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/559 (39%), Positives = 329/559 (58%), Gaps = 22/559 (3%)
Query: 9 DQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNF 68
+++K G WKA +ILGNE ERLA G+ N + YL + +AAN + W G
Sbjct: 21 NKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYI 80
Query: 69 APLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKC--DVAKPPFGQCK 126
PL+GAFI+D Y+GR+ TI + GM +TL+A +P L P C D P
Sbjct: 81 TPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHP------ 134
Query: 127 SANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 186
NS Q V + L ++++GTGGI+PC FG DQFD + +SFFNW+Y + V
Sbjct: 135 --NSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINV 192
Query: 187 VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVL 246
LI TVLV+IQ +V W GFG+PTV M+ A+ F G + Y L P GS + I QV+
Sbjct: 193 GALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVI 252
Query: 247 VAAYKKRRLTLPQGQMDHHGIFY--DPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKP 304
VAA++K + +P+ D +F D + KL T +F +KAA+ ++ +K
Sbjct: 253 VAAFRKISVKVPE---DKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK- 308
Query: 305 DGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPK 364
DG VN WRLCS+ QVEE+K +I ++P+WA GI+ T SQ T V Q M++H+G
Sbjct: 309 DG-EVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKN 367
Query: 365 FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIV 424
F+IP ++ + +++ W P YD ++P RK T++E G T LQR+GIG++ SI +MI
Sbjct: 368 FEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMIT 427
Query: 425 AGLVERGR-----RASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHM 479
AG++E R +A+ +S+FW PQ +L+G E F IGQ+EFF Q PD M
Sbjct: 428 AGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAM 487
Query: 480 KSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGG 539
+S+ ++L + +YLS++L+T+V +T ++G P W+ ++++ G LDYF++L+A L
Sbjct: 488 RSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSF 547
Query: 540 LNIVYFLYCARRYRYKSGI 558
LN + +L+ ++RY+YK +
Sbjct: 548 LNFLVYLWISKRYKYKKAV 566
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | ||||||
| 255558256 | 621 | nitrate transporter, putative [Ricinus c | 0.972 | 0.900 | 0.708 | 0.0 | |
| 225424885 | 619 | PREDICTED: nitrate transporter 1.7 [Viti | 0.980 | 0.911 | 0.656 | 0.0 | |
| 357486541 | 608 | Peptide transporter PTR1 [Medicago trunc | 0.980 | 0.927 | 0.670 | 0.0 | |
| 356498154 | 620 | PREDICTED: nitrate transporter 1.7-like | 0.975 | 0.904 | 0.669 | 0.0 | |
| 356567570 | 622 | PREDICTED: nitrate transporter 1.7-like | 0.970 | 0.897 | 0.675 | 0.0 | |
| 356501934 | 629 | PREDICTED: nitrate transporter 1.7-like | 0.968 | 0.885 | 0.659 | 0.0 | |
| 224102695 | 552 | predicted protein [Populus trichocarpa] | 0.930 | 0.969 | 0.706 | 0.0 | |
| 297790444 | 619 | proton-dependent oligopeptide transport | 0.966 | 0.898 | 0.625 | 0.0 | |
| 18409391 | 620 | nitrate transporter 1.7 [Arabidopsis tha | 0.982 | 0.911 | 0.617 | 0.0 | |
| 12325237 | 644 | putative peptide transporter; 37139-3325 | 0.982 | 0.877 | 0.592 | 0.0 |
| >gi|255558256|ref|XP_002520155.1| nitrate transporter, putative [Ricinus communis] gi|223540647|gb|EEF42210.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/563 (70%), Positives = 469/563 (83%), Gaps = 4/563 (0%)
Query: 10 QKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFA 69
QK+PGGW+AMPYILGNETFERLAT GLLANFMVYL+KE+HM Q +AANI+NIW G+TNFA
Sbjct: 51 QKQPGGWRAMPYILGNETFERLATFGLLANFMVYLMKEFHMEQVTAANIINIWSGLTNFA 110
Query: 70 PLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPF--GQCKS 127
PLLGAFISD Y+GRF+TI FAS AA LGM+TVTLTAWLP LHP KC C+S
Sbjct: 111 PLLGAFISDAYVGRFRTIAFASCAAFLGMVTVTLTAWLPNLHPQKCHQQSQQQYADNCES 170
Query: 128 ANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVV 187
A +QL VL+MGLG LSIGTGGIRPCSIPFGVDQFD TT+EG+KGINSF+NWYYTTFT+V
Sbjct: 171 ATPLQLAVLLMGLGFLSIGTGGIRPCSIPFGVDQFDPTTEEGMKGINSFYNWYYTTFTLV 230
Query: 188 ILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLV 247
ILIT TV+VYIQDS+SWVIGF IPTVLM+ +I+LF +G K+Y+ V+PEGSIFSG+ QV V
Sbjct: 231 ILITLTVVVYIQDSISWVIGFSIPTVLMLCSILLFFIGTKIYIHVKPEGSIFSGLAQVFV 290
Query: 248 AAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGT 307
AAYKKRRL LP GIFYDP K VLSKLPLT+QFRFLNKAAMI + N++ PDG+
Sbjct: 291 AAYKKRRLKLPDHGEVVDGIFYDPTVKEAVLSKLPLTNQFRFLNKAAMI-EKNDINPDGS 349
Query: 308 PVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQI 367
N+WRLCSIQQ+EEVKCL KI PIWA+GI+S T+I QQGTFTVSQAMKM+RHLG KFQI
Sbjct: 350 CANEWRLCSIQQIEEVKCLFKIGPIWASGIVSFTAILQQGTFTVSQAMKMDRHLGHKFQI 409
Query: 368 PPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGL 427
P G++ V SMITI +WLPFYD + VPALRKITKHEGGITLLQRIGIG++FS+LSMIVAGL
Sbjct: 410 PAGSISVFSMITIAIWLPFYDRIAVPALRKITKHEGGITLLQRIGIGIVFSVLSMIVAGL 469
Query: 428 VERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL 487
VER RRA+A +P + +SV WL PQL++MG CEAFNIIG IEF+NK+FP HM+S+ANSL
Sbjct: 470 VERDRRAAAISNPGTPMSVMWLVPQLVIMGLCEAFNIIGHIEFYNKEFPGHMRSMANSLF 529
Query: 488 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLY 547
FCSF ASYLS+L+I+IVH VT HPDWLT D++AG+LD +YF++AG+G L YFLY
Sbjct: 530 FCSFAGASYLSTLVISIVHKVTRTRDHPDWLTKDLNAGKLDRYYFVLAGMGILTFFYFLY 589
Query: 548 CARRYRYKSGIQSLEDQ-NDLEL 569
CAR Y+YK+ +Q + D+EL
Sbjct: 590 CARLYQYKTPVQIDNNSYRDVEL 612
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225424885|ref|XP_002269340.1| PREDICTED: nitrate transporter 1.7 [Vitis vinifera] gi|296086440|emb|CBI32029.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/571 (65%), Positives = 474/571 (83%), Gaps = 7/571 (1%)
Query: 4 DQKQKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWG 63
D + +KPGGW +M YILGNETFERLAT GLLANFMVYLL E+H++Q A N+LNIW
Sbjct: 44 DVSDEGPRKPGGWNSMVYILGNETFERLATFGLLANFMVYLLNEFHLDQVYATNVLNIWS 103
Query: 64 GVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFG 123
G TNFAPL+GAFISD +GRF+TI FAS A++LGM+T+TLT+W+PQLHPP C +
Sbjct: 104 GTTNFAPLVGAFISDACVGRFRTIAFASFASLLGMVTLTLTSWIPQLHPPSCTEDQQQND 163
Query: 124 QCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 183
QC S Q+G+L +GLG L+IGTGGIRPCSIPFGVDQFD TT++G +GINSF+NWYYT+
Sbjct: 164 QCTGPTSAQMGILFLGLGFLTIGTGGIRPCSIPFGVDQFDPTTEQGRRGINSFYNWYYTS 223
Query: 184 FTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIG 243
FT+V++I T++VYIQDSVSWV+GFGIPT+LM+G+IILF +G ++YV V+PEGSIFSGI
Sbjct: 224 FTLVLMIALTLVVYIQDSVSWVLGFGIPTLLMVGSIILFFLGTRVYVYVKPEGSIFSGIA 283
Query: 244 QVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLFVLSKLPLTHQFRFLNKAAMIVDNNEL 302
+V VAAYKKRR+ +P + + G +YDPP K +++KLP T +FR+LNKAA+I++ E
Sbjct: 284 RVFVAAYKKRRVKIPV-EGEKEGAYYDPPLTKGSIVAKLPFTKRFRWLNKAAVILE-GEK 341
Query: 303 KPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLG 362
+G P NQWRLCSIQQVEEVKCL+KIIP+WA+GII T+ISQQGTFTVSQA+KM+RHLG
Sbjct: 342 DANGCPSNQWRLCSIQQVEEVKCLLKIIPVWASGIICFTAISQQGTFTVSQALKMDRHLG 401
Query: 363 PKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSM 422
PKFQIP G++ VISM+T+G+W+PFYD +LVPAL+KITKHEGGITLLQR+GIG++FSILSM
Sbjct: 402 PKFQIPAGSLIVISMLTVGIWVPFYDRILVPALQKITKHEGGITLLQRMGIGIVFSILSM 461
Query: 423 IVAGLVERGRRASAHL----HPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH 478
+V+GLVER RRASA L H ++ +SV WLAPQLILMGF EAFNIIGQIEF+NK+FP++
Sbjct: 462 VVSGLVERERRASAILQAGPHGIAPMSVMWLAPQLILMGFAEAFNIIGQIEFYNKEFPEN 521
Query: 479 MKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLG 538
M+SIANSL FC+ ASYLSSL++ IVH VT + G WLT +I+ G++DY+Y+L+AG+G
Sbjct: 522 MRSIANSLFFCTIAGASYLSSLVVVIVHDVTGKAGRSAWLTKNINQGKVDYYYYLLAGMG 581
Query: 539 GLNIVYFLYCARRYRYKSGIQSLEDQNDLEL 569
LN++YFL+CARRYRYKSG E++ L+L
Sbjct: 582 VLNLIYFLFCARRYRYKSGHGVTEEEPHLDL 612
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486541|ref|XP_003613558.1| Peptide transporter PTR1 [Medicago truncatula] gi|355514893|gb|AES96516.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/571 (67%), Positives = 463/571 (81%), Gaps = 7/571 (1%)
Query: 4 DQKQKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWG 63
+ ++ +KKPGGWKAMP+ILGNE+FERLA GLLANFMVYL +E+H+ Q A+NILNIWG
Sbjct: 23 NYEKHGKKKPGGWKAMPFILGNESFERLAAFGLLANFMVYLTREFHLEQVHASNILNIWG 82
Query: 64 GVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFG 123
G++NFAPLLGAFISDTY GRFKTI FAS ++LGM VTLTAWLP+L PP C +
Sbjct: 83 GISNFAPLLGAFISDTYTGRFKTIAFASFFSLLGMTAVTLTAWLPKLQPPSCTPQQQALN 142
Query: 124 QCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 183
QC +ANS Q+G L MGL LSIG+ GIRPCSIPFGVDQFD TT+EG KGINSFFNWYYT+
Sbjct: 143 QCVTANSSQVGFLFMGLIFLSIGSSGIRPCSIPFGVDQFDPTTEEGKKGINSFFNWYYTS 202
Query: 184 FTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIG 243
FTVV+L TQTV+VYIQDSVSW GF IPT+ M+ +IILF +G K+YV V+PEGSIFS I
Sbjct: 203 FTVVLLFTQTVIVYIQDSVSWKFGFAIPTLCMLFSIILFFIGTKIYVHVKPEGSIFSSIA 262
Query: 244 QVLVAAYKKRRLTLPQGQMDHHGIFYDPP-PKLFVLSKLPLTHQFRFLNKAAMIVDNNEL 302
QVLVA++KKR++ LP + GIFYDPP +LSKLP T+QFR L+KAA++++ +L
Sbjct: 263 QVLVASFKKRKVKLPN-EKHVDGIFYDPPLIGKAILSKLPPTNQFRVLDKAALVME-GDL 320
Query: 303 KPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLG 362
PDGT VNQW L SIQQVEEVKCL + +PIWAAGI+ T+++QQGTF VSQAMKM+RHLG
Sbjct: 321 NPDGTIVNQWNLVSIQQVEEVKCLARTLPIWAAGILGFTAMAQQGTFIVSQAMKMDRHLG 380
Query: 363 PKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSM 422
PKFQIP G++GVIS+I IGLW+PFYD + VP+LRKITK+EGGITLLQRIGIGM+FSI+SM
Sbjct: 381 PKFQIPAGSLGVISLIVIGLWVPFYDRICVPSLRKITKNEGGITLLQRIGIGMVFSIISM 440
Query: 423 IVAGLVERGRRASAHLHPMSQ----VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH 478
IVAGLVE+ RR A+ +P Q +SV WL PQL+LMGFCEAFNIIG IEFFN+QFPDH
Sbjct: 441 IVAGLVEKVRRDVANSNPTPQGIAPMSVMWLFPQLVLMGFCEAFNIIGLIEFFNRQFPDH 500
Query: 479 MKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLG 538
M+SIAN+L CSF A+Y+SS+L+ VH VT H HPDWLTN+I+ GRLDYFY+L+AG+G
Sbjct: 501 MRSIANALFSCSFALANYVSSILVITVHSVTKTHNHPDWLTNNINEGRLDYFYYLLAGVG 560
Query: 539 GLNIVYFLYCARRYRYKSGIQSLEDQNDLEL 569
LN+VYFLY ++RY YK + E D+EL
Sbjct: 561 VLNLVYFLYVSQRYHYKGSVDIQEKPMDVEL 591
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498154|ref|XP_003517918.1| PREDICTED: nitrate transporter 1.7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/568 (66%), Positives = 459/568 (80%), Gaps = 7/568 (1%)
Query: 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLL 72
PGGWKAMP+ILGNETFERLA GL ANFMVYL +E+H++Q A+NILNIW G+TNF PL+
Sbjct: 55 PGGWKAMPFILGNETFERLAAFGLFANFMVYLTREFHLDQVYASNILNIWSGITNFFPLI 114
Query: 73 GAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQ 132
GAFISD Y+GRF TI FAS +++LGM+ VTLTAWLP+LHPP C + QC A++
Sbjct: 115 GAFISDAYVGRFWTIAFASFSSLLGMVVVTLTAWLPELHPPPCTPQQQALNQCVKASTPH 174
Query: 133 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQ 192
LG L+ GL LLS+G+ GIRPCSIPFGVDQFD +TDEG KGINSFFNWYYTTFTVV+LITQ
Sbjct: 175 LGALLTGLCLLSVGSAGIRPCSIPFGVDQFDPSTDEGKKGINSFFNWYYTTFTVVLLITQ 234
Query: 193 TVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKK 252
TV+VYIQDSVSW IGF IPTV M +II+F VG ++YV V+PEGSIF+ I QVLVAAY+K
Sbjct: 235 TVVVYIQDSVSWKIGFAIPTVCMFCSIIMFFVGTRIYVHVKPEGSIFTSIAQVLVAAYRK 294
Query: 253 RRLTLPQGQMDHHGIFYDPP-PKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQ 311
R++ LP+ + G+FYDPP VLSKLPLT+QFR LNKAA+I++ EL PD + N+
Sbjct: 295 RKVELPR-EKHVDGVFYDPPLIGTNVLSKLPLTNQFRGLNKAAVIME-GELNPDRSRANK 352
Query: 312 WRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGT 371
W+L SIQQVEEVKCL +I PIWAAGI+ TS++QQGTFTVSQA+KM+RHLGPKFQIP G+
Sbjct: 353 WKLVSIQQVEEVKCLARIFPIWAAGILGFTSMAQQGTFTVSQALKMDRHLGPKFQIPAGS 412
Query: 372 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERG 431
+GVIS ITIG+W+PFYD ++VP LR++TKHEGGITLLQRIGIGM+FSILSM+VA LVE+
Sbjct: 413 LGVISFITIGVWVPFYDRIMVPTLRRVTKHEGGITLLQRIGIGMVFSILSMVVAALVEKV 472
Query: 432 RRASAHLHP----MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL 487
RR A+ +P ++ +SV WL PQL+LMG CEAFN+IGQIEFFN+QFPDHM+SIAN+L
Sbjct: 473 RRDLANANPSPLGIAPMSVLWLVPQLVLMGLCEAFNVIGQIEFFNRQFPDHMRSIANALF 532
Query: 488 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLY 547
CSF ASY+SS L+T VH VT H HPDWLTNDI+AGRLDYFY+L+AG G LN+VYFL
Sbjct: 533 SCSFAGASYVSSALVTTVHHVTRTHSHPDWLTNDINAGRLDYFYYLVAGTGVLNLVYFLI 592
Query: 548 CARRYRYKSGIQSLEDQNDLELVDPTKQ 575
A+RY YK ++ D+EL K
Sbjct: 593 VAQRYHYKGSGDLQDNAQDVELASKGKS 620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567570|ref|XP_003551991.1| PREDICTED: nitrate transporter 1.7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/564 (67%), Positives = 464/564 (82%), Gaps = 6/564 (1%)
Query: 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAP 70
KK GGWKA+ +ILGNETFERLA GL ANFMVYL +E+H++Q A+NI+++W G++NF P
Sbjct: 55 KKRGGWKAIIFILGNETFERLAVFGLFANFMVYLTREFHLDQVYASNIISLWFGISNFTP 114
Query: 71 LLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANS 130
LLGAFISD Y+GRF+TI FAS + G++ V+LT+WLP+LHPP C + QC A+S
Sbjct: 115 LLGAFISDAYVGRFRTIAFASFGTLSGLIVVSLTSWLPELHPPSCTPQQLASRQCVRASS 174
Query: 131 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILI 190
Q+GVL+MGL L+IG+ G+RPCSIPFGVDQFD TTDEG KGINS+FNWYYTTFT+V+L+
Sbjct: 175 SQIGVLLMGLCFLTIGSAGVRPCSIPFGVDQFDPTTDEGRKGINSYFNWYYTTFTMVLLV 234
Query: 191 TQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAY 250
TQTV+VYIQDSVSW IGFGIPTV M+ +II+F VG ++YV V+PEGSIFSGI QVLV AY
Sbjct: 235 TQTVVVYIQDSVSWRIGFGIPTVCMLCSIIMFFVGTRVYVHVKPEGSIFSGIAQVLVTAY 294
Query: 251 KKRRLTLPQGQMDHHGIFYDPP-PKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPV 309
KKR+L LP + G+FYDPP + V+SKLPLT +FR LNKAA+I++ EL PDGT V
Sbjct: 295 KKRKLNLPMSEEKPDGVFYDPPLIGITVVSKLPLTKEFRALNKAALIME-GELNPDGTRV 353
Query: 310 NQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP 369
NQWRL SIQQVEEVKCL +IIPIWAAGI+SL S++QQGTFTVSQAMKMNRHLG KFQIP
Sbjct: 354 NQWRLVSIQQVEEVKCLARIIPIWAAGILSLISMTQQGTFTVSQAMKMNRHLGAKFQIPA 413
Query: 370 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVE 429
G+V VIS+ITI LWLPFYD +LVP LRK+TKHEGGITLL RIGIGM+FSILSM+VAG VE
Sbjct: 414 GSVSVISLITIALWLPFYDRILVPKLRKMTKHEGGITLLLRIGIGMVFSILSMVVAGYVE 473
Query: 430 RGRRASAHLHP----MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS 485
+ RR SA+ +P ++ +SV WLAP LILMG CEAFNIIGQIEFFN+QFP+HM+SI NS
Sbjct: 474 KVRRDSANSNPTPLGIAPMSVLWLAPHLILMGLCEAFNIIGQIEFFNRQFPEHMRSIGNS 533
Query: 486 LLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYF 545
CSFG +SY+SS+++ IVH T H HPDWLT+DI+AGRLDYFY+LIAGL LN+V+F
Sbjct: 534 FFSCSFGVSSYVSSIIVNIVHHSTRTHSHPDWLTDDINAGRLDYFYYLIAGLTSLNLVFF 593
Query: 546 LYCARRYRYKSGIQSLEDQNDLEL 569
+Y ARRY+YK + L++ + +EL
Sbjct: 594 IYVARRYQYKGNVDLLDETHQVEL 617
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501934|ref|XP_003519778.1| PREDICTED: nitrate transporter 1.7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/564 (65%), Positives = 454/564 (80%), Gaps = 7/564 (1%)
Query: 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLL 72
P GWKAMP+ILGNETFERLA GL ANFMVYL +E+H++Q A+NILNIW G+TNF PL+
Sbjct: 53 PEGWKAMPFILGNETFERLAAFGLFANFMVYLTREFHLDQVYASNILNIWSGITNFFPLI 112
Query: 73 GAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQ 132
GAFISD Y+GRF+TI FAS +++LGM+ VTLTAWLP+LHPP C + QC A++
Sbjct: 113 GAFISDAYVGRFRTIAFASFSSLLGMVMVTLTAWLPELHPPPCTPQQQALNQCVKASTPH 172
Query: 133 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQ 192
G L+ GL LLSIG+ GIRPCSIPFGVDQFD TTDEG KGINSFFNWYYTTFTVV+LITQ
Sbjct: 173 QGALLTGLCLLSIGSAGIRPCSIPFGVDQFDPTTDEGKKGINSFFNWYYTTFTVVLLITQ 232
Query: 193 TVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKK 252
TV+VYIQDSVSW IGF IPTV M +II+F VG ++YV V+PEGSIF+ I QVLVAAY+K
Sbjct: 233 TVVVYIQDSVSWKIGFAIPTVCMFCSIIMFFVGTRIYVHVKPEGSIFTSIAQVLVAAYRK 292
Query: 253 RRLTLPQGQMDHHGIFYDPP-PKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQ 311
R++ LP + G+FYDPP V SKLPLT+QFR LNKAA+I++ E PDG+ N+
Sbjct: 293 RKVELP-SEKHVDGVFYDPPLTGTQVFSKLPLTNQFRCLNKAAVIME-GEQNPDGSRANK 350
Query: 312 WRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGT 371
W++ SIQQVE+VKCL +I PIWAAGI+ TS++QQGTFTVSQA+KM+RHLG KFQIP G+
Sbjct: 351 WKVVSIQQVEDVKCLARIFPIWAAGILGFTSMAQQGTFTVSQALKMDRHLGAKFQIPAGS 410
Query: 372 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERG 431
+GVIS IT+G+W+PFYD ++VP LR+ITKHEGGITLLQRIGIGM+FSILSM+ A LVE+
Sbjct: 411 LGVISFITVGVWVPFYDRIMVPTLRRITKHEGGITLLQRIGIGMVFSILSMVAAALVEKV 470
Query: 432 RRASAHLHP----MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL 487
RR A+ +P ++ +SV WL PQL+LMG CEAFN+IGQIEFFN+QFP+HM+SIAN+L
Sbjct: 471 RRDLANANPSPLGIAPMSVLWLVPQLVLMGLCEAFNVIGQIEFFNRQFPEHMRSIANALF 530
Query: 488 FCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLY 547
FCS+ A+Y+SS L+T VH VT H HPDWLTNDI+AGRLDYFY+L+AG+G LN+VYFL
Sbjct: 531 FCSYAGANYVSSALVTTVHHVTRTHSHPDWLTNDINAGRLDYFYYLVAGIGVLNLVYFLI 590
Query: 548 CARRYRYKSGIQSLEDQNDLELVD 571
A+RY YK + D+EL
Sbjct: 591 VAQRYHYKGSGDLQDTTQDVELAS 614
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102695|ref|XP_002312780.1| predicted protein [Populus trichocarpa] gi|222852600|gb|EEE90147.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/546 (70%), Positives = 459/546 (84%), Gaps = 11/546 (2%)
Query: 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISD 78
MP+ILGNETFERLAT GLLANFMVYL++ +H+ Q +AAN++NIW GVTNFAPL+GAFISD
Sbjct: 1 MPFILGNETFERLATFGLLANFMVYLMRVFHLEQVTAANVINIWSGVTNFAPLVGAFISD 60
Query: 79 TYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVA--KPPFGQCKSANSMQLGVL 136
Y+GRFKTI FAS AA LGM+TVT TAW+P LHP KC+ + +G C+S SMQLGVL
Sbjct: 61 AYVGRFKTIAFASCAAFLGMVTVTSTAWVPYLHPQKCEPEGKQQSYGNCESPTSMQLGVL 120
Query: 137 VMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 196
++GLG LSIGTGGIRPCSIPFGVDQFD TT+EG+KGI+S++NWYYTTFTVV+LIT T +V
Sbjct: 121 LLGLGFLSIGTGGIRPCSIPFGVDQFDPTTEEGIKGISSYYNWYYTTFTVVMLITLTAVV 180
Query: 197 YIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLT 256
Y+QDSVSWV+GFGIPTVLM+ +IILF +G ++YV V+PEGS+FSGI QV V+AYKKRRL
Sbjct: 181 YVQDSVSWVLGFGIPTVLMLCSIILFFIGTRIYVHVKPEGSVFSGIAQVFVSAYKKRRLK 240
Query: 257 LPQG----QMDHHGIFYDPPPK--LFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVN 310
LP Q+D GIFYDPP K L +LSKLPLT+Q RFLNKAAMI +LKPDG+
Sbjct: 241 LPDNCDGEQVD--GIFYDPPIKDQLTILSKLPLTNQIRFLNKAAMIEKETDLKPDGSCAK 298
Query: 311 QWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG 370
QWRLCS+QQVEEVKCLIKI PIWA+ I+SLTS+ QQGTFTVSQA+KM+RHLG KFQIP
Sbjct: 299 QWRLCSVQQVEEVKCLIKIGPIWASSIVSLTSMVQQGTFTVSQALKMDRHLGEKFQIPAS 358
Query: 371 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVER 430
++ V+S+ITIG+WLPFYD VLVPA+RK+TKHEGGIT+LQRIGIG +FS+LSM+VAGLVER
Sbjct: 359 SIIVVSLITIGIWLPFYDRVLVPAIRKVTKHEGGITILQRIGIGNVFSVLSMVVAGLVER 418
Query: 431 GRRASAHLHPMSQ-VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC 489
RRA+A HP + +SVFWLAPQL++MG CEAF GQIEF+NKQFPDHM+S+ NSL FC
Sbjct: 419 ERRAAAISHPEAAPMSVFWLAPQLVVMGLCEAFVGTGQIEFYNKQFPDHMRSLGNSLFFC 478
Query: 490 SFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 549
SF ASYLS++L +IVH VT HPDWLTND++AG LDYFYFL+AG+G +N YFL CA
Sbjct: 479 SFAGASYLSTMLGSIVHKVTGTRHHPDWLTNDLNAGNLDYFYFLLAGMGVVNWFYFLLCA 538
Query: 550 RRYRYK 555
RYRYK
Sbjct: 539 HRYRYK 544
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790444|ref|XP_002863113.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297308935|gb|EFH39372.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/564 (62%), Positives = 446/564 (79%), Gaps = 8/564 (1%)
Query: 7 QKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVT 66
+K +KKPGGW+A+ +ILGNET ERL +IGLLANFMVYL K +H+ Q AAN++NIW G T
Sbjct: 45 EKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFT 104
Query: 67 NFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCK 126
N PL+GA+ISDTY+GRFKTI FAS A +LG++T+TLTA LPQLHP C+ P C
Sbjct: 105 NLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASLPQLHPASCNSQDPL--SCG 162
Query: 127 SANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 186
N +Q GVL++GL LS+G+GGIRPCSIPFGVDQFD T++G KG+ SFFNWYY TFTV
Sbjct: 163 GPNKLQFGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEDGAKGVASFFNWYYLTFTV 222
Query: 187 VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVL 246
V++ITQTV+VYIQD VSW+IGF IPT LM A+++F G K YV V+PEGSIFSGI QV+
Sbjct: 223 VLIITQTVIVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVI 282
Query: 247 VAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDG 306
VAA KKR+L +P + D +YDP K VLSKL ++QFRFL+KAA+I++ +L P+G
Sbjct: 283 VAARKKRKLKVP-AEDDGTVNYYDPAIKSSVLSKLHRSNQFRFLDKAAVIIEG-DLTPEG 340
Query: 307 TPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQ 366
P ++WRLCS+Q+VEEVKCLI+I+P+W+AGIISL +++ QGTFTVSQA+KM RHLGP F+
Sbjct: 341 APADKWRLCSVQEVEEVKCLIRIVPVWSAGIISLAAMTTQGTFTVSQALKMERHLGPHFE 400
Query: 367 IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAG 426
IP G++ VIS++TIG++LPFYD V VP +R+IT H+ GITLLQRIG G+IF+I SMIVAG
Sbjct: 401 IPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIIFAIFSMIVAG 460
Query: 427 LVERGRR----ASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSI 482
+VER RR + M+ +SVFWL+PQLILMG CEAFNIIGQIEFFN QFP+HM+SI
Sbjct: 461 IVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSI 520
Query: 483 ANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNI 542
ANSL SF +SYLSSLL+T+VH + H PDWL +++AG+LDYFY+LIA +G +N+
Sbjct: 521 ANSLFSLSFAGSSYLSSLLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAIMGVVNL 580
Query: 543 VYFLYCARRYRYKSGIQSLEDQND 566
VYF YCAR YRYK G+Q + + D
Sbjct: 581 VYFWYCARGYRYKVGLQIEDFEED 604
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18409391|ref|NP_564979.1| nitrate transporter 1.7 [Arabidopsis thaliana] gi|75158815|sp|Q8RX77.1|PTR21_ARATH RecName: Full=Nitrate transporter 1.7 gi|19699104|gb|AAL90918.1| At1g69870/T17F3_10 [Arabidopsis thaliana] gi|21928025|gb|AAM78041.1| At1g69870/T17F3_10 [Arabidopsis thaliana] gi|332196872|gb|AEE34993.1| nitrate transporter 1.7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/575 (61%), Positives = 451/575 (78%), Gaps = 10/575 (1%)
Query: 7 QKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVT 66
+K +KKPGGW+A+ +ILGNET ERL +IGLLANFMVYL K +H+ Q AAN++NIW G T
Sbjct: 46 EKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFT 105
Query: 67 NFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCK 126
N PL+GA+ISDTY+GRFKTI FAS A +LG++T+TLTA PQLHP C+ P C
Sbjct: 106 NLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPL--SCG 163
Query: 127 SANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 186
N +Q+GVL++GL LS+G+GGIRPCSIPFGVDQFD T+EGVKG+ SFFNWYY TFTV
Sbjct: 164 GPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTV 223
Query: 187 VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVL 246
V++ITQTV+VYIQD VSW+IGF IPT LM A+++F G K YV V+PEGSIFSGI QV+
Sbjct: 224 VLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVI 283
Query: 247 VAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDG 306
VAA KKR+L LP + D +YDP K VLSKL ++QFR L+KAA++++ +L P+G
Sbjct: 284 VAARKKRKLKLP-AEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVIE-GDLTPEG 341
Query: 307 TPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQ 366
P ++WRLCS+Q+VEEVKCLI+I+PIW+AGIISL +++ QGTFTVSQA+KM+R+LGPKF+
Sbjct: 342 PPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFE 401
Query: 367 IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAG 426
IP G++ VIS++TIG++LPFYD V VP +R+IT H+ GITLLQRIG G++F+I SMIVAG
Sbjct: 402 IPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAG 461
Query: 427 LVERGRR----ASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSI 482
+VER RR + M+ +SVFWL+PQLILMG CEAFNIIGQIEFFN QFP+HM+SI
Sbjct: 462 IVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSI 521
Query: 483 ANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNI 542
ANSL SF +SYLSS L+T+VH + H PDWL +++AG+LDYFY+LIA LG +N+
Sbjct: 522 ANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVNL 581
Query: 543 VYFLYCARRYRYKSG--IQSLEDQNDLELVDPTKQ 575
VYF YCAR YRYK G I+ E+ + V+ T +
Sbjct: 582 VYFWYCARGYRYKVGLPIEDFEEDKSSDDVEMTSK 616
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12325237|gb|AAG52567.1|AC010675_15 putative peptide transporter; 37139-33250 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/599 (59%), Positives = 451/599 (75%), Gaps = 34/599 (5%)
Query: 7 QKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVT 66
+K +KKPGGW+A+ +ILGNET ERL +IGLLANFMVYL K +H+ Q AAN++NIW G T
Sbjct: 46 EKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFT 105
Query: 67 NFAPLLGAFISDTYIGRFKTITFASIAAIL------------------------GMLTVT 102
N PL+GA+ISDTY+GRFKTI FAS A +L G++T+T
Sbjct: 106 NLTPLVGAYISDTYVGRFKTIAFASFATLLLLNYFCIVRKRMNLLRDHAIEDDKGLITIT 165
Query: 103 LTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 162
LTA PQLHP C+ P C N +Q+GVL++GL LS+G+GGIRPCSIPFGVDQF
Sbjct: 166 LTASFPQLHPASCNSQDPL--SCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQF 223
Query: 163 DATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 222
D T+EGVKG+ SFFNWYY TFTVV++ITQTV+VYIQD VSW+IGF IPT LM A+++F
Sbjct: 224 DQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMF 283
Query: 223 LVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLP 282
G K YV V+PEGSIFSGI QV+VAA KKR+L LP + D +YDP K VLSKL
Sbjct: 284 FAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLP-AEDDGTVTYYDPAIKSSVLSKLH 342
Query: 283 LTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTS 342
++QFR L+KAA++++ +L P+G P ++WRLCS+Q+VEEVKCLI+I+PIW+AGIISL +
Sbjct: 343 RSNQFRCLDKAAVVIE-GDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAA 401
Query: 343 ISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHE 402
++ QGTFTVSQA+KM+R+LGPKF+IP G++ VIS++TIG++LPFYD V VP +R+IT H+
Sbjct: 402 MTTQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHK 461
Query: 403 GGITLLQRIGIGMIFSILSMIVAGLVERGRR----ASAHLHPMSQVSVFWLAPQLILMGF 458
GITLLQRIG G++F+I SMIVAG+VER RR + M+ +SVFWL+PQLILMG
Sbjct: 462 SGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAGDPTGMTPMSVFWLSPQLILMGL 521
Query: 459 CEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWL 518
CEAFNIIGQIEFFN QFP+HM+SIANSL SF +SYLSS L+T+VH + H PDWL
Sbjct: 522 CEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWL 581
Query: 519 TNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSG--IQSLEDQNDLELVDPTKQ 575
+++AG+LDYFY+LIA LG +N+VYF YCAR YRYK G I+ E+ + V+ T +
Sbjct: 582 NKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVEMTSK 640
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 575 | ||||||
| TAIR|locus:2196800 | 620 | NRT1.7 "nitrate transporter 1. | 0.972 | 0.901 | 0.567 | 1.9e-170 | |
| TAIR|locus:2205719 | 576 | NRT1.6 "nitrate transporter 1. | 0.944 | 0.942 | 0.549 | 1.3e-157 | |
| TAIR|locus:2196734 | 555 | AT1G69860 [Arabidopsis thalian | 0.923 | 0.956 | 0.488 | 8e-140 | |
| TAIR|locus:2035005 | 587 | NRT1.9 "nitrate transporter 1. | 0.946 | 0.926 | 0.423 | 3.3e-118 | |
| TAIR|locus:2172249 | 616 | GTR2 "AT5G62680" [Arabidopsis | 0.932 | 0.870 | 0.427 | 2.2e-114 | |
| TAIR|locus:2147499 | 559 | AT5G28470 [Arabidopsis thalian | 0.916 | 0.942 | 0.372 | 4.5e-98 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.930 | 0.897 | 0.392 | 2.5e-97 | |
| TAIR|locus:2037452 | 607 | AT1G52190 [Arabidopsis thalian | 0.921 | 0.873 | 0.363 | 3.7e-96 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.925 | 0.933 | 0.366 | 1.9e-92 | |
| TAIR|locus:2093442 | 591 | AT3G16180 [Arabidopsis thalian | 0.921 | 0.896 | 0.367 | 8.1e-92 |
| TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1657 (588.4 bits), Expect = 1.9e-170, P = 1.9e-170
Identities = 323/569 (56%), Positives = 408/569 (71%)
Query: 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLL 72
PGGW+A+ +ILGNET ERL +IGLLANFMVYL K +H+ Q AAN++NIW G TN PL+
Sbjct: 52 PGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFTNLTPLV 111
Query: 73 GAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQ 132
GA+ISDTY+GRFKTI FAS A +LG++T+TLTA PQLHP C+ ++ P C N +Q
Sbjct: 112 GAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCN-SQDPLS-CGGPNKLQ 169
Query: 133 XXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXX 192
RPCSIPFGVDQFD T+EGVKG+ SFFNWYY
Sbjct: 170 IGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQ 229
Query: 193 XXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKK 252
YIQD VSW+IGF IPT LM A+++F G K YV V+PEGSIFSGI QV+VAA KK
Sbjct: 230 TVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKK 289
Query: 253 RRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQW 312
R+L LP + D +YDP K VLSKL ++QFR L+KAA++++ +L P+G P ++W
Sbjct: 290 RKLKLP-AEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVIEG-DLTPEGPPADKW 347
Query: 313 RLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTV 372
RLCS+Q+VEEVKCL SL +++ QGTFTVSQA+KM+R+LGPKF+IP G++
Sbjct: 348 RLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSL 407
Query: 373 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGR 432
VIS++TIG++LPFYD V VP +R+IT H+ GITLLQRIG G++F+I SMIVAG+VER R
Sbjct: 408 SVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMR 467
Query: 433 RA-SAHL-HP--MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF 488
R S + P M+ +SVFWL+PQLILMG CEAFNIIGQIEFFN QFP+HM+SIANSL
Sbjct: 468 RIRSINAGDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFS 527
Query: 489 CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYC 548
SF +SYLSS L+T+VH + H PDWL +++AG+LDYFY+LIA LG +N+VYF YC
Sbjct: 528 LSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVLGVVNLVYFWYC 587
Query: 549 ARRYRYKSG--IQSLEDQNDLELVDPTKQ 575
AR YRYK G I+ E+ + V+ T +
Sbjct: 588 ARGYRYKVGLPIEDFEEDKSSDDVEMTSK 616
|
|
| TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
Identities = 304/553 (54%), Positives = 384/553 (69%)
Query: 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLG 73
GGW+A+ +ILGNET E+L +IG+ ANFM+YL +HM A N+ +W G+TNFAPLLG
Sbjct: 16 GGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWMGLTNFAPLLG 75
Query: 74 AFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQX 133
A ISD YIGRFKTI +AS+ +ILG++TVTLTA LPQLHPP C+ P +C N +Q
Sbjct: 76 ALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPD--ECDDPNKLQL 133
Query: 134 XXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXX 193
RPCSIPFGVDQFD T++G+KG+ SFFNWYY
Sbjct: 134 GILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKGVASFFNWYYLTLTMVLIFSHT 193
Query: 194 XXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKR 253
Y+Q +VSWVIGF IPT LM A++LF VG + YV V+PEGS+FSGI +V+VAA KKR
Sbjct: 194 VVVYLQ-TVSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIARVIVAARKKR 252
Query: 254 RLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWR 313
L + D +Y+PP K VLSKLPLT QF+FL+KAA+I+D +L +G P N+WR
Sbjct: 253 DLKISLVD-DGTEEYYEPPVKPGVLSKLPLTDQFKFLDKAAVILDG-DLTSEGVPANKWR 310
Query: 314 LCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVG 373
LCSIQ+VEEVKCL S+ +++ Q TF V QA KM+RH+GP F+IP ++
Sbjct: 311 LCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHMGPHFEIPAASIT 370
Query: 374 VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRR 433
VIS ITIG+W+P Y+ +LVP L ++ K +TLLQR+GIG++F+ILSM AG VE RR
Sbjct: 371 VISYITIGIWVPIYEHLLVPFLWRMRKFR--VTLLQRMGIGIVFAILSMFTAGFVEGVRR 428
Query: 434 ASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGF 493
A M+Q+SVFWLA LILMG CE+FN IG IEFFN QFP+HM+SIANSL SF
Sbjct: 429 TRAT--EMTQMSVFWLALPLILMGLCESFNFIGLIEFFNSQFPEHMRSIANSLFPLSFAA 486
Query: 494 ASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYR 553
A+YLSSLL+T VH V+ HPDWL D+D G+LDYFY+LIA LG +N+VYF YCA RY+
Sbjct: 487 ANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYYLIAVLGVVNLVYFWYCAHRYQ 546
Query: 554 YKSGIQSLEDQND 566
YK+G Q +ED N+
Sbjct: 547 YKAGSQ-IEDFNE 558
|
|
| TAIR|locus:2196734 AT1G69860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
Identities = 266/545 (48%), Positives = 362/545 (66%)
Query: 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLL 72
P GWKAMPYI+GNET ERLAT GL+ANFMVY+++EYHM+Q A ++N W +TNFAP++
Sbjct: 19 PLGWKAMPYIIGNETLERLATFGLMANFMVYMVREYHMDQVQAVTLINTWSALTNFAPII 78
Query: 73 GAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQ 132
GAFISD+Y G+F TI F SIA +LGML +T T+ +P L PP C A GQC + Q
Sbjct: 79 GAFISDSYTGKFNTIVFGSIAELLGMLVLTFTSLVPNLRPPPC-TADQITGQCIPYSYSQ 137
Query: 133 XXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXX 192
R CS+PF +DQFD +T+EG +G SFF+WYY
Sbjct: 138 LYVLLSGLFLLSVGTGGIRSCSVPFSLDQFDDSTEEGREGSRSFFSWYYTTHTIVQLVSM 197
Query: 193 XXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKK 252
Y+Q+++SW IGF IPTVL A++L VG + YV V+PEGS+FSG+ +VLVAAYKK
Sbjct: 198 TLVLYVQNNISWGIGFAIPTVLNFFALLLLFVGTRYYVFVKPEGSVFSGVFKVLVAAYKK 257
Query: 253 RRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQW 312
R+ G +D+H + + +KL LT QFRFLNKA ++++N+E G +W
Sbjct: 258 RKARFTSG-IDYHQPLLETDLQS---NKLVLTDQFRFLNKAVIVMNNDEA---GN--EEW 308
Query: 313 RLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHL-GPKFQIPPGT 371
R C+++Q+E++K + +++QQ TFTVSQA+KM+ G + IPP +
Sbjct: 309 RTCTVRQIEDIKSIISIIPIFASSIIGFLAMNQQQTFTVSQALKMDLQFPGTSYLIPPAS 368
Query: 372 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERG 431
+ VIS++ IG+WLPFY+TVLV + ITK GGI+LLQ++GIG IFSI +M+++G+VER
Sbjct: 369 ITVISLLNIGIWLPFYETVLVRHIENITKQNGGISLLQKVGIGNIFSISTMLISGIVERK 428
Query: 432 RRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSF 491
RR L+ + ++SVFWL PQ +LMGF + F I+G EFFNKQ P +M+SI NSLL+
Sbjct: 429 RR-DLSLNGV-KMSVFWLTPQQVLMGFYQVFTIVGLTEFFNKQVPINMRSIGNSLLYLGL 486
Query: 492 GFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 551
ASYLSS +++IVH VTAR G WLT+DID +LD FY+ IA L LN ++F +CARR
Sbjct: 487 SLASYLSSAMVSIVHSVTARGGQ-SWLTDDIDKSKLDCFYYFIAALSTLNFIFFFWCARR 545
Query: 552 YRYKS 556
YRY++
Sbjct: 546 YRYRN 550
|
|
| TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 238/562 (42%), Positives = 333/562 (59%)
Query: 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGA 74
GWK MP+I+GNETFE+L +G +N ++YL ++M +AA ++NI+GG +NF ++ A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 75 FISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXX 134
F+ D+Y GR+KT++FA IA LG + + LTA + LHP +C AK C + Q
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQC--AKEIGSVCNGPSIGQIM 139
Query: 135 XXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXX 194
RPC++PFG DQFD T EG +GI SFFNWY+
Sbjct: 140 FLAGAMVLLVIGAGGIRPCNLPFGADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTL 199
Query: 195 XXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRR 254
Y+Q +VSW IG IP +LM+ I+F G KLYV V+ GS I +V+V A KKRR
Sbjct: 200 IVYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRR 259
Query: 255 LTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRL 314
L P G + Y+ F SKL T QFRFL+K+A+ +++L DG+PV+ W+L
Sbjct: 260 LK-PVGPNE----LYNYIASDFKNSKLGHTEQFRFLDKSAIQTQDDKLNKDGSPVDAWKL 314
Query: 315 CSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGP-KFQIPPGTVG 373
CS+QQVEEVKC+ + QQ T+T+ Q+++ +R LGP FQIP G+
Sbjct: 315 CSMQQVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYT 374
Query: 374 VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRR 433
V M+ + +++P YD VLVP LRK T +GGIT LQR+G G+ I SM+V+ +VE+ RR
Sbjct: 375 VFLMLGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRR 434
Query: 434 ASAHLHP----------MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA 483
A P +S +S WL PQL+LMG +A +GQ+EF+ KQFP++M+S A
Sbjct: 435 KVALTKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFA 494
Query: 484 NSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIV 543
SL +C G ASYLS+ L++ VH T WL D++ GRL+YFYFL+AG+ LN+
Sbjct: 495 GSLYYCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLNLA 554
Query: 544 YFLYCARRYRYKSGIQSLEDQN 565
YFL + YRYK + +D +
Sbjct: 555 YFLLVSHWYRYKDVVAKDKDMD 576
|
|
| TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 236/552 (42%), Positives = 319/552 (57%)
Query: 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGA 74
GWK MP+I+GNETFE+L IG L+N +VYL +++ +AA I+N + G NF + A
Sbjct: 46 GWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGTINFGTFVAA 105
Query: 75 FISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQXX 134
F+ DTY GR+KT++ A IA LG + LTA +PQLHP C A C + Q
Sbjct: 106 FLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSI--CNGPSGGQIA 163
Query: 135 XXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXXX 194
RPC++ FG DQF+ ++ G +GI+SFFNWY+
Sbjct: 164 FLLMGLGFLVVGAGGIRPCNLAFGADQFNPKSESGKRGIDSFFNWYFFTFTFAQILSLTL 223
Query: 195 XXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRR 254
Y+Q +VSW IG IP VLM A ++F G KLYV ++ GS +GI QV+ A KKR
Sbjct: 224 VVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVIAVAIKKRG 283
Query: 255 LTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRL 314
L P Q ++ PPK + SKL T QFRFL+KAA++ ++L+PDG P + W+L
Sbjct: 284 LK-PAKQ-PWLNLYNYYPPK-YANSKLKYTDQFRFLDKAAILTPEDKLQPDGKPADPWKL 340
Query: 315 CSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPK-FQIPPGTVG 373
C++QQVEEVKC+ +I+QQ T+ V QA++ +R LG F IP T
Sbjct: 341 CTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIPAATYV 400
Query: 374 VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRR 433
V M + +++ YD VLVP +R+IT + GITLLQRIG G+ F+ S++VAG VE RR
Sbjct: 401 VFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAGFVEERRR 460
Query: 434 ASAHLHP----------MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA 483
A P +S +S WL PQL L G EAF IGQ+EF+ KQFP++M+S A
Sbjct: 461 TFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFYYKQFPENMRSFA 520
Query: 484 NSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIV 543
S+ + G +SYL S LI VH T +WL D++ GRLD FYF+IAG+ +N
Sbjct: 521 GSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLFYFMIAGILAVNFA 580
Query: 544 YFLYCARRYRYK 555
YFL +R YRYK
Sbjct: 581 YFLVMSRWYRYK 592
|
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| TAIR|locus:2147499 AT5G28470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
Identities = 203/545 (37%), Positives = 309/545 (56%)
Query: 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLG 73
GGW+A+ YI+ NE+FE+LA++ L+ N VYL+ +Y++ N++NIW G N L G
Sbjct: 19 GGWRAIKYIIANESFEKLASMSLIGNLSVYLMTKYNLGGVFLVNVINIWFGSCNILTLAG 78
Query: 74 AFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSM-Q 132
AF+SD Y+GRF T+ SIA+ +GM LTA LP L P C P C + + Q
Sbjct: 79 AFVSDAYLGRFWTLLLGSIASFIGMGIFALTAALPSLRPDAC--IDP--SNCSNQPAKWQ 134
Query: 133 XXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXX 192
RPC+I FG DQFD +T +G + +FFNW+Y
Sbjct: 135 LGVLFSGLGLLAIGAGGVRPCNIAFGADQFDTSTKKGKAHLETFFNWWYFSFTVALVIAL 194
Query: 193 XXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKK 252
YIQ ++SWVIGF IPT + +I F++G+ Y+ + EGS+F+ I +V+ AA KK
Sbjct: 195 TGVVYIQTNISWVIGFVIPTACLALSITTFVIGQHTYICAKAEGSVFADIVKVVTAACKK 254
Query: 253 RRLTLPQGQMDHH-GIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQ 311
R++ P + + G D P V K H+ RF +KA+++ + NEL DG +
Sbjct: 255 RKVK-PGSDITFYIGPSNDGSPTTLVRDK----HRLRFFDKASIVTNPNELNEDGNAKYK 309
Query: 312 WRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGP-KFQIPPG 370
WRLCS+QQV+ +KC+ QQ + + QAM+M++ GP FQ+P G
Sbjct: 310 WRLCSVQQVKNLKCVTAILPVWVTGIACFILTDQQNIYGILQAMQMDKTFGPHNFQVPAG 369
Query: 371 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVER 430
+ ++SMIT+ +W+ Y+ V++P +++IT + +TL RI I + I+ MIVAG E+
Sbjct: 370 WMNLVSMITLAIWISLYECVIIPIVKQITGRKKRLTLKHRIEI--VMGIICMIVAGFQEK 427
Query: 431 GRRASAHLHP--MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF 488
RRASA + +S VS+ L PQ L G EAF+ + +EF + P+HM+++A ++ F
Sbjct: 428 KRRASALKNGSFVSPVSIVMLLPQFALAGLTEAFSAVALMEFLTVRMPEHMRAVAGAIFF 487
Query: 489 CSFGFASYLSSLLITIVHGVTARHGHPDWLTN-DIDAGRLDYFYFLIAGLGGLNIVYFLY 547
S ASY+ +LLI ++ VT + G WL + D++ RL+ ++F+IAG+ N++YF
Sbjct: 488 LSSSIASYICTLLINVIDAVTRKEGK-SWLGDKDLNKNRLENYFFIIAGIQVANLLYFRL 546
Query: 548 CARRY 552
A RY
Sbjct: 547 FASRY 551
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| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 216/551 (39%), Positives = 310/551 (56%)
Query: 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLG 73
GG MP+I NE E+LA +G AN + YL + H+ T AAN L + G ++ PLLG
Sbjct: 25 GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLLG 84
Query: 74 AFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQX 133
AFI+D++ GRF TITFASI +GM +T++A +P L PP C + C A++ Q
Sbjct: 85 AFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV----CVVADTAQL 140
Query: 134 XXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTDEGVKGINSFFNWYYXXXXXXXXXXXX 193
RPC + FG DQFD + ++FNWYY
Sbjct: 141 SILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVT 200
Query: 194 XXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKR 253
+IQD+V W +G GIPTV M ++I F+ G +LY + P GS F+ + QV VAA++KR
Sbjct: 201 VLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKR 260
Query: 254 RLTLPQG-QMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQW 312
+L + + + D P L KL T FL+KAA++ + + LKP P N W
Sbjct: 261 KLRMVSDPSLLYFNDEIDAPISLG--GKLTHTKHMSFLDKAAIVTEEDNLKPGQIP-NHW 317
Query: 313 RLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTV 372
RL ++ +VEE+K + +T+ +QQGTF++ QA MNRHL FQIP G++
Sbjct: 318 RLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSM 377
Query: 373 GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGR 432
V + + + + FYD V V RK T E GIT L R+GIG + SI++ +VAG VE R
Sbjct: 378 SVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKR 437
Query: 433 RASA--H-L----HPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS 485
++ A H L H + +S WL PQ L G EAF IG +EFF Q P+ M+S A +
Sbjct: 438 KSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTATA 497
Query: 486 LLFCSFGFASYLSSLLITIVHGVTARHGHPDWLT-NDIDAGRLDYFYFLIAGLGGLNIVY 544
L + + +Y+S+LL+T+VH +A+ +WL N+++ GRL+YFY+LI L +N+VY
Sbjct: 498 LFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLVY 557
Query: 545 FLYCARRYRYK 555
+L+CA+ Y YK
Sbjct: 558 YLWCAKIYTYK 568
|
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| TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 201/553 (36%), Positives = 308/553 (55%)
Query: 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLG 73
GG MP+I+ NE FE++A+ GLL N ++YL+++Y N+L +W +NF PLLG
Sbjct: 23 GGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLG 82
Query: 74 AFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQX 133
AF+SD+Y+GRF TI+ AS+++ LGM+ + LTA LPQ+ P CD C S+ + Q
Sbjct: 83 AFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAG-SHCGSSTASQL 141
Query: 134 XXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTD-EGVKGINSFFNWYYXXXXXXXXXXX 192
RPCS+ FG DQ D + + + + SFF WYY
Sbjct: 142 ALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAF 201
Query: 193 XXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKK 252
YIQ+ + W IGFG+P VLM+ A +LF++ LYV S+F+G+ Q +VAAYKK
Sbjct: 202 TGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKK 261
Query: 253 RRLTLPQGQMDHHGIF--YDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNE-LKPDGTPV 309
R+L+LP DHH F Y + K P + + RFLNKA +I + E + DG +
Sbjct: 262 RKLSLP----DHHDSFDCYYHMKDSEI--KAP-SQKLRFLNKACLISNREEEIGSDGFAL 314
Query: 310 NQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHL---GPKFQ 366
N WRLC+ +VEE+K L + SQ +F + QA M+R L G FQ
Sbjct: 315 NPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTSQS-SFQLLQATSMDRRLSRHGSSFQ 373
Query: 367 IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAG 426
+P G+ G+ ++I + LW+ YD ++P KI +++ R+G+G+ S L+M ++
Sbjct: 374 VPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISA 433
Query: 427 LVERGRRASA-------HLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHM 479
+VE RR A + + + +S WL PQ +L G EA IGQ EFF +FP M
Sbjct: 434 MVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSM 493
Query: 480 KSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGG 539
SIA SL AS L+S+++ V+ +T+R+G W++++I+ G +Y+Y+++A +
Sbjct: 494 SSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSF 553
Query: 540 LNIVYFLYCARRY 552
+N++Y++ C+ Y
Sbjct: 554 INVIYYVICSWSY 566
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| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
Identities = 203/554 (36%), Positives = 300/554 (54%)
Query: 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLG 73
G WKA +ILGNE ERLA G+ N + YL + +AAN + W G PL+G
Sbjct: 26 GNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIG 85
Query: 74 AFISDTYIGRFKTI-TFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQ 132
AFI+D Y+GR+ TI TF I + GM +TL+A +P L P C+ C NS Q
Sbjct: 86 AFIADAYLGRYWTIATFVFIY-VSGMTLLTLSASVPGLKPGNCNA-----DTCHP-NSSQ 138
Query: 133 XXXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTD-EGVKGINSFFNWYYXXXXXXXXXX 191
+PC FG DQFD + E +K +SFFNW+Y
Sbjct: 139 TAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKK-SSFFNWFYFSINVGALIA 197
Query: 192 XXXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYK 251
+IQ +V W GFG+PTV M+ A+ F G + Y L P GS + I QV+VAA++
Sbjct: 198 ATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFR 257
Query: 252 KRRLTLPQGQMDHHGIFY--DPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPV 309
K + +P+ D +F D + KL T +F +KAA+ ++ +K DG V
Sbjct: 258 KISVKVPE---DKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK-DGE-V 312
Query: 310 NQWRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPKFQIPP 369
N WRLCS+ QVEE+K + T SQ T V Q M++H+G F+IP
Sbjct: 313 NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPS 372
Query: 370 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVE 429
++ + +++ W P YD ++P RK T++E G T LQR+GIG++ SI +MI AG++E
Sbjct: 373 ASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLE 432
Query: 430 RGRRASAHLH---PMSQV--SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN 484
R H Q+ S+FW PQ +L+G E F IGQ+EFF Q PD M+S+ +
Sbjct: 433 VVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCS 492
Query: 485 SLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVY 544
+L + +YLS++L+T+V +T ++G P W+ ++++ G LDYF++L+A L LN +
Sbjct: 493 ALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLV 552
Query: 545 FLYCARRYRYKSGI 558
+L+ ++RY+YK +
Sbjct: 553 YLWISKRYKYKKAV 566
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| TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 202/550 (36%), Positives = 297/550 (54%)
Query: 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLG 73
GG MP+I+ NE FE++A+ GLL N ++YL+ +Y + +L +W TNF PL+G
Sbjct: 25 GGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFMPLVG 84
Query: 74 AFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQX 133
AF+SD+Y+GRF TI AS++++LGM+ + LTA LPQ+ P C VA C SA S Q
Sbjct: 85 AFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPC-VATAGTN-CSSATSSQL 142
Query: 134 XXXXXXXXXXXXXXXXXRPCSIPFGVDQFDATTD-EGVKGINSFFNWYYXXXXXXXXXXX 192
RPCS+ FG DQ D + + + + SFF WYY
Sbjct: 143 ALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVAVLIAF 202
Query: 193 XXXXYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKK 252
YIQD + W IGFGIP +LM+ A LF+ LYV + S+F+G+ QV+ AAY K
Sbjct: 203 TVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQVVAAAYVK 262
Query: 253 RRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNE-LKPDGTPVNQ 311
R LTLP D +Y K P + + RFLNKA I + +E L DG +NQ
Sbjct: 263 RNLTLPDHH-DSRDCYYRLKDSEL---KAP-SDKLRFLNKACAISNRDEDLGSDGLALNQ 317
Query: 312 WRLCSIQQVEEVKCLXXXXXXXXXXXXSLTSISQQGTFTVSQAMKMNRHLGPK--FQIPP 369
WRLC+ QVE++K L ++SQ +F + QA M+R L FQIP
Sbjct: 318 WRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQN-SFQLLQAKSMDRRLSSNSTFQIPA 376
Query: 370 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVE 429
G+ G+ ++I + W+ YD ++P KI + + R+G+G+ S L+M V+ VE
Sbjct: 377 GSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISFLAMAVSATVE 436
Query: 430 RGRRASAHLHPMSQ-------VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSI 482
RR +A ++ +S WL PQ +L G EA IGQ EFF +FP M SI
Sbjct: 437 HYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFYTEFPKSMSSI 496
Query: 483 ANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNI 542
A SL A+ L+S+++ V +++ G+ W+ ++I+ G DY+Y+++A L +N+
Sbjct: 497 AASLFGLGMAVANILASVILNAVKN-SSKQGNVSWIEDNINKGHYDYYYWVLAILSFVNV 555
Query: 543 VYFLYCARRY 552
+Y++ C+ Y
Sbjct: 556 IYYVVCSWSY 565
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8RX77 | PTR21_ARATH | No assigned EC number | 0.6173 | 0.9826 | 0.9112 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00028975001 | SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (619 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 575 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 2e-56 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 5e-26 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 5e-17 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 1e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-04 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 0.003 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 2e-56
Identities = 113/414 (27%), Positives = 183/414 (44%), Gaps = 54/414 (13%)
Query: 84 FKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLL 143
FKTI SI +G + +TL A S + +Q+ + +GL L+
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGA------------------IPPSLSPVQVALFYIGLYLI 42
Query: 144 SIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS 203
++GTGGI+P FG DQFD T D + FF+W+Y + LI + Y+Q +V
Sbjct: 43 ALGTGGIKPNVSAFGADQFDETQD---PRRDGFFSWFYFSINAGSLIATIITPYLQQNVG 99
Query: 204 WVIGFGIPTVLMIGAIILFLVGKKLY-VLVEPEGSIF-SGIGQVLVAAYKKRRLTLPQGQ 261
+ +GFG+P V M+ A+++FL+G + Y P GS F I ++ AA K R Q
Sbjct: 100 YPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNR---KLQLP 156
Query: 262 MDHHGIFY-DPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQV 320
D H +++ +S+ + + + V
Sbjct: 157 KDSHWLYWALEKYNKRSISQTKVHTRVAVIFIPLPKFWA-------------LFDQQGSV 203
Query: 321 EEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITI 380
++ ++ ++PIWA I+ +Q T V Q M+R + P F+IPP + + + +
Sbjct: 204 WLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAV 263
Query: 381 GLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVE--RGRRASAHL 438
+ LP D ++ P LR + G+TL QR G+GM I++ +A +VE R R A+A
Sbjct: 264 LILLPILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALG 319
Query: 439 HP----MSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF 488
+ + W P+L + G A G +EF P M S+ L
Sbjct: 320 LTSPGWTVPLFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSA 369
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 5e-26
Identities = 104/421 (24%), Positives = 185/421 (43%), Gaps = 74/421 (17%)
Query: 35 GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAA 94
G+ ++YLL N+ +A NI + + + PL+GA I+D+++G+FKTI + S+
Sbjct: 5 GMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVY 64
Query: 95 ILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCS 154
++G +L A HP A S+ +GL L+++GTGGI+PC
Sbjct: 65 VVGHALASLGAVPSLGHPL------------HDALSL------VGLALIALGTGGIKPCV 106
Query: 155 IPFGVDQFDATTDEGVKGINSFFNWYY------TTFTVVILITQTVLVY-IQDSVSWVIG 207
FG DQF + + FF+++Y + F+ +I V + +
Sbjct: 107 SAFGGDQF---EERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLA 163
Query: 208 FGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGI 267
FG+P +LM A+I+F +G K+Y P G+I S + + +V A KKR T
Sbjct: 164 FGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKRFRT----------- 212
Query: 268 FYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLI 327
P H +L+ AA I+ + K L+
Sbjct: 213 -----RS----EDWPRLH---WLDWAAPKYL------------------IRMIRSTKRLL 242
Query: 328 KIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFY 387
+++ ++ + QQG+ QA +M+ +G F I P + ++ + + + +P +
Sbjct: 243 RVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-LFPIQPDQMQAVNPLLVLILVPIF 301
Query: 388 DTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVF 447
D V+ PAL K T L+++ +GM+ + L+ VA L++ + P + + F
Sbjct: 302 DYVVYPALAKCGTR---FTSLRKMAVGMLLAALAFAVAALLQNKINPTLPEEPSASII-F 357
Query: 448 W 448
Sbjct: 358 L 358
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[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 5e-17
Identities = 93/494 (18%), Positives = 169/494 (34%), Gaps = 86/494 (17%)
Query: 21 YILGNETFERLATIG---LLANFMVYLLKE-YHMNQTSAANILNIWGGVTNFAPLLGAFI 76
I E +ER + G +L ++ Y L + ++T A + + +G + P++G ++
Sbjct: 25 LIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWL 84
Query: 77 SDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVL 136
+D +G +TI +I +G L + +++ G L
Sbjct: 85 ADRVLGTRRTIVLGAILMAIGHLVLAISSVS------------------------GPGGL 120
Query: 137 VMGLGLLSIGTGGIRPCSIPFGVDQF---DATTDEGVKGINSFFNWYYTTFTVVILITQT 193
+GL L+ +GTG +P + + D D G F +Y + LI
Sbjct: 121 YIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG-------FTLFYMGINIGSLIAPI 173
Query: 194 VLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKR 253
+ + + W +GFG+ V MI +++FL+G++ GIG V
Sbjct: 174 ITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVK----------GIGGVPDPNPLSF 223
Query: 254 RLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWR 313
LP L V+ L N + ++ +
Sbjct: 224 NFLLPVLG------------GLVVMILAALLTLLLNQNTFSGVLLVISILI-AIIYFAEA 270
Query: 314 LCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGT-- 371
S + +E + L+ IP++ +I Q G+ A + F++PP
Sbjct: 271 FRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQ 330
Query: 372 ------VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVA 425
+ + S I LW P+ + +G+I + L ++
Sbjct: 331 SLNPFFIILFSPILAALWTKLGRGNKQPSTP------------IKFALGLILAGLGFLIL 378
Query: 426 GLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS 485
L P VSV+WL +L F E F + K P +KS +
Sbjct: 379 LLAGIWFGG-----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMA 433
Query: 486 LLFCSFGFASYLSS 499
+ F + L
Sbjct: 434 MWFLTVAAGQTLGG 447
|
Length = 498 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 29/211 (13%)
Query: 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFI 76
+A+ Y++ + +E + G+ A ++YL + + A + + + + P+LG F+
Sbjct: 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68
Query: 77 SDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVL 136
+D +G + ++ +G + + + ++HP S + L ++
Sbjct: 69 ADKVLGNRMAVMLGALLMAIGHVVLGAS----EIHP--------------SFLYLSLAII 110
Query: 137 VMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 196
V G GL C + + D D G F+ Y V +I
Sbjct: 111 VCGYGLFKSNVS----CLLGELYEPTDPRRDGG-------FSLMYAAGNVGSIIAPIACG 159
Query: 197 YIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 227
Y Q+ SW +GFG+ V MI +++FL G +
Sbjct: 160 YAQEEYSWAMGFGLAAVGMIAGLVIFLCGNR 190
|
Length = 493 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 36/201 (17%), Positives = 74/201 (36%), Gaps = 33/201 (16%)
Query: 32 ATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91
GLL+ + L ++ ++ + A I++ + LL ++SD + GR + +
Sbjct: 13 LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGL 71
Query: 92 IAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIR 151
+ LG L + + L +L++G LL +G G +
Sbjct: 72 LLFALGSLLLAFASSLW--------------------------LLLVGRFLLGLGGGALY 105
Query: 152 PCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIP 211
P + + F K + F + L+ + + +S+ W F I
Sbjct: 106 PAAAALIAEWFPP------KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159
Query: 212 TVLMIGAIILFLVGKKLYVLV 232
+L + +L L +L +L+
Sbjct: 160 AILGLLLALLLLFLLRLLLLL 180
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 35/204 (17%), Positives = 75/204 (36%), Gaps = 31/204 (15%)
Query: 26 ETFERLATIGLLANFMVYLLKEYHM--NQTSAANILNIWGGVTNFAPLLGAFISDTYIGR 83
E +ER + G+ VYL+++ + +Q A I + + +G + D G
Sbjct: 19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGT 78
Query: 84 FKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLL 143
KT+ I +LG + + S+ ++ GLG +
Sbjct: 79 KKTMVLGGIVLMLGHFMLAM--------------------------SIYPDLIFYGLGTI 112
Query: 144 SIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS 203
++G+G + ++ G F +Y + + I+ + I ++
Sbjct: 113 AVGSGLFKANPSSMVGKLYERGDMPRRDGG---FTLFYMSINIGSFISPLLAGVIAENYG 169
Query: 204 WVIGFGIPTVLMIGAIILFLVGKK 227
+ +GF + V M+ ++ F G+
Sbjct: 170 YHVGFNLAAVGMVIGLLTFFAGRH 193
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.93 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.92 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.92 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.92 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.92 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.92 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.91 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.91 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.91 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.91 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.91 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.91 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.91 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.9 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.9 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.9 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.9 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.9 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.9 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.9 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.9 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.9 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.9 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.9 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.9 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.89 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.88 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.88 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.88 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.88 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.88 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.88 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.88 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.88 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.87 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.87 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.87 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.87 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.86 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.86 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.85 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.85 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.85 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.84 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.84 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.84 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.83 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.83 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.83 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.83 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.82 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.82 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.82 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.82 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.8 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.78 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.76 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.75 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.75 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.74 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.74 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.74 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.73 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.73 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.73 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.73 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.72 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.72 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.71 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.7 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.7 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.69 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.69 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.67 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.66 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.66 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.64 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.62 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.62 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.59 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.56 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.41 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.39 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.37 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.37 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.36 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.34 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.34 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.34 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.34 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.33 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.33 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.32 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.3 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.3 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.29 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.28 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.28 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.27 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.27 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.26 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.26 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.26 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.25 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.24 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.24 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.24 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.23 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.22 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.22 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.22 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.21 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.2 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.19 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.19 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.18 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.18 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.18 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.17 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.16 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.16 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.16 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.15 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.13 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.13 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.11 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.1 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.1 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.07 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.06 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.04 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.04 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.02 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.02 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.02 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.01 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.01 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.0 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.0 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.0 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.98 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.98 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.98 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.92 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.92 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.91 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.91 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.91 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.9 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.89 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.89 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.88 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.88 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.88 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.87 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.85 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.83 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.82 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.8 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.8 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.8 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.79 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.75 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.74 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.72 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.71 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.69 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.69 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.68 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.67 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.66 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.62 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.61 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.57 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.56 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.56 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.51 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.47 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.47 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.44 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.42 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.42 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.42 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.41 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.39 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.33 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.29 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.24 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.21 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.2 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.2 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.18 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.16 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.16 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.09 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.04 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.02 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.01 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.01 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.93 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.88 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.88 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.83 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.82 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.72 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.72 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.7 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.69 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.68 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.67 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.65 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.65 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.6 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.47 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.42 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.33 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.33 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.08 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.08 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.05 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.97 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.96 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.6 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.54 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.42 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.25 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.2 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 96.03 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.03 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 95.84 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.4 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 95.23 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 95.17 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 94.37 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.39 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 92.23 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 91.83 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 90.16 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 89.14 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 88.65 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 88.45 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 87.08 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 82.64 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 80.94 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=412.34 Aligned_cols=535 Identities=45% Similarity=0.786 Sum_probs=479.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~ 91 (575)
+...|+.+.+++..+.+|++++|++..++..|+..++|.+...+...++.+.....+.++.+++++|-|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 92 IAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
++..+|.++..++..+|.+.++.| -.++....|..++..+...++.+.-+.++|.|+..|+..++.+|++++..+.++.
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~ 190 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVK 190 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhh
Confidence 999999999999999999888877 3334444788888888899999999999999999999999999999977777777
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHH
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYK 251 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (575)
++.+.++|+|+..++|..++.++..|+.+..||.+.|.++.++..+++++++...+.|+.+.|.+++.+.+.+++..+.+
T Consensus 191 ~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~ 270 (571)
T KOG1237|consen 191 GIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAF 270 (571)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred hhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHH
Q 008158 252 KRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIP 331 (575)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (575)
+++...+. ++++. .............++++++|++.++.+.+. ..+.+..+|+.++.+++++.|.+++.++
T Consensus 271 k~~~~~~~---~~~~~----~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~P 341 (571)
T KOG1237|consen 271 KRKAVVSL---DPEEL----YYDCTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLP 341 (571)
T ss_pred HHhccCCC---cchhc----cccccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCceehhhhhhhhhhhH
Confidence 98777665 43311 011111122334678899999988765333 5566778999999999999999999999
Q ss_pred HHHHHHHHHHhhccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHH
Q 008158 332 IWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRI 411 (575)
Q Consensus 332 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i 411 (575)
+|.....+++.+.|..+++..|...|++..++++++|++..+.+..+..++..|++|++..|+.+|..+++.+++.+.++
T Consensus 342 i~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqri 421 (571)
T KOG1237|consen 342 IWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRI 421 (571)
T ss_pred HHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhhee
Confidence 99999999999999999999999999999984499999999999999999999999999999999999987778999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccc--CCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHH
Q 008158 412 GIGMIFSILSMIVAGLVERGRRASAHL--HPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC 489 (575)
Q Consensus 412 ~ig~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~ 489 (575)
.+|+++..+++...+..|.+|.+.+.. +...+.|.+|++|+++++|++|.+..+...++..+++|++||+.+++++.+
T Consensus 422 g~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~ 501 (571)
T KOG1237|consen 422 GIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLL 501 (571)
T ss_pred eccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHH
Confidence 999999999999999999998887654 234678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCccc-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008158 490 SFGFASYLSSLLITIVHGVTARHGHPDWLT-NDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGI 558 (575)
Q Consensus 490 ~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~~~~~~ 558 (575)
...+|+.++..+...+...+.+ ..+|.. +++|.++++++|++.+....+....+.++.++|++++.+
T Consensus 502 t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~ 569 (571)
T KOG1237|consen 502 TVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK 569 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence 9999999999999988766533 458999 999999999999999999999999999998888877543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=323.42 Aligned_cols=459 Identities=19% Similarity=0.278 Sum_probs=347.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhC----CChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHH
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYH----MNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTI 87 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~----~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~ 87 (575)
...++|..+.+++.|+.||++|||+...+..|+..+++ +|++++..+.+.|....++.++++||++||++|+|+++
T Consensus 16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI 95 (498)
T COG3104 16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95 (498)
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 45589999999999999999999999999999999888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCc
Q 008158 88 TFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 167 (575)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 167 (575)
..+.+++.+|.+.++... ......++++.++.++|.|.++|++.++++|++|++++
T Consensus 96 ~lGail~~iGh~~L~~~~------------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp 151 (498)
T COG3104 96 VLGAILMAIGHLVLAISS------------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP 151 (498)
T ss_pred HHHHHHHHHHHHHHhccc------------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc
Confidence 999999999999999853 01345689999999999999999999999999999884
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCC--CCCcchhH---
Q 008158 168 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEP--EGSIFSGI--- 242 (575)
Q Consensus 168 ~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~--- 242 (575)
||-..++++|++.|+|++++|.+.+++.+.+||+..|.+.++-..++++.+++.+++...... ...+...-
T Consensus 152 ----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~ 227 (498)
T COG3104 152 ----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLL 227 (498)
T ss_pred ----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhh
Confidence 599999999999999999999999999999999999999999999999999988877644322 11111100
Q ss_pred ---HHHHHHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhh----hhhccCCCCCCCCCCCCccccc
Q 008158 243 ---GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKA----AMIVDNNELKPDGTPVNQWRLC 315 (575)
Q Consensus 243 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 315 (575)
...+....... . .. ......++.. .+......+ ....+|
T Consensus 228 ~~~~~~~~~~~~~~-~-~~-------------------------~l~~~~~~~~~~~~~i~~~~~~~----~~~~~~--- 273 (498)
T COG3104 228 PVLGGLVVMILAAL-L-TL-------------------------LLNQNTFSGVLLVISILIAIIYF----AEAFRS--- 273 (498)
T ss_pred hhHHHHHHHHHHHH-H-HH-------------------------HHHHHHHHHHHHHHHHHHHHHHH----HHHhcc---
Confidence 00000000000 0 00 0000000000 000000000 000011
Q ss_pred hhhHHHhHhhhhhhHHHHHHHHHHHHhhccccceeeeec-ccccccCCCccccCccccccchhHhhHhhhhcccchhHHH
Q 008158 316 SIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQA-MKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPA 394 (575)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~ 394 (575)
++.. +++++++..+++++...+||+.+.|.++....+. ...++... |+++++++++++|++.+++++|+.+++..++
T Consensus 274 ~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l 351 (498)
T COG3104 274 PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKL 351 (498)
T ss_pred CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHh
Confidence 1112 6899999999999999999999999998554443 44455534 7889999999999999999999999986665
Q ss_pred hhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhcc
Q 008158 395 LRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQ 474 (575)
Q Consensus 395 ~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~ 474 (575)
.++. | ..+...++.+|+++++.+++.+.......... ....|.+++++.++++++||.+++|...+++.+.
T Consensus 352 ~~~~--~--~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~-----~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~l 422 (498)
T COG3104 352 GRGN--K--QPSTPIKFALGLILAGLGFLILLLAGIWFGGP-----SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKL 422 (498)
T ss_pred hcCC--C--CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHh
Confidence 5553 2 24778899999999999999988774332110 2457899999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008158 475 FPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYR 553 (575)
Q Consensus 475 ~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~ 553 (575)
+|+.+++..++.+...+..++.++..+.+...+.. +..+......+|+.++.+.++..+..+...++.+
T Consensus 423 aP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~----------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~ 491 (498)
T COG3104 423 APPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTD----------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLN 491 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhceecccccccc----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999998887776321100 0011113356788888887776666666655433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=330.56 Aligned_cols=465 Identities=12% Similarity=0.157 Sum_probs=330.4
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~ 91 (575)
.+.++|.++.++..+++||+++|++.++++.|+++++|++.++++++.+.+....++.++++|+++||++||||+++.+.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999459999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 92 IAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
+++.++++.++++.+ ....++++|+++|+|.|+..|+..++++|++|+++ +
T Consensus 89 ~~~~~g~~~~~~~~~-------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~----~ 139 (489)
T PRK10207 89 IVLAIGYFMTGMSLL-------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD----P 139 (489)
T ss_pred HHHHHHHHHHHHhcc-------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc----h
Confidence 999999999988642 12235688999999999999999999999998765 3
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEee--CCCCCcchhHHHHH---
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLV--EPEGSIFSGIGQVL--- 246 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--- 246 (575)
+|.+.++++|++.|+|.++||.+++++.+..|||++|++.++..+++++.++..++++++. +|++++.+.....+
T Consensus 140 ~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~ 219 (489)
T PRK10207 140 RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLL 219 (489)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHH
Confidence 4788999999999999999999999999999999999997766666666666655444332 22222111000000
Q ss_pred ---HHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhH
Q 008158 247 ---VAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEV 323 (575)
Q Consensus 247 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (575)
.....-... .. .. .....-......+... ...++..+. +..++
T Consensus 220 ~~~~~~~~~~~~--~~---~~------------------~~~~~~~~~~~~i~~~----------~f~~~~~~~-~~~~r 265 (489)
T PRK10207 220 GSVVMIFVCAWL--MH---NV------------------EVANLVLIVLSIVVTI----------IFFREAFKL-DKTGR 265 (489)
T ss_pred HHHHHHHHHHHH--Hh---hh------------------hHHHHHHHHHHHHHHH----------HHHHHHhcC-CHHHH
Confidence 000000000 00 00 0000000000000000 000000011 12334
Q ss_pred hhhhhhHHHHHHHHHHHHhhccccceeeeecc-cccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCC
Q 008158 324 KCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHE 402 (575)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~ 402 (575)
++.+..+.++.....+|..+.|..+....+.. .++.... |+.+++++++++|++.+++..|+.+++ .+|+++|+
T Consensus 266 ~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l----~~rl~~r~ 340 (489)
T PRK10207 266 NKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGI----YTHLGSKG 340 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHH----HHHHhhCC
Confidence 55555666666677888888887664433332 3444554 778889999999999998999986654 88888776
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHH
Q 008158 403 GGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSI 482 (575)
Q Consensus 403 ~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~ 482 (575)
...++..++.+|+++.+++++.+....... ...+ ...+.+++++.+++.++||.+..|+.++++.+.+|++++|.
T Consensus 341 ~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~--~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~ 415 (489)
T PRK10207 341 KDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQ--GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGF 415 (489)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCCC--CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHH
Confidence 566888999999999998887654332110 0001 13567888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008158 483 ANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 555 (575)
Q Consensus 483 ~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~~~ 555 (575)
++|++++...+|+.++..+........ + ...+. ..+..+.++|...+++++++.+++++..++.++.
T Consensus 416 ~~g~~~l~~~ig~~lg~~l~~~~~~~~--~---~~~~~-~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 416 ILGMWFLTQAAAFLLGGYVATFTAVPD--N---ITDPL-ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc--c---cccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998886553100 0 00000 0112467888888888888777777766655443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=317.93 Aligned_cols=453 Identities=14% Similarity=0.182 Sum_probs=328.5
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhh--hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHH
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKE--YHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITF 89 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~ 89 (575)
..+++|.++.++..+++|++++|++.++++.|++++ +|++..+++++.+.+.++..++++++|+++||++|||+++..
T Consensus 5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 345778888899999999999999999999999988 999999999999999999999999999999994499999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccc
Q 008158 90 ASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 169 (575)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 169 (575)
+.++..++.+..+++. +...++++|++.|+|.|+..|+..++++|++|++++
T Consensus 85 ~~~~~~~g~~~~~~~~--------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~-- 136 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSI--------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM-- 136 (475)
T ss_pred HHHHHHHHHHHHHhcc--------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc--
Confidence 9999999998888754 445678899999999999999999999999987542
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHH----HH
Q 008158 170 VKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIG----QV 245 (575)
Q Consensus 170 ~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 245 (575)
.+|+++++++|++.|+|.++||.+++++.+.+||++.|++.++..+++++.++..++.+++.++++++..+.. ..
T Consensus 137 -~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (475)
T TIGR00924 137 -PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKL 215 (475)
T ss_pred -ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHH
Confidence 3488899999999999999999999999998899999999887766666666665554433222221111000 00
Q ss_pred -------HHHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhh-hhhhhhccCCCCCCCCCCCCccccchh
Q 008158 246 -------LVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFL-NKAAMIVDNNELKPDGTPVNQWRLCSI 317 (575)
Q Consensus 246 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (575)
+....+..... .. . . ..+..... ........... ..++ +
T Consensus 216 ~~~~~~~~~~~~~~~~~~-~~-----~---------~-------~~~~~~~~~~~~~~~~~~~~------~~~~----~- 262 (475)
T TIGR00924 216 LLALLAALALVFFCAWLM-HH-----V---------V-------IANILLMTVTLAVIIFFFRL------AFKP----R- 262 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-hc-----c---------H-------HHHHHHHHHHHHHHHHHHHH------HHhc----c-
Confidence 00000000000 00 0 0 00000000 00000000000 0000 0
Q ss_pred hHHHhHhhhhhhHHHHHHHHHHHHhhccccce-eeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhh
Q 008158 318 QQVEEVKCLIKIIPIWAAGIISLTSISQQGTF-TVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALR 396 (575)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ 396 (575)
.+..++++....+.+++...++|..+.|..+. ..++...++...+ ++++++++++++|++.+++..|+.+++ ..
T Consensus 263 ~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~----~~ 337 (475)
T TIGR00924 263 LDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMI----WT 337 (475)
T ss_pred CCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHH----HH
Confidence 11123344445677788888899999888774 3444445666665 788999999999999999999987654 55
Q ss_pred hhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCC
Q 008158 397 KITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP 476 (575)
Q Consensus 397 r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p 476 (575)
++.||..+.+...++.+|+++.+++++.+++...... .....+++++++++++.++||.+..|..++++.+.+|
T Consensus 338 ~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP 411 (475)
T TIGR00924 338 RLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFAD------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAP 411 (475)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 6655433346677889999999999988876532211 1124688999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008158 477 DHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYR 553 (575)
Q Consensus 477 ~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~ 553 (575)
+++||+++|++.+...+|+.+++.+.+...+.. +...+|...++++++..+++++..++.+
T Consensus 412 ~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 412 QRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ----------------GVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887664421 2345677777777777666666655443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=312.51 Aligned_cols=462 Identities=15% Similarity=0.222 Sum_probs=327.6
Q ss_pred CCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 008158 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (575)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l 93 (575)
.++|.++.++..++.+++++|++..+++.|+++++|+++.+++.+.+.+.....++++++|+++||++||||++..+.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 48889999999999999999999999999999999999999999999999999999999999999944999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 94 AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
..++.++++...+ +...++++..+.++|.|...++..++++|++|+++ .+|
T Consensus 86 ~~lg~lll~~~~~-------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~----~~R 136 (493)
T PRK15462 86 MAIGHVVLGASEI-------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD----PRR 136 (493)
T ss_pred HHHHHHHHHHhhc-------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC----ccc
Confidence 9999877664321 11234555666778888999999999999999764 348
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCC-CCCcchh--HHH-----H
Q 008158 174 NSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEP-EGSIFSG--IGQ-----V 245 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~--~~~-----~ 245 (575)
.++++++|...|+|+.++|.+++++.+.+||++.|.+.++..+++++.++..++++.+..+ ++++..+ ... .
T Consensus 137 ~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 216 (493)
T PRK15462 137 DGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWL 216 (493)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHH
Confidence 9999999999999999999999999998999999998877777777776665554433211 1111110 000 0
Q ss_pred HHHH-----HHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhh-hhhhccCCCCCCCCCCCCccccchhhH
Q 008158 246 LVAA-----YKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNK-AAMIVDNNELKPDGTPVNQWRLCSIQQ 319 (575)
Q Consensus 246 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (575)
.... ....... . +.....-. ..+... ....+...+..+
T Consensus 217 ~~~~~~~~~~~~~~~~--~-------------------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 260 (493)
T PRK15462 217 LVLLVATPALITVLFW--K-------------------------EWSVYALIVATIIGL---------GVLAKIYRKAEN 260 (493)
T ss_pred HHHHHHHHHHHHHHHH--H-------------------------HHHHHHHHHHHHHHH---------HHHHHHHHhcCC
Confidence 0000 0000000 0 00000000 000000 000000001123
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHhhccccc-eeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhh
Q 008158 320 VEEVKCLIKIIPIWAAGIISLTSISQQGT-FTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKI 398 (575)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~ 398 (575)
.+|++++...+.++.....||..+.|.++ ...+...++|+.++ ++++|+++++++|++.+++.+|+..++ ..|+
T Consensus 261 ~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~l----w~~l 335 (493)
T PRK15462 261 QKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWV----VKES 335 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHH----HHHH
Confidence 46788988899999999999999999888 44555677888887 899999999999999999999987775 6666
Q ss_pred hcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCch
Q 008158 399 TKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH 478 (575)
Q Consensus 399 ~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~ 478 (575)
.||++..+...++.+|+++++++++++.+....... + ...+.++++..++++++||.+..|...+.+.+.+|++
T Consensus 336 ~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~----~--~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~ 409 (493)
T PRK15462 336 VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAM----Y--GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPG 409 (493)
T ss_pred hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC----C--CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHH
Confidence 443333477889999999999999888776533111 1 1367888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHhhcccc
Q 008158 479 MKSIANSLLFCSF-GFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLN--IVYFLYCARRYRYK 555 (575)
Q Consensus 479 ~rg~~~g~~~~~~-~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~--~i~~~~~~~~~~~~ 555 (575)
.+|..+|+++... .+|+.+++.+.......... ++-... -+...+..+|...+.++++. ++.+.+..+..|.|
T Consensus 410 ~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (493)
T PRK15462 410 VTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD---ASGAIN-YSINAYIEVFDQITWGALACVGVVLMIWLYQALKFR 485 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC---cccccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999997744 68888887776654321000 000000 01124566777777666554 34444444444443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=310.12 Aligned_cols=458 Identities=15% Similarity=0.206 Sum_probs=323.9
Q ss_pred CCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 008158 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (575)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l 93 (575)
.++|.++.++..++++++++|++..+++.|+++++|++.++++++.+.+.......++++|+++||++|||+++..+.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 45577888999999999999999999999999999999999999998888887888889999999933999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 94 AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
+.++.+.++++.+ ....++++|+++|+|.|...++..++++|++|+++ ++|
T Consensus 98 ~~ig~~l~~~~~~-------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~----~~~ 148 (500)
T PRK09584 98 LAIGYALVAWSGH-------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD----PRL 148 (500)
T ss_pred HHHHHHHHHHhcc-------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc----hhh
Confidence 9999888887531 33457788999999999999999999999998755 346
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEee--CCCCCcchhHH------HH
Q 008158 174 NSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLV--EPEGSIFSGIG------QV 245 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~ 245 (575)
.++++++|++.++|.++||.+++++.+.+|||+.|++.++..+++++.+++.++.+++. ++++++..... ..
T Consensus 149 ~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (500)
T PRK09584 149 DGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGV 228 (500)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHH
Confidence 67899999999999999999999999989999999988876666666555544433322 12211111100 00
Q ss_pred HHHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhh
Q 008158 246 LVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKC 325 (575)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (575)
.......... ... . + ..+..-......... ..++.....+..++++
T Consensus 229 ~~~~~~~~~~-~~~----~----------~-------~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 274 (500)
T PRK09584 229 VALIAIATWL-LHN----Q----------E-------IARMALGVVALGIVV------------IFGKEAFAMKGAARRK 274 (500)
T ss_pred HHHHHHHHHH-Hhc----c----------h-------HHHHHHHHHHHHHHH------------HHHHHHhhcCHHHHHH
Confidence 0000000000 000 0 0 000000000000000 0000000112235666
Q ss_pred hhhhHHHHHHHHHHHHhhccccceeeeec-ccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCC
Q 008158 326 LIKIIPIWAAGIISLTSISQQGTFTVSQA-MKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGG 404 (575)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~ 404 (575)
....+.++.....+|..+.|.++.+..+. ...+.... ++.+++++++++|++.+++..|+.++. .+|+++|
T Consensus 275 ~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r--- 346 (500)
T PRK09584 275 MIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR--- 346 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---
Confidence 66667777888889999999888655433 23444554 777899999999999999999987665 6777666
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHH
Q 008158 405 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN 484 (575)
Q Consensus 405 ~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~ 484 (575)
.+..+++.+|+++++++++.+.....+.. .+ ...+.+++++.+++.++||.+..|...+++.+.+|+++||+++
T Consensus 347 ~~~~~~~~~G~~l~~l~f~~l~~~~~~~~----~~--~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~ 420 (500)
T PRK09584 347 LPMPHKFAIGMVLCSGAFLVLPLGAKFAN----DA--GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIM 420 (500)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcC----CC--CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHH
Confidence 36788999999999999998877643211 11 2467778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCC-CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008158 485 SLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTND-IDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 555 (575)
Q Consensus 485 g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~~~ 555 (575)
|++.+...+|+.+++.+....... .-..+. ...+++.++|...++++++..++++...++.++.
T Consensus 421 g~~~l~~a~g~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~ 485 (500)
T PRK09584 421 GSWFLTTAGAALIAGYVANLMAVP-------DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM 485 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888777543210 000000 1112467888888887776666666665555443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-26 Score=253.39 Aligned_cols=333 Identities=28% Similarity=0.534 Sum_probs=264.1
Q ss_pred HHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008158 31 LATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQL 110 (575)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~ 110 (575)
+++||+.+++..|+.+.+|++++++..+...+.....+.++++|+++|+++||+++++.+.++..+|..+.+++.. |..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence 3689999999999999999999999999999999999999999999999999999999999999999988887542 210
Q ss_pred CCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHH
Q 008158 111 HPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILI 190 (575)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 190 (575)
.+ ..+....+++..+.++|.|++.|+..++.+|++++++ +++|.++++++|++.|+|+++
T Consensus 80 ~~-----------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSli 139 (654)
T TIGR00926 80 GH-----------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLI 139 (654)
T ss_pred cc-----------------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHH
Confidence 00 1134457788899999999999999999999998643 346999999999999999999
Q ss_pred Hhhhhhhcccc-------ccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccCCCCCCC
Q 008158 191 TQTVLVYIQDS-------VSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMD 263 (575)
Q Consensus 191 ~~~v~~~l~~~-------~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (575)
++++.+++.+. .+|..+|.+++++.+++++++...+++++..+|.+++..+..+.+....+++......
T Consensus 140 s~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~---- 215 (654)
T TIGR00926 140 STIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE---- 215 (654)
T ss_pred HHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc----
Confidence 99999998743 3699999999999999999888888877666666665555555555554443211111
Q ss_pred CCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhh
Q 008158 264 HHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSI 343 (575)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (575)
. ....|+|++.... ..++++++|++++.+.+++...++|..+
T Consensus 216 -~-------------------~~~~~ld~a~~~~------------------~~~~V~evkrll~il~l~i~~~ifw~~~ 257 (654)
T TIGR00926 216 -H-------------------WPLHWLDYAKDKH------------------DIRMIRSTKRLLRVLVLFIPLPMFWALF 257 (654)
T ss_pred -c-------------------cchhHHHHhcccc------------------ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0123444432111 1245678899999999999999999999
Q ss_pred ccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHH
Q 008158 344 SQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMI 423 (575)
Q Consensus 344 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~ 423 (575)
.|..+.+..|...++..++ ++.+++.+++.++++.++++.|++++.+.|..+|.+. ..++..++.+|+++++++++
T Consensus 258 ~Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~ 333 (654)
T TIGR00926 258 DQQGSRWTLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFF 333 (654)
T ss_pred hcchhHHHHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHH
Confidence 9999988888777777776 7889999999999999999999998777776665432 25789999999999999987
Q ss_pred HHHHhHh
Q 008158 424 VAGLVER 430 (575)
Q Consensus 424 ~~~~~~~ 430 (575)
+..+.+.
T Consensus 334 va~~ve~ 340 (654)
T TIGR00926 334 VAALVQL 340 (654)
T ss_pred HHHHHHH
Confidence 7765543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=228.54 Aligned_cols=378 Identities=14% Similarity=0.017 Sum_probs=247.9
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~ 91 (575)
..+-+|.+..+....++..++.......++.|+++++|.|..+.+++.+.+.++..+++++.|+++||+ ||||++..+.
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~ 88 (399)
T PRK05122 10 GLRLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGL 88 (399)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHH
Confidence 344556667777788888888777788889999999999999999999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 92 IAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
++..++.+.+.++...+. ....+...+++.|+++|+|.+...+....++.|.+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~----- 145 (399)
T PRK05122 89 CGCALSGLLYLLAGLLAA------------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH----- 145 (399)
T ss_pred HHHHHHHHHHHHhhhhhc------------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh-----
Confidence 988887776655431000 001145678999999999999999999999999998877
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHH
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYK 251 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (575)
|++++++.....++|..+|+.+++++.+..||++.+++.++..++.++.. ++. ++.++++++
T Consensus 146 -r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~------------- 207 (399)
T PRK05122 146 -TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RPR-PAVPPVKGE------------- 207 (399)
T ss_pred -hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hcC-CCCCCCCcc-------------
Confidence 99999999999999999999999999888999998876555443322221 111 100000000
Q ss_pred hhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHH
Q 008158 252 KRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIP 331 (575)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (575)
+ . + ..+..|+.+....
T Consensus 208 -------~-----~---------------------------------------------~-------~~~~~~~~~~~~~ 223 (399)
T PRK05122 208 -------R-----L---------------------------------------------P-------FRRVLGRVWPYGM 223 (399)
T ss_pred -------c-----h---------------------------------------------h-------HHHHHHHHHHHHH
Confidence 0 0 0 0000111111110
Q ss_pred HH-HHHHHHHHhhccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHH
Q 008158 332 IW-AAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQR 410 (575)
Q Consensus 332 ~~-~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~ 410 (575)
.+ .....+.......+.+.. +.... ..+.......++.++..++. .++.||.+ +++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~----g~l~~r~~-------~~~~ 281 (399)
T PRK05122 224 GLALASIGFGTIATFITLYYA------ARGWD-----GAALALTLFGVAFVGARLLF----GNLINRLG-------GLRV 281 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------Hcccc-----cchHHHHHHHHHHHHHHHHH----HHHHHHhc-------cHHH
Confidence 01 111111111111111110 10000 01111122233333333332 22355543 2344
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHH
Q 008158 411 IGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCS 490 (575)
Q Consensus 411 i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~ 490 (575)
+.++..+..++.+..... .+.+..++..++.|++.+...+.......+..|++.||++.|+++..
T Consensus 282 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 346 (399)
T PRK05122 282 AIVSLLVEILGLLLLWLA---------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVF 346 (399)
T ss_pred HHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 566666666665554432 23444556677888988888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 008158 491 FGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYC 548 (575)
Q Consensus 491 ~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~ 548 (575)
..+|..+++.+.+.+.+.. +++..|.+.+++.+++.+..+++
T Consensus 347 ~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 347 LDLSLGITGPLAGLVASWF----------------GYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887643 45677888888777776665554
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-25 Score=231.07 Aligned_cols=371 Identities=12% Similarity=0.060 Sum_probs=236.8
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
|...+.+....++.....| +...+.+.+.+++|.|.++.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 8 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEF-VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHH-HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence 4333333333444333333 233344678889999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
++++.+++++ +.+.+++.|+++|++.+...+...+++.|++|+++ |++
T Consensus 86 ~~~~~~~~~~--------------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 133 (390)
T PRK03545 86 ASHVLSALAW--------------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQ 133 (390)
T ss_pred HHHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhh
Confidence 9999988875 67889999999999999988999999999999877 999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcc
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRL 255 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (575)
+++++..+.++|..++|.+++.+.+..|||+.|++.++..++..+..+...|+. +++++. . .+
T Consensus 134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~----~~~~~~-~-~~----------- 196 (390)
T PRK03545 134 ALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL----PSEHSG-S-LK----------- 196 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCCcc-h-HH-----------
Confidence 999999999999999999999998888999999988776555544433322211 110000 0 00
Q ss_pred cCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhh-HHHHH
Q 008158 256 TLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKI-IPIWA 334 (575)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 334 (575)
+.. +..++ +.++.. ...+.
T Consensus 197 -----------------------------------~~~------------------------~~~~~-~~~~~~~~~~~~ 216 (390)
T PRK03545 197 -----------------------------------SLP------------------------LLFRR-PALVSLYLLTVV 216 (390)
T ss_pred -----------------------------------HHH------------------------HHHhC-cHHHHHHHHHHH
Confidence 000 00000 111111 11111
Q ss_pred HHHHHHHhhccccceeeeecccccccCCCcccc-CccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHH
Q 008158 335 AGIISLTSISQQGTFTVSQAMKMNRHLGPKFQI-PPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGI 413 (575)
Q Consensus 335 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~i 413 (575)
.....+........+. ....+ .+. ..+.......++.++...+ ..|+.+|. ++ +.+.+
T Consensus 217 ~~~~~~~~~~~~~~~l-------~~~~g--~s~~~~~~~~~~~~~~~~~g~~~--------~g~l~dr~---~~-~~~~~ 275 (390)
T PRK03545 217 VVTAHFTAYSYIEPFV-------QQVAG--LSENFATLLLLLFGGAGIIGSVL--------FSRLGNRH---PS-GFLLI 275 (390)
T ss_pred HHHHHHHHHHHHHHHH-------HHhcC--CCccHHHHHHHHHHHHHHHHHHH--------HHHHhhcc---ch-hHHHH
Confidence 1111111111111111 11111 100 0111222223333333332 33333331 11 23444
Q ss_pred HHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHH
Q 008158 414 GMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGF 493 (575)
Q Consensus 414 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~l 493 (575)
+..+..++....... ..+.+.+++..++.|++.....+.....+.+..| +.|++++|+.+....+
T Consensus 276 ~~~~~~~~~~~l~~~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~ 340 (390)
T PRK03545 276 AIALLLVCLLLLLPA--------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNI 340 (390)
T ss_pred HHHHHHHHHHHHHHH--------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHH
Confidence 555444444333221 1244455566677788887777777888887776 5889999999999999
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008158 494 ASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 549 (575)
Q Consensus 494 g~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~ 549 (575)
|..+++.+.+.+.|.. ++...|...+++.+++++..+...
T Consensus 341 g~~~G~~~~G~~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 341 GIGAGALLGNQVSLHL----------------GLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHhcc----------------ChhHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999988743 456778888888888877766654
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-24 Score=224.59 Aligned_cols=373 Identities=12% Similarity=0.042 Sum_probs=238.9
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
+..+.+.+..++..++.....+.++.|+++++|+|..+.+++.+.+.++..+++++.|+++||+ ||||+++.+.++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGL 93 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHH
Confidence 3444455566677676666677888899999999999999999999999999999999999995 999999999888777
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
+.+........+. ....+...++++|+++|++.+...+...+++.|.+|+++ |+++
T Consensus 94 ~~~~~~~~~~~~~------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a 149 (392)
T PRK12382 94 AGLAYLLAAILPV------------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKV 149 (392)
T ss_pred HHHHHHhhhcccc------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchh
Confidence 6654433211110 001266789999999999999988888889999999877 9999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhccc
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLT 256 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (575)
+++++.+.++|..++|.+++++.+.+||++.+.+..+..++.. .+.++ .++.+++++
T Consensus 150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~------------------- 206 (392)
T PRK12382 150 MSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFNGT-VRKVPAHAG------------------- 206 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHHHh-ccCCCCCcc-------------------
Confidence 9999999999999999999999888999987765444322222 11111 111110000
Q ss_pred CCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhh-HHHHHH
Q 008158 257 LPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKI-IPIWAA 335 (575)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 335 (575)
+ ++ +. .+..+..++. ......
T Consensus 207 --~---~~-----------------------~~------------------------------~~~~~~~~~~~~~~~l~ 228 (392)
T PRK12382 207 --E---RP-----------------------SL------------------------------WSVVGLIWKPGLGLALQ 228 (392)
T ss_pred --c---Cc-----------------------hH------------------------------HHHHHHHHHhHHHHHHH
Confidence 0 00 00 0000111110 000111
Q ss_pred HHHHHHhhccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHH
Q 008158 336 GIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGM 415 (575)
Q Consensus 336 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~ 415 (575)
...+.......+.+.. +.... ..+.......++.++..++. ..+.||.++| +.+..+.
T Consensus 229 ~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~----g~l~~r~g~~-------~~~~~~~ 286 (392)
T PRK12382 229 GVGFAVIGTFVSLYFA------SKGWA-----MAGFTLTAFGGAFVLMRVLF----GWMPDRFGGV-------KVAIVSL 286 (392)
T ss_pred HHHHhHHHHHHHHHHH------hcCCc-----hhHHHHHHHHHHHHHHHHHH----HHHHHhcCCC-------eehHHHH
Confidence 1111111111111100 11110 01111122233333333332 2336665444 2355566
Q ss_pred HHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHH
Q 008158 416 IFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFAS 495 (575)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~ 495 (575)
.+..++.+..... .+.+...+..++.+++.+...+.......+.+|++.||++.|+.++...+|.
T Consensus 287 ~~~~~~~~~~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 351 (392)
T PRK12382 287 LVETVGLLLLWLA---------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAY 351 (392)
T ss_pred HHHHHHHHHHHHc---------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 6666665554432 1334455566778888888888888888999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 008158 496 YLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYC 548 (575)
Q Consensus 496 ~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~ 548 (575)
.+++.+.+.+.|.. ++...|.+.+++.+++.+..++.
T Consensus 352 ~ig~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 352 GVSGPLAGMLATSF----------------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHh----------------CchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988753 34677888888777776665544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=227.95 Aligned_cols=168 Identities=12% Similarity=0.134 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008158 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGML 99 (575)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~ 99 (575)
.+++...++.+++.+.+.+.++.|+++++|+|..+.|++.+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 6677888899999999999999999999999999999999999999999999999999995 999999999999999998
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHH
Q 008158 100 TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 179 (575)
.+..++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++
T Consensus 92 ~~~~~~--------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~ 139 (400)
T PRK11646 92 TMAIAH--------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSL 139 (400)
T ss_pred HHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHH
Confidence 887754 56778999999999999888988999999999877 9999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHH
Q 008158 180 YYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 180 ~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~ 221 (575)
.+...++|..+||.+++++. .+|||+.|++.++..++..++
T Consensus 140 ~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 140 LMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 689999999877665544433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=223.20 Aligned_cols=175 Identities=13% Similarity=0.054 Sum_probs=148.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~ 91 (575)
.+.+|..+.......+++.+..+.. ....+.+.+++|+|+.+.+++.+.+.++..++.++.|+++||+ |||+++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 87 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSA-GVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSV 87 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHH
Confidence 3456666666667777777665543 4445667788999999999999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 92 IAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
++..++.+.++++. +.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 88 ~~~~~~~~~~~~~~--------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----- 136 (406)
T PRK11551 88 ALFGLFSLATAQAW--------------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL----- 136 (406)
T ss_pred HHHHHHHHHHHHhc--------------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH-----
Confidence 99888888777754 56778999999999999999999999999999877
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHH
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 220 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~ 220 (575)
|++++++++.+.++|..+++.+++.+.+..+||+.|++.+++.++..+
T Consensus 137 -r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK11551 137 -RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVP 184 (406)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888999999887665444443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-24 Score=225.42 Aligned_cols=392 Identities=14% Similarity=0.014 Sum_probs=238.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008158 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLT 100 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~ 100 (575)
.++..+++..++.......++. +.++++.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+..+..++.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~ 98 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPV-QIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIG 98 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHH
Confidence 4444455555554333344444 4557788999999999999999999999999999995 9999999888887777666
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHH
Q 008158 101 VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWY 180 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 180 (575)
.+.....+ ..+.+.+++.|++.|++.+...+...+++.|.+|+++ |+++.++.
T Consensus 99 ~~~~~~~~---------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 151 (417)
T PRK10489 99 LALNAFLP---------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAIT 151 (417)
T ss_pred HHHHHHcC---------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHH
Confidence 54321000 1156778889999999988888888899999998866 99999999
Q ss_pred HHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccCCCC
Q 008158 181 YTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQG 260 (575)
Q Consensus 181 ~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (575)
+...++|..+||.+++++.+..+|++.|++.++..++..+..+..++. ++++.+..+ +.
T Consensus 152 ~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~----------------~~- 210 (417)
T PRK10489 152 MLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPAL----PPPPQPREH----------------PL- 210 (417)
T ss_pred HHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCC----CCCCccccc----------------ch-
Confidence 999999999999999999888899999988776665555444332211 111000000 00
Q ss_pred CCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHHHHH
Q 008158 261 QMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISL 340 (575)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (575)
.+..+ .+ ......+.+ +.. +..... .
T Consensus 211 --------------------------~~~~~-------------------~~-----~~~~~~~~~-~~~--~~~~~~-~ 236 (417)
T PRK10489 211 --------------------------RSLLA-------------------GF-----RFLLASPVV-GGI--ALLGGL-L 236 (417)
T ss_pred --------------------------HHHHH-------------------HH-----HHHHcChHH-HHH--HHHHHH-H
Confidence 00000 00 000000111 111 111011 0
Q ss_pred HhhccccceeeeecccccccCCCccc-cCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHH
Q 008158 341 TSISQQGTFTVSQAMKMNRHLGPKFQ-IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSI 419 (575)
Q Consensus 341 ~~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~ 419 (575)
......... .+.+.....+ .+ ...+.+.....++.++...+ ..++.+|. ++.+.+..+..+..
T Consensus 237 ~~~~~~~~~---~p~~~~~~~g--~~~~~~g~~~~~~~~g~~ig~~~--------~~~l~~~~---~~~~~l~~~~~~~~ 300 (417)
T PRK10489 237 TMASAVRVL---YPALADEVWQ--MGAAQIGLLYAAVPLGAALGALT--------SGWLAHSA---RPGLLMLLSTLGSF 300 (417)
T ss_pred HHHHhHHHh---hHHHHHhccC--CChhHhHHHHHHHHHHHHHHHHH--------HHHhhhcc---CcchHHHHHHHHHH
Confidence 001111111 1111122121 10 01222233333444444333 22332221 22234555666666
Q ss_pred HHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHH
Q 008158 420 LSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSS 499 (575)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~ 499 (575)
++++.+... .+++......++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++
T Consensus 301 ~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~ 365 (417)
T PRK10489 301 LAVGLFGLM---------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGA 365 (417)
T ss_pred HHHHHHHcc---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHH
Confidence 665544322 24444555667778888777788888999999999999999999999999999999
Q ss_pred HHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 008158 500 LLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLED 563 (575)
Q Consensus 500 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~~~~~~~~~~~ 563 (575)
.+.+++.+.. +....+...+++.++..++.+...+++|++++++.+++
T Consensus 366 ~l~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 366 ALLGGLGAMM----------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HHHHHHHHHh----------------chhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 9999988753 23345555565555554555555566666555554444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=229.21 Aligned_cols=176 Identities=15% Similarity=0.068 Sum_probs=146.4
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
|..+..+.+..++..+... +.....+.+.+++|.+.++.+|+.+.|.++...+.++.|+++||+ |||++++.+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~t-iv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDAT-VLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 4444555555555555533 444555666789999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCC-CCCCcccccchh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF-DATTDEGVKGIN 174 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~ 174 (575)
++++++++++ +.+.++++|+++|+|.++..+.....+.+.+ |+++ |+
T Consensus 83 ~~~~~~~~a~--------------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~ 130 (495)
T PRK14995 83 LASLAAAFSP--------------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RN 130 (495)
T ss_pred HHHHHHHHcC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HH
Confidence 9999999875 6788999999999999998888888787776 4444 99
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhc
Q 008158 175 SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 175 ~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
++++++....++|..+||.+++++.+..||||.|++...+.++.+++.+..
T Consensus 131 ~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 131 MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARY 181 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998776655555544433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-23 Score=211.92 Aligned_cols=381 Identities=12% Similarity=0.071 Sum_probs=257.2
Q ss_pred cccccCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHH
Q 008158 8 KDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTI 87 (575)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~ 87 (575)
.+++.+..|..++.+.+..|.-...-|.... +.+.+.+++|.|..++|+++++|.++..++.|+...+.||+ .||+++
T Consensus 4 ~~~~~~~~~~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lL 81 (394)
T COG2814 4 PATARKPMWLALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLL 81 (394)
T ss_pred cccccccchHHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHH
Confidence 3345566777777766666666555554443 44567889999999999999999999999999999999995 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCc
Q 008158 88 TFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 167 (575)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 167 (575)
+..+.+++++.++++++. ++..++++|++.|+..|.+.+...++.+|..|+++
T Consensus 82 l~~l~lFi~~n~l~alAp--------------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~- 134 (394)
T COG2814 82 LGLLALFIVSNLLSALAP--------------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK- 134 (394)
T ss_pred HHHHHHHHHHHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-
Confidence 999999999999999987 78899999999999999999999999999999988
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHH
Q 008158 168 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLV 247 (575)
Q Consensus 168 ~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (575)
|+++.++...+.+++..+|..++.++.+.+|||..|+..+.+.++.++..+...| +++.+++.+. . .+
T Consensus 135 -----~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~-~-~~--- 202 (394)
T COG2814 135 -----RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPG-P-LR--- 202 (394)
T ss_pred -----hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCc-c-hh---
Confidence 9999999999999999999999999999999999999888887777776665544 1111110000 0 00
Q ss_pred HHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhh
Q 008158 248 AAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLI 327 (575)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (575)
++.....+++++
T Consensus 203 --------------------------------------------------------------------~~~~~l~~p~v~ 214 (394)
T COG2814 203 --------------------------------------------------------------------TLLRLLRRPGVL 214 (394)
T ss_pred --------------------------------------------------------------------HHHHHhcCchHH
Confidence 000000011111
Q ss_pred h-hHHHHHHHHHHHHhhccccceeeeecccccccCCCcccc-CccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCC
Q 008158 328 K-IIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQI-PPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGI 405 (575)
Q Consensus 328 ~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~ 405 (575)
. ....++.....+..|.+..++. +... ++.. .-+......+++..+...+.+++ .||
T Consensus 215 ~~l~~t~l~~~g~F~~ftYi~P~L-------~~v~--g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl----~dr-------- 273 (394)
T COG2814 215 LGLLATFLFMTGHFALYTYIRPFL-------ESVA--GFSVSAVSLVLLAFGIAGFIGNLLGGRL----ADR-------- 273 (394)
T ss_pred HHHHHHHHHHcchhhhHHhHHHHH-------HHcc--CCCHhHHHHHHHHHHHHHHHHHHHHhhh----ccc--------
Confidence 1 1111122222233333322222 1111 1111 11222334455555554443333 444
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCC--chhHHHH
Q 008158 406 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP--DHMKSIA 483 (575)
Q Consensus 406 ~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p--~~~rg~~ 483 (575)
+.++.+.....+..+.++.+.... .+.+......++.+++... ..+.+..+.++ ++.++.+
T Consensus 274 ~~~~~l~~~~~l~a~~~l~l~~~~--------------~~~~~~~~~~~~wg~a~~~---~~~~~~~~~a~~~p~~~~~a 336 (394)
T COG2814 274 GPRRALIAALLLLALALLALTFTG--------------ASPALALALLFLWGFAFSP---ALQGLQTRLARLAPDAADLA 336 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhc--------------chHHHHHHHHHHHHHHhhh---hhhHHHHHhcccCCCchHHH
Confidence 233445555566666666655431 2333444444444544444 44444444444 6779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008158 484 NSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 551 (575)
Q Consensus 484 ~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~ 551 (575)
.+++....++|..+|..+.+.+.|.. ++....++.+.+.+++.+..+...++
T Consensus 337 ~sl~~aa~nlgia~GA~lGG~v~~~~----------------g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 337 GSLNVAAFNLGIALGAALGGLVLDAL----------------GYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----------------chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998743 66788888888888887777765443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=223.55 Aligned_cols=166 Identities=12% Similarity=0.083 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
+...+...++..+..+.... ..+.+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 25 LITMYLGYALFYFTRKSFNA-AMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIIN 102 (434)
T ss_pred HHHHHHHHHHHHHhhhhHHH-hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHH
Confidence 33334444444443333334 44555667999999999999999999999999999999995 99999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
++.+++. +.+.+++.|++.|++.|...+....++.|++|+++ |+++++
T Consensus 103 ~~~~~~~--------------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~ 150 (434)
T PRK11663 103 ILFGFSS--------------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWA 150 (434)
T ss_pred HHHHHHh--------------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHH
Confidence 9888865 66778889999999999989999999999999877 999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHH
Q 008158 179 WYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGA 218 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~ 218 (575)
+++.+.++|..+++.+++++.+.+|||+.|++.++..++.
T Consensus 151 ~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 151 IWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999998899999999877654433
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=220.68 Aligned_cols=175 Identities=12% Similarity=0.170 Sum_probs=152.3
Q ss_pred CCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 008158 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (575)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l 93 (575)
...|+.+.++...++...+.+.+.++++.|+++++|+|..+.|++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 3455677778888999999898999999999999999999999999999999999999999999995 999999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 94 AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
..++.+..++++ +.+.+++.|.+.|.+.+...++..++..|.+|+++ |
T Consensus 83 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 130 (395)
T PRK10054 83 FASGFIAIPLVN--------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------K 130 (395)
T ss_pred HHHHHHHHHHHh--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------H
Confidence 888888887765 55667778888888878888888999999998776 9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHH
Q 008158 174 NSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~ 222 (575)
++.+++.+...++|..++|.+++++.+ .+|+..|++.+++.++.+++.
T Consensus 131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875 799999998777666654443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=231.24 Aligned_cols=179 Identities=10% Similarity=0.039 Sum_probs=143.4
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~ 91 (575)
++.+|+.+..+....+++.+.. .+...+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~-~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~l 239 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEV-FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICL 239 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 3444444444444444443332 3455667788889999999999999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 92 IAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
++..++.++++++. +.+.++++|++.|+|.|+..+...++++|.+|++.
T Consensus 240 il~~i~~ll~afa~--------------------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~----- 288 (742)
T TIGR01299 240 SVNGFFAFFSSFVQ--------------------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK----- 288 (742)
T ss_pred HHHHHHHHHHHHHh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence 99999998888765 57789999999999999999999999999999877
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhccc-------------cccchhHhHHHHHHHHHHHHHHHh
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQD-------------SVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~-------------~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
|+..++++..+..+|.++++.++.++.. ..+||+.|++.++..++.+++.++
T Consensus 289 -Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 289 -RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877655432 236899888877766655554444
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-23 Score=222.50 Aligned_cols=177 Identities=13% Similarity=0.021 Sum_probs=148.6
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
+..+.+....++..+..+.+...++.+. +++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence 3455566667777777776666666665 57999999999999999999999999999999995 999999999989888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
+.+.+.++. +.+.+++.|+++|++.++..+...+++.|.+|+++ |+++
T Consensus 88 ~~~~~~~~~--------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~ 135 (471)
T PRK10504 88 GSLFCALSG--------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAA 135 (471)
T ss_pred HHHHHHHhC--------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 888877654 56778999999999999999999999999999766 9999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccc
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 227 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~ 227 (575)
+++.+...++|..+||.+++++.+..|||+.|++..+...+..++.....+
T Consensus 136 ~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 136 MTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999899999999877665555555444333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=217.74 Aligned_cols=156 Identities=8% Similarity=-0.026 Sum_probs=125.8
Q ss_pred hhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 008158 35 GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPK 114 (575)
Q Consensus 35 ~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (575)
..+....+.+++++|+|.++.+++.+.+.+++.+++++.|+++||+ |||+++..+......+.. ......
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~~-------- 77 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDPF-------- 77 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHhc--------
Confidence 3456667778889999999999999999999999999999999995 999987665555544432 222211
Q ss_pred CCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhh
Q 008158 115 CDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTV 194 (575)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v 194 (575)
+...+++.|+++|+|.+.. +......+|++|+++ |++++++.+.+.++|..+++.+
T Consensus 78 -----------------~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~ 133 (368)
T TIGR00903 78 -----------------NYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAA 133 (368)
T ss_pred -----------------cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999864 455566799999877 9999999999999999999999
Q ss_pred hhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 195 LVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 195 ~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
++++.+.+|||+.|++.+++.++..+++++
T Consensus 134 ~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 134 GLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 999998899999999866665554444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=219.28 Aligned_cols=156 Identities=16% Similarity=0.102 Sum_probs=138.6
Q ss_pred hHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008158 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKC 115 (575)
Q Consensus 36 ~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (575)
......+++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.+.++++.
T Consensus 12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~---------- 80 (399)
T TIGR00893 12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG---------- 80 (399)
T ss_pred hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc----------
Confidence 345566778999999999999999999999999999999999995 999999999999999998888865
Q ss_pred CCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhh
Q 008158 116 DVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL 195 (575)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~ 195 (575)
+.+.+++.|++.|++.+...+....++.|.+|+++ |++.+++.+...++|..+++.++
T Consensus 81 ----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~ 138 (399)
T TIGR00893 81 ----------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLV 138 (399)
T ss_pred ----------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHH
Confidence 67789999999999999999999999999999877 99999999999999999999999
Q ss_pred hhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 196 VYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 196 ~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
+++.+..+||+.|++.++..++..++.++
T Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 139 GWILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 99888899999999877665555444433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=225.74 Aligned_cols=191 Identities=12% Similarity=0.047 Sum_probs=141.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhh--------CCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccc
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEY--------HMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGR 83 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--------~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr 83 (575)
.+.+.+..+......+.+.+... +.....+.+++.+ |.+..+.+++.+++.++..++++++|+++||+ ||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Gr 84 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTA-VISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GR 84 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccc-eehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence 34455555555555444444322 3333334455555 88999999999999999999999999999995 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCC
Q 008158 84 FKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 163 (575)
Q Consensus 84 r~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~ 163 (575)
|++++.+.+++.++.+.++++...-.... ..+......++++|+++|++.|+..+...++++|++|
T Consensus 85 r~~~~~~~~l~~i~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~ 150 (479)
T PRK10077 85 RDSLKIAAVLFFISALGSAWPEFGFTSIG--------------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP 150 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccc--------------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC
Confidence 99999999999988887776321000000 0011245678899999999999999999999999999
Q ss_pred CCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhcc--------ccccchhHhHHHHHHHHHHHHHHHh
Q 008158 164 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 164 ~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~--------~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
+++ |++++++...+..+|..+++.+++.+. +.+|||+.|++.++..++.++..++
T Consensus 151 ~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 151 AHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred hhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHc
Confidence 887 999999999999999999887765432 4579999999877666555544443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=219.00 Aligned_cols=388 Identities=13% Similarity=0.081 Sum_probs=241.6
Q ss_pred cccCCCcch-hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhh-----HHHHHHHHHHHHHHHhhhhHHHhhhcccc
Q 008158 10 QKKPGGWKA-MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTS-----AANILNIWGGVTNFAPLLGAFISDTYIGR 83 (575)
Q Consensus 10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-----~~~i~~~~~~~~~~~~~~~G~laD~~~Gr 83 (575)
+..+.+|+. ...+....++..+++......++.|++ ++|++..+ .+++.+++.+...++.++.|+++||+ ||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~ 83 (408)
T PRK09874 6 NDTPINWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GR 83 (408)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-Cc
Confidence 455555655 444556677777776666677777775 68888655 38889999999999999999999995 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCC
Q 008158 84 FKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 163 (575)
Q Consensus 84 r~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~ 163 (575)
|+++..+.++..++.+.+..+. +.+.+++.|++.|++.+ ..+...+++.|.+|
T Consensus 84 r~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 136 (408)
T PRK09874 84 KIMLLRSALGMGIVMVLMGLAQ--------------------------NIWQFLILRALLGLLGG-FVPNANALIATQVP 136 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcC
Confidence 9999999998888888877654 56778999999999865 45777788899998
Q ss_pred CCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHH
Q 008158 164 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIG 243 (575)
Q Consensus 164 ~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (575)
+++ |+++.++++...++|..++|.+++++.+..+||+.|++.+++.++..+..++..++..+ +.+++....
T Consensus 137 ~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~- 207 (408)
T PRK09874 137 RNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ--PVSKKEMLH- 207 (408)
T ss_pred Hhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhhH-
Confidence 877 99999999999999999999999999888899999998777655554443332221110 000000000
Q ss_pred HHHHHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhH
Q 008158 244 QVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEV 323 (575)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (575)
.+ +... ..++.
T Consensus 208 ------~~---------------------------------------~~~~------------------------~~~~~ 218 (408)
T PRK09874 208 ------MR---------------------------------------EVVT------------------------SLKNP 218 (408)
T ss_pred ------HH---------------------------------------HHHH------------------------hCcCC
Confidence 00 0000 00000
Q ss_pred hhhhhhHHHHHHHHHHHHhhccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCC
Q 008158 324 KCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEG 403 (575)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~ 403 (575)
+......... ...........+....+......... ......+.+..+..++.++..+... .+.||.++|
T Consensus 219 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~l~~~~~~~~~g----~l~dr~g~~-- 288 (408)
T PRK09874 219 KLVLSLFVTT---LIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVPGVAALLSAPRLG----KLGDRIGPE-- 288 (408)
T ss_pred chHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccccc--
Confidence 0000000000 01111111110110000000000000 0000011111222233333333322 235555433
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHH
Q 008158 404 GITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA 483 (575)
Q Consensus 404 ~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~ 483 (575)
+.+.++..+..++.+..... .+.+...+..++.|++.+...|...+.+.+..|++.+|+.
T Consensus 289 -----~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 348 (408)
T PRK09874 289 -----KILITALIFSVLLLIPMSFV---------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRI 348 (408)
T ss_pred -----hhHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceee
Confidence 34555555555544443322 1344455566778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008158 484 NSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCAR 550 (575)
Q Consensus 484 ~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~ 550 (575)
.++.+....+|..+++.+.+.+.+.. ++...|.+.+++.+++.+..+...+
T Consensus 349 ~~~~~~~~~~g~~~gp~~~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 349 FSYNQSFRDIGNVTGPLMGAAISANY----------------GFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred ehHHHHHHHHHHHhhHHHHHHHHhhc----------------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887643 4567888888888887666655433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=228.26 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=130.4
Q ss_pred HHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 008158 37 LANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCD 116 (575)
Q Consensus 37 ~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (575)
.....+.+.+++|+|.++.|++.+.+.+++.++.++.|+++||+ |||+++..+.++..++++..+....
T Consensus 48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~---------- 116 (467)
T PRK09556 48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG---------- 116 (467)
T ss_pred hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh----------
Confidence 34456778899999999999999999999999999999999995 9999999988888877776665310
Q ss_pred CCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 008158 117 VAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 196 (575)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~ 196 (575)
....+.+.+++.|++.|++.+...|....+++|++|+++ |+++++++..+.++|..+++.+..
T Consensus 117 -----------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 117 -----------SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred -----------cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHH
Confidence 001167889999999999999999999999999999988 999999999999999999998887
Q ss_pred hccccc---cchhHhHHHHHHHHHHHHHHH
Q 008158 197 YIQDSV---SWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 197 ~l~~~~---gw~~~f~~~~~~~~i~~~~~~ 223 (575)
++.+.. +||..|.+.++..++..++.+
T Consensus 180 ~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 180 WGANYFFDGHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred HHHHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence 665532 699888876665544444333
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-23 Score=218.41 Aligned_cols=177 Identities=11% Similarity=0.008 Sum_probs=147.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 92 (575)
+.+|+....+.+..+++.+... ...+..+.+++++|++.++.+++.+++.++..+++++.|+++||+ |||+++..+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~ 81 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRI-NIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMV 81 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhh-hHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHH
Confidence 3456666655555555555433 344555689999999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 93 AAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
++.++++.+++++ +.+.+++.|++.|++.++..|....++.|++|+++
T Consensus 82 ~~~~~~~~~~~~~--------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------ 129 (412)
T TIGR02332 82 LWGIASTATMFAT--------------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------ 129 (412)
T ss_pred HHHHHHHHHHHhc--------------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------
Confidence 9999999998875 56779999999999999999998899999999877
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhccc------cccchhHhHHHHHHHHHHHHHHH
Q 008158 173 INSFFNWYYTTFTVVILITQTVLVYIQD------SVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~~~~~~v~~~l~~------~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
|++.+++++.+..+|..+++.+++++.+ ..|||+.|++.++..++..++.+
T Consensus 130 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~ 186 (412)
T TIGR02332 130 RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988753 36999999987766554444333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=214.86 Aligned_cols=149 Identities=12% Similarity=0.116 Sum_probs=130.5
Q ss_pred HHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 008158 37 LANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCD 116 (575)
Q Consensus 37 ~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (575)
...+.+.+++++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+..++.++++.+++++
T Consensus 28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~----------- 95 (393)
T PRK09705 28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP----------- 95 (393)
T ss_pred cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc-----------
Confidence 44556678889999999999999999999999999999999995 999999999999999999999976
Q ss_pred CCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 008158 117 VAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 196 (575)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~ 196 (575)
++..++++|+++|+|.+...+....++.|++| ++ |+++++.+..+.+.|..+++.+++
T Consensus 96 ---------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~ 153 (393)
T PRK09705 96 ---------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITP 153 (393)
T ss_pred ---------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999999886 55 899999999999999999999999
Q ss_pred hccccc-cchhHhHHHHHHHHHHH
Q 008158 197 YIQDSV-SWVIGFGIPTVLMIGAI 219 (575)
Q Consensus 197 ~l~~~~-gw~~~f~~~~~~~~i~~ 219 (575)
++.+.. +||+.+.+.++..++.+
T Consensus 154 ~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 154 WLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHH
Confidence 888764 89988876544444333
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=222.24 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=128.8
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008158 38 ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDV 117 (575)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (575)
....+.+.+++|++.++.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++++.++++.
T Consensus 39 ~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------------ 105 (455)
T TIGR00892 39 TVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS------------ 105 (455)
T ss_pred hhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh------------
Confidence 3445667789999999999999999999999999999999995 999999999999999988888865
Q ss_pred CCCCCCccCCCcchhhHHHHH-HHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 008158 118 AKPPFGQCKSANSMQLGVLVM-GLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 196 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~ 196 (575)
+.+.+++ .|++.|++.+...+...+++.++++ ++ |+++.++.+.+.++|..++|.+++
T Consensus 106 --------------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~ 164 (455)
T TIGR00892 106 --------------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQ 164 (455)
T ss_pred --------------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHH
Confidence 4444544 5688999998776666778888885 45 999999999999999999999999
Q ss_pred hccccccchhHhHHHHHHHHHHHHHHHhc
Q 008158 197 YIQDSVSWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 197 ~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
++.+.+|||+.|++.+++.+++.+..++.
T Consensus 165 ~l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 165 YLFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 99998999999998887666555444443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=212.57 Aligned_cols=174 Identities=13% Similarity=0.209 Sum_probs=146.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~ 91 (575)
.+..|+....+....++.....|.....++ .+.+++|+++++.++..+.+.++..++.++.|+++||+ |||+++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~ 92 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLT-PMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFA 92 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHH
Confidence 344666655555544444445454444444 46679999999999999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 92 IAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
++..++.+.+.+++ +.+.+++.|+++|++.+...+...+++.|++|+++
T Consensus 93 ~~~~~~~~~~~~~~--------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~----- 141 (394)
T PRK10213 93 VLLTLSCLLVSFAN--------------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT----- 141 (394)
T ss_pred HHHHHHHHHHHHHC--------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH-----
Confidence 99999998888764 67889999999999999999999999999999877
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHH
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAI 219 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~ 219 (575)
|+++.++...+.++|..++|.+++++.+.+|||+.|++.+++.++..
T Consensus 142 -~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 142 -VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998999999998776555443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=215.17 Aligned_cols=176 Identities=15% Similarity=0.184 Sum_probs=152.3
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHH
Q 008158 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFA 90 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~ 90 (575)
.++.+|+......+.++.+.+..+.. ....+.+++++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLV-ALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 56778888888888888888876544 5555677889999999999999999999999999999999995 999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccc
Q 008158 91 SIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGV 170 (575)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 170 (575)
.++..++.+.+++++ +.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 84 ~~~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---- 133 (405)
T TIGR00891 84 IVLFSAGTLACGFAP--------------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL---- 133 (405)
T ss_pred HHHHHHHHHHHHHhc--------------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh----
Confidence 999999988888765 56778999999999999999999999999999877
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhcccccc--chhHhHHHHHHHHHHHH
Q 008158 171 KGINSFFNWYYTTFTVVILITQTVLVYIQDSVS--WVIGFGIPTVLMIGAII 220 (575)
Q Consensus 171 ~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~g--w~~~f~~~~~~~~i~~~ 220 (575)
|+++.++.+.+.++|..+++.+++.+.+..+ ||+.|++.++..++.++
T Consensus 134 --~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 183 (405)
T TIGR00891 134 --RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW 183 (405)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988877665 99999876655444433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=214.99 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=132.2
Q ss_pred HHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 008158 37 LANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCD 116 (575)
Q Consensus 37 ~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (575)
...+.+++.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+.+++++
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~----------- 89 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD----------- 89 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-----------
Confidence 45678889999999999999999999999999999999999995 999999999999999999988876
Q ss_pred CCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 008158 117 VAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 196 (575)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~ 196 (575)
+.+.+++.|++.|++.+...+.......|++| ++ |+++.++...+.++|..+++.+.+
T Consensus 90 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~ 147 (377)
T TIGR00890 90 ---------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLIT 147 (377)
T ss_pred ---------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHH
Confidence 67789999999999999888888888888886 34 899999999999999887776777
Q ss_pred hccccccchhHhHHHHHHHHHHHHHHH
Q 008158 197 YIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 197 ~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
.+.+..|||+.|++.++..++..+..+
T Consensus 148 ~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 148 SVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 776778999999987776655554443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=218.47 Aligned_cols=154 Identities=16% Similarity=0.079 Sum_probs=124.1
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008158 38 ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDV 117 (575)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (575)
....+|+.++ |+|.++.+++.+.+.++..++++++|+++||+ |||+++..+.++.+++.+.++++...
T Consensus 49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~---------- 116 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA---------- 116 (452)
T ss_pred HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc----------
Confidence 4455688887 99999999999999999999999999999995 99999999999999998888775310
Q ss_pred CCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHH-HHhhhhh
Q 008158 118 AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVIL-ITQTVLV 196 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-~~~~v~~ 196 (575)
..+...+++.|++.|++.+...+.....+.|++|+++ |++++++++.+.++|.. .+|.++.
T Consensus 117 ------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~ 178 (452)
T PRK11273 117 ------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLL 178 (452)
T ss_pred ------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 1146678899999999999988888888999999877 99999999999999864 4555433
Q ss_pred hccccccchhHhHHHHHHHHHHHHH
Q 008158 197 YIQDSVSWVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 197 ~l~~~~gw~~~f~~~~~~~~i~~~~ 221 (575)
.+....+||+.|++.++..++..++
T Consensus 179 ~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 179 GMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3333359999999877655544333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=217.64 Aligned_cols=167 Identities=13% Similarity=0.167 Sum_probs=145.2
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 92 (575)
+.+++.........+.+.+..+. ..+..+++++++|+|+.+.+++.+++.++..++.++.|+++||+ |||+++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFML-IFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 34455555555666666666543 45666778899999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 93 AAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
+..++++.+++++ +.+.++++|++.|+|.+...+....++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~--------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------ 139 (426)
T PRK12307 92 AYSVGTGLSGLAS--------------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------ 139 (426)
T ss_pred HHHHHHHHHHHHh--------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------
Confidence 9999999988876 67789999999999999999999999999999877
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHH
Q 008158 173 INSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTV 213 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~ 213 (575)
|+++.++++.+..+|.++++.+.+++.+..+||+.|++.+.
T Consensus 140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 99999999999999999999999998888999999987544
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=213.60 Aligned_cols=176 Identities=15% Similarity=0.096 Sum_probs=133.6
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhh-HHH-----HHHHHHHHHHHHhhhhHHHhhhcccchHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTS-AAN-----ILNIWGGVTNFAPLLGAFISDTYIGRFKTITF 89 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-~~~-----i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~ 89 (575)
++......+..+++.+.+. ++.+..+++.++++.+.++ .++ +.++..++..+++++.|+++||+ |||+++..
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 4455556677888877744 5677778999888654322 122 24666788899999999999995 99999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccc
Q 008158 90 ASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 169 (575)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 169 (575)
+.+++.+++++++++++..++ +......+++.|+++|+|.|+..+....+++|++|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~------------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~--- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATI------------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK--- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHH------------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC---
Confidence 999999999999987631110 00011248999999999999999999999999999877
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhhhhhhcc--------ccccchhHhHHHHHHHHH
Q 008158 170 VKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWVIGFGIPTVLMIG 217 (575)
Q Consensus 170 ~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~--------~~~gw~~~f~~~~~~~~i 217 (575)
|++..++...+..+|..+++.+...+. ..+|||+.|++.++..++
T Consensus 152 ---Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 152 ---RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 999999998888888888876554332 257999999987654443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-22 Score=216.68 Aligned_cols=189 Identities=14% Similarity=0.052 Sum_probs=141.2
Q ss_pred hcccccCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-----hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc
Q 008158 7 QKDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKE-----YHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI 81 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~ 81 (575)
|+.+-.+.+++.........+++......+-...+ .+.++ .+.+..+.+++.+.+.++..++.+++|+++||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~- 83 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL- 83 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 34334455556665566666666555433333333 34332 245566788999999999999999999999995
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccC
Q 008158 82 GRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 161 (575)
Q Consensus 82 Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~ 161 (575)
|||+++..+.++..++.++++++.+.. +..+...++++|+++|++.|+..+..+.+++|.
T Consensus 84 Grr~~~~~~~~~~~v~~~~~~~~~~~~--------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~ 143 (502)
T TIGR00887 84 GRKRVYGMELIIMIIATVASGLSPGSS--------------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEF 143 (502)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHccCcc--------------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 999999999999999998888753100 011357899999999999999999999999999
Q ss_pred CCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccc-----------------------cccchhHhHHHHHHHHHH
Q 008158 162 FDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-----------------------SVSWVIGFGIPTVLMIGA 218 (575)
Q Consensus 162 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~-----------------------~~gw~~~f~~~~~~~~i~ 218 (575)
+|+++ |+++.++.+....+|..+++.++.++.. .++||+.|.+.++..++.
T Consensus 144 ~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~ 217 (502)
T TIGR00887 144 ATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA 217 (502)
T ss_pred cChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH
Confidence 99988 9999999999999999999887664421 247999998777665555
Q ss_pred HHHHH
Q 008158 219 IILFL 223 (575)
Q Consensus 219 ~~~~~ 223 (575)
++..+
T Consensus 218 ~~~~~ 222 (502)
T TIGR00887 218 LYFRL 222 (502)
T ss_pred HHHHH
Confidence 44433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=217.40 Aligned_cols=156 Identities=17% Similarity=0.274 Sum_probs=130.9
Q ss_pred HHHHHHhhhhCCC--------hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008158 39 NFMVYLLKEYHMN--------QTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQL 110 (575)
Q Consensus 39 ~l~~yl~~~l~~~--------~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~ 110 (575)
...+.+..+++++ ..+.+++.+++.++..++.++.|+++||+ |||++++.+.+++.++.+++....+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~---- 123 (481)
T TIGR00879 49 GALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF---- 123 (481)
T ss_pred hhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 3344455566655 89999999999999999999999999995 9999999999999999888876542
Q ss_pred CCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHH
Q 008158 111 HPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILI 190 (575)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 190 (575)
..+.+.++++|+++|+|.+...+...++++|.+|+++ |++++++++.+.++|..+
T Consensus 124 -------------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~ 178 (481)
T TIGR00879 124 -------------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILV 178 (481)
T ss_pred -------------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHH
Confidence 1144578999999999999999999999999999887 999999999999999999
Q ss_pred Hhhhh---hhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 191 TQTVL---VYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 191 ~~~v~---~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
++.++ +...+..+||+.|++.++..++.++..++
T Consensus 179 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 99998 77767789999999866655555444443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-22 Score=210.83 Aligned_cols=176 Identities=15% Similarity=0.109 Sum_probs=140.6
Q ss_pred CcchhHHHHHHHHHHHHHhh--hhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008158 15 GWKAMPYILGNETFERLATI--GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (575)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~--~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 92 (575)
+.+..+..++..+++...++ .+.....+.+.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||++..+..
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~ 86 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVA 86 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 34444444444444443332 2223333456689999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 93 AAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
+..++.+....++ +.+.+++.|+++|++.+...+...+++.|.+|+++
T Consensus 87 ~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------ 134 (406)
T PRK15402 87 FFILTCLAILLAQ--------------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------ 134 (406)
T ss_pred HHHHHHHHHHHHc--------------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------
Confidence 9999888887765 56778899999999999888888999999999876
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 173 INSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
|.+..++.+....+|..++|.+++++.+..+||+.|++.+++.++..+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 135 AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLW 185 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 888889988888899999999999998888999999887766665555433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=207.45 Aligned_cols=357 Identities=11% Similarity=0.021 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008158 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTV 101 (575)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~ 101 (575)
++...++..++.......++.|.. +++.+..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.++.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 345566666665555556666655 6899999999999999999999999999999995 99999999999888888877
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHH
Q 008158 102 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 181 (575)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 181 (575)
.++...+ ..+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+
T Consensus 82 ~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 134 (365)
T TIGR00900 82 PFVALLG---------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQ 134 (365)
T ss_pred HHHHHcC---------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHH
Confidence 7654211 1156778999999999999999999999999999877 999999999
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcch-hHHHHHHHHHHhhcccCCCC
Q 008158 182 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFS-GIGQVLVAAYKKRRLTLPQG 260 (575)
Q Consensus 182 ~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 260 (575)
.+.++|..++|.+++++.+..|||+.|++.++..++..+..+..+++..++ +++++.. +..+
T Consensus 135 ~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------- 197 (365)
T TIGR00900 135 AVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALSNAVLR---------------- 197 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccchhHHH----------------
Confidence 999999999999999998889999999887766555544443322211000 0000000 0000
Q ss_pred CCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHH-HHHHHHH
Q 008158 261 QMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPI-WAAGIIS 339 (575)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 339 (575)
+..+ .+ ......+.++..... +......
T Consensus 198 ---------------------------~~~~-------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~ 226 (365)
T TIGR00900 198 ---------------------------DTRE-------------------GI-----KFVLKNPLLRTLLLLALLFNLVF 226 (365)
T ss_pred ---------------------------HHHh-------------------HH-----HHHHcCcHHHHHHHHHHHHHHHH
Confidence 0000 00 000000111111111 1111111
Q ss_pred HHhhccccceeeeecccccccCCCccc-cCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHH
Q 008158 340 LTSISQQGTFTVSQAMKMNRHLGPKFQ-IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFS 418 (575)
Q Consensus 340 ~~~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~ 418 (575)
........+.+ .....+ .+ ...+.+.....++.++...+..+ +.+|. ++++.+..+..+.
T Consensus 227 ~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~-------~~~~~~~~~~~~~ 287 (365)
T TIGR00900 227 APAIVALFPYV------QSKYLG--RGSTHYGWVLAAFGLGALLGALLLGL----LGRYF-------KRMALMTGAIFVI 287 (365)
T ss_pred HHHHHHHhHHH------HHHHhC--CchHHHHHHHHHHHHHHHHHHHHHHH----HHHHh-------chhHHHHHHHHHH
Confidence 11110111111 111111 00 01112222333333333333222 24443 2334455555555
Q ss_pred HHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHH
Q 008158 419 ILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLS 498 (575)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~ 498 (575)
+++....... .. +.+...+..++.+++.+...+....+..|.+|++.|+++.|+.++...++..++
T Consensus 288 ~~~~~~~~~~-------------~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 353 (365)
T TIGR00900 288 GLAILVVGLT-------------PP-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLG 353 (365)
T ss_pred HHHHHHHHhh-------------ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554432 11 355556677888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 008158 499 SLLITIVHGV 508 (575)
Q Consensus 499 ~~l~~~i~~~ 508 (575)
+.+.+.+.|.
T Consensus 354 ~~~~g~l~~~ 363 (365)
T TIGR00900 354 LILAGPLADH 363 (365)
T ss_pred HHHHHHHHHH
Confidence 9999988763
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=218.98 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=133.4
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 008158 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAA 94 (575)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~ 94 (575)
+++.+.......++.....+++ ..+.+++.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAA-APLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 3344444444555555544433 3445677889999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchh
Q 008158 95 ILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 174 (575)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 174 (575)
.++.++.+++. +...+++.|++.|++.+...+ ...+++|++|+++ |+
T Consensus 112 ~~~~~~~~~~~--------------------------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg 158 (476)
T PLN00028 112 APAVFCMSLVS--------------------------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VG 158 (476)
T ss_pred HHHHHHHHHhc--------------------------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------ee
Confidence 88888887765 556788899999999887544 4567899999877 99
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhcc----c-----cccchhHhHHHHHHHHHHHHHHHh
Q 008158 175 SFFNWYYTTFTVVILITQTVLVYIQ----D-----SVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 175 ~~~~~~~~~~~ig~~~~~~v~~~l~----~-----~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
+++++.+...++|..+++.+.+.+. + ..|||+.|++.+++.++..++.++
T Consensus 159 ~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 159 TANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999998877888877766655432 1 258999999877766555444433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=219.28 Aligned_cols=389 Identities=13% Similarity=0.115 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008158 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLT 100 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~ 100 (575)
.+....++..+. ..+.....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++.++.++
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 6 VLMLGTFMAVLD-STIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHHH
Confidence 333444444444 33555666778889999999999999999999999999999999995 9999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHH
Q 008158 101 VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWY 180 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 180 (575)
++.++ +...++++|+++|++.+...+...+++.|.+|+++ |+++++++
T Consensus 84 ~~~~~--------------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~ 131 (485)
T TIGR00711 84 CGVAP--------------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIW 131 (485)
T ss_pred HhCcC--------------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHH
Confidence 88765 56779999999999999999999999999999877 99999999
Q ss_pred HHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHH--------HHHHh
Q 008158 181 YTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLV--------AAYKK 252 (575)
Q Consensus 181 ~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 252 (575)
+.+..+|..++|.+++++.+.++||+.|++.++..++.+++.++..++.++++ .+........+. ....+
T Consensus 132 ~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~g~~l~~~~~~~~~~~~~~ 209 (485)
T TIGR00711 132 GLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAA--SENFDFLGLLLLSVGLGSLLYGLSE 209 (485)
T ss_pred HHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccc--cCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999877665555544443333211111 111111111000 00000
Q ss_pred hcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhh-h-----hhhhccCCCCCCCCCCCCccccchhhHHHhHhhh
Q 008158 253 RRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN-K-----AAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCL 326 (575)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (575)
.+ + .. +... .+.....- . .....+. ....+..+++ ..++++..
T Consensus 210 ~~----~---~~----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~ 258 (485)
T TIGR00711 210 GP----E---RG----WFDS-----------NEILILSITGLVAIIAFVVWEL----TDDNPLVDLR-----LFKYRNFT 258 (485)
T ss_pred CC----C---CC----CCCc-----------hHHHHHHHHHHHHHHHHHHHHH----cCCCCccCHH-----HHcCCChH
Confidence 00 0 00 0000 00000000 0 0000000 0000000100 00111111
Q ss_pred hhhHHHHHHHHHHHHhhccccceeeeecccccccCCCccc-cCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCC
Q 008158 327 IKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQ-IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGI 405 (575)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~ 405 (575)
...+..+.....++......+. +.....+ ++ ...+.......++.++..++..+ +.+|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~g--~s~~~~g~~~~~~~~~~~~~~~~~g~----l~~r~------- 318 (485)
T TIGR00711 259 IGCVYMSLLGLGLYGSFYLLPL-------YLQQVLG--YTALQAGLHILPVGLAPMLSSPIAGR----MGDKI------- 318 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHH----HHhhc-------
Confidence 1111111111111111111111 1111111 10 01122222333444444443222 24554
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHH
Q 008158 406 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS 485 (575)
Q Consensus 406 ~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g 485 (575)
++++.+.+|..+..++...+..... ...+.+..+...++.|+|.+...++......+..|++.+++++|
T Consensus 319 ~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 387 (485)
T TIGR00711 319 DPRKLVTIGLILYAVGFYWRAFTFT-----------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSS 387 (485)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHH
Confidence 3345567777777777666542110 12345555666788899999988888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 008158 486 LLFCSFGFASYLSSLLITIVHG 507 (575)
Q Consensus 486 ~~~~~~~lg~~l~~~l~~~i~~ 507 (575)
+.++.+.+|+.+++.+.+.+.+
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-22 Score=212.08 Aligned_cols=169 Identities=16% Similarity=0.184 Sum_probs=128.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhC---CChhhHHHHHHHH---HHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008158 24 GNETFERLATIGLLANFMVYLLKEYH---MNQTSAANILNIW---GGVTNFAPLLGAFISDTYIGRFKTITFASIAAILG 97 (575)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~---~~~~~~~~i~~~~---~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~ 97 (575)
...+++.+..+ ...++.+++.++++ .+..+.+.+..++ .++..++++++|+++||+ ||||++..+.+++.++
T Consensus 29 ~~~~~~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 29 SGNLVEWFDFY-VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 45667766644 47778889999884 5555544444444 444559999999999995 9999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhh
Q 008158 98 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 177 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 177 (575)
++.++++++..+ .+......+++.|+++|+|.|+..+...++++|++|+++ |+++.
T Consensus 107 ~~~~~~~~~~~~------------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~ 162 (432)
T PRK10406 107 SLVIACLPGYET------------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYA 162 (432)
T ss_pred HHHHhhcCCchh------------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHH
Confidence 999988653111 001134568999999999999999999999999999877 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcc--------ccccchhHhHHHHHHHHHH
Q 008158 178 NWYYTTFTVVILITQTVLVYIQ--------DSVSWVIGFGIPTVLMIGA 218 (575)
Q Consensus 178 ~~~~~~~~ig~~~~~~v~~~l~--------~~~gw~~~f~~~~~~~~i~ 218 (575)
++.+.+.+.|.++++.+...+. +.+|||+.|++.++..++.
T Consensus 163 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 163 SFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 9988888888888876655443 2579999999877655443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=206.09 Aligned_cols=176 Identities=12% Similarity=0.157 Sum_probs=144.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 92 (575)
.+++|..+...+..++.....+ ....+.+.+.+++|+|.++.+++.+.+.++..++.+++|+++||+ |||+++..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~ 80 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVI-VTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFA 80 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 4556666666666666655544 344445557789999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 93 AAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
+..++.++.++++ +.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 81 ~~~i~~~l~~~~~--------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------ 128 (394)
T PRK03699 81 LMILAVAGLMFSH--------------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------ 128 (394)
T ss_pred HHHHHHHHHHHcc--------------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------
Confidence 9999988888764 66778999999999999999999999999998766
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhcc-ccccchhHhHHHHHHHHHHHHHH
Q 008158 173 INSFFNWYYTTFTVVILITQTVLVYIQ-DSVSWVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~~~~~~v~~~l~-~~~gw~~~f~~~~~~~~i~~~~~ 222 (575)
|+...+..+....+|..++|.+.+++. +..|||+.|.+.++..++..++.
T Consensus 129 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 129 RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 999999888888899999998888765 45799999987766555444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=210.23 Aligned_cols=166 Identities=18% Similarity=0.267 Sum_probs=143.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 008158 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTL 103 (575)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~ 103 (575)
...++..+........++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+...+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhhh
Confidence 445555566555555666589999999999999999999999999999999999995 9999999999999999666665
Q ss_pred HhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHH
Q 008158 104 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 183 (575)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (575)
++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+.+
T Consensus 82 ~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~ 129 (352)
T PF07690_consen 82 AS--------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAG 129 (352)
T ss_dssp HC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHH
T ss_pred hh--------------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccch
Confidence 43 45589999999999999999999999999999977 99999999999
Q ss_pred HHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHH
Q 008158 184 FTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 184 ~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~ 222 (575)
.++|..++|.+++++.+..+||+.|++.++..++..++.
T Consensus 130 ~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 130 FSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 999999999999999988999999999888777776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=207.48 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=134.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHH-HHHHHHHHHHHHH
Q 008158 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITF-ASIAAILGMLTVT 102 (575)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~-~~~l~~~~~~~~~ 102 (575)
...++..++.....+.++.|+++++|.|..+.+++.+.+.+...+..++.|+++||+ ||||.++. +..+..++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence 456777777777888999999999999999999999999999999999999999995 99887654 4555556666666
Q ss_pred HHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh--hhHHH
Q 008158 103 LTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS--FFNWY 180 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~ 180 (575)
+++ +.+.+++.|++.|.+.+...|...++..|..|+++ |++ ..++.
T Consensus 83 ~~~--------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~ 130 (375)
T TIGR00899 83 WNR--------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVM 130 (375)
T ss_pred hcc--------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHH
Confidence 654 56667888988888878788887788888776544 443 36777
Q ss_pred HHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 181 YTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 181 ~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
+...++|..++|.+++++.+..|||+.|++.+++.++..++.++
T Consensus 131 ~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 131 RAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999998899999999887765555554443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-23 Score=211.53 Aligned_cols=182 Identities=12% Similarity=0.148 Sum_probs=162.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~ 91 (575)
.+..++....+.+.+.+++..-|.+.. ...-+++.+|.++++.|++...+.+.+.+..|+.|+++||| .||.++.+|.
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~ 105 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGI 105 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHH
Confidence 344556677777899999998887665 55667888999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 92 IAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
.++.++++.++++. +++++.+.|.+.|+|.+.+.|.++++++|.||+++
T Consensus 106 ~iW~~Av~~~~fs~--------------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~----- 154 (493)
T KOG1330|consen 106 FIWTLAVFASGFSN--------------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK----- 154 (493)
T ss_pred HHHHHHHHHHHHHH--------------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh-----
Confidence 99999999999986 78899999999999999999999999999999988
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHHHHhccc
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGKK 227 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~ 227 (575)
|++.++++|++.++|..+|.++++++....+ |||+|+..+++.++..++.++..+
T Consensus 155 -Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 155 -RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred -hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999987766 999999998887777766655444
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=204.95 Aligned_cols=175 Identities=13% Similarity=0.077 Sum_probs=145.2
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
.+.+..+.+..++..++... .....+++.+++|.|+++.+++.+++.++..++.++.|+++||+ |||+++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDM-YLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence 34444444454555444333 33344567889999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
++.+....++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++
T Consensus 82 ~~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 129 (385)
T TIGR00710 82 LSSLGLALSN--------------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSR 129 (385)
T ss_pred HHHHHHHHHc--------------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHH
Confidence 9988888765 56778999999999999999999999999999877 999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
.+++.+...++|..++|.+++++.+..+||+.|++.++..++..+..+.
T Consensus 130 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 130 IYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988889999998877665555544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-22 Score=214.73 Aligned_cols=148 Identities=11% Similarity=0.097 Sum_probs=129.7
Q ss_pred hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccC
Q 008158 47 EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCK 126 (575)
Q Consensus 47 ~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (575)
++|++..+.|.+.+.+.++..++.+++|+++||+ |||+++..+.++..++.+...++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 7899999999999999999999999999999995 9999999999998888877765431
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccc-cch
Q 008158 127 SANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWV 205 (575)
Q Consensus 127 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~-gw~ 205 (575)
.+...+++.|+++|++.+...+....++.|++|+++ |+++.++.+.+.++|..+++.+++++.+.. |||
T Consensus 129 ----~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~ 198 (465)
T TIGR00894 129 ----GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWP 198 (465)
T ss_pred ----cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 135668999999999999999999999999999887 999999999999999999999999998874 999
Q ss_pred hHhHHHHHHHHHHHHHHHhc
Q 008158 206 IGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 206 ~~f~~~~~~~~i~~~~~~~~ 225 (575)
+.|++.++..++..++++..
T Consensus 199 ~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 199 MIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred eehhhhhHHHHHHHHHHHHH
Confidence 99998877666555544443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-21 Score=204.24 Aligned_cols=172 Identities=9% Similarity=0.107 Sum_probs=140.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 92 (575)
-.-||.+....+.+++..++.+....++++++ +++|++.++.+++.+.+.++..++.++.|+++||+ ||||++..+.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~ 86 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL 86 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 45567777777788888788777777888888 57899999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 93 AAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
+..++++.+...... ..+...+++.|++.|+|.+...+...+.+.|.+|+++
T Consensus 87 ~~~~~~~~~~~~~~~----------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------ 138 (402)
T TIGR00897 87 LWCVGHAAFIVFGLG----------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------ 138 (402)
T ss_pred HHHHHHHHHHHHhcc----------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------
Confidence 998887665432100 0145667889999999988877777888889998877
Q ss_pred hhhhhHHHHHHHHHHH-HHHhhhhhhccccccchhHhHHHHHH
Q 008158 173 INSFFNWYYTTFTVVI-LITQTVLVYIQDSVSWVIGFGIPTVL 214 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~-~~~~~v~~~l~~~~gw~~~f~~~~~~ 214 (575)
|+++.++++.+.++|. .++|.+++++.+..||+..++.....
T Consensus 139 ~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 139 LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 9999999999999996 58999999988888977666544433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=213.84 Aligned_cols=168 Identities=15% Similarity=0.221 Sum_probs=144.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 92 (575)
+.+|+....+....++..+..+ ....+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFV-LITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 4455655566666666666544 455566778889999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 93 AAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
+..++.+.++++. +.+.+++.|++.|++.++..+....++.|.+|+++
T Consensus 94 ~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------ 141 (496)
T PRK03893 94 LFSVGTLACGFAP--------------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------ 141 (496)
T ss_pred HHHHHHHHHHHHh--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------
Confidence 9999998888865 67789999999999999999999999999999877
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHH
Q 008158 173 INSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVL 214 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~ 214 (575)
|++.+++++.+.++|..++|.+.+++.+.++||+.|++.++.
T Consensus 142 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 142 RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999989999999875443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=207.28 Aligned_cols=176 Identities=10% Similarity=0.100 Sum_probs=145.2
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHH
Q 008158 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFA 90 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~ 90 (575)
.++..|+.....+...+...... .......+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~ 88 (398)
T TIGR00895 11 LSRYQWRAIILSFLIMLMDGYDL-AAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWS 88 (398)
T ss_pred CcchHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHH
Confidence 34444555555555555554443 3455666778889999999999999999999999999999999995 999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccc
Q 008158 91 SIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGV 170 (575)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 170 (575)
.++..++.++..++. +.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 89 ~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 138 (398)
T TIGR00895 89 ILLFSVFTLLCALAT--------------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF---- 138 (398)
T ss_pred HHHHHHHHHHHHHcc--------------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh----
Confidence 999888888877654 56678899999999999999999999999999877
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHH
Q 008158 171 KGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 220 (575)
Q Consensus 171 ~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~ 220 (575)
|++++++.+.+.++|..+++.+++++.+..||++.|++.++...+..+
T Consensus 139 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 186 (398)
T TIGR00895 139 --RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLL 186 (398)
T ss_pred --hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHH
Confidence 999999999999999999999999999889999999887544443333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=205.12 Aligned_cols=169 Identities=14% Similarity=0.161 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
.+.+....+......+...+ +.+.+++++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMG-VLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIGN 82 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHh-ChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHHH
Confidence 33344444444444444444 44567789999999999999999999999999999999995 99999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
+++++++ +.+.+++.|++.|++.+...+....++.|.+|+++ |++.++
T Consensus 83 ~l~~~~~--------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 130 (382)
T PRK10091 83 AMFTLSS--------------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVA 130 (382)
T ss_pred HHHHHhC--------------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHH
Confidence 9988875 67889999999999999988888888899988766 899999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHH
Q 008158 179 WYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~ 221 (575)
.+..+..+|..++|.+++++.+..+||+.|++.++..++..+.
T Consensus 131 ~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 131 GMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988899999999877765544443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=207.35 Aligned_cols=178 Identities=11% Similarity=0.103 Sum_probs=131.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhh--CCChhhHHHHH-----HHHHHHHHHHhhhhHHHhhhcccchH
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEY--HMNQTSAANIL-----NIWGGVTNFAPLLGAFISDTYIGRFK 85 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--~~~~~~~~~i~-----~~~~~~~~~~~~~~G~laD~~~Grr~ 85 (575)
+.++|.........++|...........+.++.+++ +.++. .+++. ++..++..++.++.|+++||+ |||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~ 95 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKR 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHH
Confidence 344566666666777777776544444455666665 66665 45443 233455668888899999995 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCC
Q 008158 86 TITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 165 (575)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 165 (575)
++..+.+++.+++++++++++.++. .......+++.|+++|++.|+..+....++.|.+|++
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~ 157 (438)
T PRK09952 96 MLMLTVWMMGIATALIGLLPSFSTI------------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN 157 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHH------------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC
Confidence 9999999999999999987531110 0011235888999999999999999999999999987
Q ss_pred CcccccchhhhhHHHHHHHHHHHHHHhhhhhhcc--------ccccchhHhHHHHHHHH
Q 008158 166 TDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ--------DSVSWVIGFGIPTVLMI 216 (575)
Q Consensus 166 ~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~--------~~~gw~~~f~~~~~~~~ 216 (575)
+ |+...+..+.+..+|..++..+..++. +.+|||+.|++.++..+
T Consensus 158 ~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 158 K------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred C------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 7 999999988888899888877666553 25799999998776543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=199.01 Aligned_cols=345 Identities=16% Similarity=0.219 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008158 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTV 101 (575)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~ 101 (575)
+....++.....+.....++.|. +++|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHHH
Confidence 34556666677666666666665 56799999999999999999999999999999995 99999999999999999888
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHH
Q 008158 102 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 181 (575)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 181 (575)
...+ +.+.+++.|++.|++.+...+...++..|.+|+++ |++.+++.+
T Consensus 82 ~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 129 (352)
T cd06174 82 AFAS--------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFS 129 (352)
T ss_pred HHhc--------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHH
Confidence 8764 67789999999999999999999999999999877 999999999
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccCCCCC
Q 008158 182 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQ 261 (575)
Q Consensus 182 ~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (575)
...++|..++|.+++++.+..+|++.|++.++..++..+...+..+
T Consensus 130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 175 (352)
T cd06174 130 AGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR---------------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------
Confidence 9999999999999999998889999999877766655554433210
Q ss_pred CCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHH-HHHHHHHH
Q 008158 262 MDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPI-WAAGIISL 340 (575)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 340 (575)
.++..... +.......
T Consensus 176 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 192 (352)
T cd06174 176 ---------------------------------------------------------------LLLLLALAFFLLSFGYY 192 (352)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHhHHH
Confidence 00000000 00000111
Q ss_pred HhhccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHH
Q 008158 341 TSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSIL 420 (575)
Q Consensus 341 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~ 420 (575)
......+...... . ... ....+.......++..+..++..+ +.+|.++|+ ..+.++..+..+
T Consensus 193 ~~~~~~~~~~~~~-~----~~~---~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~------~~~~~~~~~~~i 254 (352)
T cd06174 193 GLLTYLPLYLQEV-L----GLS---AAEAGLLLSLFGLGGILGALLGGL----LSDRLGRRR------LLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHh-c----CCC---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhh------HHHHHHHHHHHH
Confidence 1111110110000 0 000 011122333444555555554333 367765542 056777777777
Q ss_pred HHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008158 421 SMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSL 500 (575)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~ 500 (575)
+.+..... .+.+...+..++.+++.+...+....++.|..|++.|++.+|+.++...++..+++.
T Consensus 255 ~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 319 (352)
T cd06174 255 GLLLLALA---------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPL 319 (352)
T ss_pred HHHHHHHh---------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666543 235566777888999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 008158 501 LITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFL 546 (575)
Q Consensus 501 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~ 546 (575)
+.+.+.+.. ++...+.+.+++.+++.+..+
T Consensus 320 i~g~l~~~~----------------~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 320 LAGLLLDTG----------------GYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHhccc----------------CcchHHHHHHHHHHHHHHHhe
Confidence 999887632 335677777777777665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-21 Score=204.61 Aligned_cols=149 Identities=13% Similarity=0.121 Sum_probs=131.6
Q ss_pred HHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 008158 42 VYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPP 121 (575)
Q Consensus 42 ~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (575)
+.+.+++|.+..+.++..+++.++..++.++.|+++||+ |||++++.+..++.++++.+++++
T Consensus 40 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~---------------- 102 (413)
T PRK15403 40 INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT---------------- 102 (413)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC----------------
Confidence 347789999999999999999999999999999999995 999999999999999999888865
Q ss_pred CCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhcccc
Q 008158 122 FGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS 201 (575)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~ 201 (575)
+.+.++++|+++|++.+...+....++.|.+|+++ |++.+++++...++|..+||.+++++.+.
T Consensus 103 ----------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~ 166 (413)
T PRK15403 103 ----------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHF 166 (413)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67789999999999988767777788899999877 89999999999999999999999999888
Q ss_pred ccchhHhHHHHHHHHHHHHHHH
Q 008158 202 VSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 202 ~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
.|||+.|++.++..+++.+..+
T Consensus 167 ~gw~~~f~~~~~~~~i~~~~~~ 188 (413)
T PRK15403 167 VHWKVLFAIIAVMGLIAFVGLL 188 (413)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999987776665554433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=203.38 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=134.2
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
|.++.+++..++..++...+.+.++.|++ ++|.|..+.|++.+.+.++..+++++.|+++||+ |||+++..+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45677778888888876666677777666 6899999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
+...+++++ +.+.+++.|+++|++.++..+...+.+.|..++++ |++.
T Consensus 84 ~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~ 131 (381)
T PRK03633 84 GCAGLGLMV--------------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRL 131 (381)
T ss_pred HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence 998888765 67788999999999999988887777888888766 9999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccccccch
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQDSVSWV 205 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~~~gw~ 205 (575)
+++++.+.++|..+||.+++++.+...|.
T Consensus 132 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 132 LAAYMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 99999999999999999999987754333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=202.48 Aligned_cols=174 Identities=14% Similarity=0.161 Sum_probs=144.2
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 92 (575)
++.+|....+....++..+... +.....+++.+++|+|+.+.+++.+.+.++..++.++.|+++||+ |||+++..+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~-~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~ 81 (394)
T PRK11652 4 QRNVNLLFMLVLLVAVGQMAQT-IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMS 81 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHH
Confidence 3466677766666666665544 333445567789999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 93 AAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
+..++.+....++ +.+.+++.|++.|++.+...+....+..|.+++++
T Consensus 82 ~~~~~~~~~~~~~--------------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (394)
T PRK11652 82 IFILGTLVALFAH--------------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------ 129 (394)
T ss_pred HHHHHHHHHHHHc--------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------
Confidence 9999888887754 56778999999999998887877888888888766
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHH
Q 008158 173 INSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 220 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~ 220 (575)
|+++.+++..+..+|..++|.+++++.+..|||+.|++.++..++..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998888999999987665544433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=212.75 Aligned_cols=379 Identities=14% Similarity=0.153 Sum_probs=241.1
Q ss_pred hhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcc
Q 008158 46 KEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQC 125 (575)
Q Consensus 46 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (575)
.++++|.++.+++.+.+..|..++++++|+++||+ |-|+++..+.++.++++++.+++..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~------------------- 125 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS------------------- 125 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 36889999999999999999999999999999995 9999999999999999999999863
Q ss_pred CCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhcccc-ccc
Q 008158 126 KSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS-VSW 204 (575)
Q Consensus 126 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~-~gw 204 (575)
.+.+.+++.|+++|++.|...|+...+.+.+.|++| |+++.++.+.+.++|.+++..++|++.+. .||
T Consensus 126 -----~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW 194 (466)
T KOG2532|consen 126 -----IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGW 194 (466)
T ss_pred -----hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCC
Confidence 133468999999999999999999999999999999 99999999999999999999999999988 999
Q ss_pred hhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCc
Q 008158 205 VIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLT 284 (575)
Q Consensus 205 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (575)
+.+|++.++..++..+++++...+.+.+++.-+. ++.....+.+..+..
T Consensus 195 ~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~-----~El~~I~~~k~~~~~-------------------------- 243 (466)
T KOG2532|consen 195 PSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISE-----KELKYIEKGKSEAHV-------------------------- 243 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCH-----HHHHHHHhccccccc--------------------------
Confidence 9999999888877777776654433333222111 111111111110000
Q ss_pred chhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhhccccceeeeecccccccCCCc
Q 008158 285 HQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPK 364 (575)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 364 (575)
...+..|| +.+++..++++.-...+...........+.+.+++..+ +
T Consensus 244 --------------------~~~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL--~ 290 (466)
T KOG2532|consen 244 --------------------KKKPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL--G 290 (466)
T ss_pred --------------------CCCCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh--C
Confidence 00023344 22333333333222222222222222233334444444 3
Q ss_pred ccc-CccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHH--HHHHHHHHHHHHHHHHhHhhhhcccccCCC
Q 008158 365 FQI-PPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRI--GIGMIFSILSMIVAGLVERGRRASAHLHPM 441 (575)
Q Consensus 365 ~~~-~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i--~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (575)
+.+ ..+.+..+..+...+...+.+. +.||+.+|.......+++ .++....++.++.+++..
T Consensus 291 f~v~~~G~~salP~l~~~~~k~~~g~----lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~------------ 354 (466)
T KOG2532|consen 291 FDVRETGFLSALPFLAMAIVKFVAGQ----LSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS------------ 354 (466)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHH----HHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC------------
Confidence 333 2344445555554444443333 367665542112223333 355555555555555442
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCC
Q 008158 442 SQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTND 521 (575)
Q Consensus 442 ~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~ 521 (575)
..+.+..+. .+..+.+................-++..+..+|+.++...++.+++|.+.+.+... +...+|
T Consensus 355 -~~~~~~a~~-~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~---~t~~eW---- 425 (466)
T KOG2532|consen 355 -DEHRLLAVI-LLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTD---NTREEW---- 425 (466)
T ss_pred -CCcchHHHH-HHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCC---CCHHHH----
Confidence 112211111 12222222222222222222221467799999999999999999999999887631 123356
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008158 522 IDAGRLDYFYFLIAGLGGLNIVYFLYCAR 550 (575)
Q Consensus 522 ~~~~~~~~~f~~~a~i~~v~~i~~~~~~~ 550 (575)
..+|.+.+++.+++.++|.++..
T Consensus 426 ------~~VF~i~a~i~~~~~i~f~~f~s 448 (466)
T KOG2532|consen 426 ------RIVFLIAAGILIVGNIIFLFFGS 448 (466)
T ss_pred ------HHHHHHHHHHHHHhchheeEeec
Confidence 67899999999998888877753
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-21 Score=207.63 Aligned_cols=149 Identities=12% Similarity=0.151 Sum_probs=130.2
Q ss_pred HHHHhhhhCCC---hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008158 41 MVYLLKEYHMN---QTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDV 117 (575)
Q Consensus 41 ~~yl~~~l~~~---~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (575)
.+.+.+++|++ ..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.+..+++.
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~------------ 178 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP------------ 178 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc------------
Confidence 34577899998 89999999999999999999999999995 999999999999999988888765
Q ss_pred CCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 008158 118 AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVY 197 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~ 197 (575)
+.+.+++.|++.|++.++..+....++.|.+|+++ |+.+.+++..+..+|.++++.++.+
T Consensus 179 --------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 179 --------------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred --------------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999877 9999999999999999999988776
Q ss_pred ccccccchhHhHHHHHHHHHHHHHHHhc
Q 008158 198 IQDSVSWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 198 l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
+.+ ||+.|++.++..++..+..++.
T Consensus 239 ~~~---wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 239 IPD---WRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred hhH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 654 9999998777666555555443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=198.17 Aligned_cols=165 Identities=16% Similarity=0.203 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008158 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILG 97 (575)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~ 97 (575)
..+.++...++..++.......++. +.+++|.++.+.+++.+.+.+...++.+++|+++||+ ||||+++.+..++.++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence 3445556666666654433344443 4678999999999999999999999999999999995 9999999999999988
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhh
Q 008158 98 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 177 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 177 (575)
++.+..+. + .++.|+++|++.+...|+..+++.|++|+++ |+++.
T Consensus 82 ~~~~~~~~--------------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~ 126 (393)
T PRK11195 82 CLLMLFGI--------------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKAN 126 (393)
T ss_pred HHHHHHHH--------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence 88776643 2 2778999999999999999999999999877 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHH
Q 008158 178 NWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 220 (575)
Q Consensus 178 ~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~ 220 (575)
++.....++|..+||.++|++.+. .|+..+++.+.+.+++.+
T Consensus 127 ~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 127 GWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAAL 168 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 477777665544443433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=205.19 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=135.2
Q ss_pred HHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 008158 37 LANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCD 116 (575)
Q Consensus 37 ~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (575)
.....+++.+++|+|..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.++.+++.
T Consensus 14 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~----------- 81 (379)
T TIGR00881 14 FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST----------- 81 (379)
T ss_pred hhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh-----------
Confidence 45556788899999999999999999999999999999999995 999999999999999999988865
Q ss_pred CCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHh-hhh
Q 008158 117 VAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQ-TVL 195 (575)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~-~v~ 195 (575)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+.+.++|..++| .++
T Consensus 82 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 140 (379)
T TIGR00881 82 ---------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVL 140 (379)
T ss_pred ---------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHH
Confidence 66779999999999999999999999999999877 99999999999999999999 577
Q ss_pred hhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 196 VYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 196 ~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
+.+.+..+||+.|++.+++.++..++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 141 FGIAELYSWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 7777778999999887765555444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=197.18 Aligned_cols=177 Identities=12% Similarity=0.048 Sum_probs=155.2
Q ss_pred chhHHHHHHHHHHHHHhhhhHH---HHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLA---NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~---~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l 93 (575)
|.-+.++...++.-.++|-+.- ...+++.++.++|.+|.|.+.+.+.+.+.++-.+.|.++||. +.|+.+-.++++
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLil 103 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHH
Confidence 4445666677777788887654 456899999999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 94 AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
..+..+++++++ ++..+.+...+.|..+|.-.|.....++.++|++| |
T Consensus 104 sai~nil~Gfs~--------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------R 151 (448)
T COG2271 104 SAIVNILFGFSP--------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------R 151 (448)
T ss_pred HHHHHHHHhhhh--------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------c
Confidence 999999999976 67778888899999999999999999999999998 9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhh--hhccccccchhHhHHHHHHHHHHHHHHHhcc
Q 008158 174 NSFFNWYYTTFTVVILITQTVL--VYIQDSVSWVIGFGIPTVLMIGAIILFLVGK 226 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~--~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~ 226 (575)
|+..++.+.+-|+|+.+.|.+. +++..+.+||..|++++++.++..+..++..
T Consensus 152 G~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 152 GTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred CceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 8998888999999999887665555444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=197.75 Aligned_cols=150 Identities=14% Similarity=0.149 Sum_probs=130.1
Q ss_pred HHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 008158 42 VYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPP 121 (575)
Q Consensus 42 ~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (575)
+.+++++|.++++.+++.+++.++..++.+++|+++||+ |||+++..+..+..++.+.+.++.
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---------------- 92 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE---------------- 92 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc----------------
Confidence 347789999999999999999999999999999999995 999999999999988888887764
Q ss_pred CCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhcccc
Q 008158 122 FGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS 201 (575)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~ 201 (575)
+.+.+++.|++.|++.+...+...+++.|.+|+++ +++.++......++|..++|.+++++.+.
T Consensus 93 ----------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 156 (401)
T PRK11043 93 ----------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNH 156 (401)
T ss_pred ----------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778999999999988877878888999998766 88888888888899999999999999988
Q ss_pred ccchhHhHHHHHHHHHHHHHHHh
Q 008158 202 VSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 202 ~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
.|||+.|++.++..++..+..+.
T Consensus 157 ~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 157 FGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred CChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877666555544433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=201.63 Aligned_cols=391 Identities=10% Similarity=0.013 Sum_probs=220.2
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
+..+.+....++...+++...++++.|+++++|+|..+.|.+.+++.++..+++++.|+++||+ |||++++++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4555555567777777777899999999999999999999999999999999999999999995 999999887666554
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
+..........+ . .......+..+.++..+...........++.++.. ++++..
T Consensus 89 ~~~~~~~~~~~~---------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~ 142 (420)
T PRK09528 89 LFGPFFIYVFAP---------------------L-LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFE 142 (420)
T ss_pred HHHHHHHHHHHH---------------------H-HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhcccc
Confidence 433221110000 0 00001222223333333333332333333332111 225667
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhccc
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLT 256 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (575)
++..+...++|..++|.+++++.+ .+|+..|++.++..++.+++.+..+++.+++ ++.+ +++
T Consensus 143 ~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~-- 204 (420)
T PRK09528 143 YGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-AKVA--------------NAL-- 204 (420)
T ss_pred chhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-hhhc--------------cch--
Confidence 788888889999999999999876 5899999987776665555554433321110 0000 000
Q ss_pred CCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHH
Q 008158 257 LPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAG 336 (575)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (575)
.++ +. +....+... ..++ +.++.........
T Consensus 205 ~~~---~~---------------------~~~~~~~~~------------------------~l~~-~~~~~l~l~~~~~ 235 (420)
T PRK09528 205 GAN---AS---------------------AVSLKDALA------------------------LLKL-PKFWFLVLYVIGV 235 (420)
T ss_pred hcc---cc---------------------cccHHHHHH------------------------HccC-CCeEeehHHHHHH
Confidence 000 00 000000000 0000 1111111111111
Q ss_pred HHHHHhhc-cccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHH
Q 008158 337 IISLTSIS-QQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGM 415 (575)
Q Consensus 337 ~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~ 415 (575)
...+.... +.+.+.... ..+...+ . ...+.+..+..+...+..++. .++.||+++| +.+.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~--~~~~~~~--~-~~~g~~~~~~~~~~~~~~~~~----g~l~dr~g~~-------~~~~~~~ 299 (420)
T PRK09528 236 ACFYDVFDQQFPNFFASF--FATPEQG--T-RVFGYLNSFQVFLEALIMFFA----PFIINRIGAK-------NALLLAG 299 (420)
T ss_pred HHHHHHHHHHHHHHHHHH--HhccCcc--h-HHHHHHHHHHHHHHHHHHHHH----HHHHHHhCcc-------hhhHHHH
Confidence 11111111 111111110 0011110 0 001222233333333433333 3347777655 3366666
Q ss_pred HHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHH-HHHHHHHH
Q 008158 416 IFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL-LFCSFGFA 494 (575)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~lg 494 (575)
++..++....+.. .+.+.++...++.+++.....+....++.+..|++.+++..+. +++...+|
T Consensus 300 ~l~~~~~~l~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg 364 (420)
T PRK09528 300 TIMAVRIIGSGFA---------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLG 364 (420)
T ss_pred HHHHHHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHH
Confidence 6666666555533 2445556667778888888888888999999999999988766 66778899
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 008158 495 SYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYC 548 (575)
Q Consensus 495 ~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~ 548 (575)
..+++.+.+++.|.. +++..|...+++.++..++.+..
T Consensus 365 ~~ig~~~~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 365 AVFLSTLAGNLYDSI----------------GFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred HHHHHHHHHHHHHhh----------------CchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998754 34567777777776665555544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=206.40 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=127.9
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008158 38 ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDV 117 (575)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (575)
....+++++ +|+|+++.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.+..++..+..
T Consensus 47 ~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 115 (438)
T TIGR00712 47 ALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT--------- 115 (438)
T ss_pred HhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc---------
Confidence 344567775 599999999999999999999999999999995 999999999999888888776542110
Q ss_pred CCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 008158 118 AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVY 197 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~ 197 (575)
.+...+.+.|++.|++.+...+.....+.|++|+++ |++++++++.+.++|..+++.+.++
T Consensus 116 -------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 116 -------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred -------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHH
Confidence 145667888999999999998988999999999887 9999999999999999999887765
Q ss_pred c-cccccchhHhHHHHHHHHHHHHHHH
Q 008158 198 I-QDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 198 l-~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
. .+..+||+.|++.++..++..+..+
T Consensus 177 ~~~~~~~w~~~f~~~~~~~~i~~~~~~ 203 (438)
T TIGR00712 177 GMAWFNDWHAALYFPAICAIIVALFAF 203 (438)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4 3446899999987776655444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-20 Score=195.61 Aligned_cols=176 Identities=14% Similarity=0.112 Sum_probs=125.8
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHH-HHHHHhhhhHHHhhhcccchHHHH-HHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGG-VTNFAPLLGAFISDTYIGRFKTIT-FASIA 93 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~-~~~~l 93 (575)
.......++..++.+++.....+.++.|+.+++|.|.++.|++.+...+ +..+.++++|+ +||+ ||||.++ .+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~ 91 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL 91 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence 3444555566888888888888999999999999999999999876655 55556666666 9995 9998754 55555
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHH-HHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 94 AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGL-GLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
..++.++.+++. +.+.+++.+ ++.+.+ +...|....+..|..++++ +.
T Consensus 92 ~~~~~~~~~~~~--------------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~ 140 (393)
T PRK15011 92 GVLACTLFAWNR--------------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG----RE 140 (393)
T ss_pred HHHHHHHHHHhh--------------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc----ch
Confidence 556666666654 445554444 444444 4566777777777665433 11
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 173 INSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
.+...++.+.+.++|..+||.+++++.+.+|||..|++.++..++..+..+.
T Consensus 141 ~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 141 AVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 2344578888999999999999999998899999999877665555544443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-20 Score=197.48 Aligned_cols=173 Identities=12% Similarity=0.110 Sum_probs=128.4
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHH-HHHHHH-----HHHHhhhhHHHhhhcccchHHHH
Q 008158 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANIL-NIWGGV-----TNFAPLLGAFISDTYIGRFKTIT 88 (575)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~-~~~~~~-----~~~~~~~~G~laD~~~Grr~~~~ 88 (575)
+++.....+...+++.+... ...+..+++.++++.++.+.+.+. +....+ ..+++++.|+++||+ |||++++
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~ 90 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFF-LFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLI 90 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHH
Confidence 34455555556666666543 456677788999999887765443 222222 235788999999995 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcc
Q 008158 89 FASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE 168 (575)
Q Consensus 89 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 168 (575)
.+.+++.++++.++++++.+.+ +......++++|+++|++.+...+....+++|++|+++
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-- 150 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYATI------------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR-- 150 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHHH------------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc--
Confidence 9999999999999986531100 00001247899999999999999989999999999887
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhhhhhhc--------cccccchhHhHHHHH
Q 008158 169 GVKGINSFFNWYYTTFTVVILITQTVLVYI--------QDSVSWVIGFGIPTV 213 (575)
Q Consensus 169 ~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l--------~~~~gw~~~f~~~~~ 213 (575)
|++..+++..+.++|..+++.+++.+ .+.+|||+.|++.++
T Consensus 151 ----rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 151 ----KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 99999999988888888888777665 246899999987543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=190.07 Aligned_cols=361 Identities=11% Similarity=0.023 Sum_probs=221.1
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHH----HHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTI----TFASIAA 94 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~----~~~~~l~ 94 (575)
...+....++...++-...++++.|+ +++|+|.++.|++.+++.+...+++++.|+++||+ ||++.. ..+..++
T Consensus 6 ~~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~ 83 (382)
T TIGR00902 6 FRWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIF 83 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence 33344455555555444556677777 47899999999999999999999999999999995 985433 2222222
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchh
Q 008158 95 ILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 174 (575)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 174 (575)
.+ ..+..++ +.+.+++.|.+++.+.+...|...++..|. +++ |+
T Consensus 84 ~~--~~~~~~~--------------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~ 127 (382)
T TIGR00902 84 AA--AFSAGAH--------------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FG 127 (382)
T ss_pred HH--HHHHhhh--------------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cC
Confidence 22 1222222 577888999999999888888877776543 233 78
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhc
Q 008158 175 SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRR 254 (575)
Q Consensus 175 ~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (575)
+.++......++|..++|.+++++.+.+|||..|++......+.++. +..+++. +++++...
T Consensus 128 ~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~-------------- 189 (382)
T TIGR00902 128 LDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTI---PPKDAIPE-------------- 189 (382)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCC---CCCccccc--------------
Confidence 89999999999999999999999999999999998765443322222 2222210 11100000
Q ss_pred ccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHH
Q 008158 255 LTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWA 334 (575)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (575)
.+ ... .+ ... +..++ ++++... .
T Consensus 190 ---~~---~~~------------------~~--~~~---------------------------~~l~~-~~~~~~l---~ 212 (382)
T TIGR00902 190 ---DE---SQG------------------DS--AFI---------------------------ALLKN-PMNLRFL---A 212 (382)
T ss_pred ---cc---ccc------------------ch--hHH---------------------------HHHcC-hHHHHHH---H
Confidence 00 000 00 000 00011 1111111 1
Q ss_pred HHHHHHHhhccccceeeeecccccccCCCccccCcccccc---chhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHH
Q 008158 335 AGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGV---ISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRI 411 (575)
Q Consensus 335 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i 411 (575)
...+.+.......++.. .+.+. .+ .+...... +..+..++.. ...+|+.+| .+.++.+
T Consensus 213 ~~~l~~~~~~~~~~~~~---~~l~~-~g----~s~~~~g~l~~~~~~~~i~~~--------~~~~~l~~r---~g~~~~l 273 (382)
T TIGR00902 213 AVCLIQGAHAAYYGFSA---IYWQA-AG----ISASATGLLWGIGVLAEIIIF--------AFSNKLFQN---CSARDLL 273 (382)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHH-CC----CCHhHHHHHHHHHHHHHHHHH--------HHhHHHHhh---CCHHHHH
Confidence 11111222222212111 11111 22 22222222 2233333322 235555544 2566778
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHH-HH
Q 008158 412 GIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF-CS 490 (575)
Q Consensus 412 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~-~~ 490 (575)
.++.+...+....+... .+.+.+++..++.++..+...+....++.+. |++.+++++++++ +.
T Consensus 274 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~ 337 (382)
T TIGR00902 274 LISAIACVGRWAIIGAI---------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALA 337 (382)
T ss_pred HHHHHHHHHHHHHHHhH---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHH
Confidence 88888888887766543 3556666677999999999999999999988 9999999999987 56
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHH
Q 008158 491 FGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVY 544 (575)
Q Consensus 491 ~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~ 544 (575)
..+|..+++.+.|++.|.. +. ..|+..+++++++.+.
T Consensus 338 ~g~g~~~g~~~~G~l~~~~----------------g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 338 MGGLIAIFTAFAGFIYPTL----------------GA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHhc----------------cH-HHHHHHHHHHHHHHHH
Confidence 7799999999999998753 22 5577777777766433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-20 Score=193.62 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=132.1
Q ss_pred HHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008158 39 NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVA 118 (575)
Q Consensus 39 ~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (575)
...+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.+.+..+.
T Consensus 24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~~~------------- 89 (392)
T PRK10473 24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSLAE------------- 89 (392)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHHhC-------------
Confidence 445566778999999999999999999999999999999995 999999999999999988887754
Q ss_pred CCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhc
Q 008158 119 KPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI 198 (575)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l 198 (575)
+...+++.|+++|++.+...+...+++.|.+|+++ |+++.++.+...++|..++|.+++++
T Consensus 90 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 90 -------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred -------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999988889999999999877 99999999999999999999999988
Q ss_pred cccccchhHhHHHHHHHHHHHHHH
Q 008158 199 QDSVSWVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 199 ~~~~gw~~~f~~~~~~~~i~~~~~ 222 (575)
.+..+|++.|++.+++.++..++.
T Consensus 151 ~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 151 MLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HhCcChHHHHHHHHHHHHHHHHHH
Confidence 888899999988776655554443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-20 Score=194.01 Aligned_cols=151 Identities=14% Similarity=0.142 Sum_probs=132.8
Q ss_pred HHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008158 39 NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVA 118 (575)
Q Consensus 39 ~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (575)
...+.+.+++|+|..+.+++.+++.++..++.+++|+++||+ |||+++..+.++..++.+.+.++.
T Consensus 12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~------------- 77 (377)
T PRK11102 12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ------------- 77 (377)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc-------------
Confidence 333444568999999999999999999999999999999995 999999999999999998888765
Q ss_pred CCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhc
Q 008158 119 KPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI 198 (575)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l 198 (575)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+....+|..++|.+++++
T Consensus 78 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l 138 (377)
T PRK11102 78 -------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWL 138 (377)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999877 99999999999999999999999999
Q ss_pred cccccchhHhHHHHHHHHHHHHHH
Q 008158 199 QDSVSWVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 199 ~~~~gw~~~f~~~~~~~~i~~~~~ 222 (575)
.+..+||+.|++.++..++..+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 139 LVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHH
Confidence 988899999988776655554443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=204.89 Aligned_cols=363 Identities=36% Similarity=0.592 Sum_probs=226.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCC
Q 008158 84 FKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 163 (575)
Q Consensus 84 r~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~ 163 (575)
.|+++++.++..+|.+++.++...+.+ ++..+.+.++++..+.++|.|+++|+..++++|+++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~-----------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~ 63 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL-----------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYD 63 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-----------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSS
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh-----------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhc
Confidence 478899999999999998887643322 112245679999999999999999999999999999
Q ss_pred CCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEee-CCCCCcchh-
Q 008158 164 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLV-EPEGSIFSG- 241 (575)
Q Consensus 164 ~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~- 241 (575)
+++ +.+|.++++++|++.|+|+++++.+.+++.+.+||.+.|.++++..+++++.++..++++... ++.+++..+
T Consensus 64 ~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~ 140 (372)
T PF00854_consen 64 EDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNF 140 (372)
T ss_dssp TTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--
T ss_pred ccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchh
Confidence 763 367999999999999999999999999999999999999999999999999999998887766 566666555
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCcccc-chhhHH
Q 008158 242 IGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRL-CSIQQV 320 (575)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 320 (575)
....+....+++....+. +.. . .+..... .............+...+.. .....|.. .+.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~---~~~-~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 204 (372)
T PF00854_consen 141 IKLVLVAAFKKRKLAVPK---GSS-W-LDWALFQ--YSERSIFGIIVFIRAAVIFF---------PEIFFWALFCQVQRV 204 (372)
T ss_dssp SHHHHHHHHHHHCCCH-H---HHH-H-HHHHHHH--HCCCCCCCCCCHHHHHHHHC---------CCHHHHTTTSSTTTH
T ss_pred HHHHHHHHHHHhhccccc---chH-H-HHHhhhh--hhhhhhhhhhhhccchhhhh---------hhhhhcccCCcccee
Confidence 333334444443332211 000 0 0000000 00000000000000000000 00011111 233455
Q ss_pred HhHhhhhhhHHHHHHHHHHHHhhccccceeeeecccccccCCCc-cccCccccccchhHhhHhhhhcccchhHHHhhhhh
Q 008158 321 EEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPK-FQIPPGTVGVISMITIGLWLPFYDTVLVPALRKIT 399 (575)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~ 399 (575)
++.|.+.+.++.+.....++....+..+....+...++...+ + ++++++.+++++.+.++++.|++|++.+|+.++
T Consensus 205 ~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-- 281 (372)
T PF00854_consen 205 EELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-- 281 (372)
T ss_dssp HHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT--
T ss_pred eeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh--
Confidence 667777777777766667777777766666666666666666 5 889999999999999999999999998888882
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchh
Q 008158 400 KHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHM 479 (575)
Q Consensus 400 ~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~ 479 (575)
++ ..+...++.+|++.+.++++.....+..+......++ ..+.++.++.+++..++|.+..+...+...|.+|++.
T Consensus 282 ~~--~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~ 357 (372)
T PF00854_consen 282 GI--QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG--KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRA 357 (372)
T ss_dssp --------HHHHHHH-HHHHHHHHTTTHHHH---HH----T--T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-
T ss_pred cc--cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC--CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhh
Confidence 22 2478889999999999999998887764443333332 2333566699999999999999998886666665555
Q ss_pred HHHHHHHHHH
Q 008158 480 KSIANSLLFC 489 (575)
Q Consensus 480 rg~~~g~~~~ 489 (575)
.+..+|+++.
T Consensus 358 p~~m~~~~~~ 367 (372)
T PF00854_consen 358 PSSMMGIWFA 367 (372)
T ss_dssp SSSSTHHHHH
T ss_pred hHHHHHHHHH
Confidence 5555555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=192.56 Aligned_cols=135 Identities=13% Similarity=0.054 Sum_probs=113.4
Q ss_pred hhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008158 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPP 113 (575)
Q Consensus 34 ~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 113 (575)
......+.+.+++++|.|+.+.+++.+.+.++..+++++.|++.||+ |||+++..+..++.++.+++..+..
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~~~~------- 113 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAE------- 113 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 34455566677999999999999999999999999999999999995 9999999999999999987642211
Q ss_pred CCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhh
Q 008158 114 KCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQT 193 (575)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~ 193 (575)
..+...++++|+++|+|.|...+..++++.|..|+++ |...++.......+|..+++.
T Consensus 114 ----------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~ 171 (438)
T PRK10133 114 ----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_pred ----------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHH
Confidence 1167789999999999999999999999998765544 666788888888999999998
Q ss_pred hhhhc
Q 008158 194 VLVYI 198 (575)
Q Consensus 194 v~~~l 198 (575)
+++.+
T Consensus 172 ~g~~l 176 (438)
T PRK10133 172 FGQSL 176 (438)
T ss_pred HHHHH
Confidence 87654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-19 Score=191.63 Aligned_cols=386 Identities=13% Similarity=0.055 Sum_probs=247.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 92 (575)
+.+-|.+..+.+.+.+.+++...-..-++ .+..++.-|+...+++.....+...+..+++|.++||+ .|||+++.+-+
T Consensus 6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~-wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~ 83 (524)
T PF05977_consen 6 PLRNRNFRRLWIAQLISNLGDWMQTVALA-WLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQL 83 (524)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHH
Confidence 33445666666777777777553333333 44446677899999999999999999999999999995 99999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 93 AAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
+..+..+.+++..... ..+.+.+++..++.|++.+...|+.++++.|..|+++
T Consensus 84 ~~~~~~~~L~~l~~~~---------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------ 136 (524)
T PF05977_consen 84 LRALVALLLAVLAFFG---------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------ 136 (524)
T ss_pred HHHHHHHHHHHHHHhC---------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------
Confidence 8776666655433211 2267788888999999999999999999999999887
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHh
Q 008158 173 INSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKK 252 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (575)
...+.++.....|+.-.+||.++|.+....|-.+.|.+.++..++.+++....+++. ++++.+.+...+.+...
T Consensus 137 L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G--- 210 (524)
T PF05977_consen 137 LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP---PPSSLPRERFFSALREG--- 210 (524)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHH---
Confidence 999999999999999999999999998888888999988877666555444333221 11111110000000000
Q ss_pred hcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHH
Q 008158 253 RRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPI 332 (575)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (575)
+++.. ..+.+...+.
T Consensus 211 -----------------------------------------------------------~ryv~-----~~~~l~~~l~- 225 (524)
T PF05977_consen 211 -----------------------------------------------------------LRYVR-----SSPPLRSVLL- 225 (524)
T ss_pred -----------------------------------------------------------HHHHh-----cchHHHHHHH-
Confidence 00000 0011111110
Q ss_pred HHHHHHHHHhhccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHH
Q 008158 333 WAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIG 412 (575)
Q Consensus 333 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ 412 (575)
....+.......... .+......++ +-....+.+....+++.++.+.+ ..++.+| .+..+.+.
T Consensus 226 --~~~~~~l~~~a~~aL---lPl~a~~~l~-~~a~~yGll~a~~gvGai~Gal~--------~~~l~~~---~~~~~lv~ 288 (524)
T PF05977_consen 226 --RSFLFNLFASAVWAL---LPLFARDVLG-GGASGYGLLLAAFGVGAILGALL--------LPRLRRR---LSSRRLVL 288 (524)
T ss_pred --HHHHHHHhhhHHHHh---hhHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHH--------HHHhhcc---cCcchhhH
Confidence 001111110000011 1111111221 00011122333344444444333 3333333 23445566
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHH
Q 008158 413 IGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFG 492 (575)
Q Consensus 413 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~ 492 (575)
.+.++.+++++.+++. .+.+...+..++.|.+.....+..++.+.+..|+++||+..+++++...
T Consensus 289 ~~~~~~a~~~~~lal~---------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~ 353 (524)
T PF05977_consen 289 LASLLFALALLLLALS---------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF 353 (524)
T ss_pred HHHHHHHHHHHHHhcc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH
Confidence 7777777776666543 3556667778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 008158 493 FASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFL 546 (575)
Q Consensus 493 lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~ 546 (575)
.+..+|..+.|.+.+.. +....+.+.++..+++.++.+
T Consensus 354 g~~~lGsll~G~la~~~----------------g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 354 GGMPLGSLLWGFLADHF----------------GVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHh----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988754 445566665555555544444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=6e-19 Score=191.94 Aligned_cols=180 Identities=11% Similarity=0.083 Sum_probs=140.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc-----cchHH
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI-----GRFKT 86 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-----Grr~~ 86 (575)
....+|....+++..+...+..+.....++.+++ +.|.+.++.+... ..... .++.+++|+++|| + ||||.
T Consensus 7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~ 82 (491)
T PRK11010 7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDR-YTPPFLGRRRG 82 (491)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHc-ccccCCCCchH
Confidence 4445666777777777777777767777777766 4588888888862 22333 2688999999999 7 99885
Q ss_pred -HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCC
Q 008158 87 -ITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 165 (575)
Q Consensus 87 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 165 (575)
++.+.++..++...+++... ..+.+.+.+.+++.+++.+...+...++..|++|++
T Consensus 83 ~ll~~~i~~~~~~~~~a~~~~-----------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 83 WLLATQLLLLVAIAAMGFLEP-----------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 65777777777777766431 125777888999999999999999999999999987
Q ss_pred CcccccchhhhhHHHHHHHHHHHHHHhhhhhhccc-cccchhHhHHHHHHHHHHHHHHHh
Q 008158 166 TDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-SVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 166 ~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~-~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
+ |+++.++...+..+|..+++.+++++.+ ..|||..|++.++..++..+..++
T Consensus 140 ~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 140 E------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred h------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 7 9999999999999999999999999988 579999999887766655544443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-19 Score=188.31 Aligned_cols=386 Identities=12% Similarity=0.038 Sum_probs=222.7
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
.+......++...++....++++.|+++++|++..+.+++.+.+.+...+++++.|+++||+ |||+.++.+.....++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~ 82 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVLF 82 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 44455567777777777888999999999999999999999999999999999999999995 99999988776665544
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
.........+.+ .......+.+.+++.|++.+...+....+..|..++ ++..++
T Consensus 83 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g 136 (396)
T TIGR00882 83 APFFIYVFGPLL------------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYG 136 (396)
T ss_pred HHHHHHHhhhHH------------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccc
Confidence 332211000000 000223356678888888888888877766554221 345667
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccCC
Q 008158 179 WYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLP 258 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (575)
......++|..+||.+++.+.+ .+|+..|++.+++.++..++.+..+++. ++++... +. .+.+
T Consensus 137 ~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----------~~-~~~~ 199 (396)
T TIGR00882 137 KARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVA-----------NA-LGAN 199 (396)
T ss_pred hhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhh-----------cc-cccc
Confidence 7777889999999999998865 6999999987766655544443322211 1100000 00 0000
Q ss_pred CCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHHH
Q 008158 259 QGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGII 338 (575)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (575)
. .. .+..+.. +..++ |.++..+........
T Consensus 200 ~---~~----------------------~~~~~~~------------------------~~l~~-~~~~~~~l~~~~~~~ 229 (396)
T TIGR00882 200 A---SA----------------------FSLKLAL------------------------ELFRQ-RKFWMFVLYVVGVAC 229 (396)
T ss_pred c---CC----------------------CCHHHHH------------------------HHHcC-CcHHHHHHHHHHHHH
Confidence 0 00 0000000 00001 111111111111111
Q ss_pred HHHhh-ccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHH
Q 008158 339 SLTSI-SQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIF 417 (575)
Q Consensus 339 ~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~ 417 (575)
.+... .+.+.+..... .+...+ . ...+....+..+...+.... ..++.||.++| +.+.++.++
T Consensus 230 ~~~~~~~~~~~y~~~~~--~~~~~~--~-~~~g~~~~~~~i~~~~~~~~----~g~l~~r~g~~-------~~l~~~~~l 293 (396)
T TIGR00882 230 VYDVFDQQFANFFTSFF--ATPQQG--T-RVFGYVTTMGELLNALIMFC----APLIINRIGAK-------NALLIAGTI 293 (396)
T ss_pred HHHHHHHHHHHHHHHhc--cccccc--h-HHHHHHHHHHHHHHHHHHHH----HHHHHHHhccc-------hhHHHHHHH
Confidence 11111 11111111000 000010 0 00111222222233333232 23346666544 346666666
Q ss_pred HHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHH-HHHHHHHHHH
Q 008158 418 SILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL-LFCSFGFASY 496 (575)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~~~~~lg~~ 496 (575)
.+++....... .+.+.+++..++.+++.........++..+..|++.++++.+. .+....+|+.
T Consensus 294 ~~l~~~~~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~ 358 (396)
T TIGR00882 294 MSVRIIGSSFA---------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMI 358 (396)
T ss_pred HHHHHHHHHhc---------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHH
Confidence 66655544322 2444556667778888777777777888888999999887776 6688999999
Q ss_pred HHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 008158 497 LSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYF 545 (575)
Q Consensus 497 l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~ 545 (575)
+++.+.+++.|.. ++...|.+.+++.++..+..
T Consensus 359 ~~~~l~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 359 FLSTLAGNMYDSI----------------GFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHhHHHHHHhc----------------ccHHHHHHHHHHHHHHHHHH
Confidence 9999999998753 45677777777766654443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-19 Score=188.21 Aligned_cols=179 Identities=13% Similarity=0.044 Sum_probs=130.5
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhh-hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLK-EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
|.........+.....++ +...+.+.+.+ ++|+|.+|.+++.+++.+...++.++.|++.||+ |.|+++.++.++..
T Consensus 34 r~l~~s~~~f~~~F~~w~-~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWM-LFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 434443333333333333 44555566654 8999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
+.++..+++...+ ..++..+++.|++.|++ ++..+.....+++++|+++ |++
T Consensus 112 i~~~~~~~a~~~~---------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~ 163 (462)
T PRK15034 112 IPCVWLGIAVQNP---------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGS 163 (462)
T ss_pred HHHHHHHHHHccc---------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHH
Confidence 9999888752100 11678899999999998 6688889999999999887 999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcc-----c-------------cccchhHhHHHHHHHHHHHHHHHhc
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQ-----D-------------SVSWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~-----~-------------~~gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
++++.....++|..+++.+...+. . ..+||.++++..+..++..++.++.
T Consensus 164 A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 164 ALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999997666777766555443321 1 3347777766666555555555543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-19 Score=211.92 Aligned_cols=156 Identities=12% Similarity=0.074 Sum_probs=124.7
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCCh--hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQ--TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l 93 (575)
.+.+...+...++..+...+....+..++...++.+. ...+++.+++.++..++++++|+++||+ |||++++.+.++
T Consensus 8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~ 86 (1146)
T PRK08633 8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF 86 (1146)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence 3445555556666555555555666666766666654 4468889999999999999999999995 999999998887
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 94 AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
.+++.++..++.. ..+.+.+++.|++.|++.+...+...+++.|++|+++ |
T Consensus 87 ~~~~~~~~~~~~~-----------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r 137 (1146)
T PRK08633 87 EVGLTLLIVLAYY-----------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------L 137 (1146)
T ss_pred HHHHHHHHHHHHH-----------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------c
Confidence 7666655544321 1157789999999999999999999999999999877 9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhcccc
Q 008158 174 NSFFNWYYTTFTVVILITQTVLVYIQDS 201 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~~~l~~~ 201 (575)
+++++++..+.++|.++|+.+++++.+.
T Consensus 138 ~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 138 SRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998765
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-19 Score=189.45 Aligned_cols=351 Identities=10% Similarity=0.084 Sum_probs=211.0
Q ss_pred HHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchH-HHHHHHHHHHHHHHHHHHHhh
Q 008158 31 LATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFK-TITFASIAAILGMLTVTLTAW 106 (575)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~-~~~~~~~l~~~~~~~~~~~~~ 106 (575)
+....+.++++.|+.+++|+++.++|.+.++..+...+..|+.|+++||. +|||| .++.+..+..++.+.+....+
T Consensus 13 ~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~ 92 (437)
T TIGR00792 13 FIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD 92 (437)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC
Confidence 33444567899999999999999999999999999999999999999983 48755 566777777777777765432
Q ss_pred cCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHH
Q 008158 107 LPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 186 (575)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 186 (575)
.++ ......+++.+++.+++.+.......++..|..++.+ +|++..++...+.++
T Consensus 93 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~ 147 (437)
T TIGR00792 93 FSA--------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATL 147 (437)
T ss_pred CCc--------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHH
Confidence 111 1135667778888899988888888888888875422 399999998888888
Q ss_pred HHHHHhhhhhhcc-------ccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccCCC
Q 008158 187 VILITQTVLVYIQ-------DSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQ 259 (575)
Q Consensus 187 g~~~~~~v~~~l~-------~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (575)
|..+++.+.+.+. +..+|++.+++.+++.++..++.+...++.+++.+.++ ..
T Consensus 148 g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~--------------------~~ 207 (437)
T TIGR00792 148 GGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI--------------------EK 207 (437)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc--------------------cc
Confidence 8877766554443 34689999887777665555444333222110000000 00
Q ss_pred CCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHHHH
Q 008158 260 GQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIIS 339 (575)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (575)
+. +..+.. .+..++ |.+...+.........
T Consensus 208 ---~~-----------------------~~~~~~-----------------------~~l~~~-~~~~~~~~~~~~~~~~ 237 (437)
T TIGR00792 208 ---KL-----------------------SLKQIF-----------------------KALFKN-DQLLILCLAYLFYNLA 237 (437)
T ss_pred ---CC-----------------------CHHHHH-----------------------HHHhCC-HHHHHHHHHHHHHHHH
Confidence 00 000000 000001 1111111111111111
Q ss_pred HHhhccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHH
Q 008158 340 LTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSI 419 (575)
Q Consensus 340 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~ 419 (575)
+.........+.... .+ . ....+.+..+..++.++..++..+ +.+|+++| +.+.++..+..
T Consensus 238 ~~~~~~~~~~~~~~~------~~-~-~~~~~~~~~~~~i~~ii~~~~~~~----l~~r~g~~-------~~~~~~~~~~~ 298 (437)
T TIGR00792 238 FNIKNGVQVYYFTYV------LG-D-PELFSYMGSIAIVAGLIGVLLFPR----LVKKFGRK-------ILFAGGILLMV 298 (437)
T ss_pred HHHHcchhheeEeee------cC-C-hHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCcH-------HHHHHHHHHHH
Confidence 111111111211111 11 0 000112223334444444444333 36665433 45666776666
Q ss_pred HHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCC-------chhHHHHHHHHHHHHH
Q 008158 420 LSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-------DHMKSIANSLLFCSFG 492 (575)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~rg~~~g~~~~~~~ 492 (575)
++.+..... +.+.+..++..++.+++.+...+..++.+.|..| ++.+|.+.|+.++...
T Consensus 299 ~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 364 (437)
T TIGR00792 299 LGYLIFFFA--------------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRK 364 (437)
T ss_pred HHHHHHHHc--------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHH
Confidence 666555432 1233444556677788888888888888888765 5678999999999999
Q ss_pred HHHHHHHHHHHHhhhhc
Q 008158 493 FASYLSSLLITIVHGVT 509 (575)
Q Consensus 493 lg~~l~~~l~~~i~~~~ 509 (575)
++..+++.+.+.+.+..
T Consensus 365 ~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 365 LGQALAGFLVGLILGII 381 (437)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999998765
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=185.77 Aligned_cols=390 Identities=13% Similarity=0.065 Sum_probs=216.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccc-hHHHHHHHHHHHHHHHHHH
Q 008158 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGR-FKTITFASIAAILGMLTVT 102 (575)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr-r~~~~~~~~l~~~~~~~~~ 102 (575)
...++...++-...+++++|+++++|++..+.|++.+++.++..+++++.|+++||+ || |+++.++.++..+++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHH
Confidence 344444455444568999999999999999999999999999999999999999995 65 7788877777777777766
Q ss_pred HHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCC--CcccccchhhhhHHH
Q 008158 103 LTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT--TDEGVKGINSFFNWY 180 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~ 180 (575)
+.+ +.+.+++.|++.|++.+...+...+...+...+. +..+...|.+.++
T Consensus 88 ~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G-- 139 (418)
T TIGR00889 88 QVT--------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG-- 139 (418)
T ss_pred Hhc--------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh--
Confidence 654 4566778888888887766665554432221100 0000012455554
Q ss_pred HHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccCCCC
Q 008158 181 YTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQG 260 (575)
Q Consensus 181 ~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (575)
.+|..++|.+++.+.....|+ +|++.++..++..+..+.. ++.++ +++++..+. ++. ..
T Consensus 140 ----~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~~-~e~~~--~~~~~~~~~--------~~~----~~- 198 (418)
T TIGR00889 140 ----TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALTL-PDIPV--AKSTAKMSI--------KVM----LG- 198 (418)
T ss_pred ----hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhcC-CCCCC--CccccccCH--------HHH----hh-
Confidence 478888888888874433354 4555555444444333222 21110 000000000 000 00
Q ss_pred CCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHH-HHHHHHH
Q 008158 261 QMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPI-WAAGIIS 339 (575)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 339 (575)
.+.. +..++ ++++..+.. ++.....
T Consensus 199 -----------------------------~~~~------------------------~~~k~-~~~~~~~~~~~~~~~~~ 224 (418)
T TIGR00889 199 -----------------------------LDAF------------------------ILFKN-KRMAIFFFFSMLLGAPL 224 (418)
T ss_pred -----------------------------hhHH------------------------HHhcC-CCeeeHHHHHHHHHhHH
Confidence 0000 00000 111111111 1110101
Q ss_pred HHhhccccceeeeecccccccCCCcccc-CccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHH
Q 008158 340 LTSISQQGTFTVSQAMKMNRHLGPKFQI-PPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFS 418 (575)
Q Consensus 340 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~ 418 (575)
.......+... . ....+.....++.. ..+....+..+..++...+ ...+.||+++ ++.+.++.++.
T Consensus 225 ~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~----~g~l~dr~g~-------r~~l~~~~~~~ 291 (418)
T TIGR00889 225 QITNIFGNGFL-H-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILT----IPFFLKRFGI-------KKVMLLSLVAW 291 (418)
T ss_pred HHHHHhHHHHH-H-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHhCc-------HHHHHHHHHHH
Confidence 01110000010 0 00000000000000 0112222333333333333 2333666543 35577777777
Q ss_pred HHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHH-HHHHHHHHH
Q 008158 419 ILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLF-CSFGFASYL 497 (575)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~-~~~~lg~~l 497 (575)
.++...+..... ...+++.+++..++.+++++...+....++.+.+|++.|++++|+.+ ....+|..+
T Consensus 292 ~v~~~l~~~~~~-----------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i 360 (418)
T TIGR00889 292 ALRFGFFAYGDP-----------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL 360 (418)
T ss_pred HHHHHHHHHcCc-----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 777655544210 01123445566788899999989999999999999999999999997 567899999
Q ss_pred HHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008158 498 SSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 551 (575)
Q Consensus 498 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~ 551 (575)
++.+.+++.+..+.... + +++..|.+.+++.+++.+.++++.++
T Consensus 361 Gp~l~G~l~~~~g~~~~--~--------~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 361 GYILSGVMVEKMFAYGT--F--------DWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred HHHHHHHHHHHhccccC--C--------chHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999998875421110 1 35677888888888877777776653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=187.95 Aligned_cols=158 Identities=13% Similarity=0.076 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008158 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGML 99 (575)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~ 99 (575)
+......++....++...+.++.++++++|+|..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 3344455555555565666666689999999999999999999999999999999999995 999999999999999998
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHH
Q 008158 100 TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 179 (575)
.++++.. +.+.+++.|+++|++.+.. +...++++|++|+++ |++..++
T Consensus 83 ~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~ 130 (366)
T TIGR00886 83 WAGLAVQ-------------------------SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGL 130 (366)
T ss_pred HHHHHhh-------------------------hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHH
Confidence 8887641 4566889999999996654 557889999999877 9999999
Q ss_pred HHHHHHHHHHHHhhhhhhccc----------cccchhHhHH
Q 008158 180 YYTTFTVVILITQTVLVYIQD----------SVSWVIGFGI 210 (575)
Q Consensus 180 ~~~~~~ig~~~~~~v~~~l~~----------~~gw~~~f~~ 210 (575)
+....++|..+++.+++.+.. ..+||+.|++
T Consensus 131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 998888888888877765543 3489999943
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-19 Score=211.31 Aligned_cols=149 Identities=12% Similarity=0.026 Sum_probs=113.0
Q ss_pred HHhhhhCCCh-hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH--HHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008158 43 YLLKEYHMNQ-TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI--AAILGMLTVTLTAWLPQLHPPKCDVAK 119 (575)
Q Consensus 43 yl~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (575)
.+.+..+.+. ...++..+++.+...++.+++|+++||+ |||+++..... +.........+...
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~~------------- 106 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHLN------------- 106 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 3343444433 3467778889999999999999999995 99997643222 22222222222211
Q ss_pred CCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhcc
Q 008158 120 PPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ 199 (575)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~ 199 (575)
+.+.++++|+++|++.+...|+..+++.|++|+++ |++++++.+++.++|.++||.++|++.
T Consensus 107 ------------s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~ 168 (1140)
T PRK06814 107 ------------SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLAT 168 (1140)
T ss_pred ------------hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999877 999999999999999999999999999
Q ss_pred ccccchhHhHHHHHHHHHHHHHHH
Q 008158 200 DSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 200 ~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
+..+|++.|+..+++.++++++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1140)
T PRK06814 169 ISGNFVILVALLMGIAVLGWLASL 192 (1140)
T ss_pred hccccHHHHHHHHHHHHHHHHHHh
Confidence 989999998555554444444433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-18 Score=181.07 Aligned_cols=156 Identities=11% Similarity=-0.021 Sum_probs=115.7
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccch----HHHHHHHHHHHHHHHHH
Q 008158 26 ETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRF----KTITFASIAAILGMLTV 101 (575)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr----~~~~~~~~l~~~~~~~~ 101 (575)
.++-..+...+.+.++.|++ ++|.|.++.|++.+.+.+...++.++.|+++||+ ||| +.+.++..+. + ...
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~-~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--A-VAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--H-HHH
Confidence 33334444445667778885 6899999999999999999999999999999995 984 3332222111 1 111
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHH
Q 008158 102 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 181 (575)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 181 (575)
.... .+.+.+++.|++.|++.+...|...++..|+. ++ |++.++...
T Consensus 88 ~~~~-------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~~~ 134 (382)
T PRK11128 88 WFGA-------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGKVR 134 (382)
T ss_pred HHhc-------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcchHH
Confidence 1111 16777889999999999999998777777652 22 777888888
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHH
Q 008158 182 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAI 219 (575)
Q Consensus 182 ~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~ 219 (575)
...++|..+||.+++++.+.+|||..|++.++..++..
T Consensus 135 ~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 135 LWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 88899999999999999998999999987765544443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=176.82 Aligned_cols=388 Identities=13% Similarity=0.075 Sum_probs=248.6
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHH
Q 008158 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFA 90 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~ 90 (575)
.++.++|..+............ ..+...+.+++++++|+|+.|.+++.++..+...+..++-|++.|| ||.|++...+
T Consensus 8 ~k~~~~~~L~~S~~af~v~F~V-W~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s 85 (417)
T COG2223 8 GKRIARRNLWLSTLAFDVGFMV-WTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILS 85 (417)
T ss_pred cccchhHHHHHHHHHHHHHHHH-HHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHH
Confidence 3455666666555443333333 3467788889999999999999999999999999999999999999 5999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccc
Q 008158 91 SIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGV 170 (575)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 170 (575)
.++..+-.+..+++.+.| +.+.+++.+++.|++. +.++...++++.+||+++
T Consensus 86 ~~l~~IP~~~~~~a~~~~-----------------------~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~---- 137 (417)
T COG2223 86 MLLLLIPCLGLAFAVTYP-----------------------STWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEK---- 137 (417)
T ss_pred HHHHHHHHHHHHHHccCC-----------------------chHHHHHHHHHHhccc-ceehcccccccccCChhh----
Confidence 999999999999987533 3478999999999984 456777889999999988
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhcccccc---chhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHH
Q 008158 171 KGINSFFNWYYTTFTVVILITQTVLVYIQDSVS---WVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLV 247 (575)
Q Consensus 171 ~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~g---w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (575)
+|.+.+++. ..|+|..+...++.++....+ |+.+..+..+..++..+++++..++.+..++..++...
T Consensus 138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~------ 208 (417)
T COG2223 138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP------ 208 (417)
T ss_pred --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch------
Confidence 999999999 889999999999999888888 99888888887777777666654432221111000000
Q ss_pred HHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhh
Q 008158 248 AAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLI 327 (575)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (575)
. ..+.+...++.|
T Consensus 209 -----------~--------------------------------------------------------~~~~v~~~~~~W 221 (417)
T COG2223 209 -----------A--------------------------------------------------------QLKAVFSNKDTW 221 (417)
T ss_pred -----------h--------------------------------------------------------HHHHHhcCcchH
Confidence 0 000111123334
Q ss_pred hhHHHHHHHHHHHHhhccccceeeeecccccccCCCccc-cCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCC
Q 008158 328 KIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQ-IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGIT 406 (575)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~ 406 (575)
....+......-++.+....+. +....++ .. ..++......++...+.-|+.+++ +||++.+
T Consensus 222 ~lsllY~~tFG~Fvgfs~~l~~------~~~~~fg--~~~~~Ag~~a~~f~~~g~l~Rp~GG~L----sDR~Gg~----- 284 (417)
T COG2223 222 LLSLLYFATFGGFVGFSAYLPM------YLVTQFG--LSPVTAGLIAFLFPLIGALARPLGGWL----SDRIGGR----- 284 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHhcC--CChhhHHHHHHHHHHHHHHHHhccchh----hhhccch-----
Confidence 3333333333333333222221 1112221 11 122233344455555666666665 8887654
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHH----HHHHHHHHHHHHHhhhhHHhhhccCCchhHHH
Q 008158 407 LLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA----PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSI 482 (575)
Q Consensus 407 ~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~ 482 (575)
+.....+..+.++........... .+ ..+.+..+ ...++.|+|++. .+..+...+| ++.|.
T Consensus 285 --rv~~~~f~~~~~~~~~l~~~~~~~-----~~---~~~~~~~~~~~l~l~~~~G~GnGs----vfk~Ip~if~-~~~G~ 349 (417)
T COG2223 285 --RVTLAVFVGMALAAALLSLFLTGF-----GH---GGSFVVFVAVFLALFVFAGLGNGS----VFKMIPVIFP-KETGA 349 (417)
T ss_pred --hHHHHHHHHHHHHHHHHHcccccc-----cc---CcchHHHHHHHHHHHHHhccCcch----heeechHHHH-hhhhH
Confidence 334555555555555544432110 00 11222222 233334444444 3333333333 36788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008158 483 ANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 551 (575)
Q Consensus 483 ~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~ 551 (575)
..|+...++.+|++.-+...+...+.++ .+...|+++..+.+++.+..+....|
T Consensus 350 v~G~vga~G~lGGf~lp~~~g~~~~~tg---------------~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 350 VTGIVGAIGGLGGFFLPLAFGVSLDLTG---------------SYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHHHhccccccchhHHHHHHHHhcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888899999888888888877651 24677888888888888877776554
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-19 Score=186.05 Aligned_cols=392 Identities=11% Similarity=0.114 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhH
Q 008158 55 AANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLG 134 (575)
Q Consensus 55 ~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (575)
-+.+++++.++..+++.++|+++||+ |||..+.++.++..++.+...++...+ ...
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~-----------------------~~e 117 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP-----------------------SFE 117 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh-----------------------hHH
Confidence 45678999999999999999999995 999999999999999888888765322 677
Q ss_pred HHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhh--hccccccchhHhHHHH
Q 008158 135 VLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV--YIQDSVSWVIGFGIPT 212 (575)
Q Consensus 135 ~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~--~l~~~~gw~~~f~~~~ 212 (575)
.++++|++.|+..|......+.++.|..|++. ||........+.++|..++..++. .+.+.-.|++.+.+..
T Consensus 118 ~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~ 191 (485)
T KOG0569|consen 118 MLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPL 191 (485)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHH
Confidence 89999999999999999999999999999988 999999999999999999976652 3445567999998888
Q ss_pred HHHHHHHHHHHhcc--ceEEee-CCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhh
Q 008158 213 VLMIGAIILFLVGK--KLYVLV-EPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRF 289 (575)
Q Consensus 213 ~~~~i~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (575)
+..++.+++..+.. |++.-. +.+++.++ +.++. -+.+. +.++.... ...+.........++.+.
T Consensus 192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~---~sl~~----y~G~~-----~~~~~~e~-~~~e~~~~~~~~~~~~sl 258 (485)
T KOG0569|consen 192 IPALLQLALLPFLPESPKYLLIKKGDEEEAR---KALKF----YRGKE-----DVEAEIEE-MLREIEEEELEKKKQISL 258 (485)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHcCCHHHHH---HHHHH----HhCCC-----cchhHHHH-HHHHHHHhccccccCCcH
Confidence 87666666554433 222111 11111111 11111 00000 00000000 000000000000000000
Q ss_pred hhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhhccccceee--eecccccccCCCcccc
Q 008158 290 LNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTV--SQAMKMNRHLGPKFQI 367 (575)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~ 367 (575)
++..+. ...|+.+...+.+ ...+|+.+... .+....-... |++.
T Consensus 259 ----------------------~~~~~~--~~lR~~~~i~~~v--------~~~qq~sGi~ai~~Yst~i~~~a--G~~~ 304 (485)
T KOG0569|consen 259 ----------------------RQLLKN--PTLRRPLLIGIVV--------SFAQQFSGINAIFFYSTSIFKTA--GFTP 304 (485)
T ss_pred ----------------------HHHhcC--cchhHHHHHHHHH--------HHHHHhcCcceeHHHHHHHHHHc--CCCH
Confidence 000000 0111111111111 11122222111 1111111111 1111
Q ss_pred Cccc-----cccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCc
Q 008158 368 PPGT-----VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMS 442 (575)
Q Consensus 368 ~~~~-----~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (575)
.... .+.++.+..++. ..+.||.+|| +++..+..++.+..+.+.......... .
T Consensus 305 ~~a~~an~~~g~v~~~~t~~~--------~~lid~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~~~------~ 363 (485)
T KOG0569|consen 305 EEAQYANLGIGIVNLLSTLVS--------PFLIDRLGRR-------PLLLISLSLMAVALLLMSIALFLSNSF------G 363 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHh------h
Confidence 1111 122233333322 2247887766 346666666666655555443221110 0
Q ss_pred cchhHHHHHHHHHHHHHHHH-HhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCC
Q 008158 443 QVSVFWLAPQLILMGFCEAF-NIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTND 521 (575)
Q Consensus 443 ~~~~~~~i~~~~l~g~g~~~-~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~ 521 (575)
.+-.+..+...++..+..+. ..|..+-+..|.+|++.|+.++++....+++.+++-....+.+.+..
T Consensus 364 ~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~------------ 431 (485)
T KOG0569|consen 364 SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI------------ 431 (485)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 01111122333333333333 36778888999999999999999999999999999999999887654
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 008158 522 IDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSL 561 (575)
Q Consensus 522 ~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~~~~~~~~~ 561 (575)
|. +.|..+++.+++..++.+...+++|+|+..+..
T Consensus 432 ----g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~ 466 (485)
T KOG0569|consen 432 ----GP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEII 466 (485)
T ss_pred ----cc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 11 678888899999988999999999988776543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-19 Score=183.92 Aligned_cols=159 Identities=13% Similarity=0.144 Sum_probs=118.4
Q ss_pred HHHHHHHHhhhhC--CChhhHHHHHHHH--H---HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008158 37 LANFMVYLLKEYH--MNQTSAANILNIW--G---GVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQ 109 (575)
Q Consensus 37 ~~~l~~yl~~~l~--~~~~~~~~i~~~~--~---~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~ 109 (575)
......++.+++. .++++.+.+.+.. . +...+++++.|+++||+ |||+++..+.++..++.++++++.+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (394)
T TIGR00883 12 YGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT 90 (394)
T ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh
Confidence 3456666666654 4455555554432 2 22346789999999995 9999999999999999999888653221
Q ss_pred CCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHH
Q 008158 110 LHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVIL 189 (575)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 189 (575)
. .......+++.|+++|++.+...+....++.|.+|+++ |++..++.+.+..+|..
T Consensus 91 ~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~ 146 (394)
T TIGR00883 91 I------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLL 146 (394)
T ss_pred h------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHH
Confidence 0 00012358899999999999999999999999999877 99999999999999999
Q ss_pred HHhhhhhhcc--------ccccchhHhHHHHHHHHHHHH
Q 008158 190 ITQTVLVYIQ--------DSVSWVIGFGIPTVLMIGAII 220 (575)
Q Consensus 190 ~~~~v~~~l~--------~~~gw~~~f~~~~~~~~i~~~ 220 (575)
+++.++..+. +.++||+.|++.++..++...
T Consensus 147 i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 147 LAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 9998766543 357899999877665554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-18 Score=185.08 Aligned_cols=418 Identities=12% Similarity=0.115 Sum_probs=238.9
Q ss_pred hhHHHHHHHHhhhh-----CCCh--hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q 008158 35 GLLANFMVYLLKEY-----HMNQ--TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWL 107 (575)
Q Consensus 35 ~~~~~l~~yl~~~l-----~~~~--~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~ 107 (575)
+..+.+...+++.. ..+. .+.+++.+++.++..+++++.|+++|++ |||++++.+.+++.+|.++++.+.
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~-- 140 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP-- 140 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh--
Confidence 45555555555532 1122 3458999999999999999999999995 999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHH
Q 008158 108 PQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVV 187 (575)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 187 (575)
+...++++|++.|+|.|+.....+.+++|..|++. |+...+.++...++|
T Consensus 141 ------------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~G 190 (513)
T KOG0254|consen 141 ------------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIG 190 (513)
T ss_pred ------------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999887 999999999999999
Q ss_pred HHHHhhhhhhcccc-ccchhHhHHHHHHHHHHHHHHHhcc--ceEEeeCCCCCcchhHHHHHHHHHHhhcccCCCCCCCC
Q 008158 188 ILITQTVLVYIQDS-VSWVIGFGIPTVLMIGAIILFLVGK--KLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDH 264 (575)
Q Consensus 188 ~~~~~~v~~~l~~~-~gw~~~f~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (575)
..++..++....+. ++||+.+++..+..++..+..++.. |++..+ +++ ..+..+.+......+ +. +.
T Consensus 191 i~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~--~g~-~~~a~~~l~~l~g~~----~~---~~ 260 (513)
T KOG0254|consen 191 ILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE--KGR-LEEAKRSLKRLRGLS----PE---DV 260 (513)
T ss_pred HHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH--cCC-hHHHHHHHHHHhCCC----Cc---ch
Confidence 99996555544432 4899888877766555555533321 221111 110 111111111111100 00 00
Q ss_pred CccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhhc
Q 008158 265 HGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSIS 344 (575)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (575)
+.++ ........... ... .....|+.... ...+|+....+.+ ..+..+.
T Consensus 261 ~~~~-------------------~~~~~~~~~~~----~~~-~~~~~~~~l~~--~~~~~~~~i~~~l-----~~fqq~t 309 (513)
T KOG0254|consen 261 EVEL-------------------ELLKIKLLVEA----EVA-EGKASWGELFS--PKVRKRLIIGLLL-----QLFQQLT 309 (513)
T ss_pred HHHH-------------------HHHHHHHHHhh----hcc-cccccHHHhcC--cchHHHHHHHHHH-----HHHHHHh
Confidence 0000 00000000000 000 00000100000 0111221111111 1111112
Q ss_pred cccceeeeecccccccCCCccccCc----cccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHH
Q 008158 345 QQGTFTVSQAMKMNRHLGPKFQIPP----GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSIL 420 (575)
Q Consensus 345 ~~~t~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~ 420 (575)
.......+.. ..-... +...++ .....++.++.++. ..+.||.+|| ..+..|...+.+
T Consensus 310 G~~~~~~Y~~-~if~~~--g~~~~~~~~~~~~~~v~~~~t~~~--------~~lvd~~gRr-------~lll~s~~~m~~ 371 (513)
T KOG0254|consen 310 GINYVFYYST-TIFKSA--GLKSDTFLASIILGVVNFLGTLVA--------TYLVDRFGRR-------KLLLFGAAGMSI 371 (513)
T ss_pred CCceEEeehH-HHHHhc--CCCCchHHHHHHHHHHHHHHHHHH--------HHHHHHhccH-------HHHHHhHHHHHH
Confidence 2112111111 111111 111111 11112222222222 2347787655 457888888888
Q ss_pred HHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008158 421 SMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSL 500 (575)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~ 500 (575)
++++++........... ......+..++..++..........|..+.+..|.+|.+.|+.+.++....+++.+.+-..
T Consensus 372 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~ 449 (513)
T KOG0254|consen 372 CLVILAVVGVFALYYPN--SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISF 449 (513)
T ss_pred HHHHHHHHHHHhccCCC--cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHH
Confidence 88887776443211110 0012233333333333334444456666778899999999999999999999998888876
Q ss_pred HHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHH-HHHHHHhhccccccccccc
Q 008158 501 LITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIV-YFLYCARRYRYKSGIQSLE 562 (575)
Q Consensus 501 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i-~~~~~~~~~~~~~~~~~~~ 562 (575)
..+...+.. +....|..+++++.+..+ +.+++.+++++++.++.++
T Consensus 450 ~~~~~~~~~----------------~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 450 FFPFITEAL----------------GIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred HHHHHHHhc----------------cccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 666554321 113456777777777766 6777889999888776543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.8e-18 Score=178.69 Aligned_cols=169 Identities=12% Similarity=0.053 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008158 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTV 101 (575)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~ 101 (575)
+++..++..-..+++...+.+.+++++|+|..+.+++.+.+.++..++.++.|++.||+ |||+++..+.+++.++.++.
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence 33444444333456777788888999999999999999999999999999999999995 99999999999999998886
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHH
Q 008158 102 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 181 (575)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 181 (575)
..+.. ..+++.+++.|++.|+|.|...+..++++.+..|+++ |++..++.+
T Consensus 86 ~~~~~-----------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 136 (410)
T TIGR00885 86 WPAAE-----------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQ 136 (410)
T ss_pred HHHHh-----------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHH
Confidence 55431 1157788999999999999999999999999988766 888899999
Q ss_pred HHHHHHHHHHhhhhhhccc--------------------------cccchhHhHHHHHHHHHHHH
Q 008158 182 TTFTVVILITQTVLVYIQD--------------------------SVSWVIGFGIPTVLMIGAII 220 (575)
Q Consensus 182 ~~~~ig~~~~~~v~~~l~~--------------------------~~gw~~~f~~~~~~~~i~~~ 220 (575)
...++|..++|.+++.+.. ..+||++|++.+++.++..+
T Consensus 137 ~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~ 201 (410)
T TIGR00885 137 SFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVAL 201 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988876632 23699999876665444433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=180.54 Aligned_cols=150 Identities=10% Similarity=0.130 Sum_probs=125.2
Q ss_pred HhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008158 32 ATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLH 111 (575)
Q Consensus 32 ~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~ 111 (575)
..+.....+.+.+.+++|+|.++.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++.+.. .++
T Consensus 14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~------ 85 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP------ 85 (355)
T ss_pred CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc------
Confidence 3444556667778889999999999999999999999999999999995 99999999998888777666 332
Q ss_pred CCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHH
Q 008158 112 PPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILIT 191 (575)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~ 191 (575)
+.+.+++.|++.|+|.+...+..+.+..|.+| ++ |+++.++++...++|..++
T Consensus 86 --------------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~ 138 (355)
T TIGR00896 86 --------------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALA 138 (355)
T ss_pred --------------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHH
Confidence 55678899999999999888888888888876 34 8999999999999999999
Q ss_pred hhhhhhccccc--cchhHhHHHHHHHH
Q 008158 192 QTVLVYIQDSV--SWVIGFGIPTVLMI 216 (575)
Q Consensus 192 ~~v~~~l~~~~--gw~~~f~~~~~~~~ 216 (575)
+.+++++.+.. +||+.|.+.++..+
T Consensus 139 ~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 139 AAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99988887654 39988876555433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-17 Score=173.88 Aligned_cols=165 Identities=9% Similarity=0.047 Sum_probs=129.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc-----cchH-HHHHHHHHHHHH
Q 008158 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI-----GRFK-TITFASIAAILG 97 (575)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-----Grr~-~~~~~~~l~~~~ 97 (575)
+..+...+.+.-...-+|.|+++ .|+|.++.|++..+... .+..+++|+++|| + |||| .+..+.++.+++
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHH
Confidence 34445555555566778888885 59999999999666665 6888999999999 6 7775 788888888877
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhh
Q 008158 98 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 177 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 177 (575)
...+++... ..+.+.+++..++.++..+...+...+++.|++|+++ |+++.
T Consensus 82 ~~~l~~~~~-----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~ 132 (402)
T PRK11902 82 IAAMAFCPP-----------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGA 132 (402)
T ss_pred HHHHHhcCc-----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHH
Confidence 777766421 1246667777777888888889999999999999877 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccc-ccchhHhHHHHHHHHHHHHH
Q 008158 178 NWYYTTFTVVILITQTVLVYIQDS-VSWVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 178 ~~~~~~~~ig~~~~~~v~~~l~~~-~gw~~~f~~~~~~~~i~~~~ 221 (575)
++...+.++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 133 ~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 133 AVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888875 59999999877765554443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=173.29 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=123.2
Q ss_pred hhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc----ccchHHH-HHHHHHHHHHHHHHHHHhhcC
Q 008158 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY----IGRFKTI-TFASIAAILGMLTVTLTAWLP 108 (575)
Q Consensus 34 ~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~----~Grr~~~-~~~~~l~~~~~~~~~~~~~~~ 108 (575)
+++.....+.+.+++|+|.++.++.... .+...+ .++.|+++||+ +||||.+ +.+.++..+.+...++...
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-- 79 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-- 79 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc--
Confidence 3455666667777899999999999655 344444 88999999994 3899974 5666666666666655431
Q ss_pred CCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHH
Q 008158 109 QLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVI 188 (575)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 188 (575)
..+.+.+....++.+++.+...+...+++.|++|+++ |+++.++...+.++|.
T Consensus 80 ---------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~ 132 (356)
T TIGR00901 80 ---------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM 132 (356)
T ss_pred ---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence 1245566677777888888888999999999999877 9999999999999999
Q ss_pred HHHhhhhhhcccccc--------chhHhHHHHHHHHHHHHHHHh
Q 008158 189 LITQTVLVYIQDSVS--------WVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 189 ~~~~~v~~~l~~~~g--------w~~~f~~~~~~~~i~~~~~~~ 224 (575)
++++.+++++.+..+ ||..|++.++..++.++..++
T Consensus 133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887777 999999888776665554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-16 Score=164.53 Aligned_cols=426 Identities=12% Similarity=0.017 Sum_probs=241.1
Q ss_pred HHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhh---cccchHHHHHH-HHHHHHHHHHHHHHhh
Q 008158 31 LATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDT---YIGRFKTITFA-SIAAILGMLTVTLTAW 106 (575)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~---~~Grr~~~~~~-~~l~~~~~~~~~~~~~ 106 (575)
+++-...+++++|+ +++|.+....+.+..+..+...+.+|+.|+++|| .+||||.++.+ ....+++..+++++.+
T Consensus 18 ~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~ 96 (477)
T TIGR01301 18 FGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD 96 (477)
T ss_pred HHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence 44333445555655 6899999999999999999999999999999994 25999998875 5555566666666543
Q ss_pred cCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHH
Q 008158 107 LPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 186 (575)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 186 (575)
+..+..++. . ...........+++..+..++....++...++++|.+|+++ ++++.++++.+...++
T Consensus 97 ~~~~~~~~~--~-------~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~----~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 97 IGHLFGDNL--D-------KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA----RRTRIANAYFSFFMAI 163 (477)
T ss_pred hhhhccccc--c-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh----HHHHHHHHHHHHHHHH
Confidence 221111000 0 00001112334555555666788788888999999999876 2346899999999999
Q ss_pred HHHHHhhhhhhc--ccc-------------ccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHH
Q 008158 187 VILITQTVLVYI--QDS-------------VSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYK 251 (575)
Q Consensus 187 g~~~~~~v~~~l--~~~-------------~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (575)
|.++|+.++++. .+. .+.+..|++.+++.++..++..+..++.+..++++. .
T Consensus 164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~-~------------ 230 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF-I------------ 230 (477)
T ss_pred HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc-h------------
Confidence 999999988864 111 156889998888777776665554443221111100 0
Q ss_pred hhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHH
Q 008158 252 KRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIP 331 (575)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (575)
+.+.+..+ +.+ ....+.+. | +.-..--|.+.+.+.
T Consensus 231 ~~~~~~~~---~~~-------------------~~~~~~~i-------------------~----~~~~~mP~~m~~l~~ 265 (477)
T TIGR01301 231 NSEAAPPS---KHG-------------------EEAFFGEL-------------------F----GAFKYLPRPVWILLL 265 (477)
T ss_pred hhhccccc---ccc-------------------hhhhHHHH-------------------H----HHHHHCCHHHHHHHH
Confidence 00000000 000 00000000 0 000011123333444
Q ss_pred HHHHHHHHHHhhccccceeeeeccccccc-CCCccccC---ccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCCh
Q 008158 332 IWAAGIISLTSISQQGTFTVSQAMKMNRH-LGPKFQIP---PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITL 407 (575)
Q Consensus 332 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~---~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~ 407 (575)
...+...-|..+..+.|.+..+..+-... ....++-. ..+...++.+...+. +.++.++.+|+++|
T Consensus 266 vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~----s~~l~~l~~~~g~~------ 335 (477)
T TIGR01301 266 VTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGIT----SIGMEKLCRGWGAG------ 335 (477)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccc------
Confidence 44444444554444445332221111100 00000000 111112233332222 22334446665432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhc--ccccC-C--Cccch-hHHHHHHHHHHHHHHHHHhhhhHHhhhccCCc--hh
Q 008158 408 LQRIGIGMIFSILSMIVAGLVERGRRA--SAHLH-P--MSQVS-VFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD--HM 479 (575)
Q Consensus 408 ~~~i~ig~~~~~~~~~~~~~~~~~~~~--~~~~~-~--~~~~~-~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~--~~ 479 (575)
+..-.++.++.++++....+......+ ....+ . .++.. .+..+..+.+.|++.+..+..-++.+.+..|+ +.
T Consensus 336 k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~ 415 (477)
T TIGR01301 336 KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAG 415 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCC
Confidence 233467777888887777655421100 00000 0 01111 35566677888999999999999999999995 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008158 480 KSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 552 (575)
Q Consensus 480 rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~ 552 (575)
.|..+|+.|+.-.+...+.....+.+.+..+. +..+++.+.++.++++.+..++..++.
T Consensus 416 ~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 416 QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 69999999999999999999888875554421 223567777888888877777765553
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.3e-18 Score=171.15 Aligned_cols=407 Identities=14% Similarity=0.034 Sum_probs=224.3
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCc
Q 008158 50 MNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSAN 129 (575)
Q Consensus 50 ~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (575)
.+....+.+.++..++..+++++.||++||+ |||+++...+++++++++.++++.. .++.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~-------------------~~~~ 140 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVG-------------------TTSP 140 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCC-------------------CCCC
Confidence 5667788899999999999999999999995 9999999999999999997776432 1111
Q ss_pred chhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhh----hhcc----c-
Q 008158 130 SMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL----VYIQ----D- 200 (575)
Q Consensus 130 ~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~----~~l~----~- 200 (575)
..-+.++...|+++|+|.|+-+|+..+..+|...... ||...+..-.....|.+.|.++. +-.- .
T Consensus 141 ~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~ 214 (538)
T KOG0252|consen 141 LGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGP 214 (538)
T ss_pred cchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCC
Confidence 2357889999999999999999999998888766544 88777765555555555444333 2211 1
Q ss_pred ------cccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhH-HHHHHHHHHhhcccCCCCCCCCCccccCCCC
Q 008158 201 ------SVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI-GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPP 273 (575)
Q Consensus 201 ------~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (575)
..=||..|.+.++..++.+ .+. -+.|+....+.. .+-.+.+.++ ..+... . .+-+++.
T Consensus 215 ~~~~~ld~vWRl~~glg~vpa~~~l---y~R-----l~M~Et~~Y~al~~~~~~~a~~d-~~k~~~---~---~~~~~~~ 279 (538)
T KOG0252|consen 215 STYPHLDGVWRIIFGLGAVPALLVL---YFR-----LKMPETARYTALVSKKLKQAAGD-MKKVLS---V---DIEAEST 279 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHH---Hhh-----hcCCcchhHHHHhhcCHhhhhhc-cccccc---c---ccchhhc
Confidence 1239998887666443222 211 111111111100 0000111100 000000 0 0000000
Q ss_pred cccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhhccccceeeee
Q 008158 274 KLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQ 353 (575)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 353 (575)
.+ ...+++..+..+. .....++ ...-++.+...++..-.-+.+....+
T Consensus 280 ~~----------------------------~~~~~~~~~~~~F---~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~ 327 (538)
T KOG0252|consen 280 AE----------------------------SDVPPPSNSFGLF---SRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQ 327 (538)
T ss_pred cc----------------------------cCCCCcccccchH---HHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHH
Confidence 00 0001111111000 0011111 11222333334443332233322222
Q ss_pred cccccccCCCccccCccc-cc-------cchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHH
Q 008158 354 AMKMNRHLGPKFQIPPGT-VG-------VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVA 425 (575)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~-~~-------~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~ 425 (575)
....+. ++ ..++. .. -.+.+.+.......-|+...+.|+++|| +.-..|++++.+-++.+
T Consensus 328 s~I~~~-ig----~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-------~iq~~GF~~~~i~~~~~ 395 (538)
T KOG0252|consen 328 SVIFSA-IG----VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-------YIQLMGFFIMTIFFFVI 395 (538)
T ss_pred HHHHHh-hc----cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-------HHHHhhHHHHHHHHHHH
Confidence 221110 10 11111 01 1122222222222334445567887665 45677888888877777
Q ss_pred HHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008158 426 GLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 505 (575)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i 505 (575)
+...+.. .......+...+...+++..-..+...+..|.+|++.||+.-|++-..+-+|.+++.....+.
T Consensus 396 ~~~y~~~----------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~ 465 (538)
T KOG0252|consen 396 AGPYNQL----------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYL 465 (538)
T ss_pred cCCcccc----------cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHh
Confidence 6543210 001111222223334455444555666778999999999999999999999999999888776
Q ss_pred hhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 008158 506 HGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLED 563 (575)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~~~~~~~~~~~ 563 (575)
.+. + ++ ...+..+++++++++++++.++.+++- +.++++.++.+++
T Consensus 466 t~~-------~-yp---~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei~~e 511 (538)
T KOG0252|consen 466 TDH-------N-YP---PNIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEISNE 511 (538)
T ss_pred hhc-------c-CC---ccccchHHHHHHHHHHHHhHheeEEee-cccccCHHHhcCh
Confidence 652 1 11 122667889999999999988777664 8888877665443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=182.59 Aligned_cols=205 Identities=15% Similarity=0.149 Sum_probs=153.2
Q ss_pred CCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 008158 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (575)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l 93 (575)
..++.+.+.++...+......++.....+.++++++++.++.|++.+.+.++..++.++.|+++||+ ||||.+.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence 3445554555545555555567777888899999999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHHhhcCC-C---------------CCCCCCCCC---C----CCCccCCCc--chhhHHHHHHHHHHHHhcc
Q 008158 94 AILGMLTVTLTAWLPQ-L---------------HPPKCDVAK---P----PFGQCKSAN--SMQLGVLVMGLGLLSIGTG 148 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~---~----~~~~~~~~~--~~~~~~l~~~~~l~g~g~g 148 (575)
+.+|++++++.+.+.. + ....|.... . ....|.... ......++++|+++|+|.+
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 9999999988653211 0 011221100 0 001222211 1135668899999999999
Q ss_pred CCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccc----------------------cchh
Q 008158 149 GIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV----------------------SWVI 206 (575)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~----------------------gw~~ 206 (575)
...+...+++.|.+|+++ |+..+++++.+..+|..+|+.+++++.+.+ +|+.
T Consensus 188 ~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl 261 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI 261 (633)
T ss_pred cchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence 999999999999999887 999999999999999999999999876432 2777
Q ss_pred HhHHHHHHHHHHHHHHHhc
Q 008158 207 GFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 207 ~f~~~~~~~~i~~~~~~~~ 225 (575)
.|++.+++.++..+.+++.
T Consensus 262 ~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 262 GFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 7887776655554444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-17 Score=160.68 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=106.0
Q ss_pred hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCC
Q 008158 48 YHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKS 127 (575)
Q Consensus 48 l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (575)
.+-+..-.|.+-+.|.+.+++.++.+|.++||+ |||+++++|.+..++...+.+.+.
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~---------------------- 119 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR---------------------- 119 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 334557789999999999999999999999997 999999999999999888888876
Q ss_pred CcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 008158 128 ANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD 200 (575)
Q Consensus 128 ~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~ 200 (575)
++..++++|++.|+.-|-.. .+.++++|.+++++ |+.+++.......+|.++||.+||++.+
T Consensus 120 ----~F~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 ----NFAAFVLARFLGGIFKGNLS-VIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ----HHHHHHHHHHhhhhccCchH-HHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 56667778999999988764 46899999999988 9999999999999999999999999987
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-16 Score=166.73 Aligned_cols=182 Identities=12% Similarity=0.092 Sum_probs=130.4
Q ss_pred hcccccCCCcchhHHHHHHHHHHHHHhh---hhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccc
Q 008158 7 QKDQKKPGGWKAMPYILGNETFERLATI---GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGR 83 (575)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr 83 (575)
|..|++...-+.+...+....+...+.| .......+++.+++|- .....|+.....++.....++.|.|+|. |||
T Consensus 30 ~~~p~g~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDl-fGR 107 (599)
T PF06609_consen 30 DELPDGYYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDL-FGR 107 (599)
T ss_pred hhCCCCceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHH-hcc
Confidence 3334444444444444333333332222 2334566788999985 4778899999999999999999999999 599
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCC
Q 008158 84 FKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 163 (575)
Q Consensus 84 r~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~ 163 (575)
|..++.+.++.++|+++++-++ ++..++.+-.+.|+|.|.... ....++|..|
T Consensus 108 r~~~i~g~~l~vvG~Iv~atA~--------------------------~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p 160 (599)
T PF06609_consen 108 RYFFIIGSLLGVVGSIVCATAQ--------------------------NMNTFIAGMVLYGVGAGVQEL-AALAISELVP 160 (599)
T ss_pred hHHHHHHHHHHHhHHHHhhcCC--------------------------cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcc
Confidence 9999999999999999999876 566789999999999877664 4566899998
Q ss_pred CCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 164 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 164 ~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
.+. |.....+.....-+....++.++..+....+|||.|++.++...+++++.+
T Consensus 161 ~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 161 NKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred cch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 755 766666555544444445566665555567899999998877666555433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-15 Score=161.19 Aligned_cols=150 Identities=10% Similarity=0.035 Sum_probs=99.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchHHH-HHHHHHHHHHHHH
Q 008158 25 NETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFKTI-TFASIAAILGMLT 100 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~~-~~~~~l~~~~~~~ 100 (575)
..+...+.+.....+++.|+++.+|++..++|.+.....+...+..++.|+++||. +||||.. +.+.+...+..+.
T Consensus 16 g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~ 95 (448)
T PRK09848 16 GDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL 95 (448)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence 44445555555667888999999999999999999999999999999999999993 3777755 5555545444433
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHH
Q 008158 101 VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWY 180 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 180 (575)
...... .. .........++...+.+++.+...+...++..+..++.+ +|.+..++.
T Consensus 96 ~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~r~~~~~~r 151 (448)
T PRK09848 96 VFWVPT--DW-----------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-----SRARLGAAR 151 (448)
T ss_pred HHhCcC--CC-----------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-----HHHHHHHHH
Confidence 321110 00 001123344555567788888888888887777776533 277776665
Q ss_pred HHH-----HHHHHHHHhhhhhhc
Q 008158 181 YTT-----FTVVILITQTVLVYI 198 (575)
Q Consensus 181 ~~~-----~~ig~~~~~~v~~~l 198 (575)
.++ .+++..++|.+.+..
T Consensus 152 ~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 152 GIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 543 345566666665543
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.6e-16 Score=160.21 Aligned_cols=176 Identities=10% Similarity=0.081 Sum_probs=145.4
Q ss_pred CCcchhHHHHHHH-HHHHHHhhhhHHHHHHHHhhhhCCChhh-HHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH
Q 008158 14 GGWKAMPYILGNE-TFERLATIGLLANFMVYLLKEYHMNQTS-AANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS 91 (575)
Q Consensus 14 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~yl~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~ 91 (575)
..|+....++|.. |+..+ -...++..+|+.+++|+++++ .|.+.+++..++.++.+++|+++||+ |.|+++..+.
T Consensus 23 ~~W~~~~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~ 99 (511)
T TIGR00806 23 KSWRVLVLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQA 99 (511)
T ss_pred cchhHHHHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHH
Confidence 3566666555432 22211 234567788999999999999 99999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 92 IAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
+...+.+++.+++. +...+.+.|++.|++.|+.. +...++..++|+++
T Consensus 100 l~Wsl~t~L~~fa~--------------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE----- 147 (511)
T TIGR00806 100 LSFVCVWLLLLLGT--------------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR----- 147 (511)
T ss_pred HHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH-----
Confidence 99999999999976 57789999999999999999 99999999999988
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhH---HHHHHHHHHHHHHHhcc
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFG---IPTVLMIGAIILFLVGK 226 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~---~~~~~~~i~~~~~~~~~ 226 (575)
|+++.++...+.++|.++++++++++ ..+|||+-+. ++.....+++++.+++.
T Consensus 148 -R~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 148 -YQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999995 4579986543 44555555555555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-15 Score=152.82 Aligned_cols=155 Identities=14% Similarity=0.019 Sum_probs=128.8
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
.|.-..+++.-|+.+-......-.+.+.+++.+|++..|++++...+..++.+++++.|++.+|+ |+|+.++.|+.+++
T Consensus 11 ~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~a 89 (422)
T COG0738 11 VKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYA 89 (422)
T ss_pred ceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHH
Confidence 34334444444444333355667889999999999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
+|..+..-+++ ...+..++++.++.|.|.+..+.+.+++++...|+++ -..
T Consensus 90 vg~~lF~pAa~-----------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~ 140 (422)
T COG0738 90 VGAALFWPAAS-----------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAF 140 (422)
T ss_pred HHHHHHhhhhh-----------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHH
Confidence 99988864432 2367788999999999999999999999999999866 566
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccc
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQD 200 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~ 200 (575)
-++..+....+|+.++|.+++++..
T Consensus 141 rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 141 RLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6777788889999999999988765
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=163.96 Aligned_cols=172 Identities=10% Similarity=0.057 Sum_probs=119.2
Q ss_pred HHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchH-HHHHHHHHHHHHHHHHHH
Q 008158 28 FERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFK-TITFASIAAILGMLTVTL 103 (575)
Q Consensus 28 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~-~~~~~~~l~~~~~~~~~~ 103 (575)
-..+.+..+..+++.|+.+.+|+|...+|.+..+..+...+..|+.|+++||. +|||| .++.+.+...++.++...
T Consensus 20 ~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~ 99 (444)
T PRK09669 20 ACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFY 99 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 33444455677899999999999999999999999999999999999999993 37754 555666666666554443
Q ss_pred HhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHH
Q 008158 104 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 183 (575)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (575)
.+..++ ......+++..++.+++..+......++.+|+.++.+ +|.+..++...+
T Consensus 100 ~p~~~~--------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r~~~ 154 (444)
T PRK09669 100 TPDFGA--------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWRFAL 154 (444)
T ss_pred CCCCCc--------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHHHHH
Confidence 221100 1234556666666777777777778889999885432 388898998888
Q ss_pred HHHHHHHHhhhhhhccc-------cccchhHhHHHHHHHHHHHHHHHh
Q 008158 184 FTVVILITQTVLVYIQD-------SVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 184 ~~ig~~~~~~v~~~l~~-------~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
.++|..+++.+...+.. ..+|+..+.+.+++.++..++.++
T Consensus 155 ~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~ 202 (444)
T PRK09669 155 SFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFF 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 88888887754433221 347887777666555544444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-15 Score=163.03 Aligned_cols=169 Identities=8% Similarity=0.003 Sum_probs=115.5
Q ss_pred HHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhh----hcccch-HHHHHHHHHHHHHHHHHHH
Q 008158 29 ERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISD----TYIGRF-KTITFASIAAILGMLTVTL 103 (575)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD----~~~Grr-~~~~~~~~l~~~~~~~~~~ 103 (575)
..+.+..+.++++.|+++.+|++...+|.+..+.-+...+..|+.|+++| | +||| +-++.+.+...++.+++..
T Consensus 18 ~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~llf~ 96 (473)
T PRK10429 18 KDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLFLLFS 96 (473)
T ss_pred HhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHHHHHc
Confidence 34444556788999999999999999999999999999999999999999 6 4985 5566676666666555533
Q ss_pred HhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHH
Q 008158 104 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 183 (575)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (575)
....+ +......+++..++.+++..+......++..|..++.+ +|.+..++....
T Consensus 97 ~p~~~--------------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~~~ 151 (473)
T PRK10429 97 AHLFE--------------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPRFF 151 (473)
T ss_pred CCCCC--------------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHHHH
Confidence 21100 01134455556667788888888888899999885432 299999987777
Q ss_pred HHHHHHHHhhhhhhc----c---ccccchhHhHHHHHHHHHHHHHHH
Q 008158 184 FTVVILITQTVLVYI----Q---DSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 184 ~~ig~~~~~~v~~~l----~---~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
.++|+.+++.+...+ . +..+|+....+.+++.++..+..+
T Consensus 152 ~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~ 198 (473)
T PRK10429 152 ASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL 198 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 788766665444322 1 123566665555554444444333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=158.78 Aligned_cols=149 Identities=11% Similarity=0.061 Sum_probs=135.1
Q ss_pred hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccC
Q 008158 47 EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCK 126 (575)
Q Consensus 47 ~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (575)
.++-++++.|++.+.+.+.+.+..++.|.+.|| +|+|-.+++|+.++...++++++..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~--------------------- 157 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN--------------------- 157 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence 456678999999999999999999999999999 5999999999999999999999976
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchh
Q 008158 127 SANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVI 206 (575)
Q Consensus 127 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~ 206 (575)
+++.++++|.++|+|.++...+..++++|.||+++ +|++++++.-.+..+|-++||..||.+-+..|.+.
T Consensus 158 -----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~a 227 (464)
T KOG3764|consen 158 -----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSA 227 (464)
T ss_pred -----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcC
Confidence 67789999999999999999999999999999876 49999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhccc
Q 008158 207 GFGIPTVLMIGAIILFLVGKK 227 (575)
Q Consensus 207 ~f~~~~~~~~i~~~~~~~~~~ 227 (575)
+|++.++..++-..+-++..+
T Consensus 228 PFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 228 PFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred cHHHHHHHHHHHHHHHHheeC
Confidence 999988777776666554433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-15 Score=165.43 Aligned_cols=142 Identities=13% Similarity=0.021 Sum_probs=127.2
Q ss_pred hhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcc
Q 008158 46 KEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQC 125 (575)
Q Consensus 46 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (575)
+..+.+.....+..+++.++..+++++.|+++|| +|||++++++.++.+++.+..+++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~-------------------- 169 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP-------------------- 169 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 5567788889999999999999999999999999 5999999999999999999999987
Q ss_pred CCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccch
Q 008158 126 KSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWV 205 (575)
Q Consensus 126 ~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~ 205 (575)
+++.+++.|++.|++.++...+...+++|.+++++ |+.+..+ ......++.+++.+++++.. +||
T Consensus 170 ------~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr 234 (521)
T KOG0255|consen 170 ------NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWR 234 (521)
T ss_pred ------cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHH
Confidence 78889999999999999999999999999999988 9999999 77778888889999998877 899
Q ss_pred hHhHHHHHHHHHHHHHHH
Q 008158 206 IGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 206 ~~f~~~~~~~~i~~~~~~ 223 (575)
+.+++..+...+.++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~ 252 (521)
T KOG0255|consen 235 WLFWIISIPSGLFLLLWF 252 (521)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999987776665555533
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-15 Score=155.36 Aligned_cols=177 Identities=11% Similarity=-0.015 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHH--HHHHHHHHHHHhhhh-HHHhhhcccchHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANI--LNIWGGVTNFAPLLG-AFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i--~~~~~~~~~~~~~~~-G~laD~~~Grr~~~~~~~~l~~ 95 (575)
...+.+..+...+.+....+.+|.|++ +.|.|.++.|.. .+.......+.+|+. ++..||+ ||||..++.+.+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 344556667777776656677777776 569999999997 456677776777666 6689995 99998765553322
Q ss_pred H-HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchh
Q 008158 96 L-GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 174 (575)
Q Consensus 96 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 174 (575)
. .....+... +. .....++.....+.++..+..-+...++..|..++++ ++
T Consensus 81 ~~~~~~~~~~~--~~--------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~ 132 (390)
T TIGR02718 81 SACLASLALVG--PD--------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LA 132 (390)
T ss_pred HHHHHHHHcCC--cc--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hh
Confidence 2 222222111 00 0012233444444555555555555556666665544 67
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhc
Q 008158 175 SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 175 ~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
...+...++..+|..+|+.+.+++.+.+|||..|++.+++.++..+..++.
T Consensus 133 ~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 133 KGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 777778888889999999888899988999999998887666555554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-21 Score=204.98 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchh
Q 008158 53 TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQ 132 (575)
Q Consensus 53 ~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (575)
...+++.+...++..++.+++|+++||+ |||++++.+..+..++.++.++++.. .+
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-----------------------~~ 101 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-----------------------NN 101 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-----------------------cc
Confidence 3468899999999999999999999995 99999999999999999999887521 14
Q ss_pred hHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccc---cccchhHhH
Q 008158 133 LGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD---SVSWVIGFG 209 (575)
Q Consensus 133 ~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~---~~gw~~~f~ 209 (575)
...+.++|++.|+|.|+..+..+.++.|..|++. |+...++.+.+..+|..++..++-.+.+ ..+||+.+.
T Consensus 102 ~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~ 175 (451)
T PF00083_consen 102 FWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLI 175 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence 5679999999999999999999999999999987 9999999999999998888766543332 245999998
Q ss_pred HHHHHHHHHHHHH
Q 008158 210 IPTVLMIGAIILF 222 (575)
Q Consensus 210 ~~~~~~~i~~~~~ 222 (575)
+..+..++.++..
T Consensus 176 ~~~~~~l~~~~~~ 188 (451)
T PF00083_consen 176 FGAIPSLLVLLLR 188 (451)
T ss_pred ccccccccccccc
Confidence 8777655444433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-14 Score=156.74 Aligned_cols=372 Identities=11% Similarity=0.065 Sum_probs=218.6
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc-----chHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIG-----RFKTITFASIA 93 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G-----rr~~~~~~~~l 93 (575)
...+.+..+...+. +.+...+.+++++++|++.++.+...+...+...+-++ +|.++||+ + ||+.++++.++
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence 34445577888887 77888899999999999999999999999999888766 89999995 7 66777776655
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 94 AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
.. ......++. + +.......+.+++.+++.+..-.+.-++..|..+ +++ +.+
T Consensus 105 ~~-~~~~~~l~~--~---------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~ 156 (468)
T TIGR00788 105 GS-AILYGLLPG--K---------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAG 156 (468)
T ss_pred HH-HHHHHhccc--c---------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcC
Confidence 53 122222221 0 0123334457788999999988999999999998 331 234
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhh
Q 008158 174 NSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKR 253 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (575)
+...++.+.+.++|..+|+.++|++.+.++|+..|++.+++.++..+..++.+++.....|+..+..... +...
T Consensus 157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~------~~~~ 230 (468)
T TIGR00788 157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMN------MALL 230 (468)
T ss_pred CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhh------hhhh
Confidence 5567777777889999999999999998899999998777666554433433322100111100000000 0000
Q ss_pred cccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhH------hhhh
Q 008158 254 RLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEV------KCLI 327 (575)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 327 (575)
.. ...+. ..+...+. +.++
T Consensus 231 ---~~-----------------------------~~~~~-----------------------~~~~~~~l~~~l~~~~i~ 255 (468)
T TIGR00788 231 ---TL-----------------------------GVLAN-----------------------VKVQILGLRGAIQLLEIA 255 (468)
T ss_pred ---hh-----------------------------hHHHH-----------------------HHHHHHHHHHHHhcHHHH
Confidence 00 00000 00000011 1111
Q ss_pred hhHHHHHHHHHHHHhhcccc-ceeeeecccccccCCCccccCccccccc---hhHhhHhhhhcccchhHHHhhhhhcCCC
Q 008158 328 KIIPIWAAGIISLTSISQQG-TFTVSQAMKMNRHLGPKFQIPPGTVGVI---SMITIGLWLPFYDTVLVPALRKITKHEG 403 (575)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~i~~~~~~~~~~~~~~r~~~r~~ 403 (575)
..+. +..+.+....... +.+..+. ...+ .++...+.+ ..++.++...+ .+|+.+|
T Consensus 256 ~~l~---fifl~~~~~~~~~~~~f~~~~----~~lG----~s~~~~G~~~~~~~v~~i~g~~~--------~~~~~~~-- 314 (468)
T TIGR00788 256 KPLI---FIFLSYANLPGASGSVFCATT----QCLP----GGPSFSGMSKVVGNLGSLCGVGG--------YDRFLKT-- 314 (468)
T ss_pred HHHH---HHHHHHhhcCCCCceeEEEEc----ccCC----CCcchhhhHHHHHHHHHHHHHHH--------HHHHHhh--
Confidence 1111 1111011111111 1111111 1122 233333332 33333333332 4444433
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHH
Q 008158 404 GITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIA 483 (575)
Q Consensus 404 ~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~ 483 (575)
.+.++.+.++.++.+++.+........ ... ..+ ..+.+......++.+++.++...+...++.+..|++.+|+.
T Consensus 315 -~~~r~~l~~~~~l~~~~~~~~~~l~~~-~~~--~~g--i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~ 388 (468)
T TIGR00788 315 -FPYRLLFGVTTLLYTLSSLFDLILVKR-WNL--AFG--ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSV 388 (468)
T ss_pred -CCHHHHHHHHHHHHHHHHhCceeeeec-ccc--ccC--CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehH
Confidence 356677777777777766443221100 000 000 01122333445677888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008158 484 NSLLFCSFGFASYLSSLLITIVHGVT 509 (575)
Q Consensus 484 ~g~~~~~~~lg~~l~~~l~~~i~~~~ 509 (575)
.++.++..++|..+++.+.+.+.+..
T Consensus 389 ~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 389 FALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998888764
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-14 Score=149.75 Aligned_cols=385 Identities=11% Similarity=0.076 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008158 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTV 101 (575)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~ 101 (575)
+....++....+-...++++.|+++ .|+|..|.|.+.++..+...+.+++.|+++||+..+||.+.+..++..+.....
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344455545544566788888885 679999999999999999999999999999996346777776666666655555
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHH
Q 008158 102 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 181 (575)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 181 (575)
...+ +.+.+++..++..+......|...++..+...+ ++.-++-..
T Consensus 86 ~~~~--------------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iR 131 (400)
T PF03825_consen 86 AFSS--------------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIR 131 (400)
T ss_pred HHhc--------------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcch
Confidence 4433 445566666667777777777777776666553 222233333
Q ss_pred HHHHHHHHHHhhh-hhhccccc---cchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccC
Q 008158 182 TTFTVVILITQTV-LVYIQDSV---SWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTL 257 (575)
Q Consensus 182 ~~~~ig~~~~~~v-~~~l~~~~---gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (575)
...++|..++... ++++.... +..+.+++.+...++.....+. .|+.+.++..++..+
T Consensus 132 lwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~----------------- 193 (400)
T PF03825_consen 132 LWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVK----------------- 193 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCcc-----------------
Confidence 3344555544322 12222211 2234455554433322222222 222110000000000
Q ss_pred CCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHH
Q 008158 258 PQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGI 337 (575)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (575)
+. . ..| .+ +..++++.+.-.+..++...
T Consensus 194 ~~----~------------------------~~~-------------------~~-----~llk~~~~~~Fll~~~l~~~ 221 (400)
T PF03825_consen 194 KL----L------------------------GLD-------------------AL-----KLLKNPRFLVFLLAAFLIGI 221 (400)
T ss_pred cc----c------------------------chH-------------------HH-----HHhcCccHHHHHHHHHHHHH
Confidence 00 0 000 00 00001111110111111111
Q ss_pred HHHHhhccccceeeeecccccccCCCccccC-ccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHH
Q 008158 338 ISLTSISQQGTFTVSQAMKMNRHLGPKFQIP-PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMI 416 (575)
Q Consensus 338 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~ 416 (575)
.... +..+.+.+ .+... +.... .+....+..+. +-...-..+|+-+| .+..+.+.++.+
T Consensus 222 ~~~~-~~~f~~~y------l~~~g--g~~~~~~g~~~~l~~~a--------Ei~~f~~~~~~~~r---~g~~~ll~~a~~ 281 (400)
T PF03825_consen 222 SHAA-YYTFFSIY------LQELG--GYSGSTIGILWALGVVA--------EIPFFFFSGRFLKR---FGIKWLLLLALV 281 (400)
T ss_pred HHHH-HHHHHHHH------HHHcc--cchhhHHHHHHHHHHHH--------HHHHHHHHHHHHHh---cCHHHHHHHHHH
Confidence 1111 11111111 11111 10000 11111122222 22222235555555 356677777777
Q ss_pred HHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHH-HHHHHH
Q 008158 417 FSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC-SFGFAS 495 (575)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~-~~~lg~ 495 (575)
..++=..++...... ....+....+..++.|+..++.......|+.+.+|++.|++++++++. ...+|.
T Consensus 282 ~~~vR~~l~a~~~~~----------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~ 351 (400)
T PF03825_consen 282 AYAVRWLLYAYFSDP----------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGG 351 (400)
T ss_pred HHHHHHHHHHHhcCC----------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHH
Confidence 766665555544110 001112223334578999999999999999999999999999999875 567999
Q ss_pred HHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008158 496 YLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 551 (575)
Q Consensus 496 ~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~ 551 (575)
.++..+.|++.|..+.+..- .+..++.+.+++.++..++++++.|+
T Consensus 352 ~iG~~igG~l~~~~g~~~~~----------~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 352 AIGSLIGGWLYDAFGARGMF----------DWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHhcchhhh----------hHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999865322111 12345566677777776677666443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-15 Score=159.68 Aligned_cols=151 Identities=11% Similarity=0.041 Sum_probs=126.0
Q ss_pred HhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 008158 44 LLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFG 123 (575)
Q Consensus 44 l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (575)
+.+++|+...+.+.+.++|.+++.++.+++|.|.||+ .-.+.+....+++.+-.++....+
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------ 132 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------ 132 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 3478899999999999999999999999999999995 877777666666665554444444
Q ss_pred ccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhc-----
Q 008158 124 QCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI----- 198 (575)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l----- 198 (575)
+.+.+++.|+++|+.+++..|+...+++.+|.++| |+.-+++++.+.++|.++|..+...+
T Consensus 133 --------s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~ 198 (495)
T KOG2533|consen 133 --------SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNG 198 (495)
T ss_pred --------hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence 67779999999999999999999999999999988 99999999999999999999888764
Q ss_pred -cccccchhHhHHHHHHHHHHHHHHHhccc
Q 008158 199 -QDSVSWVIGFGIPTVLMIGAIILFLVGKK 227 (575)
Q Consensus 199 -~~~~gw~~~f~~~~~~~~i~~~~~~~~~~ 227 (575)
....||||.|++.+++.++..++.++..|
T Consensus 199 ~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 199 SGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred CCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 33479999999988776665555544333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-15 Score=157.56 Aligned_cols=354 Identities=11% Similarity=0.036 Sum_probs=219.1
Q ss_pred HHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhh----hcccchHHH-HHHHHHHHHHHHHHHHH
Q 008158 30 RLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISD----TYIGRFKTI-TFASIAAILGMLTVTLT 104 (575)
Q Consensus 30 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD----~~~Grr~~~-~~~~~l~~~~~~~~~~~ 104 (575)
.+.+.....+++.|+.+.+|+++...+.+..+.-+...+..|+.|+++| | +||||.+ +.+.++..++.+++...
T Consensus 14 ~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~llf~~ 92 (428)
T PF13347_consen 14 NMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLLFSP 92 (428)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHhhcc
Confidence 3444445678899999999999999999999999999999999999999 7 5977654 45667777776666643
Q ss_pred hhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHH
Q 008158 105 AWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 184 (575)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (575)
. |. ..+.......+.+..++..++.........++..|..++.+ +|.+..++...+.
T Consensus 93 ~--p~----------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~ 149 (428)
T PF13347_consen 93 P--PA----------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFS 149 (428)
T ss_pred c--cc----------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHH
Confidence 1 10 00001134455777777799999999999999999998643 3999999998888
Q ss_pred HHHHHHHhhhhhhcccc-------ccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccC
Q 008158 185 TVVILITQTVLVYIQDS-------VSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTL 257 (575)
Q Consensus 185 ~ig~~~~~~v~~~l~~~-------~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (575)
.+|.++...+.+.+.+. .+|++...+.+++..+..++.++..|+..++.+++++. .
T Consensus 150 ~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~-----------------~ 212 (428)
T PF13347_consen 150 MIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK-----------------I 212 (428)
T ss_pred HHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccc-----------------c
Confidence 88887666565544321 16888888777766666655554434310000000000 0
Q ss_pred CCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHH
Q 008158 258 PQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGI 337 (575)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (575)
+. .+ .++ +..+++ .+... .....
T Consensus 213 ~~------------------------------~~-------------------~~~----~~~~nr-~~~~l---~~~~~ 235 (428)
T PF13347_consen 213 SL------------------------------RD-------------------SLR----SLFRNR-PFRIL---LLAFF 235 (428)
T ss_pred cc------------------------------cc-------------------chh----hhcccc-hHHHH---HHHHH
Confidence 00 00 000 000011 11111 11111
Q ss_pred HHHHhhccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHH
Q 008158 338 ISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIF 417 (575)
Q Consensus 338 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~ 417 (575)
..+.......+.... +.+...+ ..-..+.+..+..+..++..++..+ +.+|+++| +.+.++..+
T Consensus 236 ~~~~~~~~~~~~~~y---~~~~vl~--~~~~~~~~~~~~~~~~~v~~~~~~~----l~~r~gk~-------~~~~~~~~~ 299 (428)
T PF13347_consen 236 LQWLAFALMNTFLPY---YFTYVLG--NEGLISIFMLIFFVASIVGSPLWGR----LSKRFGKK-------KVYIIGLLL 299 (428)
T ss_pred HHHhhhhhhhhHHHH---HHHHHhc--CchhhHHHHHHHHHHHHHHHHHHHH----HHHHccce-------eehhhhHHH
Confidence 111111111111111 1111111 0001122223344444555555433 47777665 347777777
Q ss_pred HHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCc-------hhHHHHHHHHHHH
Q 008158 418 SILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPD-------HMKSIANSLLFCS 490 (575)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~-------~~rg~~~g~~~~~ 490 (575)
.+++.+...+.. ..+.+...+..++.|++.+......++...|..+. +..|...|++++.
T Consensus 300 ~~~~~~~~~~~~-------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~ 366 (428)
T PF13347_consen 300 AALGFLLLFFLG-------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFF 366 (428)
T ss_pred HHHHHHHHHHHH-------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhh
Confidence 777777766552 13666777888889999999999999988888863 4579999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 008158 491 FGFASYLSSLLITIVHGVTA 510 (575)
Q Consensus 491 ~~lg~~l~~~l~~~i~~~~~ 510 (575)
..++..++..+.+.+++..+
T Consensus 367 ~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 367 IKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred hHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999887653
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=156.71 Aligned_cols=414 Identities=14% Similarity=0.097 Sum_probs=246.8
Q ss_pred HHHHHHHHHhhhhH---HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008158 24 GNETFERLATIGLL---ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLT 100 (575)
Q Consensus 24 ~~~~~~~~~~~~~~---~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~ 100 (575)
...|+-.+..+++. ..+-..+++++|.+.++.+|+.++......+..|+.+.+.||+ |.|++.+.|.++..+|.++
T Consensus 49 ~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~~l 127 (509)
T KOG2504|consen 49 FASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGLLL 127 (509)
T ss_pred HhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHHHH
Confidence 34444445545433 3567888899999999999999999999999999999999995 9999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHH-HHHHHhccCCccccccccccCCCCCCcccccchhhhhHH
Q 008158 101 VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGL-GLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 179 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 179 (575)
..++. +.+.+++.- ++.|+|.|..+..+...++.+|++ +|+.+.++
T Consensus 128 ssF~~--------------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-------kR~lA~Gi 174 (509)
T KOG2504|consen 128 SSFAT--------------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-------KRALATGI 174 (509)
T ss_pred HHHHh--------------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-------HHHHHHhh
Confidence 99987 455555554 567999999999999989977763 49999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccCCC
Q 008158 180 YYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQ 259 (575)
Q Consensus 180 ~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (575)
-..+..+|.++-|.+.-++.+.+|||+.+++-+.+.+-..+.....+|....+.+.+. .+. ++.....+.
T Consensus 175 a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~--~~~--------~~~~~~~~~ 244 (509)
T KOG2504|consen 175 AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE--KDL--------RNSAASVES 244 (509)
T ss_pred hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh--hhh--------ccccccccc
Confidence 9998899999988899999999999999988776665555555555543222222100 000 000000000
Q ss_pred CCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccc---------hhhHHHhHhhhhhhH
Q 008158 260 GQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLC---------SIQQVEEVKCLIKII 330 (575)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 330 (575)
... +...+.......+.+ ....+...... ....|+.. +.+..++++.+...+
T Consensus 245 ---~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~ 305 (509)
T KOG2504|consen 245 ---TPK-----PVELRISERDSGLKK-LSLSNLATLKR----------GPDKWRNSPLQAFLSMLDLSLLKDPKFLLLAL 305 (509)
T ss_pred ---ccc-----ccccccccCCCCCCc-ccccchhhhhh----------CCccccccchhhhhhhhhHHHHcCchHHHHHH
Confidence 000 000000000000000 00000000000 00001100 001111111111011
Q ss_pred HHHHHHHHHHHhhccccceeeeecccccccCCCcccc-CccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHH
Q 008158 331 PIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQI-PPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQ 409 (575)
Q Consensus 331 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~ 409 (575)
...+....+.......+. +.+ .. +++. ..+...++..+..+++-++..++ .|+-. .+...
T Consensus 306 ~~~~~~~g~~~p~~~l~~-------~~~-~~--g~~~~~aa~l~Siigi~~i~gRi~~G~l----aD~~~-----~~~~~ 366 (509)
T KOG2504|consen 306 SNLFAYLGFNVPFVYLPS-------YAK-SL--GLSSNDAAFLLSIIGVSDIIGRIILGLL----ADKPG-----IRALV 366 (509)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHh-hc--CCChhhhHHHHHHHHHhhhhhhhhhhhh----cCccc-----cchHH
Confidence 111111111111111111 111 11 1100 11112223333333333332222 44422 24556
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHH
Q 008158 410 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFC 489 (575)
Q Consensus 410 ~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~ 489 (575)
...++++..+++.++.... .+++.++...+++|++.+...........+..+.+.-+.+.|+..+
T Consensus 367 ~~~~~ll~~gl~~~~~p~~---------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~ 431 (509)
T KOG2504|consen 367 LFLLTLLIAGLARLFLPFA---------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLL 431 (509)
T ss_pred HHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHH
Confidence 6777777777777555544 3556667777888998888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008158 490 SFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 549 (575)
Q Consensus 490 ~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~ 549 (575)
...++..+++.+.+++.|.+ . .|+..|...++..+++.++.++..
T Consensus 432 ~~gi~~l~gpPiag~~~d~t-----g----------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 432 FQGIGALVGPPIAGLLYDIT-----G----------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HhHHHHHcCcccceeeeecc-----C----------CeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999887754 1 245677777888777766666554
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-13 Score=148.94 Aligned_cols=153 Identities=16% Similarity=0.069 Sum_probs=119.3
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008158 38 ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDV 117 (575)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (575)
....+.+++++|+|.++.+++.++.. ....+.+++|+++||+ |||+++.++.+++.+++++++++.+.. +
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~~-i------- 116 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQEV-I------- 116 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhccc-c-------
Confidence 45667889999999999999987743 3445677889999995 999999999999999999999863100 0
Q ss_pred CCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHH-Hhhhhh
Q 008158 118 AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILI-TQTVLV 196 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~-~~~v~~ 196 (575)
..+.+.+++.|++.|+|.+...+.....+.++|| ++ |+.+.++...+..+|+.+ +++..+
T Consensus 117 ------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~ 177 (591)
T PTZ00207 117 ------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLA 177 (591)
T ss_pred ------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1267889999999999999888888889999997 44 899999999999999975 555555
Q ss_pred hccccccchhHhHHHHHHHHHHHHH
Q 008158 197 YIQDSVSWVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 197 ~l~~~~gw~~~f~~~~~~~~i~~~~ 221 (575)
++. .+|+..|++.++..++..++
T Consensus 178 l~~--~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 178 FFS--DNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHH--HhHHHHHHHHHHHHHHHHHH
Confidence 554 35777777665554444333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-13 Score=136.68 Aligned_cols=345 Identities=11% Similarity=0.128 Sum_probs=228.6
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
|-.+.-+++..+--|... .-...+...+++++|+|.+++|.+++...+...+.++++.+++.| +|-++.+..++++..
T Consensus 11 ~~li~gIvlia~NLR~~i-tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAI-TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhh-hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHH
Confidence 444455555565566653 344567778899999999999999999999999999999999999 599999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
+|..+=... +...++.+-.+.|.|.+......++.+-+.||++ -+.
T Consensus 89 ~G~~iR~~~---------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~ 134 (395)
T COG2807 89 AGILIRSLG---------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGL 134 (395)
T ss_pred HHHHHHhcc---------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhh
Confidence 998886653 3456899999999999999999999999999964 599
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccccc-cchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhc
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRR 254 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (575)
.++.|....++|+.+++.+...+.++. |||....+=+...++++++++.-..+.. .+....
T Consensus 135 mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~---------------- 196 (395)
T COG2807 135 MTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ--AASIAT---------------- 196 (395)
T ss_pred HHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc--cccccc----------------
Confidence 999999999999999999888887766 7998887777777777777665322111 010000
Q ss_pred ccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHH
Q 008158 255 LTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWA 334 (575)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (575)
+. .+ ...-|+ +...+...+.+-.
T Consensus 197 ---~~---~~-------------------------------------------~~~vw~--------~~~aW~vtLfmGl 219 (395)
T COG2807 197 ---KL---VS-------------------------------------------VRKVWR--------SPLAWQVTLFMGL 219 (395)
T ss_pred ---cc---cc-------------------------------------------cccccc--------CchhHHHHHHHHh
Confidence 00 00 000111 1111111222334
Q ss_pred HHHHHHHhhccccceeeeecccccccCCCccccCccccccc---hhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHH
Q 008158 335 AGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVI---SMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRI 411 (575)
Q Consensus 335 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i 411 (575)
....+|+...+.+.....+. ++... .+..-.+ ..+...+.+|. +.+|.++ .+...
T Consensus 220 qS~~~Y~~~~WLP~ili~~G--~sa~~-------aG~llsl~~l~~~~~~ll~P~-------la~R~~n------~r~~~ 277 (395)
T COG2807 220 QSLLYYIVIGWLPAILIDRG--LSAAE-------AGSLLSLMQLAQLPTALLIPL-------LARRSKN------QRPLV 277 (395)
T ss_pred hHHHHHHHHHHHHHHHHHcC--CCHHH-------hhhHHHHHHHHHHHHHHHHHH-------HHHHhcc------cchHH
Confidence 45566777777666554332 11111 1111111 12222222332 2444322 22333
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCC-chhHHHHHHHHHHH
Q 008158 412 GIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFP-DHMKSIANSLLFCS 490 (575)
Q Consensus 412 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p-~~~rg~~~g~~~~~ 490 (575)
......+.++.+.+.+.. .+..+++ .+++|+|.+..+|....++.+..+ ++..+.-.|+.+..
T Consensus 278 ~~~~~~~l~G~~G~~~~P------------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~ 341 (395)
T COG2807 278 VLALLLMLVGLVGLLLAP------------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGV 341 (395)
T ss_pred HHHHHHHHHHHHHHHHhh------------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 444444444444443331 1112222 377899999999999998877665 56677788888889
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 008158 491 FGFASYLSSLLITIVHGVT 509 (575)
Q Consensus 491 ~~lg~~l~~~l~~~i~~~~ 509 (575)
+.+-..++|.+.|++.|.+
T Consensus 342 GYllAa~GP~l~G~lhDa~ 360 (395)
T COG2807 342 GYLLAAFGPWLFGFLHDAT 360 (395)
T ss_pred hHHHHhhhhhhHhHHHHhc
Confidence 9999999999999999976
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-14 Score=145.12 Aligned_cols=385 Identities=11% Similarity=0.050 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH--HH
Q 008158 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI--LG 97 (575)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~--~~ 97 (575)
+......++-.+++-...++++.++++..|+|.++.|.+.++..+...+.+|+.|.++||. |.||-++....... .+
T Consensus 10 ~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l~~ 88 (412)
T PF01306_consen 10 WWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLLFG 88 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHHHH
Confidence 3333344444444445678999999999999999999999999999999999999999995 97775544433322 22
Q ss_pred HHHH-HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 98 MLTV-TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 98 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
.+.. .+.+.+.. + +.++.++.|+..+.......+ +.|.+-++. .++.+.=
T Consensus 89 pff~~v~~pll~~----------------------n---~~lg~iig~i~l~~~f~~~~~-~~Ea~~er~---sr~~~fe 139 (412)
T PF01306_consen 89 PFFIYVFGPLLQS----------------------N---FWLGAIIGGIYLGLVFNAGVP-LSEAYAERV---SRRNGFE 139 (412)
T ss_dssp HHHHHTHHHHHHT----------------------T----HHHHHHTTTTTTTTTTTHHH-HHHHHHHHH---HHHHSS-
T ss_pred HHHHHHHHHHHHH----------------------H---HHHHHHHHHHHHHHHHcccch-HHHHHHHHH---HHHhcCC
Confidence 2222 11110000 1 233333434444443333333 224332211 1223333
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhccc
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLT 256 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (575)
++-......+|.+++..++|++.+ .+-+..||+.....++..++.+..++..+++.+..+
T Consensus 140 YG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~------------------- 199 (412)
T PF01306_consen 140 YGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD------------------- 199 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST-------------------
T ss_pred cchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc-------------------
Confidence 455556678999999999998876 456678887665555444444443332111000000
Q ss_pred CCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHH
Q 008158 257 LPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAG 336 (575)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (575)
.. +.++.+.......+....++++....+....
T Consensus 200 -------~~----------------------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~ 232 (412)
T PF01306_consen 200 -------AL----------------------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGV 232 (412)
T ss_dssp -------TS----------------------------------------SS------HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred -------cc----------------------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHH
Confidence 00 0000000000000001112223222222222
Q ss_pred HHHHHhhccccc-eeeeecccccccCCCccccCccccccchh---HhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHH
Q 008158 337 IISLTSISQQGT-FTVSQAMKMNRHLGPKFQIPPGTVGVISM---ITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIG 412 (575)
Q Consensus 337 ~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ 412 (575)
...+..+.|+.+ ++..+.. +.. .....++.++. +.-++...+ ...+.+|++ .++.+.
T Consensus 233 ~~~Y~vfdqqf~~y~~~~f~--~~~------~g~~~~G~l~s~~v~~E~~~m~~----~p~li~rig-------~k~~Ll 293 (412)
T PF01306_consen 233 AAIYDVFDQQFPIYFASFFQ--SAG------QGNQMYGYLWSVQVFLEALMMFF----SPWLINRIG-------AKNLLL 293 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTSS--SHH------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--ccc------cChhHHhHHHHHHHHHHHHHHHH----HHHHHHhcC-------hHhHHH
Confidence 233333333322 2211100 000 11111222222 222222221 222366654 445566
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHH-HHHH
Q 008158 413 IGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL-FCSF 491 (575)
Q Consensus 413 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~-~~~~ 491 (575)
++..++.+=.+.++.. .+++.+++.-.+.++-..+......-|+.+.+|++..++...+. +...
T Consensus 294 lag~i~~iRi~~~~~~---------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~ 358 (412)
T PF01306_consen 294 LAGVIMAIRIIGSGFA---------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAK 358 (412)
T ss_dssp HHHHHHHHHHHHHHT-----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHhhh---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence 6666666555555543 46667777788999999999999999999999999999999985 5888
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008158 492 GFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 551 (575)
Q Consensus 492 ~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~ 551 (575)
++|..+.+.+.|.+.|.. |++..|++++.+.++..++..+..++
T Consensus 359 ~~~~~i~s~~~G~lyd~~----------------G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 359 QIGIIILSPLAGYLYDRI----------------GFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHhhhHHhhHhhc----------------CcHHHHHHHHHHHHHHHHHheeeecC
Confidence 999999999999999865 66778999898888777776666443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-13 Score=146.26 Aligned_cols=171 Identities=10% Similarity=0.137 Sum_probs=119.7
Q ss_pred HHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchHHHH-HHHHHHHHHHHHHHH
Q 008158 28 FERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFKTIT-FASIAAILGMLTVTL 103 (575)
Q Consensus 28 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~~~-~~~~l~~~~~~~~~~ 103 (575)
...+.+..+..+++.|+.+.+|+++..+|.+..+.-+...+.-|+.|+++||. +||||..+ .+.+.+.++.+++..
T Consensus 20 ~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~ 99 (460)
T PRK11462 20 ASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYS 99 (460)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHh
Confidence 33444445567899999999999999999999999999999999999999973 58876554 555666666655543
Q ss_pred HhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHH
Q 008158 104 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 183 (575)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (575)
. |.. +.......+.+.-++..++..+......++.+|..++.+ +|++..++...+
T Consensus 100 ~---p~~-----------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~ 154 (460)
T PRK11462 100 T---PDL-----------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVL 154 (460)
T ss_pred C---CCC-----------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHH
Confidence 2 210 001124455666666788888888888899999987543 399999999999
Q ss_pred HHHHHHHHhhhhhhcccc-------ccchhHhHHHHHHHHHHHHHHH
Q 008158 184 FTVVILITQTVLVYIQDS-------VSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 184 ~~ig~~~~~~v~~~l~~~-------~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
.++|..+++.+...+.+. .+|+....+.+++.++...+.+
T Consensus 155 ~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 155 ATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999988887665433222 3566655555554444444433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=136.01 Aligned_cols=163 Identities=11% Similarity=0.043 Sum_probs=124.8
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 008158 26 ETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTA 105 (575)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~ 105 (575)
.+++..........+.+-++...+.+..+...++.....+..+++-.+|.++|+ +|||+.+........+..++.+.+.
T Consensus 86 gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~sp 164 (528)
T KOG0253|consen 86 GWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGASP 164 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCCC
Confidence 333434434445556666777788999999999999999999999999999999 5999999877777666666666544
Q ss_pred hcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHH
Q 008158 106 WLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFT 185 (575)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (575)
++.++.+.|.+.|+|.|+ .|...++-.|..|..+ |....-.. ....
T Consensus 165 --------------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~wa 210 (528)
T KOG0253|consen 165 --------------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWA 210 (528)
T ss_pred --------------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHH
Confidence 677899999999999999 8888999999998766 67666665 6678
Q ss_pred HHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 186 VVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 186 ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
+|.++...+.=......||||..........+.....+
T Consensus 211 ig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~ 248 (528)
T KOG0253|consen 211 IGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLV 248 (528)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHh
Confidence 88888877765556778999887766654444444433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.3e-12 Score=133.48 Aligned_cols=369 Identities=11% Similarity=0.082 Sum_probs=219.9
Q ss_pred CCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchH-HHHH
Q 008158 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFK-TITF 89 (575)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~-~~~~ 89 (575)
-.+|+-.---...+...+.+-.+..++..|.++..|++...+|.+..+.=+..++.-|+.|.+.||. +|||| -++.
T Consensus 9 Ls~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~ 88 (467)
T COG2211 9 LSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLW 88 (467)
T ss_pred ccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHH
Confidence 3344333323334444455556778899999999999999999999999999999999999999975 47665 5555
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccc
Q 008158 90 ASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 169 (575)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 169 (575)
+.+.+++...++..+.+... .......++.-.+.+++...+.....++.+++.++.+
T Consensus 89 g~ip~~i~~~l~F~~p~~~~--------------------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--- 145 (467)
T COG2211 89 GAIPFAIVAVLLFITPDFSM--------------------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--- 145 (467)
T ss_pred HhHHHHHHHHHHHcCCCccc--------------------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH---
Confidence 66777777777766542110 1144556677788899999999889999999987643
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhhhhhhccc-------cccchhHhHHHHHHHHHHHHHHHhccceE-EeeCCCCCcchh
Q 008158 170 VKGINSFFNWYYTTFTVVILITQTVLVYIQD-------SVSWVIGFGIPTVLMIGAIILFLVGKKLY-VLVEPEGSIFSG 241 (575)
Q Consensus 170 ~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~-------~~gw~~~f~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~ 241 (575)
+|.+..++-..+.++|..+...+.+.+.. ..||+..-.+-+++..+.++.+++..+++ .++.+.++...
T Consensus 146 --ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~- 222 (467)
T COG2211 146 --ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVK- 222 (467)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccc-
Confidence 39999999999999997776655544432 34676665555555554554444433221 11111110000
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHH
Q 008158 242 IGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVE 321 (575)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (575)
..+.+.-.. ...
T Consensus 223 ---------------------------------------------~~~~~~~~~-----------------------~~~ 234 (467)
T COG2211 223 ---------------------------------------------LKLKDSFLL-----------------------IFK 234 (467)
T ss_pred ---------------------------------------------ccHHHHHHH-----------------------HHc
Confidence 000000000 000
Q ss_pred hHhhhhhhHHHHHHHHHHHHhhccccceeeeeccc-ccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhc
Q 008158 322 EVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMK-MNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITK 400 (575)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~ 400 (575)
+ |.+...+... .+.+.......+...++..+ ++..- ..+...........++..++ ..++.+|++|
T Consensus 235 N-rp~~~~l~~~---l~~~~~~~i~~s~~~yy~~y~lg~~~-----l~~~~~~~~~~~~~l~~~~~----~p~L~~~~gk 301 (467)
T COG2211 235 N-RPLLLLLLMN---LLLFIAFNIRGSIMVYYVTYVLGDPE-----LFAYLLLLASGAGLLIGLIL----WPRLVKKFGK 301 (467)
T ss_pred c-chHHHHHHHH---HHHHHHHHHHhhhhheeEEEEcCChH-----HHHHHHHHHHHHHHHHHHHh----HHHHHHHhch
Confidence 1 1111111111 22222222222222111111 11100 11111111222222222232 2333556544
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccC-----
Q 008158 401 HEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF----- 475 (575)
Q Consensus 401 r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~----- 475 (575)
| +...+|.++..++.+...+.. ..+.+..++..++.++|.+...+..++.+.|..
T Consensus 302 k-------~~~~~~~~~~~i~~~~~~f~~-------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~ 361 (467)
T COG2211 302 K-------KLFLIGLLLLAVGYLLLYFTP-------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEW 361 (467)
T ss_pred H-------HHHHHHHHHHHHHHHHHHhhc-------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHH
Confidence 4 567788777777777766552 235556666668888999999999998887776
Q ss_pred --CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008158 476 --PDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 509 (575)
Q Consensus 476 --p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~ 509 (575)
..+..|...|.+.+..=+|..++..+.++++...
T Consensus 362 ~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 362 KTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred HhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456788889888999999999999999999875
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.3e-12 Score=133.09 Aligned_cols=175 Identities=14% Similarity=0.132 Sum_probs=130.8
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
+..+..+...+.....++....+++.|+++++|+++.+.+.+.+...++..++.+++|+++||+ |||+.+..+.....+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~ 294 (393)
T PRK15011 216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVC 294 (393)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3334444444444445455566889999999999999999988887788888899999999995 999988776665554
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
........+ +...+++.+++.+++.|...+..+.+..|.+|+ + |+++
T Consensus 295 ~~~~~~~~~--------------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~ 341 (393)
T PRK15011 295 FYAGMLMAH--------------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSA 341 (393)
T ss_pred HHHHHHHHh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchH
Confidence 433333322 344566677777777666666666777888873 3 7899
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhc
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
.++++...++|..++|.++|++.+..||+..|++..++.++++++.+..
T Consensus 342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999988999999999999999998899999998777777766665543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-13 Score=127.75 Aligned_cols=377 Identities=12% Similarity=0.145 Sum_probs=214.2
Q ss_pred hhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 008158 35 GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPK 114 (575)
Q Consensus 35 ~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (575)
.-..-+..+.+.+.+++.++..++-++|..-..+.+.++|++.||.+|-|..-.+-+....+|.++.+....
T Consensus 61 d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-------- 132 (459)
T KOG4686|consen 61 DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-------- 132 (459)
T ss_pred CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH--------
Confidence 344566778888888888899999999999999999999999999999776444444444566666654221
Q ss_pred CCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhh
Q 008158 115 CDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTV 194 (575)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v 194 (575)
....+.+..+|++.|+|.-....+-+.+...+|+.+| .+..+++......+|+..--.+
T Consensus 133 ---------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~l 191 (459)
T KOG4686|consen 133 ---------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLL 191 (459)
T ss_pred ---------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeee
Confidence 1278889999999999988888888999999999988 9999999998888888766666
Q ss_pred hhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCccccCCCCc
Q 008158 195 LVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPK 274 (575)
Q Consensus 195 ~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (575)
-+++.+..+ .++-+..-..+++.+.+-.+. ....+..+......+ + +.++.+..+..+
T Consensus 192 m~~ly~~~~---~~~~~~ghT~LG~~l~~~~~t--------------c~~slical~lg~~D--~---rAerilh~e~g~ 249 (459)
T KOG4686|consen 192 MPFLYDTMG---RMFPGVGHTLLGLWLCFEVKT--------------CKQSLICALSLGLSD--D---RAERILHLEEGF 249 (459)
T ss_pred cHHHHHHHH---HhcccchHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhh--h---HHHHHHhhhcCc
Confidence 666655432 111011112222222111000 000000110000000 0 000000000000
Q ss_pred ccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHH---HHHHHHhhccccceee
Q 008158 275 LFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAA---GIISLTSISQQGTFTV 351 (575)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~t~~~ 351 (575)
.|.. .+.++++.. ..++|.. ...++.....+.+
T Consensus 250 ------------------------------~Ge~---------pkLtdv~~f--~ppfw~~~iicv~yyva~fPFi~--- 285 (459)
T KOG4686|consen 250 ------------------------------LGEE---------PKLTDVNTF--YPPFWVLVIICVLYYVAWFPFIT--- 285 (459)
T ss_pred ------------------------------ccCC---------ccccccccc--CccHHHHHHHHHHHHHHHHHHhh---
Confidence 0000 000111111 1111211 1222222111111
Q ss_pred eecccccccCCCccccCccccccchhHh---hHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 008158 352 SQAMKMNRHLGPKFQIPPGTVGVISMIT---IGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLV 428 (575)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~ 428 (575)
.-.......+| .++...++++... ..+..|+.+.+ .||.+++ .+.+..+.++...+-..+.+
T Consensus 286 lg~~fF~~rfG----lS~~~a~~i~s~vy~Isav~spvfg~i----~Dk~G~n------~~wv~~a~~~tl~~H~~l~F- 350 (459)
T KOG4686|consen 286 LGPMFFQKRFG----LSAVSAGNILSTVYGISAVLSPVFGAI----SDKYGFN------LWWVASACILTLLGHSGLFF- 350 (459)
T ss_pred hhHHHHHHhhC----CChhhccchhhhhhhhhhhhhhhHHHh----Hhhhcce------ehhHHHHHHHHHHHhhhHHh-
Confidence 11111223332 3333333333322 33444443333 7776544 24444444444444333322
Q ss_pred HhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008158 429 ERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGV 508 (575)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~ 508 (575)
+.+....+++++|++..+.....+..+...+|.+.-|++.|..++..++|-.+.+.+.+.+.|.
T Consensus 351 ----------------t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 351 ----------------TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred ----------------hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 2222345778899999999999999999999999999999999999999999999999988763
Q ss_pred cccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008158 509 TARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 549 (575)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~ 549 (575)
- +++ ..++..|...+.+++....+.+...
T Consensus 415 ~-----g~y-------~~le~ffl~~~~~aL~svgil~~~N 443 (459)
T KOG4686|consen 415 D-----GSY-------DNLEAFFLIIGLMALTSVGILFYLN 443 (459)
T ss_pred C-----Cch-------hhHHHHHHHHHHHHHHHHHHHhhee
Confidence 1 111 1345566666777777655555543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-12 Score=136.20 Aligned_cols=175 Identities=16% Similarity=0.064 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
++......++....+++...++|.|+++++|+|..++++......++..++.+++|+++||+ |||+.+.....+..++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~~ 338 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALIIF 338 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHH
Confidence 44455556666666677888999999999999999999999999999999999999999995 99987766555444433
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
....+... .+.....+.+++.|++..+..........|.+|+++ |+++.+
T Consensus 339 ~~~~~~~~------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~g 388 (467)
T PRK09556 339 TLGVYQHA------------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANG 388 (467)
T ss_pred HHHHHHhc------------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHH
Confidence 22222210 033445566677776543333333356679999877 999999
Q ss_pred HHHHHHHH-HHHHHhhhhhhccc------------cccchhHhHHHHHHHHHHHHHHHh
Q 008158 179 WYYTTFTV-VILITQTVLVYIQD------------SVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 179 ~~~~~~~i-g~~~~~~v~~~l~~------------~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
+.+...++ |..++|.+.|++.+ ..+|+..|++.+++.+++.+..++
T Consensus 389 i~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 389 IKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 99999886 77999999999988 578999998877777766655543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=133.81 Aligned_cols=176 Identities=15% Similarity=0.111 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008158 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGML 99 (575)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~ 99 (575)
...+...++....+|++..++|.|+++.+|++..+.+++.....++..++.+++|+++||+ |||+++..+.++..++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~ 331 (490)
T PRK10642 253 LTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAI 331 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence 3333444556677888999999999999999988888888888899999999999999995 999998887765544433
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHH
Q 008158 100 TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 179 (575)
.+..... ..+...+++++++.|++.++..+....+..|.+|++. |++++++
T Consensus 332 ~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~ 382 (490)
T PRK10642 332 PAFILIN-----------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAA 382 (490)
T ss_pred HHHHHHh-----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHH
Confidence 3222110 0134556778888888776666677788889999887 9999998
Q ss_pred HHHHHHHHHHHHhhhhhhccccc-cchhHhHHHHHHHHHHHHHHHhc
Q 008158 180 YYTTFTVVILITQTVLVYIQDSV-SWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 180 ~~~~~~ig~~~~~~v~~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
.+....+++.++|.+.+++.+.. +|+..+++..+..+++++..++.
T Consensus 383 ~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 383 AFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 66666677788999999887654 46766665555555555444443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-11 Score=126.01 Aligned_cols=172 Identities=21% Similarity=0.257 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchH-HHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFK-TITFASIAAILG 97 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~-~~~~~~~l~~~~ 97 (575)
.+......++..........+++.++.+.+|.++.+.+.+.....++..++.++.|++.||+ |||+ .+..+..+..++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 255 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence 34444455666666667777888888888899999999999999999999999999999995 9999 999999999888
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhh
Q 008158 98 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 177 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 177 (575)
.+.....+ +...+.+..++.|++.+...+....+..|..|+++ |++.+
T Consensus 256 ~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 303 (352)
T cd06174 256 LLLLALAP--------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTAS 303 (352)
T ss_pred HHHHHHhc--------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHH
Confidence 88887754 45667888999999999999999999999999877 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 178 NWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 178 ~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
+.++...++|..+++.+.+++.+..+|+..|++.+++.+++.+..+
T Consensus 304 ~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 304 GLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999889999999988887776666543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-09 Score=110.07 Aligned_cols=375 Identities=12% Similarity=0.081 Sum_probs=209.7
Q ss_pred hhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc-----chHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008158 45 LKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIG-----RFKTI-TFASIAAILGMLTVTLTAWLPQLHPPKCDVA 118 (575)
Q Consensus 45 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G-----rr~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (575)
-.|++++..-.+.+++...+...+ .+..|+.+|++ + ||..+ ..|..++..+..+.+++..+=. . ..
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap~-R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~-~~--- 78 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAPL-RVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--E-SG--- 78 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHH-HHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--c-cc---
Confidence 457899888899999888887764 67779999996 7 77544 4455556666666665432110 0 00
Q ss_pred CCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhc
Q 008158 119 KPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI 198 (575)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l 198 (575)
.+...+.........+.-.+.|+|.+.......++.+|..|+++ |++..++.+.+.-+|.+++..+.+.+
T Consensus 79 ----~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~l 148 (403)
T PF03209_consen 79 ----QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRL 148 (403)
T ss_pred ----cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111123334555567799999999999999999999988 99999999999999999999999988
Q ss_pred cccccchh---Hh-HHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCccccCCCCc
Q 008158 199 QDSVSWVI---GF-GIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPK 274 (575)
Q Consensus 199 ~~~~gw~~---~f-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (575)
.+.++-.- ++ ....+...+.++..+=.+++.++..+.++ ++
T Consensus 149 L~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~--------------------------~~--------- 193 (403)
T PF03209_consen 149 LDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAE--------------------------RP--------- 193 (403)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCC--------------------------CC---------
Confidence 77665221 11 22222233333333322222211110000 00
Q ss_pred ccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhhccccceeeeec
Q 008158 275 LFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQA 354 (575)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 354 (575)
+.++.+. |+.... ..+.+++... +++....++. |=. +..+
T Consensus 194 -----------~~~f~~a-------------------~~~~~~--~~~a~~f~~f--l~l~t~a~~~---QD~---iLEP 233 (403)
T PF03209_consen 194 -----------RPPFREA-------------------WRQVWA--SPQARRFFVF--LFLGTLAFFM---QDV---ILEP 233 (403)
T ss_pred -----------CccHHHH-------------------HHHHHh--CCChhHHHHH--HHHHHHHHHh---hHH---HcCC
Confidence 0000000 000000 0011111111 1111111111 100 0000
Q ss_pred ccccccCCCccccCcccc---ccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhh
Q 008158 355 MKMNRHLGPKFQIPPGTV---GVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERG 431 (575)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~---~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~ 431 (575)
+-...+ .++.+.. +.+...+.++...+..+. .. |+ .++.+...+|.....+++........
T Consensus 234 -ygg~Vf----gmsv~eTT~Lta~~~~G~L~G~~~~g~~----l~----~~--~~~~~~a~~G~~~~~~~f~lii~a~~- 297 (403)
T PF03209_consen 234 -YGGEVF----GMSVGETTRLTAFWGGGTLLGMLLAGFL----LS----RR--LGKKRTAALGCLLGALAFALIILAGP- 297 (403)
T ss_pred -chhHHc----CCCHHHHHHHHHHHHHHHHHHHHHHHHH----hc----CC--CCchHHHHHHHHHHHHHHHHHHHHHh-
Confidence 111112 1333332 333444444443332222 22 11 23334455666666666655544421
Q ss_pred hhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008158 432 RRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTAR 511 (575)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~ 511 (575)
..+.+.+-+..+++|++.+.......+..++..+++..|+.+|.+...+.++..++..+.+.+.|....
T Consensus 298 -----------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~ 366 (403)
T PF03209_consen 298 -----------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA 366 (403)
T ss_pred -----------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235667788889999999999999999999999999999999999999999999999999998887421
Q ss_pred CCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHH
Q 008158 512 HGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYF 545 (575)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~ 545 (575)
+..++ ...+|..+|.+=+++.++++.+.
T Consensus 367 -----~~~~~-~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 367 -----LFGNS-PALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred -----hccCC-cchHHHHHHHHHHHHHHHHHHHH
Confidence 11100 11255666665555555554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-09 Score=116.46 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCc
Q 008158 445 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDA 524 (575)
Q Consensus 445 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~ 524 (575)
+.+.+.+..++.|+..+...+.+-++..+..|++..+...|++.+.+..++++||.+.+.+.+.++
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-------------- 444 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-------------- 444 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 444555556788999999999999999999999999999999999999999999999999998762
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 008158 525 GRLDYFYFLIAGLGGLNIVYFLY 547 (575)
Q Consensus 525 ~~~~~~f~~~a~i~~v~~i~~~~ 547 (575)
...+.+....++.++++++.+.
T Consensus 445 -~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 445 -SQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred -CchhHHHHHHHHHHHHHHHHhh
Confidence 1234556666666666555543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=127.66 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=129.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 008158 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTL 103 (575)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~ 103 (575)
...++...........++.|+.+++|.++.+.+++.....+...++.+++|++.||+ |||+++..+.++..+.......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~ 284 (375)
T TIGR00899 206 VACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAA 284 (375)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHH
Confidence 333443333444556788899999999999999988887777788889999999995 9999988877665555444443
Q ss_pred HhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHH
Q 008158 104 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 183 (575)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (575)
.+ +.+.+++.+++.|++.+...+....+..|..|+ + ++++.++++..
T Consensus 285 ~~--------------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~ 331 (375)
T TIGR00899 285 DN--------------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNT 331 (375)
T ss_pred HH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHH
Confidence 32 445566777888888888778778888888764 3 56999999999
Q ss_pred HHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 184 FTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 184 ~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
.++|..++|.++|++.+..||+..|++.+++.+++.++.+.
T Consensus 332 ~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 332 GRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 99999999999999999889999999888777776666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=128.41 Aligned_cols=163 Identities=12% Similarity=0.123 Sum_probs=128.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 008158 25 NETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLT 104 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~ 104 (575)
..++............+.|. +++|.++.+.+.+.+.+.++..++.++.|+++||+ |||+.+..+..+..++.+...+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~ 290 (377)
T TIGR00890 213 SFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAAMLFI 290 (377)
T ss_pred HHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHc
Confidence 33333333333445555664 57899999999999999999999999999999995 99999999888888887776654
Q ss_pred hhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHH
Q 008158 105 AWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 184 (575)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (575)
+. . +...++...++.|++.+...+..+.+..|.+|+++ |++.+++++...
T Consensus 291 ~~-----------------------~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~ 340 (377)
T TIGR00890 291 PM-----------------------L-NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAK 340 (377)
T ss_pred cc-----------------------c-hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHH
Confidence 31 0 12234455677888888888888889999999877 999999999999
Q ss_pred HHHHHHHhhhhhhccccccchhHhHHHHHHHHHHH
Q 008158 185 TVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAI 219 (575)
Q Consensus 185 ~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~ 219 (575)
++|..++|.+.|++.+..||++.|.+.+++.++++
T Consensus 341 ~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 341 AVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 99999999999999998999999988776655443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=128.88 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=130.8
Q ss_pred HHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcC
Q 008158 29 ERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLP 108 (575)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~ 108 (575)
..++++.+..+++.|+.+ .|+ .+.+.....+.++..++.++.|++.||+ |||+.+..+..+..++.+.....+
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--- 300 (399)
T PRK05122 228 ASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP--- 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc---
Confidence 344555566778888764 465 3456667788888889999999999995 999999888888888777666543
Q ss_pred CCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHH
Q 008158 109 QLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVI 188 (575)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 188 (575)
+.+.+++.+++.|++.+...+.......|.+|+++ |++.+++++...++|.
T Consensus 301 -----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~ 351 (399)
T PRK05122 301 -----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSL 351 (399)
T ss_pred -----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHH
Confidence 44556778889999999888887778888888766 9999999999999999
Q ss_pred HHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccce
Q 008158 189 LITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKL 228 (575)
Q Consensus 189 ~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~ 228 (575)
.+++.+.|++.+..||+..|++.+++.+++++..+..+++
T Consensus 352 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 352 GITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999998999999998887777776665554443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=125.43 Aligned_cols=179 Identities=15% Similarity=0.075 Sum_probs=143.8
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc-cchHH-HHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI-GRFKT-ITFASIAA 94 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-Grr~~-~~~~~~l~ 94 (575)
|.++++...+.+--+.-|++.-+.|+|+.|..|+|..++++..+.|-.+...+++++||++||++ |||.. -++++++.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 55677778888888888999999999999999999999999999999999999999999999998 77754 34444444
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchh
Q 008158 95 ILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 174 (575)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 174 (575)
.++.+....+. ..+..+..+..++.|+-.-+.+-.+.....|..|++. -|
T Consensus 332 ~~~~~~~w~~~------------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aG 381 (448)
T COG2271 332 TASLVLYWLAP------------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AG 381 (448)
T ss_pred HHHHHHHHcCC------------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------cc
Confidence 44444444432 1145666777778888877777777777889999877 79
Q ss_pred hhhHHHHHHHHH-HHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhc
Q 008158 175 SFFNWYYTTFTV-VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 175 ~~~~~~~~~~~i-g~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
.+.+....+..+ |..++....|++.|.+||...|++..+..+++.++++..
T Consensus 382 tA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 382 TATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred chhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999988 999999999999998999999988776666666555443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=127.83 Aligned_cols=170 Identities=15% Similarity=0.110 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
.+.+....++.....+++..++|.|+++.+|+|..+.+.+.+.+.++..++.+++|+++||+ |||+++.....+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~ 285 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLM 285 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHH
Confidence 33333444555566677889999999999999999999999999999999999999999995 99999887777666655
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
.+..... +...+.+..++.|++.+...+...++..|..|++ ++...+
T Consensus 286 ~~~~~~~--------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g 332 (394)
T PRK03699 286 YLFVNTD--------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVN 332 (394)
T ss_pred HHHHHcC--------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHH
Confidence 5544332 3334555667788887777787777777766532 456678
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHH
Q 008158 179 WYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~ 222 (575)
+...+.++|..++|.+.|++.+..||+..|++.+++.++++++.
T Consensus 333 ~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 333 FILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 88888899999999999999998999999987776666655443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-12 Score=111.12 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHH
Q 008158 59 LNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVM 138 (575)
Q Consensus 59 ~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (575)
...+.++..++.++.|+++||+ |||+.+..+..+..++.+...... +.+.+.+
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~ 56 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS--------------------------NITVLII 56 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc--------------------------cHHHHHH
Confidence 3455677888999999999995 999999999888888887776653 5667888
Q ss_pred HHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHH
Q 008158 139 GLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGA 218 (575)
Q Consensus 139 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~ 218 (575)
.+++.|++.+...+....+..|.+|+++ |++..++.+...++|..++|.+.+++.+..+|++.|++.+...++.
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999877 9999999999999999999999999998889999998877666655
Q ss_pred HHHHHh
Q 008158 219 IILFLV 224 (575)
Q Consensus 219 ~~~~~~ 224 (575)
.+..+.
T Consensus 131 ~~~~~~ 136 (141)
T TIGR00880 131 FILLAF 136 (141)
T ss_pred HHHHhh
Confidence 555443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=127.29 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=131.2
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhh-hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccc-hHHH
Q 008158 10 QKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLK-EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGR-FKTI 87 (575)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr-r~~~ 87 (575)
+..+.+||.+++.....++..+.++.+.+..-+|+++ +.+-+.+..|+++++..++..+..+..|+-..|. |+ |+.+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence 3467899999999999999999988888888899886 5788899999999999999999999999999995 75 7788
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCc
Q 008158 88 TFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 167 (575)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 167 (575)
+++.++.++|.++.......|+ ...++++++|++.|+|.+... ..-+|++|-...++
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~---------------------~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~d- 162 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPN---------------------GVKYLMLVARILTGVGVGNFA-VLRAYIADASTVED- 162 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---------------------chHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccc-
Confidence 8899999999998843332331 267889999999999987754 45888888666555
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 008158 168 EGVKGINSFFNWYYTTFTVVILITQTVLVY 197 (575)
Q Consensus 168 ~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~ 197 (575)
|.++++....+..+|..+||.+...
T Consensus 163 -----R~rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 163 -----RPRAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred -----hHHHHHHhhhHHHHHHHHhHHHHHH
Confidence 9999999888888888888876543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-11 Score=135.31 Aligned_cols=133 Identities=8% Similarity=0.050 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHH
Q 008158 58 ILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLV 137 (575)
Q Consensus 58 i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (575)
...+..++..++.+++|+++|| +|||++++.+.++.+++.++.+++. +...++
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~--------------------------s~~~ll 652 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN--------------------------SESAMI 652 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc--------------------------cHHHHH
Confidence 3556667888999999999999 5999999999999998888877754 334466
Q ss_pred HHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHH
Q 008158 138 MGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 217 (575)
Q Consensus 138 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i 217 (575)
+.+++.+++.++..+...++++|++|.+. |++++++.+....+|+++||.+++++.+. +...+|++.+++.++
T Consensus 653 ~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll 725 (742)
T TIGR01299 653 ALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALAC 725 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 67778888777788889999999999877 99999999999999999999999988663 456677777666666
Q ss_pred HHHHHHh
Q 008158 218 AIILFLV 224 (575)
Q Consensus 218 ~~~~~~~ 224 (575)
+.++.++
T Consensus 726 ~~ll~~~ 732 (742)
T TIGR01299 726 GGLLALK 732 (742)
T ss_pred HHHHHHh
Confidence 5555444
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-10 Score=117.34 Aligned_cols=163 Identities=13% Similarity=0.056 Sum_probs=119.1
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008158 38 ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDV 117 (575)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (575)
..+..|..+.++ +...+-|...+|.+......+++-|+.||+ |=|.+.+++..+-.+|..+=.++.. |.+.+
T Consensus 65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~-p~v~~----- 136 (480)
T KOG2563|consen 65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSL-PFVPP----- 136 (480)
T ss_pred hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccC-ccccc-----
Confidence 445567777777 777888999999999999999999999995 9999999999999999998777652 32211
Q ss_pred CCCCCCccCCCcchhh--HHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhh
Q 008158 118 AKPPFGQCKSANSMQL--GVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL 195 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~--~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~ 195 (575)
.. .+.+.+-.+.+.+.-.+.....-..+-+|++++ |..+...-.++..+|..+|..+.
T Consensus 137 --------------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 137 --------------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred --------------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhcc
Confidence 22 366788888888887777776677777899988 99999888888888888887776
Q ss_pred hhccc------cccchh--HhHHHHHHHHHHHHHHHhccce
Q 008158 196 VYIQD------SVSWVI--GFGIPTVLMIGAIILFLVGKKL 228 (575)
Q Consensus 196 ~~l~~------~~gw~~--~f~~~~~~~~i~~~~~~~~~~~ 228 (575)
..+.. ..+|.. .|+....+..+.+++..+.+++
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~ 237 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTK 237 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66543 234654 3443333444444444444444
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.3e-11 Score=127.83 Aligned_cols=176 Identities=10% Similarity=-0.034 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhCCC--------hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008158 21 YILGNETFERLATIGLLANFMVYLLKEYHMN--------QTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~--------~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 92 (575)
..++..++..........+++.|+.+ .|.+ ..+.+.+.++..+...++.++.|+++||+ |||+++..+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~ 289 (418)
T TIGR00889 212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLV 289 (418)
T ss_pred eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 33344444444434455666777764 4433 36678889999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 93 AAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
+..++..+...... +..+...+++.+++.|++.+...+....++.|.+|+++
T Consensus 290 ~~~v~~~l~~~~~~----------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------ 341 (418)
T TIGR00889 290 AWALRFGFFAYGDP----------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------ 341 (418)
T ss_pred HHHHHHHHHHHcCc----------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 88888766665321 01134556778899999999888888999999999877
Q ss_pred hhhhhHHHH-HHHHHHHHHHhhhhhhcccc------ccchhHhHHHHHHHHHHHHHHHhcc
Q 008158 173 INSFFNWYY-TTFTVVILITQTVLVYIQDS------VSWVIGFGIPTVLMIGAIILFLVGK 226 (575)
Q Consensus 173 r~~~~~~~~-~~~~ig~~~~~~v~~~l~~~------~gw~~~f~~~~~~~~i~~~~~~~~~ 226 (575)
|++.+++.+ ....+|..+||.++|++.+. +||+..|.+.+++.+++.+++++..
T Consensus 342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~ 402 (418)
T TIGR00889 342 RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF 402 (418)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999997 56789999999999999876 4699999887776666655554433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=122.11 Aligned_cols=170 Identities=9% Similarity=-0.046 Sum_probs=129.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 008158 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTL 103 (575)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~ 103 (575)
...++.....++...++++|+.+.+|+|..+.+++...+.++..++.++.|+++||+ |||+.. .+..+..++......
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~~l~~ 289 (390)
T PRK03545 212 LLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLLLLLP 289 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHHHHHH
Confidence 334444455556667888899888999999999999999999999999999999995 988654 444444444333322
Q ss_pred HhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHH
Q 008158 104 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 183 (575)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (575)
..+ +...+++..++.|++.+...+...+.+.+..| ++ |++++++++..
T Consensus 290 ~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~ 337 (390)
T PRK03545 290 AAN-------------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGI 337 (390)
T ss_pred Hhc-------------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHH
Confidence 111 44556777788899888777777777777765 34 89999999999
Q ss_pred HHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccc
Q 008158 184 FTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 227 (575)
Q Consensus 184 ~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~ 227 (575)
.++|..+||.++|++.+..|++..|+..+++.+++++..+...+
T Consensus 338 ~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 338 FNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999888877777776655443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=125.06 Aligned_cols=174 Identities=14% Similarity=0.059 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 008158 23 LGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVT 102 (575)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~ 102 (575)
....++....+|...++++.|+++.+|++......+.........++.++.|+++||+ |||+++..+.++..++.+...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~ 334 (438)
T PRK09952 256 IALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAFPFF 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHH
Confidence 3456666777888889999999999999987766666666777788889999999995 999999888776655544333
Q ss_pred HHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHH
Q 008158 103 LTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYT 182 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 182 (575)
.... . ......+++..++.+++.+...+..+++..|.+|.+. |+.+.++.+.
T Consensus 335 ~~~~-~---------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~~ 386 (438)
T PRK09952 335 MALE-A---------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGYQ 386 (438)
T ss_pred HHHH-c---------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHHH
Confidence 3210 0 0022333445566678888778888899999999876 8888888655
Q ss_pred H-HHHHHHHHhhhhhhccccc--cchhHhHHHHHHHHHHHHHHHhc
Q 008158 183 T-FTVVILITQTVLVYIQDSV--SWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 183 ~-~~ig~~~~~~v~~~l~~~~--gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
. ..+|+.++|.+.+++.+.. +|+..+.+.+++.+++.+..+..
T Consensus 387 ~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 387 VASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 4 4589999999999987643 48888877777767666665543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=124.02 Aligned_cols=162 Identities=12% Similarity=0.049 Sum_probs=126.1
Q ss_pred HHHhhhhHHHHHHHHhhhhCCChh---hHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 008158 30 RLATIGLLANFMVYLLKEYHMNQT---SAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAW 106 (575)
Q Consensus 30 ~~~~~~~~~~l~~yl~~~l~~~~~---~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~ 106 (575)
......+...++.|+.+..+.... ..+.+..+..++..++.+..|+++||+ |||+.+..+..+..++.+......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~- 309 (408)
T PRK09874 232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFVQ- 309 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHhc-
Confidence 334344556677787765442221 245566667778888899999999995 999999988887777766655543
Q ss_pred cCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHH
Q 008158 107 LPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 186 (575)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 186 (575)
+.+.+++.+++.|++.+...+...+.+.+..|+++ |++.+++++...++
T Consensus 310 -------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~ 358 (408)
T PRK09874 310 -------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDI 358 (408)
T ss_pred -------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHH
Confidence 44567788889999999999988888888888766 89999999999999
Q ss_pred HHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 187 VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 187 g~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
|..+||.++|++.+..||+..|++.+++.+++.++.+.
T Consensus 359 g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 359 GNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999899999999888777766665544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-10 Score=126.02 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=115.0
Q ss_pred hhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 008158 35 GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPK 114 (575)
Q Consensus 35 ~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (575)
....++|.|+++++|++..+.+.+.+...++..++.+++|+++||+ |||+++..+..+..++.+.......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4567899999989999999999999999999999999999999995 9999988877666655444332210
Q ss_pred CCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhh
Q 008158 115 CDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTV 194 (575)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v 194 (575)
.+.+.+.+..++.+....+..+..+.++.|.+|+++ |++.+++++...++|..+||.+
T Consensus 364 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l 421 (496)
T PRK03893 364 ----------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPIL 421 (496)
T ss_pred ----------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHH
Confidence 123333344444433333445667788899999877 9999999999999999999999
Q ss_pred hhhccccccchhHhHHHHH
Q 008158 195 LVYIQDSVSWVIGFGIPTV 213 (575)
Q Consensus 195 ~~~l~~~~gw~~~f~~~~~ 213 (575)
+|++.+.+||+..+...+.
T Consensus 422 ~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 422 GALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHhccCChHHHHHHHHH
Confidence 9999999999988765443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=123.92 Aligned_cols=166 Identities=8% Similarity=-0.027 Sum_probs=127.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 008158 25 NETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLT 104 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~ 104 (575)
..++.....+.+..+++.|+++ .|++..+.+.+...+.++..++.++.|+++||+ |||+.+..+.+...++.+.....
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~ 305 (406)
T PRK11551 228 SYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAAA 305 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445566677778888875 799999999999999999999999999999995 99999887766666665555443
Q ss_pred hhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHH
Q 008158 105 AWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 184 (575)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (575)
. +...+.+..++.|++.++..+...++..|.+|+++ |++..++++...
T Consensus 306 ~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~ 353 (406)
T PRK11551 306 P--------------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVG 353 (406)
T ss_pred C--------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhh
Confidence 2 33445566677788877778888899999999887 999999999999
Q ss_pred HHHHHHHhhhhhhccccc-cchhHhHHHHHHHHHHHHHHHh
Q 008158 185 TVVILITQTVLVYIQDSV-SWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 185 ~ig~~~~~~v~~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
.+|..++|.+.|++.+.. +|...++....+.+++.++.+.
T Consensus 354 ~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 354 RLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred hHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998754 4555666555555555544443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-11 Score=124.08 Aligned_cols=166 Identities=13% Similarity=-0.010 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
.+......++.....+....+++.|+++++|.+..+.+.+.....++..++.+++|+++||+ |||+.+..+..+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 299 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLA 299 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence 45555566666677777888899999999999999999999999999999999999999995 99998876555444333
Q ss_pred H-HH-HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 99 L-TV-TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 99 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
. .. .... ..+...+....++.|++.+...+...+++.|.+|+++ |+++
T Consensus 300 ~~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~ 349 (394)
T TIGR00883 300 VPLLMALLD------------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTG 349 (394)
T ss_pred HHHHHHHhc------------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeE
Confidence 2 22 1211 0134556667778888888888999999999999877 8888
Q ss_pred hHHH-HHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHH
Q 008158 177 FNWY-YTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLM 215 (575)
Q Consensus 177 ~~~~-~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~ 215 (575)
.+.. .....+|..++|.++|++.+..| |+..++..+.+.
T Consensus 350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 8874 45557899899999999998888 887766555433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=121.60 Aligned_cols=175 Identities=12% Similarity=0.101 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
.+.+.+..++...+++++..+++.|+.+ +|++..+.+...+.+.++..++.++.|++.||+ |||+.+..+..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 3444445555667777888999999986 899999999999999999999999999999994 99999988887777776
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
........ +...+ ...+.|++.+...+.......+.+++++ .|++.++
T Consensus 285 ~~~~~~~~-------------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g 332 (393)
T PRK09705 285 CGFIWLPL-------------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVA 332 (393)
T ss_pred HHHHHccc-------------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHH
Confidence 65443220 11112 2245688888888877777777775322 2899999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHHHHhccc
Q 008158 179 WYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGKK 227 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~ 227 (575)
+.+...+++..++|.+.|++.+..| |+..|.+.+++.+++++..+...+
T Consensus 333 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 333 FMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999776 788888776666655555444333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.5e-13 Score=143.63 Aligned_cols=189 Identities=15% Similarity=0.174 Sum_probs=3.0
Q ss_pred HHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008158 31 LATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQL 110 (575)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~ 110 (575)
...++.......-+++.++++.++.|++.+.+.++..+..++..++++|. .|-|.+-.|.+++.+|++++++-+ +
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPh----f 90 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPH----F 90 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccH----h
Confidence 66677777788889999999999999999999999999999999999994 777899999999999999988733 2
Q ss_pred CCCCCCC--CC-------CCCCcc-------------------CCCcchhhHHHHHHHHHHHHhccCCccccccccccCC
Q 008158 111 HPPKCDV--AK-------PPFGQC-------------------KSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 162 (575)
Q Consensus 111 ~~~~~~~--~~-------~~~~~~-------------------~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~ 162 (575)
..+++.. .. ....-| .......+.+++++.++.|+|....++...+|+=|-.
T Consensus 91 ~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv 170 (539)
T PF03137_consen 91 LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNV 170 (539)
T ss_dssp -------------------------------------------------------------SSS----------------
T ss_pred hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccc
Confidence 2222200 00 011111 1112224677899999999999999999999999999
Q ss_pred CCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccc---------------------cc-cchhHhHHHHHHHHHHHH
Q 008158 163 DATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD---------------------SV-SWVIGFGIPTVLMIGAII 220 (575)
Q Consensus 163 ~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~---------------------~~-gw~~~f~~~~~~~~i~~~ 220 (575)
++++ -...+++++....+|..+|..+++.... ++ .|...|++.+++.++..+
T Consensus 171 ~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ai 244 (539)
T PF03137_consen 171 SKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAI 244 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 8877 7888999999999999999988886531 12 277777776666555555
Q ss_pred HHHhccceEE
Q 008158 221 LFLVGKKLYV 230 (575)
Q Consensus 221 ~~~~~~~~~~ 230 (575)
.++...|+.+
T Consensus 245 pl~~FPk~lp 254 (539)
T PF03137_consen 245 PLFFFPKKLP 254 (539)
T ss_dssp ----------
T ss_pred HHHcCCccCC
Confidence 4444444433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=121.02 Aligned_cols=158 Identities=13% Similarity=0.177 Sum_probs=123.3
Q ss_pred HHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcC
Q 008158 29 ERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLP 108 (575)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~ 108 (575)
..+.+.....+++.|+++ .|.+.++.+.+.+...++..++.++.|+++||+ |||+++..+..+..++..... ..
T Consensus 212 ~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~~--- 285 (381)
T PRK03633 212 SGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-SQ--- 285 (381)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-hh---
Confidence 334444556778888875 699999999999999999999999999999995 999999888777776654432 11
Q ss_pred CCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHH
Q 008158 109 QLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVI 188 (575)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 188 (575)
......+++.|++.+...|...+...|..|+++ ++...+.++...++|.
T Consensus 286 -------------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 286 -------------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred -------------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 123345666777777778888888899888765 7777888888889999
Q ss_pred HHHhhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 189 LITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 189 ~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
.+||.++|++.+..+|++.|.+.+.+.++..+..+
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987776665554443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=120.73 Aligned_cols=180 Identities=15% Similarity=0.080 Sum_probs=126.8
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHH-HHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKT-ITFASIAAI 95 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~-~~~~~~l~~ 95 (575)
|..+......++.....+....+++.|+++.+|.+..+.+++.+...++..++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 3445555666677777777888999999999999999999999999999999999999999995 98861 111111111
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
++.+.......... .............+.+.+.+ ..+...++..|.+|+++ |++
T Consensus 294 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~ 347 (399)
T TIGR00893 294 IAGLVLSLLMFATN-------------------YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGL 347 (399)
T ss_pred HHHHHHHHHHHHhc-------------------cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHH
Confidence 22111111000000 00022223333333344444 78889999999999877 999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHHHH
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~ 223 (575)
.+++++...++|..++|.+.|++.+..| |+..|++.+++.+++.+..+
T Consensus 348 ~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888 99999887776666555543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-09 Score=113.89 Aligned_cols=163 Identities=15% Similarity=0.118 Sum_probs=118.7
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc--cc--chHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008158 38 ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY--IG--RFKTITFASIAAILGMLTVTLTAWLPQLHPP 113 (575)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~--~G--rr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 113 (575)
.....|+++++|+++.+...+.+...+...+-+++ |.++|-+ +| ||+-++++.++..++.+.++....
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~-g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~------- 81 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLY-GLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA------- 81 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhH-HhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc-------
Confidence 45567899999999999998888888777776554 9999986 34 444555566555555555554321
Q ss_pred CCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhh
Q 008158 114 KCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQT 193 (575)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~ 193 (575)
...+.....+..++..+|.+..-.+.-+...|...++. ..|+...++.+....+|.+++..
T Consensus 82 ---------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p----~~~g~lqS~~~~~~~~G~lv~~~ 142 (433)
T PF03092_consen 82 ---------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREP----ESRGDLQSFVWGVRSVGSLVGSL 142 (433)
T ss_pred ---------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC----chhHHHHHHHHHHHHHHHHHHHH
Confidence 01133445566677888888888888999999886544 22889999999999999999999
Q ss_pred hhhhccccccchhHhHHHHHHHHHHHHHHHhccc
Q 008158 194 VLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 227 (575)
Q Consensus 194 v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~ 227 (575)
++|++.+..++++.|.+..++..+..+..++..+
T Consensus 143 l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 143 LSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred hhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999887766655554444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=122.41 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=119.5
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q 008158 27 TFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAW 106 (575)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~ 106 (575)
.+......+...+++.|+.+++|++..+.+++.....++..++.++.|+++||+ |||+.+..+..+..+.........
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~- 325 (405)
T TIGR00891 248 LFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAIG- 325 (405)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHhC-
Confidence 333344455667889999999999999999999999999999999999999995 999998887765533222221111
Q ss_pred cCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHH
Q 008158 107 LPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 186 (575)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 186 (575)
.+.+.+.+..++.++..++..+..++++.|.+|+++ |++.+++.+...++
T Consensus 326 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~ 375 (405)
T TIGR00891 326 ------------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNL 375 (405)
T ss_pred ------------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHH
Confidence 033445566667777777777888889999999877 99999999999999
Q ss_pred HHHHHhhhhhhcccccc-chhHhHH
Q 008158 187 VILITQTVLVYIQDSVS-WVIGFGI 210 (575)
Q Consensus 187 g~~~~~~v~~~l~~~~g-w~~~f~~ 210 (575)
|..++|.+.|++.+..| |+..+..
T Consensus 376 g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 376 GGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHHHhccccchhHHh
Confidence 99999999999999888 8766553
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=123.10 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=127.4
Q ss_pred HHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008158 31 LATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQL 110 (575)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~ 110 (575)
..+..+..+++.|+++ .|++ +.+.....+.++..++.++.|++.||+ ||||.+..+..+..++.+...+..
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~----- 300 (392)
T PRK12382 230 VGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP----- 300 (392)
T ss_pred HHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc-----
Confidence 4444555667777764 4654 355666777788889999999999995 999999998888888877666543
Q ss_pred CCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHH
Q 008158 111 HPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILI 190 (575)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 190 (575)
+...+++..++.|++.+...+.......|.+|+++ |++.+++++...++|..+
T Consensus 301 ---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 301 ---------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGV 353 (392)
T ss_pred ---------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHH
Confidence 34556778888999998888888888889998877 999999999999999999
Q ss_pred HhhhhhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 191 TQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 191 ~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
+|.+.|++.+..||+..|.+.+++.+++.++.+.
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888777776666553
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.5e-11 Score=125.53 Aligned_cols=155 Identities=8% Similarity=0.030 Sum_probs=123.0
Q ss_pred hHHHHHHHHhhhh---CCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008158 36 LLANFMVYLLKEY---HMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHP 112 (575)
Q Consensus 36 ~~~~l~~yl~~~l---~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 112 (575)
....++.|+.+.+ +.+..+.+.+.++..++..++.+++|+++||+ |||+.+..+..+..++.++.+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~------- 313 (420)
T PRK09528 242 FDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT------- 313 (420)
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc-------
Confidence 3345677766543 56667889999999999999999999999995 999999998888888888777654
Q ss_pred CCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHH-HHHHHHHHHHHH
Q 008158 113 PKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW-YYTTFTVVILIT 191 (575)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~~ 191 (575)
+.+.+++.+++.|++.+...+....++.|.+|++. |+...+. ++...++|..++
T Consensus 314 -------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig 368 (420)
T PRK09528 314 -------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFL 368 (420)
T ss_pred -------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHH
Confidence 45567788888999888877777788899998765 6766655 567788999999
Q ss_pred hhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 192 QTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 192 ~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
|.+.|++.+..||+..|.+.+++.++..++.+
T Consensus 369 ~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 369 STLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976665554444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=122.61 Aligned_cols=155 Identities=8% Similarity=-0.023 Sum_probs=127.6
Q ss_pred hhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008158 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPP 113 (575)
Q Consensus 34 ~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 113 (575)
.++..+++.|+++.+|.+..+.+++.+...++..++.++.|++.||. ++++.+..+.++..++.+...+..
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-------- 310 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP-------- 310 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc--------
Confidence 45667788999888999999999999999999999999999999994 888888888877777776665533
Q ss_pred CCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhh
Q 008158 114 KCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQT 193 (575)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~ 193 (575)
+.....+..++.|++.+...+...+++.|..|++. |++.+++++...++|..+||.
T Consensus 311 ------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~ 366 (417)
T PRK10489 311 ------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAA 366 (417)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHH
Confidence 44556677788888888777777788899999876 999999999999999999999
Q ss_pred hhhhccccccchhHhHHHHHHHHHHHHH
Q 008158 194 VLVYIQDSVSWVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 194 v~~~l~~~~gw~~~f~~~~~~~~i~~~~ 221 (575)
++|++.+..|++..+++.+.+.++..++
T Consensus 367 l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 394 (417)
T PRK10489 367 LLGGLGAMMTPVASASASGFGLLIIGVL 394 (417)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 9999999889888887666554443333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-10 Score=122.01 Aligned_cols=175 Identities=8% Similarity=-0.028 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc-cc-hHHHHHHHHHHHHH
Q 008158 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI-GR-FKTITFASIAAILG 97 (575)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-Gr-r~~~~~~~~l~~~~ 97 (575)
+.+....++....++++.++++.|+.+++|++..+.+...+.+.++..++.+++|+++||+. ++ ++......+...++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~ 325 (434)
T PRK11663 246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence 33344455555556677788999999899999999999999999999999999999999942 22 23222222222222
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhh
Q 008158 98 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 177 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 177 (575)
......... . +.....+..+..|++.............|.+|+++ |++..
T Consensus 326 ~~~~~~~~~-----------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 375 (434)
T PRK11663 326 VGSLWLMPF-----------------------A-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAAT 375 (434)
T ss_pred HHHHHHccc-----------------------c-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHH
Confidence 111111110 0 12222233333444322222223445678888766 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 178 NWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 178 ~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
++.+...++|..++|.+.|++.+..||+..|++.+++.+++.+..+.
T Consensus 376 g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 376 GFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887776665554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=121.42 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc-ccchHHHHHHH--HHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY-IGRFKTITFAS--IAAI 95 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~-~Grr~~~~~~~--~l~~ 95 (575)
.+..+...++..++++...++++.|++ ++|++..+.+++.++..++..++.+++|+++||+ +++|+....+. ++..
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG 321 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 344444556666677777888899986 4799999999999999999999999999999983 23444333333 3333
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
++.+...... +.+.+++.+++.|++.+...++..+++.|.+|+++ +++
T Consensus 322 l~~ll~~~~~--------------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~ 369 (455)
T TIGR00892 322 LTHLLCALAG--------------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSS 369 (455)
T ss_pred HHHHHHHHhc--------------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------Hhh
Confidence 3333443332 45667888999999999999999999999999877 999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccccc-cchhHhHHHHHHHHHHHHH
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~-gw~~~f~~~~~~~~i~~~~ 221 (575)
.+++++...++|..+||.++|++.+.. +|++.|++.+++.+++.+.
T Consensus 370 ~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 370 AVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 999999999999999999999998877 5999999877766655543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=6e-10 Score=117.53 Aligned_cols=170 Identities=9% Similarity=0.016 Sum_probs=140.6
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
|..+..+...++...+.+...++.++|+++ +|.+..+.+.+.+...++..+..++.|++.||+ |+|+.+..+.++..+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 334555556666677777888899999964 899999999999998899999999999999995 999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
..+..++++ +.+.+++...++|+..+...+....++.+. |+++ |+++
T Consensus 283 ~~~~~~~~~--------------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~ 329 (382)
T TIGR00902 283 RWAIIGAIE--------------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKL 329 (382)
T ss_pred HHHHHHhHh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHH
Confidence 988887755 567788889999999999999999999987 7766 8888
Q ss_pred hHHHHH-HHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHH
Q 008158 177 FNWYYT-TFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 177 ~~~~~~-~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~ 222 (575)
.+.++. ...+|..+++.++|++.+.+|+ ..|++.+++.++++++.
T Consensus 330 q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 330 QALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 888764 5679999999999999998886 56776666665555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=123.04 Aligned_cols=174 Identities=15% Similarity=0.053 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc--chHHH-HHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIG--RFKTI-TFASIAAI 95 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G--rr~~~-~~~~~l~~ 95 (575)
.+......++.....++...++|.|++++.|++..+++.+...+.++..++.+++|+++|| ++ ||+.. .....+..
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~~ 333 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHHH
Confidence 3344455555566667888999999999999999999999999999999999999999999 54 44432 22222333
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
++.+...+... .+.....+..++.|.+..........+..|.+|+++ |++
T Consensus 334 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~ 383 (452)
T PRK11273 334 IATIVYWLNPA------------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 383 (452)
T ss_pred HHHHHHHHhcc------------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhh
Confidence 33332222110 022223334444444332222223345678999877 999
Q ss_pred hhHHHHHHHHHHHHH-HhhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 176 FFNWYYTTFTVVILI-TQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~-~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
++++.+...++|+.+ +|.+.|++.+..||+..|++.+++.+++++...
T Consensus 384 ~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 384 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999988888655 799999999999999999877776666655544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.18 E-value=7e-10 Score=117.84 Aligned_cols=174 Identities=10% Similarity=0.014 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHH-HHHHHHHHHH
Q 008158 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTIT-FASIAAILGM 98 (575)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-~~~~l~~~~~ 98 (575)
+......++....+++..+++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~~ 302 (402)
T TIGR00897 225 LLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIFT 302 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHH
Confidence 34445566667777888889998885 5899999999999999999999999999999995 9988764 2333333333
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
+.+....... ..+.+..++..++.|++.+...+. .....|..| ++ |++.++
T Consensus 303 ~~l~~~~~~~---------------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~~~g 353 (402)
T TIGR00897 303 LALYYIPQHF---------------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGAAMS 353 (402)
T ss_pred HHHHHHHHcc---------------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHHHHH
Confidence 3332221000 013445566777778877766553 445556543 45 999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 179 WYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
+++...++|..++|.++|++.+..||+..|++.+++.+++.++..+
T Consensus 354 ~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 354 VLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888777666665544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-10 Score=113.48 Aligned_cols=129 Identities=14% Similarity=-0.019 Sum_probs=89.6
Q ss_pred hHHHHHHHHhhhhCC---Ch----hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchH-HHHHHHHHHHHHHHHHHHHhhc
Q 008158 36 LLANFMVYLLKEYHM---NQ----TSAANILNIWGGVTNFAPLLGAFISDTYIGRFK-TITFASIAAILGMLTVTLTAWL 107 (575)
Q Consensus 36 ~~~~l~~yl~~~l~~---~~----~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~-~~~~~~~l~~~~~~~~~~~~~~ 107 (575)
+.+++|+|+++..+- ++ +-.+...++..+...+..|+-|-++|.. |+|| .+-...++.++.++.+.++.+
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~- 111 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP- 111 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence 556889999987654 32 4456667788888889999999999996 8665 555555556666666666541
Q ss_pred CCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHH
Q 008158 108 PQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVV 187 (575)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 187 (575)
..+.....+..++..++..+......++..|..++++ -++..+.-+...++|
T Consensus 112 ----------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylg 163 (438)
T COG2270 112 ----------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLG 163 (438)
T ss_pred ----------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCccccccccccccc
Confidence 1255666777778899999999999999999998766 344444444445555
Q ss_pred HHHHhhh
Q 008158 188 ILITQTV 194 (575)
Q Consensus 188 ~~~~~~v 194 (575)
+.+.-++
T Consensus 164 s~i~li~ 170 (438)
T COG2270 164 SVILLIF 170 (438)
T ss_pred chHHHHH
Confidence 5544433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-10 Score=120.49 Aligned_cols=185 Identities=17% Similarity=0.098 Sum_probs=149.8
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccch--HHHHHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRF--KTITFASIA 93 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr--~~~~~~~~l 93 (575)
.|.+...++..++-+-+...+......|.++++|++.++...+..+..+...+++++.|++.|| +|.| ++++.+.++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHH
Confidence 3566666777777777878889999999999999999999999999999999999999999999 5998 888888877
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 94 AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
..+..+...+.- .+.. .+..+.+.+++.-++.|+..|..++..-++.++..|+++ .
T Consensus 359 ~~~i~~~g~~G~-~~~~-----------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e 414 (477)
T PF11700_consen 359 WIIIPLYGLFGF-WPSF-----------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------E 414 (477)
T ss_pred HHHHHHHHHHHh-hhcc-----------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------h
Confidence 744333332210 0000 011255668888889999999999999999999999977 8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHHHHhc
Q 008158 174 NSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~ 225 (575)
+.++++|.......+.+||.+.|.+.+..| -|++++...++.++++++.+..
T Consensus 415 ~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 415 AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988776 8888887777777777766543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.2e-10 Score=112.63 Aligned_cols=84 Identities=10% Similarity=-0.098 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhcccc----------
Q 008158 132 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS---------- 201 (575)
Q Consensus 132 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~---------- 201 (575)
++..++++.++.|.|.+..++..++++++..|+++ +++.+++...+..+|..++|.+++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 67889999999999999999999999999998877 89999999999999999999999876521
Q ss_pred ------ccchhHhHHHHHHHHHHHHH
Q 008158 202 ------VSWVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 202 ------~gw~~~f~~~~~~~~i~~~~ 221 (575)
.+|+++|++.+....+..++
T Consensus 83 ~~~~~~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899988555443333333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=112.65 Aligned_cols=179 Identities=13% Similarity=0.070 Sum_probs=146.4
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
.+.++..+...++...+.|..++++-+++++..|+|.+..+++...|.++..++.+++|+++|| +.|+++.....+..
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a 287 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA 287 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence 3556677778888889999999999999999999999999999999999999999999999999 78888888888888
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
+..+.+.+..+ +.+...+..++.|+...........-.++..|+ . +..
T Consensus 288 ~~~l~l~~~~~-------------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~-~------~~~ 335 (394)
T COG2814 288 LALLALTFTGA-------------------------SPALALALLFLWGFAFSPALQGLQTRLARLAPD-A------ADL 335 (394)
T ss_pred HHHHHHHHhcc-------------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC-c------hHH
Confidence 77777766542 344555555667777666555555555553333 3 799
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccce
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKL 228 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~ 228 (575)
+.+++....|+|..+|..++|.+.+++|+....++.+++.++++++.+...++
T Consensus 336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999888888877665443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.2e-10 Score=118.45 Aligned_cols=167 Identities=12% Similarity=0.058 Sum_probs=119.2
Q ss_pred hHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008158 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKC 115 (575)
Q Consensus 36 ~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (575)
......+++.+++|++..+.++......++..++.+++|+++||+ |||+.+..+.++..++.++.++...... .+
T Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 376 (481)
T TIGR00879 302 AIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV--TG-- 376 (481)
T ss_pred ehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc--CC--
Confidence 334445566668899998888899999999999999999999995 9999999988888887777664221000 00
Q ss_pred CCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhh
Q 008158 116 DVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL 195 (575)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~ 195 (575)
.....+...+....+..+....+..+....+..|.+|+++ |+...++.+...++|.+++|.+.
T Consensus 377 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~ 439 (481)
T TIGR00879 377 -----------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLF 439 (481)
T ss_pred -----------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000012222222222222233345666777899999877 99999999999999999999999
Q ss_pred hhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 196 VYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 196 ~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
+++.+..+|++.|++.+++.+++.++.++
T Consensus 440 ~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 440 PTMLESIGVGGVFIFFGGLNVLGLIFVYF 468 (481)
T ss_pred HHHHHhcCccceehhHHHHHHHHHHHHhe
Confidence 99988889999998877776666655544
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-10 Score=118.15 Aligned_cols=152 Identities=12% Similarity=0.022 Sum_probs=108.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH-HHH
Q 008158 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGML-TVT 102 (575)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~-~~~ 102 (575)
...++....++.+..++|.|+++.+|++..+.+++...+.++..++.+++|+++||+ |||+++..+..+..+... ...
T Consensus 245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 323 (434)
T PRK15075 245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALS 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence 334445566777888899999988999999999988888899999999999999995 999988776554433221 111
Q ss_pred HHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHH
Q 008158 103 LTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYT 182 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 182 (575)
.... ........+...+.+++.+...+....+..|.+|++. |+..+++.+.
T Consensus 324 ~~~~-----------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~ 374 (434)
T PRK15075 324 WLVA-----------------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYS 374 (434)
T ss_pred HHHc-----------------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHH
Confidence 1110 0022223333444566666666666788899999887 9999998655
Q ss_pred HHH-HHHHHHhhhhhhccccccch
Q 008158 183 TFT-VVILITQTVLVYIQDSVSWV 205 (575)
Q Consensus 183 ~~~-ig~~~~~~v~~~l~~~~gw~ 205 (575)
..+ +++.++|.+.|++.+..|++
T Consensus 375 ~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 375 LATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHhhhHHHHHHHHHHhcCCc
Confidence 544 45778999999999887854
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=118.56 Aligned_cols=172 Identities=10% Similarity=0.076 Sum_probs=123.2
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHH-HHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 008158 27 TFERLATIGLLANFMVYLLKEYHMNQTSAANILN-IWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTA 105 (575)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~-~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~ 105 (575)
++-....+....+.++|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |||+.+..+.++..++.+......
T Consensus 232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~ 310 (491)
T PRK11010 232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLS 310 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677888988889999999999875 55678999999999999995 999988776666555443332211
Q ss_pred hcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHH
Q 008158 106 WLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFT 185 (575)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (575)
..+ .+...+.+..++..++.|...+...++..+..+++. +++.+++.+...+
T Consensus 311 ~~~----------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~ 362 (491)
T PRK11010 311 ITD----------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSA 362 (491)
T ss_pred hcc----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHH
Confidence 000 022333444444444444444555777778887766 7888999999999
Q ss_pred HHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccc
Q 008158 186 VVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 227 (575)
Q Consensus 186 ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~ 227 (575)
+|..+++.+.|++.+..||+..|.+.+++.++++++.+..++
T Consensus 363 lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 363 VGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999989889999999999999999888888877776665543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-08 Score=105.02 Aligned_cols=362 Identities=14% Similarity=0.139 Sum_probs=211.8
Q ss_pred cchhHHHHHHHHHHHHHhhhhH---HHHHHHHhhhhCCChhh-HHHHHHHH----HHHHHHHhhhhHHHhhhcccchHHH
Q 008158 16 WKAMPYILGNETFERLATIGLL---ANFMVYLLKEYHMNQTS-AANILNIW----GGVTNFAPLLGAFISDTYIGRFKTI 87 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~yl~~~l~~~~~~-~~~i~~~~----~~~~~~~~~~~G~laD~~~Grr~~~ 87 (575)
-..+.-+....+...++++... .+...+.....+.+..+ .+...... .+...+.++..|.++||+ |||..+
T Consensus 17 ~~~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L 95 (463)
T KOG2816|consen 17 LASMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVL 95 (463)
T ss_pred cchhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhH
Confidence 3445555566666666665444 66677777666554333 22333333 567788889999999996 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHH--hccCCccccccccccCCCCC
Q 008158 88 TFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSI--GTGGIRPCSIPFGVDQFDAT 165 (575)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~--g~g~~~~~~~~~~~~~~~~~ 165 (575)
........+..+...+.. +++++ +.++ +.+.+.+...++++|....+
T Consensus 96 ~~~~~~~~l~~~~~~~~~----------------------------~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 96 LLPLFGTILPALCLLFQG----------------------------YWFFL---LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred HHHHHHHHHhHHHHHHHH----------------------------HHHhh---hcccccchhhhhhhhhhheeeccchh
Confidence 998888888877776632 23333 3333 34556677888999999887
Q ss_pred CcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHH
Q 008158 166 TDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQV 245 (575)
Q Consensus 166 ~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (575)
+ |...+++.+.....+..++|..++++.+..|.-..|.+.++..++..+..++..|+...++.+++ .
T Consensus 145 ~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~------ 211 (463)
T KOG2816|consen 145 E------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-A------ 211 (463)
T ss_pred H------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-c------
Confidence 7 99999999999999999999999999998999999998888877777665544443211111100 0
Q ss_pred HHHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhh
Q 008158 246 LVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKC 325 (575)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (575)
..++ ..+. .....+..+ +++.... ....+.
T Consensus 212 -----~~~~-~~~~--------------------~~~~~~~~~----------------------~~~~~~~--~~~~r~ 241 (463)
T KOG2816|consen 212 -----TLRE-LTPG--------------------SLDSSHVAD----------------------AFQSLTK--VGPDRL 241 (463)
T ss_pred -----cccc-cCCC--------------------cccchhhhh----------------------hhhhhcc--cCCCcc
Confidence 0000 0000 000000000 0000000 001111
Q ss_pred hhhhHHHHHHHHHHHHhhccccceeeeecccccccCCCcccc-Cccccccc----hhHhhHhhhhcccchhHHHhhhhhc
Q 008158 326 LIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQI-PPGTVGVI----SMITIGLWLPFYDTVLVPALRKITK 400 (575)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~i----~~~~~~i~~~~~~~~~~~~~~r~~~ 400 (575)
.+..+ .......+.......... ..+.+..++ +.. ..+.+... ..+..++..|+ +.+.++.
T Consensus 242 ~l~l~--l~~~~~~~~~~~~~~~~~---~~yl~~~f~--w~~~~~s~~~~~~~~~~~i~~l~~~~~-------l~~~l~~ 307 (463)
T KOG2816|consen 242 LLLLL--LVAFLSSLPEAGGASDVL---LLYLKAKFG--WNKKEFSDLLSLVSILGIISQLLLLPL-------LSSILGE 307 (463)
T ss_pred chHHH--HHHHHHHHHHhcCceeEE---EEEEeeecC--cCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhh
Confidence 11111 111111111111111011 112222221 111 11112222 22223332222 2333332
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhH
Q 008158 401 HEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMK 480 (575)
Q Consensus 401 r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r 480 (575)
| +.+.+|+..-.+...+.+++ ++.|.+..... .........|...+++...+.++.+
T Consensus 308 ~-------~~i~lGl~~~~~~~~~~af~---------------~~~w~~~~~~v-~~~~~~~~~pa~~s~~s~~v~~~e~ 364 (463)
T KOG2816|consen 308 K-------RLISLGLLSEFLQLLLFAFA---------------TETWMMFAAGV-VVALAGIVFPAIRAFASILVSPEEQ 364 (463)
T ss_pred h-------hHhhHHHHHHHHHHHHHHHh---------------ccchhhhHHHH-HHHhhcchhHHHHhHHHhhcccccc
Confidence 2 36888999999998888876 34445444433 3445568899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008158 481 SIANSLLFCSFGFASYLSSLLITIVHGVT 509 (575)
Q Consensus 481 g~~~g~~~~~~~lg~~l~~~l~~~i~~~~ 509 (575)
|+..++......+.+.+++.+.+.+...+
T Consensus 365 g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 365 GKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred cchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999988887654
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=115.52 Aligned_cols=166 Identities=14% Similarity=-0.015 Sum_probs=109.2
Q ss_pred HHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHH-Hhh
Q 008158 28 FERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTL-TAW 106 (575)
Q Consensus 28 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~-~~~ 106 (575)
+....+|++.+++|.|+.+.+|++..+.+...++..+...++.++.|+++||+ |||+++..+.++..+....... ...
T Consensus 254 ~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~~ 332 (432)
T PRK10406 254 AGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQN 332 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34667788899999999999999999999988888888888889999999995 9999887766654333322211 110
Q ss_pred cCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHH
Q 008158 107 LPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTV 186 (575)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 186 (575)
..+....+....+.+++.+...+....+..|.+|++. |++++++.+...++
T Consensus 333 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~ 383 (432)
T PRK10406 333 -----------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANA 383 (432)
T ss_pred -----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHH
Confidence 0011111111122223333333456678899999988 99999998877654
Q ss_pred -HHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHHHHh
Q 008158 187 -VILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 187 -g~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~ 224 (575)
++...|.+.+++.. .| |...+++.++..+++++..++
T Consensus 384 ~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 384 LFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34457777776644 45 555566555555555555444
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-08 Score=111.61 Aligned_cols=206 Identities=14% Similarity=0.191 Sum_probs=149.6
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
+.+..+++...+.--...+.+....+-+.+.++++.++.|++.+.+-++..+...+-.+.+-|. -|-|.+-++.+++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence 4445555544444444457788888889999999999999999999999999999999999995 788899999999999
Q ss_pred HHHHHHHHhhcCC-CC-----------CC-------------CCCCCCCCCCccCCCcc-hhhHHHHHHHHHHHHhccCC
Q 008158 97 GMLTVTLTAWLPQ-LH-----------PP-------------KCDVAKPPFGQCKSANS-MQLGVLVMGLGLLSIGTGGI 150 (575)
Q Consensus 97 ~~~~~~~~~~~~~-~~-----------~~-------------~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~g~g~g~~ 150 (575)
|+++.++-+.+.. +. .+ ...+.++....|...+. .-...++++.++.|+|...+
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 9999887432221 10 00 00001111111111222 23446788899999999999
Q ss_pred ccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccc------------------cc-cchhHhHHH
Q 008158 151 RPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD------------------SV-SWVIGFGIP 211 (575)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~------------------~~-gw~~~f~~~ 211 (575)
++...+|+=|-..+++ -...+++.+....+|.++|..++++... ++ .|...|++.
T Consensus 255 ~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~ 328 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC 328 (735)
T ss_pred ccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence 9999999999888766 7889999999999999999999887532 11 388888888
Q ss_pred HHHHHHHHHHHHhccceE
Q 008158 212 TVLMIGAIILFLVGKKLY 229 (575)
Q Consensus 212 ~~~~~i~~~~~~~~~~~~ 229 (575)
+.+.++..+.+++..+..
T Consensus 329 g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 329 GALLLFSAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHHHHHHHhCcccC
Confidence 777777766666655543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.3e-09 Score=112.92 Aligned_cols=155 Identities=10% Similarity=0.048 Sum_probs=111.7
Q ss_pred HHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 008158 41 MVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKP 120 (575)
Q Consensus 41 ~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (575)
.+++.+++|++..+..+......+...++.+++|+++||+ |||+.++.+.++.+++.+.++.....+
T Consensus 294 ~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~------------ 360 (479)
T PRK10077 294 APEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ------------ 360 (479)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC------------
Confidence 3445567898887777777788888899999999999995 999999999999988888776542100
Q ss_pred CCCccCCCcchhhHHHHHHHHHHHHhccC-CccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhh---
Q 008158 121 PFGQCKSANSMQLGVLVMGLGLLSIGTGG-IRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV--- 196 (575)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~--- 196 (575)
. .........++.+.+.+. ..|+.+.++.|.+|+++ |+.++++.+...++|..+++.+.+
T Consensus 361 ---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 361 ---------A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred ---------c-ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 0 111223333344444433 34677899999999877 999999999998888888865544
Q ss_pred ---hccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 197 ---YIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 197 ---~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
++.+.++|++.|++.++..+++.++.++
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
T PRK10077 425 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455 (479)
T ss_pred hccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence 4446788998888876665555555443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-09 Score=110.65 Aligned_cols=186 Identities=13% Similarity=-0.006 Sum_probs=138.4
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
.+..|++...++...=++.++...++.|++++++.++.+++.+...+.+...+..+.+|+|+||+ |.+|+.+.....++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 45566666667666666678889999999999999999999999999999999999999999995 99999999888888
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
++..+..+..+... . ..+....+...+.+++..|.-......++..++|++ -+.
T Consensus 296 ~~~~~l~~~~~~~~--~-----------------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~ 349 (417)
T COG2223 296 LAAALLSLFLTGFG--H-----------------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGA 349 (417)
T ss_pred HHHHHHHccccccc--c-----------------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhH
Confidence 88888776431000 0 012333333333334444444445666667777753 599
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHHHHhccce
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGKKL 228 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~ 228 (575)
..++.....++|++.-|...+...+..| ++..|++-..+.+++.++.+..+.+
T Consensus 350 v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 350 VTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988888877777 8888887777777676665554433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=115.79 Aligned_cols=176 Identities=15% Similarity=0.036 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH---
Q 008158 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILG--- 97 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~--- 97 (575)
......++.....+++.+++|.|+++..|++..+.+++...+.++..++.+++|+++||+ |+++....+..+..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~ 333 (438)
T TIGR00712 255 YIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVTIA 333 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHH
Confidence 333445555566678889999999999999999999999999999999999999999995 7544222333222221
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhh
Q 008158 98 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 177 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 177 (575)
.+...... ..+.....+..++.|++..+..........|.+|+++ |+++.
T Consensus 334 ~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 383 (438)
T TIGR00712 334 VIVYWMNP------------------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAA 383 (438)
T ss_pred HHHHHhcC------------------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeeh
Confidence 11111110 0022223333344454432222222345678888877 99999
Q ss_pred HHHHHHHHHH-HHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccc
Q 008158 178 NWYYTTFTVV-ILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKK 227 (575)
Q Consensus 178 ~~~~~~~~ig-~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~ 227 (575)
++++...++| .+++|.+.|++.+..||...|++.++..++++++.++..+
T Consensus 384 g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
T TIGR00712 384 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 434 (438)
T ss_pred hhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998888877 4689999999999889999998776666556555554433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=114.59 Aligned_cols=163 Identities=14% Similarity=0.086 Sum_probs=107.0
Q ss_pred HHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchH-------HHHHHHHHHHHHHHHH
Q 008158 29 ERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFK-------TITFASIAAILGMLTV 101 (575)
Q Consensus 29 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~-------~~~~~~~l~~~~~~~~ 101 (575)
.....++...+++.|+.+++|++..+++.+.+++.++..++.+++|+++||+ |||+ ......++..++.++.
T Consensus 264 ~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~l~~i~~~~~ 342 (476)
T PLN00028 264 SFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQTLGGVFCIWL 342 (476)
T ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHHHHHHHHHHh
Confidence 3334455667789999989999999999999999999999999999999995 8762 2212222222222222
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHH
Q 008158 102 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 181 (575)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 181 (575)
+... +.....+..++.+++.+...+...++..+..| ++ |+...++.+
T Consensus 343 ~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~ 389 (476)
T PLN00028 343 GRAN--------------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVISGLTG 389 (476)
T ss_pred cccc--------------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhhhhhh
Confidence 2111 23334444445555544444445555555544 34 899999988
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhcc
Q 008158 182 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGK 226 (575)
Q Consensus 182 ~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~ 226 (575)
.+.++|+.+++.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 390 ~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 390 AGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred ccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 888888888876654 22345799999988877777766665543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-09 Score=110.38 Aligned_cols=154 Identities=16% Similarity=0.084 Sum_probs=124.8
Q ss_pred hhHHHHHHHHHHHHHhhhhH-HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 18 AMPYILGNETFERLATIGLL-ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
..+......++.....++.. ...+.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+..+..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 289 (365)
T TIGR00900 211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGL 289 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHH
Confidence 34444445555555555555 5667777777999999999999999999999999999999995 999999888777777
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
+.+...+... +.+.+++..++.|++.+...+...+++.|..|+++ |++.
T Consensus 290 ~~~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 338 (365)
T TIGR00900 290 AILVVGLTPP-------------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRV 338 (365)
T ss_pred HHHHHHhhch-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence 7666665431 25567788889999999999999999999999877 9999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcccccc
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQDSVS 203 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~~~g 203 (575)
.++++...++|..++|.++|++.+.+|
T Consensus 339 ~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 339 FGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999887543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-09 Score=112.03 Aligned_cols=161 Identities=10% Similarity=-0.048 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhh-hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHH-HHHHHHHHHHHH
Q 008158 21 YILGNETFERLATIGLLANFMVYLLK-EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKT-ITFASIAAILGM 98 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~-~~~~~~l~~~~~ 98 (575)
......++....++++.+++|.|+++ ..|.+..+++.+.....++..++.+++|+++||+ |||+. .....++..++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~~~ 324 (412)
T TIGR02332 246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAAGW 324 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHHHH
Confidence 34455666677778899999999987 3577888999999999999999999999999995 97774 333333333332
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
...... + +....+.+..+.++|.....+.......|.+|+++ |+.+++
T Consensus 325 -~~~~~~--~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g 372 (412)
T TIGR02332 325 -LLASAT--D-----------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIA 372 (412)
T ss_pred -HHHHhc--C-----------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHH
Confidence 222111 0 11111222223333433333334444566777766 999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHH
Q 008158 179 WYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVL 214 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~ 214 (575)
+.+...++|..++|.+.|.+.+..| |++.|++.++.
T Consensus 373 ~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 373 VINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999999999998774 99998865553
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.4e-09 Score=112.01 Aligned_cols=160 Identities=13% Similarity=0.043 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
.+..+...++...+.+......+.|.+..++ +..+.+++.....++..++.++.|+++||+ |||+++..+.++.+++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~ 301 (437)
T TIGR00792 224 LLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLGY 301 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 3444555566666655544445555555555 566777788888899999999999999995 99999999988888877
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCC-cccccchhhhh
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT-DEGVKGINSFF 177 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~ 177 (575)
+...+..+ +...+++..++.|++.+...+...++++|..|.++ +.++++++..+
T Consensus 302 ~~~~~~~~-------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 356 (437)
T TIGR00792 302 LIFFFAGS-------------------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVY 356 (437)
T ss_pred HHHHHcch-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHH
Confidence 76655321 34556667778899999888999999999887543 22334579999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccch
Q 008158 178 NWYYTTFTVVILITQTVLVYIQDSVSWV 205 (575)
Q Consensus 178 ~~~~~~~~ig~~~~~~v~~~l~~~~gw~ 205 (575)
+++++...+|..+++.+.|++.+..||.
T Consensus 357 ~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 357 SVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999987766663
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.6e-09 Score=110.06 Aligned_cols=165 Identities=10% Similarity=0.037 Sum_probs=113.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 008158 24 GNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTL 103 (575)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~ 103 (575)
+..++.....+...+++++|+.+.+|+++.+.+.+.+...++..++.++.|++.||+ |+|+.+..+..+..++.+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~ 284 (382)
T PRK10091 206 AATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFF 284 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHH
Confidence 333444444455566778899888999999999999999999999999999999995 9999998888888777765543
Q ss_pred HhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCC-CCCCcccccchhhhhHHHHH
Q 008158 104 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF-DATTDEGVKGINSFFNWYYT 182 (575)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~ 182 (575)
..+ +.+...+..++.++|..+..+.......+.. +++. ++.. ..+.
T Consensus 285 ~~~-------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~ 331 (382)
T PRK10091 285 FGG-------------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQI 331 (382)
T ss_pred HHh-------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHH
Confidence 221 2233444445556655444443333333333 3222 3433 3356
Q ss_pred HHHHHHHHHhhhhhhcccc-ccchhHhHHHHHHHHHHHHHH
Q 008158 183 TFTVVILITQTVLVYIQDS-VSWVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 183 ~~~ig~~~~~~v~~~l~~~-~gw~~~f~~~~~~~~i~~~~~ 222 (575)
..++|..+||.++|++.+. .+|+..+.+.++..++.+...
T Consensus 332 ~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 332 AFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 6789999999999998884 689999988766555444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-08 Score=107.01 Aligned_cols=162 Identities=11% Similarity=-0.055 Sum_probs=120.4
Q ss_pred HHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q 008158 28 FERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWL 107 (575)
Q Consensus 28 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~ 107 (575)
+.....+...+..+.|+.+++|++..+.++......++..++.++.|+++||+ |||+.+..+.++..++.+...+....
T Consensus 226 ~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 304 (406)
T PRK15402 226 LVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLLLAALATVI 304 (406)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344445556678888889999999999888888888889999999999995 99999998888888877777654311
Q ss_pred CCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHH
Q 008158 108 PQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVV 187 (575)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 187 (575)
+ ..+...++++.++.|+|.+...+......... ++++ |++..+.++....+|
T Consensus 305 ~---------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~~~~~~~~ 356 (406)
T PRK15402 305 S---------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAMGMLSMLI 356 (406)
T ss_pred c---------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHHHHHHHHH
Confidence 1 11345567788889999888777655544333 3344 899999999999999
Q ss_pred HHHHhhhhhhccccccchhHhHHHHHHHHHH
Q 008158 188 ILITQTVLVYIQDSVSWVIGFGIPTVLMIGA 218 (575)
Q Consensus 188 ~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~ 218 (575)
..+|+.+.+++.+..++....+..++..++.
T Consensus 357 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 357 FTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 9999999999988777665544444443333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.7e-09 Score=112.59 Aligned_cols=156 Identities=11% Similarity=-0.046 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
....+...++....+.......+.|++..+|.++.+.+++.....++..++.++.|+++||+ |||+++..+..+..++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS 341 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 44444555565566544555677777778999999999999888888888889999999995 99999998888877776
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
....+... ......+.+..++.|++.+...+....+..+..|+++ ++..++
T Consensus 342 ~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~ 392 (471)
T PRK10504 342 LLFMLVAL-----------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNS 392 (471)
T ss_pred HHHHhccc-----------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHH
Confidence 66554321 0022334445667788888888888888889999877 999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccc
Q 008158 179 WYYTTFTVVILITQTVLVYIQDSVSW 204 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~~~gw 204 (575)
+.+....+|..+|+.++|.+.+..|+
T Consensus 393 ~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 393 LLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999887665544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.8e-09 Score=108.26 Aligned_cols=164 Identities=7% Similarity=-0.016 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
.+..+...++......+....++.|++ +.|.+..+.+.+.+...++..+..++.|++.||+ |+|+.+..+.++..++.
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~ 284 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRW 284 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
Confidence 343444455555666667788888985 5899999999999988888888999999999995 99999999988888877
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
+..+.++ +.+.+++..++.|++.+...+....+..+. ++++ +++..+
T Consensus 285 ~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~ 331 (382)
T PRK11128 285 GLMGSTT--------------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQA 331 (382)
T ss_pred HHHHhhh--------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHH
Confidence 7666544 566678888999999888888877777765 4434 677788
Q ss_pred HHH-HHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHH
Q 008158 179 WYY-TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGA 218 (575)
Q Consensus 179 ~~~-~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~ 218 (575)
.+. ....+|..+||.++|++.|..|+. .|+..+++.+++
T Consensus 332 ~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 332 LYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 776 445778899999999999988874 555555444433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-09 Score=107.26 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=115.4
Q ss_pred hhhHHHHHHHHhhh--hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008158 34 IGLLANFMVYLLKE--YHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLH 111 (575)
Q Consensus 34 ~~~~~~l~~yl~~~--l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~ 111 (575)
-++..+++.|+.+. +|+++++.+...+.+..+..++.++++++.|| +|+||++.++..+.+++.++....+
T Consensus 157 ~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~------ 229 (310)
T TIGR01272 157 VSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTH------ 229 (310)
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcC------
Confidence 45677899999854 79999999999999999999999999999999 5999998888887777765544422
Q ss_pred CCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHH
Q 008158 112 PPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILIT 191 (575)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~ 191 (575)
.. ....+.++.|++.+..+|...+...+.+|++. +++.++. ....+|+.++
T Consensus 230 --------------------~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~asai~-~~~~~Gg~i~ 280 (310)
T TIGR01272 230 --------------------GY-VAMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGSGIL-CLAIVGGAIV 280 (310)
T ss_pred --------------------CH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHH-HHHHhcchHH
Confidence 11 12335557899999999999999999888643 3444444 5667999999
Q ss_pred hhhhhhccccccchhHhHHHHHHH
Q 008158 192 QTVLVYIQDSVSWVIGFGIPTVLM 215 (575)
Q Consensus 192 ~~v~~~l~~~~gw~~~f~~~~~~~ 215 (575)
|.+.|++.|..|.+..|++..++.
T Consensus 281 P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 281 PLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred HHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999889998988665543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=108.08 Aligned_cols=174 Identities=16% Similarity=0.015 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHH-HHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGG-VTNFAPLLGAFISDTYIGRFKTITFASIAAILG 97 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~ 97 (575)
++..+...++...+.....++.++|+.+ +|++.++.+.+...... ...++.+++|++.||+ |+|+.+..+..+..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 3444445555556666677788888875 79999999999888765 5667789999999995 9999998877665333
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCC-CCcccccchhhh
Q 008158 98 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA-TTDEGVKGINSF 176 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~ 176 (575)
.+........+. ......+.....+.+++.+...+...+...+..++ +. +++.
T Consensus 288 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~ 341 (390)
T TIGR02718 288 ALLWFAQAAFWL--------------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTD 341 (390)
T ss_pred HHHHHHHHHccc--------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHH
Confidence 332221111000 00222333444455666666666677777777665 44 8999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHH
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 220 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~ 220 (575)
++..+...++|..+||.++|++.+..||+..|++.+++.+++++
T Consensus 342 ~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 342 VTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988999999877766555544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.4e-09 Score=109.79 Aligned_cols=145 Identities=12% Similarity=0.024 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008158 34 IGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPP 113 (575)
Q Consensus 34 ~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 113 (575)
+.+..+++.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ |||+++..+.++..+..+.......
T Consensus 248 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~------- 318 (426)
T PRK12307 248 WPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ------- 318 (426)
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 3456678888875 699999999999999999999999999999995 9999998888776655544433210
Q ss_pred CCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhh
Q 008158 114 KCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQT 193 (575)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~ 193 (575)
.....+....+..+.+..+..+..+.++.|.+|++. |++++++.+...++|..++|.
T Consensus 319 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~ 375 (426)
T PRK12307 319 -----------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSM 375 (426)
T ss_pred -----------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHH
Confidence 011111122222223333344556778899999877 999999999999999999999
Q ss_pred hhhhccccccchhHhHH
Q 008158 194 VLVYIQDSVSWVIGFGI 210 (575)
Q Consensus 194 v~~~l~~~~gw~~~f~~ 210 (575)
+.|++.+..|+....++
T Consensus 376 ~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 376 AATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHHHHcccHHHHHHH
Confidence 99999988887654433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.1e-09 Score=99.45 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=128.2
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHH-
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFAS- 91 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~- 91 (575)
+...+..+++++.+.+--++++=..+.-+.+.++.+|+|..+++.+.+.........+++.|.++||+ ||+...+.+.
T Consensus 260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~ 338 (459)
T KOG4686|consen 260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASAC 338 (459)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHH
Confidence 34456667777666666566555666678899999999999999999999999999999999999997 9997655544
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 92 IAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
+++.++..+..++.. .=+++..+.|+..........+.++...|+++
T Consensus 339 ~~tl~~H~~l~Ft~l----------------------------sPy~~m~~lGLsysllAcslWP~va~~vpE~q----- 385 (459)
T KOG4686|consen 339 ILTLLGHSGLFFTFL----------------------------SPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ----- 385 (459)
T ss_pred HHHHHHhhhHHhhhc----------------------------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH-----
Confidence 456667777776432 12556666777776666666777788888877
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhcccccc---chhHhHHHHHH
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQDSVS---WVIGFGIPTVL 214 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~g---w~~~f~~~~~~ 214 (575)
.|++++..+...|+|..+.|++.|.+.+.-| |--.|++....
T Consensus 386 -LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 386 -LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred -hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence 9999999999999999999999999987654 55566554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.1e-09 Score=109.10 Aligned_cols=160 Identities=15% Similarity=0.099 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH--HHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI--AAIL 96 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~--l~~~ 96 (575)
.+.+....++.....+++..+++.|+.+.+|++..+.+.+...+.++..++.++.|+++||..+||+....... +..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 297 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV 297 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 34444555566666677788899999999999999999999999999999999999999984233433222111 1112
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
+........ ..+.....+..++.|+...+..+....+..|.+|+++ |+++
T Consensus 298 ~~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 347 (379)
T TIGR00881 298 SLLVYWLNP------------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTA 347 (379)
T ss_pred HHHHHhcCc------------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHH
Confidence 211111100 0123344555566676655656666778899999877 9999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccccccchhHh
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQDSVSWVIGF 208 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f 208 (575)
.++++...++|..++|.+.|++.+.+||++.|
T Consensus 348 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 348 AGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999998765
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.94 E-value=8e-09 Score=108.52 Aligned_cols=145 Identities=10% Similarity=0.010 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008158 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGML 99 (575)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~ 99 (575)
....+..++....++.+..+++ ++.+++|.+..+.+.+.....++..++.+++|+++||+ |||+.+.......+.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 330 (398)
T TIGR00895 253 VLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAVL 330 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHH
Confidence 3334444555556666666666 77778999999999999999999999999999999995 999555444333333322
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHH
Q 008158 100 TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 179 (575)
...... +...+++..++.|++.++..+...++..|.+|+++ |++.+++
T Consensus 331 ~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~ 378 (398)
T TIGR00895 331 VGSTLF--------------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGW 378 (398)
T ss_pred HHHHhh--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHH
Confidence 222111 34456677788899999999999999999999877 9999999
Q ss_pred HHHHHHHHHHHHhhhhhhc
Q 008158 180 YYTTFTVVILITQTVLVYI 198 (575)
Q Consensus 180 ~~~~~~ig~~~~~~v~~~l 198 (575)
++....+|..+||.++|++
T Consensus 379 ~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 379 AIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999875
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=107.46 Aligned_cols=154 Identities=8% Similarity=0.085 Sum_probs=116.4
Q ss_pred hhHHHHHHHHhhhh---CCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008158 35 GLLANFMVYLLKEY---HMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLH 111 (575)
Q Consensus 35 ~~~~~l~~yl~~~l---~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~ 111 (575)
......+.|+.+.+ +.+....+.+.++..+...++.++.|++.||+ |||+.+.++.++..++......+.
T Consensus 233 ~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~~~~~~~------ 305 (396)
T TIGR00882 233 VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRIIGSSFAT------ 305 (396)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhcC------
Confidence 34456778887765 45566778888888888888999999999995 999999999888888777666543
Q ss_pred CCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHH-HHHHHHHHHHH
Q 008158 112 PPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW-YYTTFTVVILI 190 (575)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~ 190 (575)
+.+.+++.+++.|++.+........+..+..+++. ++...+. ++....+|..+
T Consensus 306 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~~~~~lg~~~ 359 (396)
T TIGR00882 306 --------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQFAKQLAMIF 359 (396)
T ss_pred --------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHHHHHHHHHHH
Confidence 44556777888888876655555556666666544 5665655 56778999999
Q ss_pred HhhhhhhccccccchhHhHHHHHHHHHHHHH
Q 008158 191 TQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 191 ~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~ 221 (575)
++.++|++.+..||+..|.+.+++..+..++
T Consensus 360 ~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 360 LSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 9999999999899999999877665554443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-08 Score=111.17 Aligned_cols=165 Identities=15% Similarity=0.042 Sum_probs=106.5
Q ss_pred HHHHHHhhhhHHHHHHHHhhhhCCChhhHHH------------HHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 008158 27 TFERLATIGLLANFMVYLLKEYHMNQTSAAN------------ILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAA 94 (575)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~------------i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~ 94 (575)
++..+.+|++..+.|.+++ ++|++..+.+. ...+..++..++.+++++++||+ |||++++.+..+.
T Consensus 298 ~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~~ 375 (502)
T TIGR00887 298 FLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFFIL 375 (502)
T ss_pred HHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHHH
Confidence 3344567777777777774 67886543221 12233345556778899999995 9999998888877
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchh
Q 008158 95 ILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 174 (575)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 174 (575)
.++.++.++..... . ....+....+...++..+..+....+.+|.+|++. |+
T Consensus 376 ~~~~~~l~~~~~~~---------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~ 427 (502)
T TIGR00887 376 TVLFFVLGFAYNHL---------------------S-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RS 427 (502)
T ss_pred HHHHHHHHHHHHhc---------------------c-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HH
Confidence 77766665532100 0 11111111122222233344566777899999987 99
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhcccc----------ccchhHhHHHHHHHHHHHHH
Q 008158 175 SFFNWYYTTFTVVILITQTVLVYIQDS----------VSWVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 175 ~~~~~~~~~~~ig~~~~~~v~~~l~~~----------~gw~~~f~~~~~~~~i~~~~ 221 (575)
++.++.+....+|++++|.+.+++.+. .++...|++.+++.+++.+.
T Consensus 428 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 428 TAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988763 34455666665555554443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-08 Score=106.53 Aligned_cols=177 Identities=12% Similarity=0.005 Sum_probs=120.1
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHH--------H
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTI--------T 88 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~--------~ 88 (575)
+.++.+....++....++...+++|.|+.+.+|++..+.++..++..++..++.+++|+++||+ ++|+.. .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence 3455666777788888888899999999999999999999999999999999999999999995 654321 1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcc
Q 008158 89 FASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDE 168 (575)
Q Consensus 89 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 168 (575)
.+..+...+......... . .+....++...+.+.+.++..+.......|..|+ .
T Consensus 340 ~~~~~~~~~~~~~~~~~~-~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-- 393 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPYL-S----------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F-- 393 (465)
T ss_pred HHHHHHHHHHHHHHHHHc-C----------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H--
Confidence 111111111111111110 0 0222333444444555555555544445565553 3
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhhhhhhccccc---cchhHhHHHHHHHHHHHHHHHh
Q 008158 169 GVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV---SWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 169 ~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~---gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
++...++.+...++|+.++|.+.|++.+.. +|+.+|.+.++..+++.++...
T Consensus 394 ----~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 394 ----LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 899999999999999999999999987642 4888888877776666655443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=108.07 Aligned_cols=164 Identities=15% Similarity=0.067 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHH-hhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008158 22 ILGNETFERLATIGLLANFMVYL-LKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLT 100 (575)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~ 100 (575)
.+...++.....++...+++.|+ ++.+|+++.+.+.....+.++..++.+++|++.||+ |||+++..+..+..++..+
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~ 341 (438)
T PRK10133 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI 341 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence 33344444455566677888896 567899999999999999999999999999999995 9999998887777666555
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHH
Q 008158 101 VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWY 180 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 180 (575)
..+.. +. ..+....+.|+|.+...|...+...+.+|++. +.+.++.
T Consensus 342 ~~~~~--------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~ 387 (438)
T PRK10133 342 SAFAG--------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFI 387 (438)
T ss_pred HHHcC--------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHH
Confidence 54432 11 12455677899999999999999999987633 3444444
Q ss_pred HHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHH
Q 008158 181 YTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 181 ~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~ 221 (575)
.. ..+|+.++|.+.|++.+..| -+..|+++.++.+..+..
T Consensus 388 ~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 388 VM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred hH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 33 34678888889999988887 788888776655544443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=109.78 Aligned_cols=168 Identities=12% Similarity=0.063 Sum_probs=140.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 008158 23 LGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVT 102 (575)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~ 102 (575)
+...++..+....+...+|.+.++.+|.+....|++.+.+++|..++.++.+++.+| +++++.+..+.+++.++.+..+
T Consensus 224 l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~la 302 (524)
T PF05977_consen 224 LLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLA 302 (524)
T ss_pred HHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHh
Confidence 333344444444566678888899999999999999999999999999999999999 4999999889888888888888
Q ss_pred HHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHH
Q 008158 103 LTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYT 182 (575)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 182 (575)
++. +.+..++..++.|++.........+.+-+..|++. ||+.+++++.
T Consensus 303 l~~--------------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~ 350 (524)
T PF05977_consen 303 LSP--------------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQM 350 (524)
T ss_pred cch--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHH
Confidence 765 56667778888899888888888888888899887 9999999999
Q ss_pred HHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 183 TFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 183 ~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
....+..+|..+.|++.+.+|-+..+.+.++..+++.++.+
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999898877766555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=104.86 Aligned_cols=172 Identities=14% Similarity=0.099 Sum_probs=138.9
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008158 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILG 97 (575)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~ 97 (575)
...+.+...++-+=+.-++.+.-..|...++|++..+..++.....+...++++++|+|.|| +|.|+++..++++..+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHH
Confidence 44444555555555556677788899999999999999999999999999999999999999 59999999999998887
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhh
Q 008158 98 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 177 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 177 (575)
.+..-+.. ....+.+.-.+.|...|+.++.+-++.++..|+++ -++++
T Consensus 332 ~~~~~~~~--------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fF 379 (438)
T COG2270 332 ALYLIFLE--------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFF 379 (438)
T ss_pred HHHHHHcc--------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------cccee
Confidence 77766643 22335666678899999999999999999999988 79999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHHH
Q 008158 178 NWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 178 ~~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~~ 222 (575)
++|......++.+||.+.+.+.+..| -|..+..-+++..+++++.
T Consensus 380 glyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 380 GLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 99999999999999999988876543 5666665555555555543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.2e-08 Score=102.70 Aligned_cols=165 Identities=7% Similarity=-0.041 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
++..++..++.....++..+++++++.+++|++..+.+.+...+.++..++.++.|++.||. +| +.+..+..+..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~-~~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VK-LALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ch-hHHHHHHHHHHHHH
Confidence 33333444444455566667776666678899999999999999999999999999999994 54 44444444433333
Q ss_pred HHH-HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhh
Q 008158 99 LTV-TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 177 (575)
Q Consensus 99 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 177 (575)
+.. ...+ +.+.+.+..++.|++.+...+..++++.+..|+ + +++..
T Consensus 296 ~~l~~~~~--------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~ 342 (394)
T PRK10213 296 LVLTLWGS--------------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAG 342 (394)
T ss_pred HHHHHHhh--------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHH
Confidence 333 3322 345566777888999999888888888888874 3 45666
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHH
Q 008158 178 NWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGA 218 (575)
Q Consensus 178 ~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~ 218 (575)
+.++...++|..+|+.++|++.+..|++..++..+...++.
T Consensus 343 ~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 343 SIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 77777789999999999999999899988888766544433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=111.45 Aligned_cols=156 Identities=12% Similarity=0.025 Sum_probs=125.6
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
|.+.......++....+++....++.|+++.+|.+..+.+++.....++..++.+++|++.||+ |||+.+..+..+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence 3344445566666677788888899999999999999999999999999999999999999995 999999999888888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
+..+..+... + ..+.+.+....++.|+|.+...+.......+..|+++ |+.+
T Consensus 334 ~~~~~~~~~~-~---------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~ 385 (485)
T TIGR00711 334 GFYWRAFTFT-P---------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARG 385 (485)
T ss_pred HHHHHhccCC-C---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHH
Confidence 8777663211 0 1134455666778899998887777777778888776 9999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhcccc
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQDS 201 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~~ 201 (575)
.++++...++|..+|+.+.+.+.+.
T Consensus 386 ~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 386 SSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=104.56 Aligned_cols=151 Identities=9% Similarity=0.018 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008158 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGML 99 (575)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~ 99 (575)
+......++....+++...+++.|+++ .|++..+.+.+.+...++..++.++.|+++||+-+||+.+..+.++..++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 278 (355)
T TIGR00896 200 WQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLC 278 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 333344445556667778889999875 7999999999999999999999999999999941466677777777777776
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHH
Q 008158 100 TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 179 (575)
.+.+..+ +.. ....++.|++.+...+...+...+..++++ +++...++
T Consensus 279 ~~~~~~~-------------------------~~~--~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~ 326 (355)
T TIGR00896 279 GLLFAPM-------------------------HGL--WAWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAM 326 (355)
T ss_pred HHHHhhh-------------------------hHH--HHHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHH
Confidence 6665431 111 123467899999988887777776655432 37888888
Q ss_pred HHHHHHHHHHHHhhhhhhcccccc
Q 008158 180 YYTTFTVVILITQTVLVYIQDSVS 203 (575)
Q Consensus 180 ~~~~~~ig~~~~~~v~~~l~~~~g 203 (575)
.+...++|..++|.+.|++.+..|
T Consensus 327 ~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 327 AQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888999999999999988765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.1e-08 Score=101.14 Aligned_cols=155 Identities=10% Similarity=0.116 Sum_probs=112.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 008158 25 NETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLT 104 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~ 104 (575)
...+.....+......+.|+++++|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..++.++....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 292 (385)
T TIGR00710 214 IYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLEIT 292 (385)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566667778888889999999999999999999999999999999995 99999988888877777666554
Q ss_pred hhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHH
Q 008158 105 AWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 184 (575)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (575)
...+ ......++...++.|+|.+...+.......|..| ++ |++..++++...
T Consensus 293 ~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~ 344 (385)
T TIGR00710 293 AILG---------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTLR 344 (385)
T ss_pred HHhc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHHH
Confidence 3100 0123345555677889989888888888888876 34 788999888776
Q ss_pred HH-HHHHHhhhhhhccccccchhHhH
Q 008158 185 TV-VILITQTVLVYIQDSVSWVIGFG 209 (575)
Q Consensus 185 ~i-g~~~~~~v~~~l~~~~gw~~~f~ 209 (575)
.. |++.++. .+.+.+..+|...+.
T Consensus 345 ~~~g~i~~~~-~~~~~~~~~~~~~~~ 369 (385)
T TIGR00710 345 LVLGAIVGYL-VSLIHGNTAWPMSLS 369 (385)
T ss_pred HHHHHHHHHH-HHhccccChHHHHHH
Confidence 54 5555554 445555555554444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=107.07 Aligned_cols=172 Identities=11% Similarity=0.050 Sum_probs=123.9
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhh--hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 18 AMPYILGNETFERLATIGLLANFMVYLLK--EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
..+......++..+........++.|+.. +.+.+....+.+.....+......++.|++.||+ ++|+.+..+..+..
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~ 285 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV 285 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence 33444444455444444444566666653 3455666677777777777777778889999995 99999998888888
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
++.....++.+ +.+.+.+...+.++|.+...|....++.+..|++. |++
T Consensus 286 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~ 334 (395)
T PRK10054 286 IGLVGFIFSGN-------------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KAS 334 (395)
T ss_pred HHHHHHHHcch-------------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------cee
Confidence 88776665321 34456677888999998888888888999998876 788
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHH
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~ 222 (575)
.++... ...+|..+||.++|++.+..|....|++.+.+..++.++.
T Consensus 335 ~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 335 YFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred hHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 887654 5668999999999999999988888876555544444433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.8e-08 Score=103.08 Aligned_cols=154 Identities=13% Similarity=0.190 Sum_probs=106.9
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHH-HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 008158 38 ANFMVYLLKEYHMNQTSAANILNIWG-GVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCD 116 (575)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~-~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (575)
...++++.+++|++.++.+++..... ++..++.+++|++.||+ |||+.+..+.++..+..+........+
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~-------- 300 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP-------- 300 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 44556778889999999999887655 45788899999999995 999988777776665544432211100
Q ss_pred CCCCCCCccCCCcchhhHHHHHHH----HHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHh
Q 008158 117 VAKPPFGQCKSANSMQLGVLVMGL----GLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQ 192 (575)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~ 192 (575)
.+.+.+.+.. +..|++.+...+....++.+.+|+++ .+.+....++|..+++
T Consensus 301 --------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~ 356 (402)
T PRK11902 301 --------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----------YALLSALASVGRVYVG 356 (402)
T ss_pred --------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----------HHHHHHHHHHHHHHHH
Confidence 0223333333 34566677777777888888877533 3444445567777667
Q ss_pred hhhhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 193 TVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 193 ~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
.++|++.+..||+..|.+.+++.++++++.+.
T Consensus 357 ~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 357 PTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999888777776655543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=108.78 Aligned_cols=152 Identities=9% Similarity=-0.055 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
........++....+++...+++.|+++.+|.|+.+++.......++..++.+++|++.||+ |||+.+..+.++..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~ 339 (495)
T PRK14995 261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSF 339 (495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 34444556666667777788899999999999999999999999999999999999999995 99999988888888777
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
++...... ..+.+...+..++.|+|.|...+.......+..|+++ ++.+.+
T Consensus 340 ~~l~~~~~-----------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~ 390 (495)
T PRK14995 340 YGLAMTDF-----------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGA 390 (495)
T ss_pred HHHHHhcC-----------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHH
Confidence 66654321 0133445667788899999988888888888888877 999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccc
Q 008158 179 WYYTTFTVVILITQTVLVYIQD 200 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~ 200 (575)
.++...++|..+|+.+.|.+.+
T Consensus 391 ~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 391 IETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888754
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.5e-08 Score=105.53 Aligned_cols=163 Identities=14% Similarity=0.083 Sum_probs=119.2
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
|.+.......++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..+
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 3344444555555566555556666777778887665555544444566778899999999995 999999999988888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCc-ccccchhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD-EGVKGINS 175 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~ 175 (575)
+.+...+.. ..+.+.+++..++.|+|.+...+...++.+|..|.++. .++++++.
T Consensus 307 ~~~~~~~~~------------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~ 362 (448)
T PRK09848 307 GYLLFFWVS------------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGL 362 (448)
T ss_pred HHHHHHHcC------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhH
Confidence 877666532 11445566777888999999999999999998876542 23345688
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccccccc
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSVSW 204 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~gw 204 (575)
.++.+++...+|..+|+.+.+++.+..||
T Consensus 363 ~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 363 TYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999988877554444
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.9e-08 Score=117.57 Aligned_cols=156 Identities=11% Similarity=0.043 Sum_probs=124.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhCCChh-hHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 008158 25 NETFERLATIGLLANFMVYLLKEYHMNQT-SAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTL 103 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~-~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~ 103 (575)
..++.....+....+++.|+.+.+|++.. +.+++.+...++..++.+++|+++||+ ++++++.++.++..++.++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~ 318 (1146)
T PRK08633 240 GLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSLFLLPT 318 (1146)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHHHHHHH
Confidence 33344444455677889999999999998 999999999999999999999999995 9999888888888777777665
Q ss_pred HhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHH
Q 008158 104 TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTT 183 (575)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (575)
.. +.+.+++..++.|++.++..+...+++.+..|++. |++++++.++.
T Consensus 319 ~~--------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~ 366 (1146)
T PRK08633 319 AP--------------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFL 366 (1146)
T ss_pred hh--------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHH
Confidence 43 45566777888999999988888999999999877 99999999999
Q ss_pred HHHHHHHHhhhhhhccc-cccchhHhHHHHH
Q 008158 184 FTVVILITQTVLVYIQD-SVSWVIGFGIPTV 213 (575)
Q Consensus 184 ~~ig~~~~~~v~~~l~~-~~gw~~~f~~~~~ 213 (575)
.++|.++++.+++.+.. .+++...|++.+.
T Consensus 367 ~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 367 QNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999888877776643 2345555554433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-08 Score=102.52 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=110.3
Q ss_pred hHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008158 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKC 115 (575)
Q Consensus 36 ~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (575)
....+|.|+++..| ++.+.+++.+...++...+..+.+++.||+++.++.+..+.++..++....+.++
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------- 295 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------- 295 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------
Confidence 34567788876655 6788888888877766655555566666544767777778777777777666554
Q ss_pred CCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhh
Q 008158 116 DVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL 195 (575)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~ 195 (575)
+...+.+..++.++|.+...|...++..|..|+++ |++.+++++...++|..+||.++
T Consensus 296 ----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~ 353 (400)
T PRK11646 296 ----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGG 353 (400)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccch
Confidence 34445666677888888888888999999999877 99999999999999999999999
Q ss_pred hhccccc---c-chhHhHHHHHHHHHHHH
Q 008158 196 VYIQDSV---S-WVIGFGIPTVLMIGAII 220 (575)
Q Consensus 196 ~~l~~~~---g-w~~~f~~~~~~~~i~~~ 220 (575)
|++.+.. + ....++...++.++..+
T Consensus 354 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (400)
T PRK11646 354 GWLFDLGKALNQPELPWMMLGIIGLITLL 382 (400)
T ss_pred HHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 9998753 2 23444444444444433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=101.88 Aligned_cols=162 Identities=14% Similarity=0.069 Sum_probs=133.4
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
|....+++..++..++.....+..+.|.+..+|.+ ...+.+..+..+...++.++.++++||+ |+|+++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 55667777888887777766777777777778766 5677788888999999999999999995 999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCc-ccccchhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD-EGVKGINS 175 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~ 175 (575)
+.++..+... .+.+.+++..++.|++.+...+...++++|..+.+|- .++++.|.
T Consensus 303 ~~~~~~~~~~------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~ 358 (428)
T PF13347_consen 303 GFLLLFFLGP------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGM 358 (428)
T ss_pred HHHHHHHHHh------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHH
Confidence 9888877641 1667788899999999999999999999999986542 34566788
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccccccc
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSVSW 204 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~gw 204 (575)
.++.+.....+|..+++.+.+.+.+..|+
T Consensus 359 ~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 359 YFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999988877554443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-08 Score=117.48 Aligned_cols=182 Identities=8% Similarity=-0.065 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
++......++..+..+++.++++.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++..++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~ 305 (1140)
T PRK06814 227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFG 305 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHH
Confidence 44444445555566667788999999999999999999999999999999999999999985 77776665665555554
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
+.+.+... ..... .... ....+... ..+.+.+++..++.|++.+...+...+++.+.+|++. ||++++
T Consensus 306 ~~l~~~~~-~~~~~-~~~~---~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g 373 (1140)
T PRK06814 306 LDLAFASS-SVPAE-PAQL---KSILVFLS-KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIA 373 (1140)
T ss_pred HHHHhccc-ccccc-cccc---cchhhhhc-ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeH
Confidence 44443200 00000 0000 00000000 0144567778888999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccc-cccchhHhHHHHH
Q 008158 179 WYYTTFTVVILITQTVLVYIQD-SVSWVIGFGIPTV 213 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~-~~gw~~~f~~~~~ 213 (575)
..+...++|..+++.+++.+.+ ..++...|++.++
T Consensus 374 ~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 374 ANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999999888863 4566666655444
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-06 Score=89.51 Aligned_cols=152 Identities=20% Similarity=0.159 Sum_probs=107.1
Q ss_pred HhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC
Q 008158 44 LLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFG 123 (575)
Q Consensus 44 l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (575)
+-+++|++..+++.+.........+..++.|.++||+ |||+..+..+++..++.+.--. .
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~-~------------------ 119 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS-S------------------ 119 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc-c------------------
Confidence 3467999999999999999999999999999999995 9999999999988887754322 1
Q ss_pred ccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHH-HHHHHHHHHHhhhhhhccccc
Q 008158 124 QCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY-TTFTVVILITQTVLVYIQDSV 202 (575)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~~~~~v~~~l~~~~ 202 (575)
++..++++|++.|++....+++--+.......++. -.++..+.-++... ....+-++.+..++-++.+..
T Consensus 120 --------~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g-~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~ 190 (354)
T PF05631_consen 120 --------NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRG-FPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF 190 (354)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence 67889999999999999988877776655442221 11122444444333 222233444445555665555
Q ss_pred cc--hhHhHHHHHHHHHHHHHHHh
Q 008158 203 SW--VIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 203 gw--~~~f~~~~~~~~i~~~~~~~ 224 (575)
+. ..+|..++++.+++.++...
T Consensus 191 ~~g~vaPF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 191 GFGPVAPFDAAIVLLAVAAVLILK 214 (354)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHh
Confidence 44 67888777777766665543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-07 Score=99.06 Aligned_cols=159 Identities=10% Similarity=-0.074 Sum_probs=117.9
Q ss_pred HHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008158 31 LATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQL 110 (575)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~ 110 (575)
.........++.|+++.+|.++.+.|.+.....++..++.++.+++.||+ ++|+++..+.. ..+.....++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~----- 291 (393)
T PRK11195 219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH----- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh-----
Confidence 33444556677888889999999999999999999999999999999995 99988877753 333333333322
Q ss_pred CCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHH
Q 008158 111 HPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILI 190 (575)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 190 (575)
+.+...+..++.|++.+...+...+.+.+..|+ + .++++..+..+...++|..+
T Consensus 292 ---------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~-~----~~~g~~~a~~~~~~~~~~~~ 345 (393)
T PRK11195 292 ---------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV-L----VGAGHSIAVQNFNENLAMLL 345 (393)
T ss_pred ---------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc-c----ccchhHHHHHhHHHHHHHHH
Confidence 345556667788999888888778877775443 2 13799999999999999999
Q ss_pred HhhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 191 TQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 191 ~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
+..+.+.+ +..|-+..+.+.+...++.+.+.+
T Consensus 346 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 346 MLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99888866 457777777776655555554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-07 Score=97.95 Aligned_cols=167 Identities=13% Similarity=-0.055 Sum_probs=111.4
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccc---hHHHHH-HHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGR---FKTITF-ASI 92 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr---r~~~~~-~~~ 92 (575)
|..+.+....++....+|++.+++|.|+++ .|++.. .+.......+...++ .++++||. .| |+.... ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence 445666667888888899999999999964 677754 555555555444444 47788874 54 333332 333
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 93 AAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
+..++....+... +....++...+.+++.....+...++.+|.+|++.
T Consensus 266 ~~a~~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------ 313 (368)
T TIGR00903 266 LIAAFFLALAFEL--------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------ 313 (368)
T ss_pred HHHHHHHHHHHcc--------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------
Confidence 3333332333221 12223444455667777777778889999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 173 INSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
|+++.++.+...++|+..+|.+.+.+.. +.+..|.+.++..+++.+..+
T Consensus 314 rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 314 HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887763 666777766666555555543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.1e-07 Score=99.46 Aligned_cols=185 Identities=14% Similarity=0.020 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008158 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILG 97 (575)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~ 97 (575)
..+++....++..-.+.+...++|.|+++.++ ..+......+..+...+..+++|+++|| +|+||++.++.++..++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHH
Confidence 34444444455444444566688899887663 3333333444567788899999999999 59999999998877777
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCc----------
Q 008158 98 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD---------- 167 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~---------- 167 (575)
........ |. .+..+...+.+..+...++.|.-......++.+.+|+++.
T Consensus 330 ~~~~~l~l--p~------------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~ 389 (462)
T PRK15034 330 SALLFLTL--PG------------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSD 389 (462)
T ss_pred HHHHHHHh--cc------------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccch
Confidence 65443322 11 0011344455544444444444455556666666663100
Q ss_pred -----ccccchhhhhHHHHHHHHHHHHHHhhhhhhccccc-cchhHhHHHHHHHHHHHHHHHhc
Q 008158 168 -----EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSV-SWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 168 -----~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
..+++-+...++......+|+++.|.+.|+..+.. ++...|+...+..++++++.+..
T Consensus 390 ~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 390 EQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 01124677888888888888888897777765543 47778887777777777665553
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-07 Score=99.06 Aligned_cols=143 Identities=13% Similarity=0.030 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHH-HHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWG-GVTNFAPLLGAFISDTYIGRFKTITFASIAAILG 97 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~-~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~ 97 (575)
.+.++...++...+++...+.++.|+++ +|++..+.+.+..+.. ++..++.+++|+++||+ |||+.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 4444555566677778888999999987 9999999998888766 56788999999999995 9999988888887776
Q ss_pred HHHHHHHh-hcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 98 MLTVTLTA-WLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 98 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
.....+.. +... .. . +..+.+.+....++.+++.+...+...++..|.+|+++ |++.
T Consensus 289 ~~~~~~~~~~~~~-------------~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~ 346 (356)
T TIGR00901 289 NAGFVWLASNGHH-------------DG-I--TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQ 346 (356)
T ss_pred HHHHHHHHhcCcc-------------cc-c--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHH
Confidence 66554431 1000 00 0 00134567777888899999999999999999999988 9999
Q ss_pred hHHHHHHHH
Q 008158 177 FNWYYTTFT 185 (575)
Q Consensus 177 ~~~~~~~~~ 185 (575)
+++++...+
T Consensus 347 ~g~~~~~~~ 355 (356)
T TIGR00901 347 MALLSSLSA 355 (356)
T ss_pred HHHHHHHHh
Confidence 999877654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.2e-08 Score=103.91 Aligned_cols=176 Identities=13% Similarity=0.120 Sum_probs=146.1
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc--chHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIG--RFKTITFASIAA 94 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G--rr~~~~~~~~l~ 94 (575)
+..+.+.....+..++++.-...++.|.. .+++++++++.+.++..+...++.++.|+++|+. . ++.++.++.+..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 34555556777777777777777777777 8999999999999999999999999999999995 7 334666666666
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchh
Q 008158 95 ILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 174 (575)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 174 (575)
.++...+++.. +++.++..-.+.|+..|.+.+.....+.|..+.++ ..
T Consensus 376 gl~~~~~p~~~--------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~ 423 (509)
T KOG2504|consen 376 GLARLFLPFAT--------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LS 423 (509)
T ss_pred HHHHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cc
Confidence 66666666655 56778888899999999999988889999999877 89
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHHHHhcc
Q 008158 175 SFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGK 226 (575)
Q Consensus 175 ~~~~~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~ 226 (575)
.++++......++.++||.+.|++.+..+ |...|+..+++.+++...+++..
T Consensus 424 ~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 424 NAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999999999887 99999988887777776665554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-07 Score=96.76 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=59.5
Q ss_pred hhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 008158 35 GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTA 105 (575)
Q Consensus 35 ~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~ 105 (575)
......+.|+.+++|++..+.+.+.....++..++.++.|++.||+ |||+++..+..+..++.+...+..
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~ 290 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP 290 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788889999999999999999999999999999999995 999999999988888877776653
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.2e-07 Score=93.51 Aligned_cols=142 Identities=9% Similarity=0.056 Sum_probs=94.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 008158 25 NETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLT 104 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~ 104 (575)
..++...+.+......+.++.+.+|+++.+.+.+.....++..++.+++|++.||+ |||+++..+..+..+..+.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 280 (377)
T PRK11102 202 ASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLVVS 280 (377)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566667788888999999999999999999999999999999995 99999988887655443333222
Q ss_pred hhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHH
Q 008158 105 AWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF 184 (575)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (575)
...+ .+.+...++..+.+.+.+...+.....+.|..| ++ +++..+......
T Consensus 281 ~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~ 331 (377)
T PRK11102 281 ALLD----------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLR 331 (377)
T ss_pred HHHh----------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHH
Confidence 1100 023334444444455555555555666777766 44 777887765543
Q ss_pred -HHHHHHHhhhhh
Q 008158 185 -TVVILITQTVLV 196 (575)
Q Consensus 185 -~ig~~~~~~v~~ 196 (575)
.+|+.+++.+++
T Consensus 332 ~~~g~~~g~~~~~ 344 (377)
T PRK11102 332 FGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHh
Confidence 467777776654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=104.29 Aligned_cols=133 Identities=17% Similarity=0.051 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHH
Q 008158 59 LNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVM 138 (575)
Q Consensus 59 ~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (575)
.....+....+.++++++.||+ |||+++..+.++..++.+...+..+ . ......+
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~-----------------------~-~~~~~~~ 415 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV-----------------------D-LYFLRTA 415 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC-----------------------C-chHHHHH
Confidence 3444566677888999999995 9999999998888887776665431 0 1123344
Q ss_pred HHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHH
Q 008158 139 GLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGA 218 (575)
Q Consensus 139 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~ 218 (575)
..++.+++.+...+..+.+.+|.+|++. |+.++++.+....+|++++|.+.+ +.+ .++...+++.+++.+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHHHHHHHH
Confidence 4455666666667788899999999877 999999999999999999999988 443 55666776666555555
Q ss_pred HHHHHh
Q 008158 219 IILFLV 224 (575)
Q Consensus 219 ~~~~~~ 224 (575)
.++.++
T Consensus 488 ~~~~~~ 493 (505)
T TIGR00898 488 GILTLF 493 (505)
T ss_pred HHHHHc
Confidence 554444
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9e-07 Score=93.22 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=90.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHH
Q 008158 406 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS 485 (575)
Q Consensus 406 ~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g 485 (575)
.+.+.+.+|+....+=++.+..+ .++|..+|.-++.|+..+.++.+..+|+...+||+.|.++++
T Consensus 434 GHv~v~~lgLa~~~~Rf~~~S~L---------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~ 498 (618)
T KOG3762|consen 434 GHVNVMYLGLACNVGRFLYYSYL---------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQG 498 (618)
T ss_pred cccceeeehhhHHHHHHHHHHHh---------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHH
Confidence 34445777877777777777766 478888888899999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008158 486 LLFC-SFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRY 554 (575)
Q Consensus 486 ~~~~-~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~~ 554 (575)
+... ...+|-.+|+.+.+.+...+ +..-.|..+++.+++.++.+..+-+..++
T Consensus 499 l~~g~f~GlG~g~GslIGG~~v~~f----------------g~~ttf~~~giAcl~~l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 499 LLQGIFHGLGKGLGSLIGGFVVERF----------------GARTTFRIFGIACLVTLALFISIQLLLKR 552 (618)
T ss_pred HHHHHhcccCcchhhhhhhhhheee----------------hhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9884 56688899998888776543 23456777777777776666655443333
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-05 Score=83.65 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHH
Q 008158 59 LNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVM 138 (575)
Q Consensus 59 ~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (575)
.++......+..++++.+.|+ +|.|..+.++...+..-....-.. |.+.+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~---------------------------N~y~~yf 107 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP---------------------------NSYYLYF 107 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc---------------------------chHHHHH
Confidence 777778888999999999999 599999999999988776666553 5577899
Q ss_pred HHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhh
Q 008158 139 GLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL 195 (575)
Q Consensus 139 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~ 195 (575)
.-++.|+|.+..+..--.+.++...+++ +.+..++.....+.+.++|..+.
T Consensus 108 ssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 108 SSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred HHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence 9999999999999998999998887766 77777777777777777775443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=96.27 Aligned_cols=141 Identities=21% Similarity=0.238 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhCCC-hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008158 22 ILGNETFERLATIGLLANFMVYLLKEYHMN-QTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLT 100 (575)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~ 100 (575)
.+...++....++....+++.|+.+.+|++ ..+.+.+.+...+...++.++.|+++||+ |+|+..........++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 289 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG 289 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence 344444445566678888999999999999 79999999999999999999999999995 9988887777777776666
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHH
Q 008158 101 VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWY 180 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 180 (575)
..+... ..+....++..++.|++.+...+...++..|.+|+++ |+++.+.+
T Consensus 290 ~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~ 340 (352)
T PF07690_consen 290 LLLLPF-----------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLF 340 (352)
T ss_dssp HCCSHH-----------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHH
T ss_pred HHHHHH-----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHH
Confidence 655432 1144556667788999999999999999999999877 99999999
Q ss_pred HHHHHHHHHHHh
Q 008158 181 YTTFTVVILITQ 192 (575)
Q Consensus 181 ~~~~~ig~~~~~ 192 (575)
+...++|..+||
T Consensus 341 ~~~~~~~~~igP 352 (352)
T PF07690_consen 341 NSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC
Confidence 999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.4e-07 Score=97.34 Aligned_cols=165 Identities=13% Similarity=0.050 Sum_probs=115.1
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
|.+..++...++.....+...+..+ |..+...-+....+.+.....++..++.++.++++||+ |||+++..+.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~-y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAI-YYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhee-eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 4444555555556555444444444 44433333555666677766788888999999999995 999999988887776
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCC-cccccchhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT-DEGVKGINS 175 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~ 175 (575)
+.+...+....+ ..+.+.+++.-++.|++.+...+...++++|..+.++ +.++++.|.
T Consensus 309 ~~~~~~~~~~~~---------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~ 367 (473)
T PRK10429 309 SCGVLLLMGLAA---------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESI 367 (473)
T ss_pred HHHHHHHHhccC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhH
Confidence 665554321000 1144556666778899999999999999999987543 344456677
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccccccc
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSVSW 204 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~gw 204 (575)
.++...+...+|..+++.+.|++.+..|+
T Consensus 368 ~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 368 AYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999888765554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-06 Score=90.16 Aligned_cols=145 Identities=9% Similarity=0.032 Sum_probs=103.8
Q ss_pred HHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008158 31 LATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQL 110 (575)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~ 110 (575)
..++......+.|++ ++|++..+.+.......++..++.++++++.||+ |+|+.+.....+..++.+........+
T Consensus 217 ~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 292 (401)
T PRK11043 217 AAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLS-- 292 (401)
T ss_pred HHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 444555666777775 5899999999988888888899999999999995 999987666665555544433221100
Q ss_pred CCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHH
Q 008158 111 HPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILI 190 (575)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~ 190 (575)
..+...+++...+.|++.+...+.......|..|+ + ++++.++++.....++..
T Consensus 293 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~~~~~ 346 (401)
T PRK11043 293 -------------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQLGLCFL 346 (401)
T ss_pred -------------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHHHHHHH
Confidence 00233445556677888888888887777777653 4 899999999888888888
Q ss_pred Hhhhhhhccccccch
Q 008158 191 TQTVLVYIQDSVSWV 205 (575)
Q Consensus 191 ~~~v~~~l~~~~gw~ 205 (575)
++.+.+.+.+.....
T Consensus 347 ~~~~~g~l~~~~~~~ 361 (401)
T PRK11043 347 ASLLVSALISTPLLT 361 (401)
T ss_pred HHHHHHHccCCChhH
Confidence 888888887643333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=86.97 Aligned_cols=163 Identities=12% Similarity=0.131 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008158 20 PYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGML 99 (575)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~ 99 (575)
+.+...--+.++.+|.+..++|.++. +.|+|..++|++.+...+......+..-.+++|.-.+|+.......++.+|.+
T Consensus 211 W~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~ 289 (395)
T COG2807 211 WQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLV 289 (395)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 33334444567888999999999987 78999999999999999999999999999999865788888888888999998
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHH
Q 008158 100 TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 179 (575)
.+.+... +.. +...++.|+|.|+.+|....++.+..++.+ .-++..+.
T Consensus 290 G~~~~P~-------------------------~~~--~lw~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~LSgm 337 (395)
T COG2807 290 GLLLAPG-------------------------QLP--ILWALLLGLGQGGAFPLALTLILLRSSDAA-----IAAALSGM 337 (395)
T ss_pred HHHHhhh-------------------------hHH--HHHHHHHhCccchHHHHHHHHHHhhcCChH-----HHHHHHHH
Confidence 8887642 222 222588999999999999999999887644 36677777
Q ss_pred HHHHHHHHHHHHhhhhhhccccc-cchhHhHHHHHHH
Q 008158 180 YYTTFTVVILITQTVLVYIQDSV-SWVIGFGIPTVLM 215 (575)
Q Consensus 180 ~~~~~~ig~~~~~~v~~~l~~~~-gw~~~f~~~~~~~ 215 (575)
-+-...+=+.+||.+.|++.|.. +|+.....-+...
T Consensus 338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~ 374 (395)
T COG2807 338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT 374 (395)
T ss_pred hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence 77777788889999999998865 5876665444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=94.63 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=100.0
Q ss_pred HHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008158 39 NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVA 118 (575)
Q Consensus 39 ~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (575)
.+..|..+..--++...+.+.....+...++.+++++++||+ |||+.+..+.++.+++.....+..
T Consensus 250 ~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~------------- 315 (444)
T PRK09669 250 GATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFIP------------- 315 (444)
T ss_pred hhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhC-------------
Confidence 344454433222333344455556677778888999999995 999999888776665443333221
Q ss_pred CCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCc-ccccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 008158 119 KPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD-EGVKGINSFFNWYYTTFTVVILITQTVLVY 197 (575)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~ 197 (575)
..+.+.+++..++.|++.+...+...++++|..+.+|. .++++.+..++.+.++..+|..+|+.++|+
T Consensus 316 -----------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 316 -----------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred -----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11455667777889999999999999999999885442 344556778899999999999999999998
Q ss_pred ccccccc
Q 008158 198 IQDSVSW 204 (575)
Q Consensus 198 l~~~~gw 204 (575)
+.+..|+
T Consensus 385 ll~~~Gy 391 (444)
T PRK09669 385 ILAWVDY 391 (444)
T ss_pred HHHHcCC
Confidence 8766665
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=93.20 Aligned_cols=174 Identities=15% Similarity=0.083 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccc--------hHHHHH-
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGR--------FKTITF- 89 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr--------r~~~~~- 89 (575)
++.+....+++..+++.+.+++|.|+.+.+|++..+.|++.++..+.+.+..+++|.++||. -+ ||.+-.
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHHhH
Confidence 55777899999999999999999999999999999999999999999999999999999996 33 233221
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccc
Q 008158 90 ASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 169 (575)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 169 (575)
+...-++..+.+++.. |.. .......+.++..+.|+..+++..+ ..|..|++
T Consensus 339 ~~~~~ai~l~~l~~~~-------------------~~~-~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~apq~---- 390 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTS-------------------DEH-RLLAVILLTIAIGLSGFNISGFYKN----HQDIAPQH---- 390 (466)
T ss_pred HHHHHHHHHHeeeecC-------------------CCc-chHHHHHHHHHHHHcccchhhhHhh----hhhccchH----
Confidence 1112222222222221 000 0112222333333344444443333 22223332
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhhhhhhcccc---ccchhHhHHHHHHHHHHHHHHHh
Q 008158 170 VKGINSFFNWYYTTFTVVILITQTVLVYIQDS---VSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 170 ~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
-+..+++.+...++.++++|.+.+.+... -.|+++|++.+++.+++-+.+.+
T Consensus 391 ---a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 391 ---AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 58999999999999999999999998842 37999999998887777766554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.7e-06 Score=87.64 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=121.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 008158 25 NETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLT 104 (575)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~ 104 (575)
..++...+..-..+.+..|.+-.+|.++.+..........+..++.++...+.+| +|+|+++.++.++.+++.++..+.
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~ 322 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFT 322 (467)
T ss_pred HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhh
Confidence 4555545444444555666666778788888888888888888889999999999 599999999999999999998886
Q ss_pred hhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCC-cccccchhhhhHHHHHH
Q 008158 105 AWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATT-DEGVKGINSFFNWYYTT 183 (575)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~ 183 (575)
. ..+.+++++..++.++|.+...+...++++|..+-+| ..++++-|..++.+...
T Consensus 323 ~------------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~ 378 (467)
T COG2211 323 P------------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFF 378 (467)
T ss_pred c------------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHH
Confidence 4 2267788888999999999999999999999988655 34455667778888888
Q ss_pred HHHHHHHHhhhhhhcccccc
Q 008158 184 FTVVILITQTVLVYIQDSVS 203 (575)
Q Consensus 184 ~~ig~~~~~~v~~~l~~~~g 203 (575)
.=+|..++..+.|++....|
T Consensus 379 ~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 379 RKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 88888888877777654433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-06 Score=73.61 Aligned_cols=131 Identities=14% Similarity=0.239 Sum_probs=91.0
Q ss_pred hhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHH
Q 008158 376 SMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLIL 455 (575)
Q Consensus 376 ~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 455 (575)
..++.++..++.+++ .||.++| +.+..+..+..++.+..... .+.+......++
T Consensus 7 ~~~~~~~~~~~~g~~----~d~~g~~-------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 60 (141)
T TIGR00880 7 YALGQLIYSPLSGLL----TDRFGRK-------PVLLVGLFIFVLSTAMFALS---------------SNITVLIIARFL 60 (141)
T ss_pred ehhHHHHHHhhHHHH----Hhhcchh-------HHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHH
Confidence 334444445543333 6665443 44566666666665554432 244555666788
Q ss_pred HHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHH
Q 008158 456 MGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIA 535 (575)
Q Consensus 456 ~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a 535 (575)
.+++.+...+....++.|.+|++.|+++.++.++...++..+++.+.+.+.+.. +..+.|.+.+
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 124 (141)
T TIGR00880 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------------GWRAPFLFLA 124 (141)
T ss_pred HHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------------chHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999876532 2345677666
Q ss_pred HHHHHHHHHHHHH
Q 008158 536 GLGGLNIVYFLYC 548 (575)
Q Consensus 536 ~i~~v~~i~~~~~ 548 (575)
.+.+++.+..++.
T Consensus 125 ~~~~~~~~~~~~~ 137 (141)
T TIGR00880 125 ILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHHHHhhc
Confidence 6666665555544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-06 Score=90.36 Aligned_cols=162 Identities=14% Similarity=-0.025 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhh-hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHH
Q 008158 21 YILGNETFERLATIGLLANFMVYLLKE-YHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGML 99 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~ 99 (575)
..+...++-.....+..++++.|+.+. .+.+....+...+.+.....++.+++|+++||+ ++|+++.++..+.++..+
T Consensus 236 ~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~l 314 (410)
T TIGR00885 236 EGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCL 314 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence 333344443333345677888998653 244555556667777788899999999999994 999999888888877777
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHH
Q 008158 100 TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW 179 (575)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 179 (575)
+..+.. +. ......++.|++.+.++|...+...+..+++. + ...+.
T Consensus 315 l~~~~~--------------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~-~~s~~ 360 (410)
T TIGR00885 315 GSIFAG--------------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------K-YGAAG 360 (410)
T ss_pred HHHHcC--------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------h-hhHHH
Confidence 776643 11 23566667888888899999999999998644 2 22222
Q ss_pred HHHHHHHHHHHHhhhhhhccccc------cchhHhHHHHHHHHHH
Q 008158 180 YYTTFTVVILITQTVLVYIQDSV------SWVIGFGIPTVLMIGA 218 (575)
Q Consensus 180 ~~~~~~ig~~~~~~v~~~l~~~~------gw~~~f~~~~~~~~i~ 218 (575)
..++ .+|+.+.|.+.|++.|.. +.+..|+++.++.+..
T Consensus 361 l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 361 LVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred HHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 2333 399999999999999843 4788898877765543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-06 Score=88.70 Aligned_cols=180 Identities=11% Similarity=0.028 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008158 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILG 97 (575)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~ 97 (575)
.+...+...++...+.-...++...|+++.-+.+....+.+.+...+.-.+.-.+.+++..|+ |-|+++.++.+..++=
T Consensus 208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVR 286 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 344444555555666666778889998865557777778777777777777778889999995 9999999999998888
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhh
Q 008158 98 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 177 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 177 (575)
..+.+...+ |. ........++-.++|+..|....+...++.+..|++. |+++-
T Consensus 287 ~~l~a~~~~-~~--------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q 339 (400)
T PF03825_consen 287 WLLYAYFSD-PW--------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQ 339 (400)
T ss_pred HHHHHHhcC-Cc--------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHH
Confidence 777777531 00 0012223344567999999999999999999999988 99999
Q ss_pred HHHHHHH-HHHHHHHhhhhhhccccccchh------HhHHHHHHHHHHHHHHHhc
Q 008158 178 NWYYTTF-TVVILITQTVLVYIQDSVSWVI------GFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 178 ~~~~~~~-~ig~~~~~~v~~~l~~~~gw~~------~f~~~~~~~~i~~~~~~~~ 225 (575)
++++... .+|..+|..++|++.+.+|-+. .+.+.+++.++..+++++.
T Consensus 340 ~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 340 GLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9988764 7999999999999998776443 4444555555555554443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.3e-06 Score=85.07 Aligned_cols=148 Identities=12% Similarity=0.033 Sum_probs=102.3
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHHHh-----------------hhhCCChhhHHHH--HHHHHHHHHHHhhhhHH
Q 008158 15 GWKAMPYILGNETFERLATIGLLANFMVYLL-----------------KEYHMNQTSAANI--LNIWGGVTNFAPLLGAF 75 (575)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~-----------------~~l~~~~~~~~~i--~~~~~~~~~~~~~~~G~ 75 (575)
..|.-+.+....|-..+.+|+++-......+ ...+-......-. ..+..+.-+.+.++.|+
T Consensus 324 lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ 403 (528)
T KOG0253|consen 324 LRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGV 403 (528)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHH
Confidence 3344556667888888999987654433322 2111111111111 23344566788899999
Q ss_pred HhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccc
Q 008158 76 ISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSI 155 (575)
Q Consensus 76 laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~ 155 (575)
+.|| +|||+++-.+.+++.+..+.+... ++.+. ...+++.+|+... +.+.+.+
T Consensus 404 iver-lGRKkTMal~l~~f~iflfll~~c---------------------~~rn~-~tvllf~arafis----g~fqvaY 456 (528)
T KOG0253|consen 404 IVER-LGRKKTMALSLILFGIFLFLLTTC---------------------KTRNA-YTVLLFTARAFIS----GAFQVAY 456 (528)
T ss_pred HHHH-hcchhHHHHHHHHHHHHHHHHHHh---------------------cCcch-hHHHHHHHHHHHh----chheEEE
Confidence 9999 599999988888888877776653 33333 2345667777653 3345689
Q ss_pred cccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhh
Q 008158 156 PFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL 195 (575)
Q Consensus 156 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~ 195 (575)
.|--|.+|.+. |+.+.+....+..||+++.|.+.
T Consensus 457 vYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 457 VYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred EecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence 99999999987 99999999999999999999888
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-06 Score=89.93 Aligned_cols=137 Identities=14% Similarity=0.164 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008158 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLT 100 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~ 100 (575)
......++.....+++..+++.|+++.+|+++.+.+.+.....+...++.+++|+++||+ |||+.+..+..+...+...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~ 307 (366)
T TIGR00886 229 ILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGAFL 307 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHHHH
Confidence 333444444455567788899999999999999999999999999999999999999995 9999888877777666665
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHH
Q 008158 101 VTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWY 180 (575)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 180 (575)
..+... +..+....++...+.+++.|...+...++..|..|+ + ++...++.
T Consensus 308 ~~~~~~----------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~g~~ 358 (366)
T TIGR00886 308 VVLGLV----------------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVSGLV 358 (366)
T ss_pred HHhcCC----------------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHHHHH
Confidence 554321 000233344444555555666666677777888763 4 89999988
Q ss_pred HHHHHHH
Q 008158 181 YTTFTVV 187 (575)
Q Consensus 181 ~~~~~ig 187 (575)
+...++|
T Consensus 359 ~~~~~~g 365 (366)
T TIGR00886 359 GAIGNLG 365 (366)
T ss_pred HHhccCC
Confidence 8777665
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-05 Score=84.72 Aligned_cols=184 Identities=13% Similarity=0.087 Sum_probs=123.8
Q ss_pred CCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH
Q 008158 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA 93 (575)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l 93 (575)
..++.+...+...+...+.-..........+-++-|++..++.+++........+..+++.++.||+ |||+.++.+..+
T Consensus 266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~ 344 (485)
T KOG0569|consen 266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSL 344 (485)
T ss_pred chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence 3444455555566666665554555556666678899999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhH-HHHHHHHHHHHh-ccCCccccccccccCCCCCCccccc
Q 008158 94 AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLG-VLVMGLGLLSIG-TGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~l~g~g-~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
+.+..+++.....+... ...... ..+++.++..++ .-+..|...-+.+|.+|++.
T Consensus 345 ~~~~~~~~~~~~~l~~~------------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~----- 401 (485)
T KOG0569|consen 345 MAVALLLMSIALFLSNS------------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA----- 401 (485)
T ss_pred HHHHHHHHHHHHHHHHH------------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc-----
Confidence 88887777665421110 000111 122333333222 22346788889999999988
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
|..+.++-+...-+..++.......+.+.+|= +.|++..+...+..+..+
T Consensus 402 -R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 402 -RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLY 451 (485)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHH
Confidence 99999998888777777766666667776663 445544444333333333
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=92.96 Aligned_cols=186 Identities=8% Similarity=0.014 Sum_probs=129.8
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhh----HHHHHHHHHHHHHHHhhhhH----HHhhhcccchHH--H
Q 008158 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTS----AANILNIWGGVTNFAPLLGA----FISDTYIGRFKT--I 87 (575)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~----~~~i~~~~~~~~~~~~~~~G----~laD~~~Grr~~--~ 87 (575)
.+..+++...+-+..+....+.++.|.++..|.+... .+++.+.-.+...+.+++.. ++.||..+.+.. +
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 3444455555666666667777888887765544222 66777777777777766644 445542122333 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCc
Q 008158 88 TFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD 167 (575)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 167 (575)
.+|.++..++....+++..... .....+.+++++..++.++|.....|...+++++..|++.
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~-----------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~- 414 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFAD-----------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL- 414 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-
Confidence 6788888888777776421110 0112377889999999999999999999999999999877
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhcc
Q 008158 168 EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGK 226 (575)
Q Consensus 168 ~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~ 226 (575)
|++.++.++....+|..+++.+.....+..+|...|...++..++..+++++..
T Consensus 415 -----~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 415 -----MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888766666788777766665555555444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-05 Score=83.32 Aligned_cols=138 Identities=10% Similarity=0.079 Sum_probs=97.9
Q ss_pred HHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 008158 37 LANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCD 116 (575)
Q Consensus 37 ~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (575)
....+.|+++.+|.+..+.+++.....++..++.++.+++.||+ ||+... +.....++.+.........
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~-------- 295 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG-------- 295 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc--------
Confidence 34556788878999999999998888888889999999999995 743322 2222222222221111000
Q ss_pred CCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 008158 117 VAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 196 (575)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~ 196 (575)
..+.+.+....++.++|.+...|...++..|.+|+ + ++...+..+...++|..+++.+++
T Consensus 296 -------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~ 355 (394)
T PRK11652 296 -------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSA 355 (394)
T ss_pred -------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 01344567777888999999999999988888874 3 688899999889999999999999
Q ss_pred hccccccch
Q 008158 197 YIQDSVSWV 205 (575)
Q Consensus 197 ~l~~~~gw~ 205 (575)
++.+...+.
T Consensus 356 ~~~~~~~~~ 364 (394)
T PRK11652 356 MLPQTGQFS 364 (394)
T ss_pred HccCCchHH
Confidence 887654443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=79.13 Aligned_cols=146 Identities=17% Similarity=0.217 Sum_probs=111.0
Q ss_pred HHHHHhhhhCCCh--hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008158 40 FMVYLLKEYHMNQ--TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDV 117 (575)
Q Consensus 40 l~~yl~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (575)
....+..+++.+. ...+++.+.+.+...++.++.|.++||+ |||+.+..+.....++.+...+..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~----------- 91 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN----------- 91 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc-----------
Confidence 3344444555454 5789999999999999999999999996 9998888888776666555555431
Q ss_pred CCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHH-HHHHHHHHHhhhhh
Q 008158 118 AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYT-TFTVVILITQTVLV 196 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~ig~~~~~~v~~ 196 (575)
.....+.+.|...|++.+...+...+++.|.+|+ . .+|+...+.... ...+|..+++.+++
T Consensus 92 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T COG0477 92 -------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAG 153 (338)
T ss_pred -------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1467789999999999999999999999999986 1 238888888888 57888888887777
Q ss_pred hcccc--ccchhHhHHHHHHH
Q 008158 197 YIQDS--VSWVIGFGIPTVLM 215 (575)
Q Consensus 197 ~l~~~--~gw~~~f~~~~~~~ 215 (575)
.+... .+|++.|.+.....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 154 LLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHhcchHHHHHHHHHHH
Confidence 66543 57888666555443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.1e-05 Score=75.96 Aligned_cols=160 Identities=10% Similarity=0.081 Sum_probs=110.8
Q ss_pred HHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 008158 37 LANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCD 116 (575)
Q Consensus 37 ~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 116 (575)
.....+.+++.+|+|++|...+...-.++..++ ++.|.+.|++ |.+.++.+|.+...+|..++..+.+-..
T Consensus 21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i------- 91 (250)
T PF06813_consen 21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRI------- 91 (250)
T ss_pred hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcc-------
Confidence 345568899999999999999999999999875 7789999995 9999999999999999988877542110
Q ss_pred CCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 008158 117 VAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 196 (575)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~ 196 (575)
.....+.+.+..++.|.+.+.+.........+.||+ + ||.+.++.-....+++.+-..+..
T Consensus 92 ------------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~ 152 (250)
T PF06813_consen 92 ------------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYS 152 (250)
T ss_pred ------------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHH
Confidence 011456677777777777766666666666788884 4 899999977777666666554443
Q ss_pred hccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 197 YIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 197 ~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
.+.+.-.-...+.+.....++.++..++
T Consensus 153 ~~f~~~~~~fll~la~~~~~v~l~~~~~ 180 (250)
T PF06813_consen 153 AFFGDDPSSFLLFLAVLPAVVCLVAMFF 180 (250)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 3333222233333333334444444343
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-05 Score=85.03 Aligned_cols=128 Identities=7% Similarity=-0.011 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcch
Q 008158 52 QTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSM 131 (575)
Q Consensus 52 ~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (575)
+...+.+...+.++..++.+++++++||+ |+|+++..+..+..+..++..+... .
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~------------------------~ 316 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFVPM------------------------Q 316 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhch------------------------h
Confidence 34455667778888889999999999995 9998877555544443333322210 0
Q ss_pred hhHHHHHHHHHHHHhccCCccccccccccCCCCCCc-ccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccc
Q 008158 132 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTD-EGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSW 204 (575)
Q Consensus 132 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw 204 (575)
+...+++..++.|++.+...+...++.+|..+.+|- .++++-+..++...+...+|..+++.++|++.+..|+
T Consensus 317 ~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 317 ASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222334445667888777777778888888775432 2233345557777788899999999888876554444
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00043 Score=72.31 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008158 445 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 506 (575)
Q Consensus 445 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~ 506 (575)
+.|.+.+.++..|+..+..+...+..+.+..|++.|..++|.......+|..+++.+.-++.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56666666777899999999999999999999999999999999999999988887765543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.3e-07 Score=92.56 Aligned_cols=145 Identities=14% Similarity=0.201 Sum_probs=111.4
Q ss_pred cccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHH
Q 008158 372 VGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAP 451 (575)
Q Consensus 372 ~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 451 (575)
++....+.-+++.|+.+. +.+|.+|+ +.+++|.++..++.+..+.. .+.|.+++
T Consensus 73 l~~vf~v~~~i~sPl~gy----LadryNR~-------~v~~vG~~iW~~Av~~~~fs---------------~~Fwq~~l 126 (493)
T KOG1330|consen 73 LQTVFIVVFMIASPLFGY----LADRYNRK-------RVIAVGIFIWTLAVFASGFS---------------NHFWQVLL 126 (493)
T ss_pred hhHHHHHHHHHHHHHHHH----HHhhcCcc-------eEEeeHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 344444555556665433 36665444 66899999999888887765 36778888
Q ss_pred HHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHH
Q 008158 452 QLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFY 531 (575)
Q Consensus 452 ~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f 531 (575)
.-.+.|+||+...|....++.|.+|.+.|++..+++++....|..+|..+...+...+ ..| ++.|
T Consensus 127 ~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-----~~W----------r~af 191 (493)
T KOG1330|consen 127 CRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-----FWW----------RWAF 191 (493)
T ss_pred HHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-----cce----------EEEE
Confidence 8899999999999999999999999999999999999999999999887777665543 125 5788
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Q 008158 532 FLIAGLGGLNIVYFLYCARRYRYKSG 557 (575)
Q Consensus 532 ~~~a~i~~v~~i~~~~~~~~~~~~~~ 557 (575)
.+.+++.++..++..++.++-+++.+
T Consensus 192 ~~~avl~vi~~~L~~~f~~eP~rga~ 217 (493)
T KOG1330|consen 192 RGSAVLGVIVGLLVFLFVREPERGAR 217 (493)
T ss_pred EeehHHHHHHHHHHHhhccCcccccc
Confidence 88999999888887777666554433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.6e-05 Score=82.15 Aligned_cols=169 Identities=14% Similarity=0.033 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
++......++....+++.....|.++++.+|++..+.++.......+..++..+.+.+.++. ++++.......+..++.
T Consensus 220 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig~ 298 (413)
T PRK15403 220 FLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVGL 298 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHH
Confidence 33333444455555566667778899999999999999998888888888777777766543 45454433444444444
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
.+........ ..+....++..++.++|.+...|+..+.. +.+.+.+ ++++.+
T Consensus 299 ~l~~~~~~~~---------------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~a--l~~~~~~-----~G~a~a 350 (413)
T PRK15403 299 ALLIVGNLLW---------------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFT--LFSNNLP-----KGTVSA 350 (413)
T ss_pred HHHHHHHHHc---------------------cccHHHHHHHHHHHHHHHHHHhHHHHHHH--hccCCCC-----CcHHHH
Confidence 4443321000 00233356777888899888888777432 2222221 688888
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHH
Q 008158 179 WYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIG 217 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i 217 (575)
.++.....+...++.+++++... +-++.|....++..+
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 351 SLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 88888888888888888888664 556667655544433
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00021 Score=72.51 Aligned_cols=158 Identities=16% Similarity=0.109 Sum_probs=92.7
Q ss_pred cCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHH--HHhhhhHHHhh-----hcccch
Q 008158 12 KPGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTN--FAPLLGAFISD-----TYIGRF 84 (575)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~--~~~~~~G~laD-----~~~Grr 84 (575)
.+...+.++.++.......+. +|+.. ..+++-+.-|.|-++.+. +.+... ..-+.+.++.| | +|||
T Consensus 26 ~~~d~~~illLl~LYllQGiP-~GL~~-~iP~lL~ak~vSyt~~a~----fS~ay~P~sLKllWaPiVDs~y~k~-~Grr 98 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIP-LGLIG-AIPLLLQAKGVSYTSQAI----FSFAYWPFSLKLLWAPIVDSVYSKR-FGRR 98 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCc-hhHhh-hhHHHhcCCCcchhhhhh----hhhhhhHHHHHHHHHhhhHHHHHHh-hccc
Confidence 345556777777777776665 67777 555555577777777543 333333 34467889999 8 5999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCC
Q 008158 85 KTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 164 (575)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 164 (575)
|.-++= .-+.+|.++..++..++...++ ++..+ +...+....+++-+.++.--.+.-...-.+..+
T Consensus 99 ksWvvp-~q~llG~~mllLs~~v~~~~g~------------ng~~p-~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~ 164 (510)
T KOG3574|consen 99 KSWVVP-CQYLLGLFMLLLSYLVDRGLGG------------NGGLP-NVVALTLLFLLLNFLAATQDIAVDGWALTMLSR 164 (510)
T ss_pred cceeee-hHHHHHHHHHHHhhCCCccccc------------CCCCc-chHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH
Confidence 965432 2334555555555544432111 11111 222233344455555555445555555556666
Q ss_pred CCcccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 008158 165 TTDEGVKGINSFFNWYYTTFTVVILITQTVLV 196 (575)
Q Consensus 165 ~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~ 196 (575)
++ .+-+......+.+.|.+++..+.-
T Consensus 165 e~------lgyaST~q~Vg~~~GyfL~~~ifL 190 (510)
T KOG3574|consen 165 EN------LGYASTCQSVGQTAGYFLGNVVFL 190 (510)
T ss_pred hh------cCchhHHHHHHHhhhHHhhcceee
Confidence 66 788888888888888888876643
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=84.14 Aligned_cols=157 Identities=9% Similarity=0.124 Sum_probs=122.6
Q ss_pred hhHHHHHHHHhhhhC---CChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008158 35 GLLANFMVYLLKEYH---MNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLH 111 (575)
Q Consensus 35 ~~~~~l~~yl~~~l~---~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~ 111 (575)
..-..++.|.+..++ .++...|.+.+.-.+.-.+.-.+..++.+| +|.|+.++++..+..+=..++++++
T Consensus 238 vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~~------ 310 (412)
T PF01306_consen 238 VFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFAT------ 310 (412)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhhc------
Confidence 333457788876554 344557777777778888888899999999 5999999999999998888888876
Q ss_pred CCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHH-HHHHHHHHHH
Q 008158 112 PPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWY-YTTFTVVILI 190 (575)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~~ 190 (575)
+.+.+.+.+.++|+-.+.......-|+++.+|++. .++.+.+. +....+|..+
T Consensus 311 --------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~~~~~~~~~~~i 364 (412)
T PF01306_consen 311 --------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVGFQFAKQIGIII 364 (412)
T ss_dssp --------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHHHTTTHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999755 66777764 5667999999
Q ss_pred HhhhhhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 191 TQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 191 ~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
.+.++|++.|..|++..|++-+.+.+...++..+
T Consensus 365 ~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 365 LSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence 9999999999999999998766555544444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.4e-06 Score=84.52 Aligned_cols=162 Identities=13% Similarity=0.039 Sum_probs=118.9
Q ss_pred hHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc--chHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008158 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIG--RFKTITFASIAAILGMLTVTLTAWLPQLHPP 113 (575)
Q Consensus 36 ~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G--rr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 113 (575)
+-..++.+..+.+..+.-+.|....-..+...++..+.|.++||+ + |-..-..++++..+.+....+++
T Consensus 289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~~-------- 359 (464)
T KOG3764|consen 289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFAT-------- 359 (464)
T ss_pred hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhhh--------
Confidence 345677888888885555899888889999999999999999996 9 43333333333333333344443
Q ss_pred CCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhh
Q 008158 114 KCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQT 193 (575)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~ 193 (575)
+...+++-++..+++.+..-+...+......+..+.++-+..|..+++...+..+|..+||.
T Consensus 360 ------------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~ 421 (464)
T KOG3764|consen 360 ------------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPT 421 (464)
T ss_pred ------------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhcccc
Confidence 55667777888888888877777777777777665443446899999999999999999999
Q ss_pred hhhhccccccchhHhHHHHHHHHHHHHHHHh
Q 008158 194 VLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 194 v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
++|++.+.+|++|.-.+.++..++-.-++.+
T Consensus 422 ~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 422 FGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred ccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877666554444444333
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=70.46 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=67.0
Q ss_pred HHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 008158 41 MVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKP 120 (575)
Q Consensus 41 ~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (575)
..|+-+.+++...+.+.+.-.......++..+.|-|+||- |||+.-.. +.+..+++.+...-|
T Consensus 60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvt----ycitYiLsCiTKhSp------------ 122 (454)
T KOG4332|consen 60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVT----YCITYILSCITKHSP------------ 122 (454)
T ss_pred eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceee----ehHHHHHHHHhhcCC------------
Confidence 3556678899999999887777777788888889999995 99997654 444445555554322
Q ss_pred CCCccCCCcchhhHHHHHHHHHHHHhccCCcccccccc
Q 008158 121 PFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFG 158 (575)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ 158 (575)
++-+++++|.+.|+..+..+++.-+..
T Consensus 123 -----------qYkVLmVGR~LGGiaTsLLFSaFEsWl 149 (454)
T KOG4332|consen 123 -----------QYKVLMVGRVLGGIATSLLFSAFESWL 149 (454)
T ss_pred -----------ceEEEeehhhhhhHHHHHHHHHHHHHH
Confidence 556699999999999998877666543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.8e-06 Score=84.09 Aligned_cols=167 Identities=11% Similarity=0.030 Sum_probs=116.1
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFKTITFASIA 93 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~~~~~~~l 93 (575)
+.+..+....+-..+++-.=.+++++|++ ++|.+..-.+.+-...-+...+.+|+.|..+||. +||||.++....+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 44444444444444554444567778876 7888888788777777788888999999999986 6888876665554
Q ss_pred -HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 94 -AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
..++.++...++++.-+..+..+. | ..+....+++++..+.=++.-..+...-++.+|....++.
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~-------~--~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~----- 176 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERK-------P--VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK----- 176 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCccc-------c--cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----
Confidence 557888888877655322211111 0 1233566677777777788877888889999999865441
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhc
Q 008158 173 INSFFNWYYTTFTVVILITQTVLVYI 198 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~~~~~~v~~~l 198 (575)
+.++.+++.....+|..+|+.++++.
T Consensus 177 ~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 177 KTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hhccchhHHHHHHhcceeeeeccccc
Confidence 22399999999999999999888754
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00017 Score=74.70 Aligned_cols=155 Identities=18% Similarity=0.281 Sum_probs=127.1
Q ss_pred HHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008158 39 NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVA 118 (575)
Q Consensus 39 ~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (575)
.+=+|-.+-||++..+...++..+..+..++-...|++..|..+++++-.+++.+.+++.....++...
T Consensus 230 iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~----------- 298 (403)
T PF03209_consen 230 ILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL----------- 298 (403)
T ss_pred HcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 444677778999999999999999999999999999998865788888889999988887777766531
Q ss_pred CCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhc
Q 008158 119 KPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI 198 (575)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l 198 (575)
.+.+.+..+.++.|+|.|.+.....+...|...+++ .|..++.+.....++..++..++|.+
T Consensus 299 ------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 299 ------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred ------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 256778999999999999999999999999998776 78999999999999999998888866
Q ss_pred cc----------cccchhHhHHHHHHHHHHHHHH
Q 008158 199 QD----------SVSWVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 199 ~~----------~~gw~~~f~~~~~~~~i~~~~~ 222 (575)
.| ..+|..+|.+.++..++++.+.
T Consensus 361 ~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 361 RDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 43 2356677777776666555543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.6e-05 Score=83.95 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=104.8
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhCCCh----hhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHH-------HHHHHHHH
Q 008158 26 ETFERLATIGLLANFMVYLLKEYHMNQ----TSAANILNIWGGVTNFAPLLGAFISDTYIGRFKT-------ITFASIAA 94 (575)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~----~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~-------~~~~~~l~ 94 (575)
..+....+......++.|.++..+.+. -..+++.+...+...+..++.|++.||+ |||+. +.+|+++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 444445555566777788775333221 1234555555566767778889999995 98873 77788887
Q ss_pred HHHHHHHHHHhh-cCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 95 ILGMLTVTLTAW-LPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 95 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
.++.+..+.... .... ....+.++++..-++.|+|.++..|...+++.+..|++. +
T Consensus 357 ~~~~~~~~~~~~~~~~~-----------------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~ 413 (489)
T PRK10207 357 SLGFLTAAAAGMWFADA-----------------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------M 413 (489)
T ss_pred HHHHHHHHHHHHhhcCC-----------------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------H
Confidence 777665443210 0000 011246677788889999999999999999999999877 9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhc
Q 008158 174 NSFFNWYYTTFTVVILITQTVLVYI 198 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~~~l 198 (575)
+.+++.++...++|..+|..++.+.
T Consensus 414 g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 414 GFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998887654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=80.73 Aligned_cols=168 Identities=11% Similarity=0.021 Sum_probs=110.7
Q ss_pred HHHHHhhhhHHHHHHHHhh--hhCCCh------hhHHHHHHHHHHHHHHHhhhh----HHHhhhcccchHHHHHHHHHHH
Q 008158 28 FERLATIGLLANFMVYLLK--EYHMNQ------TSAANILNIWGGVTNFAPLLG----AFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 28 ~~~~~~~~~~~~l~~yl~~--~l~~~~------~~~~~i~~~~~~~~~~~~~~~----G~laD~~~Grr~~~~~~~~l~~ 95 (575)
+....+|.+...++.++.. ..+.+. ...+++.++-.+...++.++. +++.||+ +..+.+.+|+++..
T Consensus 283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~ 361 (500)
T PRK09584 283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCS 361 (500)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHH
Confidence 4445556666666666543 111211 125555666665555665555 5666663 66788889999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
++.+..+.....+. .| +..+.+++++..++.|+|+++..|...+++.+..|++. |++
T Consensus 362 l~f~~l~~~~~~~~--------------~~---~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~ 418 (500)
T PRK09584 362 GAFLVLPLGAKFAN--------------DA---GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGF 418 (500)
T ss_pred HHHHHHHHHHHhcC--------------CC---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHH
Confidence 99888877653211 00 12245678999999999999999999999999999877 999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhccc----------cccchhHhHHHHHHHHHHH
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQD----------SVSWVIGFGIPTVLMIGAI 219 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~----------~~gw~~~f~~~~~~~~i~~ 219 (575)
.++.++....+|..++..+.+.... ..++.+.|...++..++..
T Consensus 419 ~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 419 IMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999888777777777666543210 1135667766555444333
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.6e-05 Score=58.63 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=54.2
Q ss_pred HHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 008158 26 ETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAA 94 (575)
Q Consensus 26 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~ 94 (575)
.++-..+.-.+.++++.|++ +.|+|..+.|.+.++..+...++++++|+++||+ ||++.++....++
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 33443444456778888888 5999999999999999999999999999999995 9888877665543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00022 Score=76.98 Aligned_cols=201 Identities=9% Similarity=-0.032 Sum_probs=137.5
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-hCCChh------h----HHHHHHHHHHHHHHHhhhhHHHhhhcccc
Q 008158 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKE-YHMNQT------S----AANILNIWGGVTNFAPLLGAFISDTYIGR 83 (575)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~~~~------~----~~~i~~~~~~~~~~~~~~~G~laD~~~Gr 83 (575)
.+|.+..+...+++.+++++....+.+.|+.++ +|-++. + ..+....+.+...+.+++--++.+| +|+
T Consensus 256 mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-~g~ 334 (477)
T TIGR01301 256 LPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-WGA 334 (477)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 447788888999999999999999999998864 443221 1 2233444555555666677788999 595
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHhhcCC-C--CCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccc
Q 008158 84 -FKTITFASIAAILGMLTVTLTAWLPQ-L--HPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGV 159 (575)
Q Consensus 84 -r~~~~~~~~l~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~ 159 (575)
|++...+.++..+++....+.++.++ . .+++-+. ..++....+..++...+.|+..+......+++++
T Consensus 335 ~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s 406 (477)
T TIGR01301 335 GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGES--------LPPPTGIKASALIVFAILGIPLAITYSIPFALAS 406 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc--------cCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 67778888888888887776543211 0 0000000 0001112355667778899999999999999999
Q ss_pred cCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhcccccc--chhHhHHHHHHHHHHHHHHHhccce
Q 008158 160 DQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS--WVIGFGIPTVLMIGAIILFLVGKKL 228 (575)
Q Consensus 160 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~g--w~~~f~~~~~~~~i~~~~~~~~~~~ 228 (575)
+..+++. ++.|..+++.+.+..+...+.....|.+.+..| -.+.+.+.++..+++.+..++..|+
T Consensus 407 ~~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 407 IRSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 9998543 346999999999999999998877777554443 4467777888877777776665553
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.8e-05 Score=84.33 Aligned_cols=136 Identities=5% Similarity=-0.198 Sum_probs=106.5
Q ss_pred hhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCc
Q 008158 45 LKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQ 124 (575)
Q Consensus 45 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (575)
.+.+|+++.+.|.+.....++..++....+++.+| ++.|+++.++.++.+++.....+..+-+....
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~------------ 346 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF------------ 346 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeecccccc------------
Confidence 45789999999999999999999999999999999 59999999999998887766432211110000
Q ss_pred cCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhcccccc
Q 008158 125 CKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS 203 (575)
Q Consensus 125 ~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~g 203 (575)
+......+...-++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.+..|
T Consensus 347 ----gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 347 ----GISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred ----CCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00012234445567788888878888999999999887 8999999999999999999999999988766
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0029 Score=66.28 Aligned_cols=156 Identities=12% Similarity=0.067 Sum_probs=110.8
Q ss_pred HHHHHHHHhhh-hCCChhhHHH-HHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 008158 37 LANFMVYLLKE-YHMNQTSAAN-ILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPK 114 (575)
Q Consensus 37 ~~~l~~yl~~~-l~~~~~~~~~-i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (575)
-+++.+|+.+. .|++..|... +.-+..=......++...+.|. +|.|++++.+.+..++...++.+.+
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~--------- 92 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT--------- 92 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC---------
Confidence 45788999887 8999888764 3334444455566777899999 5999999999988888888877765
Q ss_pred CCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhh
Q 008158 115 CDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTV 194 (575)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v 194 (575)
+...+-+.-+.-|++.+. ..+..+++-...|+++ ..++.++...+.-+|-.++..+
T Consensus 93 -----------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~l 148 (412)
T PF01770_consen 93 -----------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLL 148 (412)
T ss_pred -----------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777888888776 3445666666667655 6777777777777777777666
Q ss_pred hhhccc--cccchhHhHHHHHHHHHHHHHHHhcc
Q 008158 195 LVYIQD--SVSWVIGFGIPTVLMIGAIILFLVGK 226 (575)
Q Consensus 195 ~~~l~~--~~gw~~~f~~~~~~~~i~~~~~~~~~ 226 (575)
+-.+.. ..+++...+++.....+++++.+++.
T Consensus 149 gQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 149 GQLLVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 554443 34577777777776666666655543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.018 Score=62.03 Aligned_cols=170 Identities=8% Similarity=-0.042 Sum_probs=98.8
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCC-----hhhHHHHHHHHHHHHHHH-hhhhHHHhhhcccchHHHH
Q 008158 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMN-----QTSAANILNIWGGVTNFA-PLLGAFISDTYIGRFKTIT 88 (575)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~-----~~~~~~i~~~~~~~~~~~-~~~~G~laD~~~Grr~~~~ 88 (575)
-+|........-||-.+.++.+.. +++.+..+ .....++.....+...+. .++-+++++|+ +|++.+-
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~ 78 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY 78 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence 345555555555555555554443 67777663 246777776666655554 77789999995 9999888
Q ss_pred HHHHHHHHHHHHHHHHhh-cCCCCCCCC--CC---CCCCCCccCC--CcchhhHHHHHHHHHHHHhccCCcc-ccccccc
Q 008158 89 FASIAAILGMLTVTLTAW-LPQLHPPKC--DV---AKPPFGQCKS--ANSMQLGVLVMGLGLLSIGTGGIRP-CSIPFGV 159 (575)
Q Consensus 89 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~--~~---~~~~~~~~~~--~~~~~~~~l~~~~~l~g~g~g~~~~-~~~~~~~ 159 (575)
.....+..-..++++.-- .+...+|+. |- ..+++....- -+.+....+++. ..+-.....+ .-.++..
T Consensus 79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~---~elw~~~vvS~lFW~fan 155 (472)
T TIGR00769 79 TVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVM---AELWGSVVLSLLFWGFAN 155 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 777766665555554311 111111110 10 0010000000 001111122222 2232223333 6788999
Q ss_pred cCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhcc
Q 008158 160 DQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ 199 (575)
Q Consensus 160 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~ 199 (575)
|.+..+| -.|.++.++.+.|+|.++++.+..++.
T Consensus 156 di~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 156 QITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred hcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877 899999999999999999998888765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=78.70 Aligned_cols=162 Identities=11% Similarity=-0.005 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhc---ccchHHHHHHHHHH
Q 008158 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTY---IGRFKTITFASIAA 94 (575)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~~~~~~~l~ 94 (575)
.++......++....-|+...+++.|+++..|+|..+++.+...+.++..++.+++|+++||. +.+|..+.....++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 355666788888888899999999999997789999999999999999999999999999992 25665555555544
Q ss_pred H-HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 95 I-LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 95 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
. +|.+...... .......+......+.+...++......+....+. +|
T Consensus 354 ~~~g~~~l~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~ 402 (495)
T KOG2533|consen 354 AIIGAISLLAAA--------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KA 402 (495)
T ss_pred HHHHHHHHHhhc--------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----Hh
Confidence 4 3323333322 11112222222333344444455555555554433 35
Q ss_pred hhhhHHHHHHHHHHHH-HHhhhhhhccccccchhHhHH
Q 008158 174 NSFFNWYYTTFTVVIL-ITQTVLVYIQDSVSWVIGFGI 210 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~-~~~~v~~~l~~~~gw~~~f~~ 210 (575)
-...+.+..+.+.+.. .+++.-+.....++|...|..
T Consensus 403 ~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 403 LTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred HHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 5555555555544444 444445555666788888843
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0012 Score=70.21 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=76.2
Q ss_pred HHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhh
Q 008158 393 PALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFN 472 (575)
Q Consensus 393 ~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~ 472 (575)
.+.||++-| +.+.++.+..++..++.++. .+...+.+.-+++|++++... +...++.
T Consensus 84 lLaDrlG~K-------~vL~l~~l~Wsl~t~L~~fa---------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~ 140 (511)
T TIGR00806 84 LLTDYLRYK-------PVLVLQALSFVCVWLLLLLG---------------TSVWHMQLMEVFYSVTMAARI-AYSSYIF 140 (511)
T ss_pred HHHHHhCch-------HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 348887544 56777877777777777754 356677788899999999999 9999999
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008158 473 KQFPDHMKSIANSLLFCSFGFASYLSSLLITIV 505 (575)
Q Consensus 473 ~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i 505 (575)
.-+|++.|++++|+.+....+|..+++.+.+++
T Consensus 141 ~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 141 SLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999983
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00049 Score=70.86 Aligned_cols=139 Identities=19% Similarity=0.175 Sum_probs=109.9
Q ss_pred hhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 008158 35 GLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPK 114 (575)
Q Consensus 35 ~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 114 (575)
.+..+++.|+.+..|++..+++..++.+..+..++..++-++..| +...|++....+..++-.+..++.+
T Consensus 254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~~--------- 323 (422)
T COG0738 254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALIG--------- 323 (422)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 356789999998899999999999999999999999999999999 4988988777766665555555543
Q ss_pred CCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhh
Q 008158 115 CDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTV 194 (575)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v 194 (575)
+ .+.+.+.++.|+..+.++|++.+...+..|++.. .+... -.+.-+|+.+.|.+
T Consensus 324 -----------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~~---l~maivGGAiiP~l 377 (422)
T COG0738 324 -----------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSGL---LVMAIVGGAIIPPL 377 (422)
T ss_pred -----------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----cccee---eeeheecchHHHHH
Confidence 1 3345666778999999999999999999994431 22222 22345888999999
Q ss_pred hhhccccccchhHhH
Q 008158 195 LVYIQDSVSWVIGFG 209 (575)
Q Consensus 195 ~~~l~~~~gw~~~f~ 209 (575)
-|++.|..|-...+.
T Consensus 378 ~G~i~d~~g~~~~~~ 392 (422)
T COG0738 378 QGVIADMFGIQLTFL 392 (422)
T ss_pred HHHHHHhhhhHHHHH
Confidence 999999998877766
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00018 Score=80.94 Aligned_cols=128 Identities=14% Similarity=0.042 Sum_probs=89.0
Q ss_pred cccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHh----hhhc-----------
Q 008158 370 GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVER----GRRA----------- 434 (575)
Q Consensus 370 ~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~----~~~~----------- 434 (575)
+.+.+...++..+..++..+ +.+|.+|+ +.+.+|.++++++.++.++... +...
T Consensus 71 G~i~s~~~i~~~~~~i~v~~----~~~r~~r~-------~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSY----FGTKLHRP-------IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred eeeeehhhHHHHHHHHHHHH----hhcccCcc-------eEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 34445555555555554333 37776544 4477888888888877766531 0000
Q ss_pred ----ccc-c---------------CCCc-cchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHH
Q 008158 435 ----SAH-L---------------HPMS-QVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGF 493 (575)
Q Consensus 435 ----~~~-~---------------~~~~-~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~l 493 (575)
.+. . +... ...+..++++-++.|+|.+...+....++.|.+|++.|+.+.|+.+....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 000 0 0000 113456667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 008158 494 ASYLSSLLITIVHGV 508 (575)
Q Consensus 494 g~~l~~~l~~~i~~~ 508 (575)
|..+++.+.+++.+.
T Consensus 220 G~~lG~llgg~l~~~ 234 (633)
T TIGR00805 220 GPAFGYLLGSFCLQI 234 (633)
T ss_pred hhHHHHHHHHHHHhc
Confidence 999999999887754
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00035 Score=75.74 Aligned_cols=121 Identities=12% Similarity=0.066 Sum_probs=82.2
Q ss_pred HHHhhhh-hcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHh
Q 008158 392 VPALRKI-TKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEF 470 (575)
Q Consensus 392 ~~~~~r~-~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~ 470 (575)
.++.||+ ++| +.+.+|.++..++.+.+.... .+.....+...+..+|.+...+...++
T Consensus 66 G~LaDRilGrr-------r~iliG~il~~lg~lll~~~~--------------~~~~~~~l~l~li~iG~G~~~~~~~al 124 (493)
T PRK15462 66 GFLADKVLGNR-------MAVMLGALLMAIGHVVLGASE--------------IHPSFLYLSLAIIVCGYGLFKSNVSCL 124 (493)
T ss_pred HHHHHHccCcH-------HHHHHHHHHHHHHHHHHHHhh--------------cchhHHHHHHHHHHHhcccccccHHHH
Confidence 3347876 444 457788888887766554221 111223334445556777777777889
Q ss_pred hhccCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 008158 471 FNKQFPDH--MKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYC 548 (575)
Q Consensus 471 ~~~~~p~~--~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~ 548 (575)
+.|.+|++ .|.++.++.++..++|+.+++.+.+++.+.. +.++.|.+.++..+++++.+++.
T Consensus 125 v~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------Gw~~~F~iaaigm~l~li~~~~~ 188 (493)
T PRK15462 125 LGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------SWAMGFGLAAVGMIAGLVIFLCG 188 (493)
T ss_pred HHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------ChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999975 7999999999999999999999999987533 34677777666556665555443
Q ss_pred H
Q 008158 549 A 549 (575)
Q Consensus 549 ~ 549 (575)
.
T Consensus 189 ~ 189 (493)
T PRK15462 189 N 189 (493)
T ss_pred h
Confidence 3
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0001 Score=78.17 Aligned_cols=159 Identities=9% Similarity=-0.001 Sum_probs=125.8
Q ss_pred hHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008158 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKC 115 (575)
Q Consensus 36 ~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (575)
+.+++--+ .++++-...-.|.....-..+-.+.-++.++|..|+ |+-+++..++...++=.+......
T Consensus 390 v~tFLfWH-led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~---------- 457 (618)
T KOG3762|consen 390 VFTFLFWH-LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQ---------- 457 (618)
T ss_pred HHHHHHHH-HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhc----------
Confidence 34444333 446665666666556666677778888889999995 999999999988888777777765
Q ss_pred CCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHH-HHHHHHHhhh
Q 008158 116 DVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF-TVVILITQTV 194 (575)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~ig~~~~~~v 194 (575)
+.|..+..-+++|+..+.++.++.+|+++..|++. |..+-++..... .+|-.+|.++
T Consensus 458 ----------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslI 515 (618)
T KOG3762|consen 458 ----------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLI 515 (618)
T ss_pred ----------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhh
Confidence 56778888899999999999999999999999987 788877766554 7888889999
Q ss_pred hhhccccccchhHhHHHHHHHHHHHHHHHhccce
Q 008158 195 LVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKL 228 (575)
Q Consensus 195 ~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~ 228 (575)
+|.+.+.+|-|..|.+.++.+++.++++....+.
T Consensus 516 GG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 516 GGFVVERFGARTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred hhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999988888777777766655443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0017 Score=71.46 Aligned_cols=181 Identities=13% Similarity=0.117 Sum_probs=103.6
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~ 92 (575)
+..+|..........+..+.-+....+....+-+..+.+... .+...+..+...++..++.++.||+ |||+.++.+..
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence 445555555555666665555544444444455566665433 5556666677778888889999995 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccc
Q 008158 93 AAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKG 172 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 172 (575)
.+.+++++++.......... .|.. ......+....+.......+..|....+.+|.+|.+-
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~-----------~~~~--~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------ 428 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYP-----------NSSK--GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------ 428 (513)
T ss_pred HHHHHHHHHHHHHHHhccCC-----------Cccc--chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------
Confidence 99999998887543221000 0000 0011112222222333334445566678899999877
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHH
Q 008158 173 INSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVL 214 (575)
Q Consensus 173 r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~ 214 (575)
|+.+.++......+...+.......+.+..++...|.+.+..
T Consensus 429 r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~ 470 (513)
T KOG0254|consen 429 RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGI 470 (513)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 888887765555444443332333333333233444443333
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00091 Score=73.88 Aligned_cols=125 Identities=12% Similarity=0.077 Sum_probs=88.5
Q ss_pred HHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhh
Q 008158 392 VPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFF 471 (575)
Q Consensus 392 ~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~ 471 (575)
.++.||++ +++.+.+|.++..++.++.++.... ....+.+.+.+..++.|+|.+..++.....+
T Consensus 82 G~L~Dr~G-------~R~vllig~ll~~iG~ll~ala~~~---------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i 145 (591)
T PTZ00207 82 SFIYDYLG-------PRPIFVLSMTVFCLGTLLFALTFQE---------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTV 145 (591)
T ss_pred HHHHHHhC-------cHHHHHHHHHHHHHHHHHHHHHhcc---------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577764 4467889999999998887764211 0123677777788889999999999988888
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008158 472 NKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCAR 550 (575)
Q Consensus 472 ~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~ 550 (575)
.+.+| +.||.+.|+..+...+|+.+.+.+...+... + ...+|++.+++.++..++.+.+.+
T Consensus 146 ~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-------~----------~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 146 LSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-------N----------TSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h----------HHHHHHHHHHHHHHHHHHHHhhee
Confidence 98887 6799999999999999998655554443321 2 245677777777766555555443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.47 E-value=8.9e-07 Score=95.34 Aligned_cols=174 Identities=15% Similarity=0.128 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 008158 23 LGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVT 102 (575)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~ 102 (575)
+....+..+..+....+..+++.+..+.+.. -.......+...++.+++.++.|| +|||+.++.+..+..++++.++
T Consensus 258 ~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~ 334 (451)
T PF00083_consen 258 LLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILG 334 (451)
T ss_pred ccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence 3333333333333444555566666776655 222334445566677777899999 5999999999888887777665
Q ss_pred -HHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHH
Q 008158 103 -LTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 181 (575)
Q Consensus 103 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 181 (575)
.....+. .+ ...+...+............+..+....+.+|.+|.+. |+++.++.+
T Consensus 335 ~~~~~~~~--~~---------------~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~ 391 (451)
T PF00083_consen 335 IIFFLGVS--SS---------------SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSY 391 (451)
T ss_pred cccccccc--cc---------------cccccccceeeeeccccccccccccccccccccccccc------ccccccccc
Confidence 1110000 00 00011111111111122222445677788999999988 999999999
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHH
Q 008158 182 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILF 222 (575)
Q Consensus 182 ~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~ 222 (575)
....++.++++.+..++.+..+-...|++.+++.++..+..
T Consensus 392 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~ 432 (451)
T PF00083_consen 392 AVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFV 432 (451)
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHhhe
Confidence 99999999999888887776652334544444444444433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00024 Score=74.08 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=94.7
Q ss_pred HhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhcc
Q 008158 69 APLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTG 148 (575)
Q Consensus 69 ~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g 148 (575)
+..++.++.|+ +|||++-+.+++++.+..+.++...+-+ .. ....++..-+.+-++.-
T Consensus 364 Gyw~tv~~id~-iGRk~iq~~GF~~~~i~~~~~~~~y~~~----------~~-----------~~Gf~v~y~l~~ff~NF 421 (538)
T KOG0252|consen 364 GYWFTVYFIDI-IGRKYIQLMGFFIMTIFFFVIAGPYNQL----------EN-----------TIGFVVLYSLTFFFGNF 421 (538)
T ss_pred ceeEEEEEeeh-hhhHHHHHhhHHHHHHHHHHHcCCcccc----------cc-----------cCceeehHHHHHHHHhc
Confidence 55566788999 5999999999999998888877643210 01 11111222222334444
Q ss_pred CCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccc-----cccchhHhHHHHHHHHHHHHHHH
Q 008158 149 GIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD-----SVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~-----~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
+...+.-.+-+|.||..- |+.+.++...+.-+|+++|.....++++ ..|.+++|++.+.+.+++++..+
T Consensus 422 GPn~ttfivpaE~FParv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~ 495 (538)
T KOG0252|consen 422 GPNATTFIVPAEIFPARV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL 495 (538)
T ss_pred CCCceeEEeehhhchHHH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE
Confidence 445566677799999877 9999999999999999999999999988 78899999999888887777655
Q ss_pred h
Q 008158 224 V 224 (575)
Q Consensus 224 ~ 224 (575)
+
T Consensus 496 l 496 (538)
T KOG0252|consen 496 L 496 (538)
T ss_pred E
Confidence 4
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.31 Score=51.94 Aligned_cols=188 Identities=9% Similarity=-0.057 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
.+.+-+.+++.+.+--..-.-.+.|+.+-+.=+---.+..-..-.+...++.+.-|...||. -|.+++..+.+..-++.
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence 34455566666655554555566677655432333333333344455566667779999995 99999888877654433
Q ss_pred HHHHH----HhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchh
Q 008158 99 LTVTL----TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 174 (575)
Q Consensus 99 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 174 (575)
...+. ....+... .+ .+......+.+...+..+..=+......+.--|+...=..+++..+.
T Consensus 83 ~~s~~~~~~l~~~~~~~-----------~~---~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La 148 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSS-----------SQ---SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALA 148 (432)
T ss_pred HHHHHHHHHHHhCCccc-----------cc---cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHH
Confidence 33221 11111000 00 00112222222223333333333334455556665432112223466
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHH
Q 008158 175 SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 175 ~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~ 221 (575)
+..+...-.=.+.-+++|.+.|.+....|.+....+.++..++.+.+
T Consensus 149 ~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 149 RMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 66666555556788899999999988888887777666666665554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.002 Score=71.00 Aligned_cols=139 Identities=12% Similarity=0.276 Sum_probs=92.4
Q ss_pred ccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHH
Q 008158 369 PGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFW 448 (575)
Q Consensus 369 ~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (575)
..++...+.+...+..|+.+++ .|.++|| +.+..|.++..+|.++.+.. .+...
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~L----SDlfGRr-------~~~i~g~~l~vvG~Iv~atA---------------~~~~~ 133 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRL----SDLFGRR-------YFFIIGSLLGVVGSIVCATA---------------QNMNT 133 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHH----HHHhcch-------HHHHHHHHHHHhHHHHhhcC---------------CcHHH
Confidence 3455566677777777775555 8887666 55888888999998887754 35556
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhH
Q 008158 449 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLD 528 (575)
Q Consensus 449 ~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 528 (575)
++.+..+.|+|.+.... ....+.|..|.+.|+.+.++.....-.....++.+...+.. ..+| .
T Consensus 134 ~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~~W----------R 196 (599)
T PF06609_consen 134 FIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HSGW----------R 196 (599)
T ss_pred HHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CCCc----------c
Confidence 77788888888766654 45557899999999888776554443433344444433322 2467 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008158 529 YFYFLIAGLGGLNIVYFLYCAR 550 (575)
Q Consensus 529 ~~f~~~a~i~~v~~i~~~~~~~ 550 (575)
|.|++.+++..++++..+++++
T Consensus 197 w~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 197 WIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHhC
Confidence 6777777777776666555543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0074 Score=64.54 Aligned_cols=157 Identities=10% Similarity=0.019 Sum_probs=93.7
Q ss_pred chhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHH
Q 008158 375 ISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLI 454 (575)
Q Consensus 375 i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 454 (575)
...++.++..|..+.. ..|.+ +-++-+..|.+++.++.+++..++.. ++-..+.+.++.+
T Consensus 79 a~slg~~i~~liF~~W----s~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~----------~~~~~y~mL~~R~ 138 (488)
T KOG2325|consen 79 ASSLGHAIFSLIFGIW----SNKTG------SVKKPLIVSFLIAIIGNLLYLALAYV----------PNGVKYLMLVARI 138 (488)
T ss_pred HHHHHHHhcchhhccc----ccccC------CcccCHHHHHHHHHHHHHHHHHHHhc----------ccchHHHHHHHHH
Confidence 3555555555554332 33322 22445889999999999998666543 1226677888899
Q ss_pred HHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHH
Q 008158 455 LMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLI 534 (575)
Q Consensus 455 l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 534 (575)
+.|+|.+. ....=.|+.+..-.+.|.++.+.......+|.++|+.+.+.+.....+ .-.|.++ ..-+-+...-|++
T Consensus 139 l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~--G~~i~~~-~~~n~YTap~w~m 214 (488)
T KOG2325|consen 139 LTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK--GFMILPG-LIFNMYTAPAWLM 214 (488)
T ss_pred HcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC--ceEEcCc-ceEEecchHHHHH
Confidence 98888533 344556777765566677777766666677777777776654332100 0112221 2222344556677
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 008158 535 AGLGGLNIVYFLYCARRYRYK 555 (575)
Q Consensus 535 a~i~~v~~i~~~~~~~~~~~~ 555 (575)
+++.++.++...++.+|..+.
T Consensus 215 ~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 215 AILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred HHHHHHHHHHHHhheeecccC
Confidence 777777777777776665443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0057 Score=49.14 Aligned_cols=68 Identities=9% Similarity=0.026 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 008158 37 LANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTA 105 (575)
Q Consensus 37 ~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~ 105 (575)
++.+.+.++++.++|.++.+++.+...+++.++++...++.++. .+++.+..+.++..+.++.+++.+
T Consensus 11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778889999999999999999999999999999999999994 888999999999999999999875
|
Note that many members are hypothetical proteins. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=53.78 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=84.9
Q ss_pred ChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcc
Q 008158 51 NQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANS 130 (575)
Q Consensus 51 ~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (575)
++..--.-.++......+..+++..+.++ +|.|+++.++.+.+.+-.......
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~~-------------------------- 87 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFYP-------------------------- 87 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhh--------------------------
Confidence 33333344666667777888888999999 599999999999887554443321
Q ss_pred hhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 008158 131 MQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 196 (575)
Q Consensus 131 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~ 196 (575)
+.+.++.+-++.|+|.+..+.....++.+..++++ |++..+++....+.+.++|..+.-
T Consensus 88 -~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 88 -NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred -hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999998776655 888888877777777777765543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0053 Score=64.18 Aligned_cols=183 Identities=13% Similarity=-0.011 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGM 98 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~ 98 (575)
...+.++..+..-.+|++.+.+-.-+. .-|.+...+|.+.....++..+++.+.|.++||.-+-|++..+......++.
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~ 346 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT 346 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 334444444454455555544443332 3466778899999999999999999999999997334456655555555553
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCC-CCCCcccccchhhhh
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF-DATTDEGVKGINSFF 177 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~ 177 (575)
..+..... +.| ..+.++....+.|....+..|.-..+..|.. |..| +.-.
T Consensus 347 ~~l~~~t~----------------~~~------~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSs 397 (480)
T KOG2563|consen 347 LMLLTCTL----------------FLG------DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSS 397 (480)
T ss_pred HHHHHhhc----------------cCC------ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccc
Confidence 22222111 111 3455677777888888889999889888875 5444 2223
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccc---chhHh-HHHHHHHHHHHHHHHhccceEEe
Q 008158 178 NWYYTTFTVVILITQTVLVYIQDSVS---WVIGF-GIPTVLMIGAIILFLVGKKLYVL 231 (575)
Q Consensus 178 ~~~~~~~~ig~~~~~~v~~~l~~~~g---w~~~f-~~~~~~~~i~~~~~~~~~~~~~~ 231 (575)
+..+...++-+.+-.+.-+...+..+ |.+.. +......++.+++..+.++++++
T Consensus 398 Gll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 398 GLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred eeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 33333334434343444444444443 33322 22334444555555666665544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.003 Score=69.45 Aligned_cols=126 Identities=11% Similarity=0.182 Sum_probs=94.1
Q ss_pred cchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHH
Q 008158 374 VISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQL 453 (575)
Q Consensus 374 ~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 453 (575)
++..++.+++..+ ..++.||++|| ..+.+++++..++-+..++. .+++...+.-
T Consensus 125 s~~~~G~~vG~~i----~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~a---------------~~~~~~~~~R 178 (521)
T KOG0255|consen 125 SLFFLGVLVGSLI----FGPLSDRFGRK-------PVLLVSLLLFIIFGILTAFA---------------PNYWMFLIFR 178 (521)
T ss_pred HHHHHHHHHHHhh----heehHhhcccH-------HHHHHHHHHHHHHHHHHHHh---------------CcHHHHHHHH
Confidence 3444444444333 34458887666 44777777777776665544 4677788888
Q ss_pred HHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHH
Q 008158 454 ILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFL 533 (575)
Q Consensus 454 ~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 533 (575)
++.|++.+........++.|..+++.|+.+..+ ....+.++.+++....++.. +| .+.+++
T Consensus 179 fl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W----------r~~~~~ 239 (521)
T KOG0255|consen 179 FLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW----------RWLFWI 239 (521)
T ss_pred HHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH----------HHHHHH
Confidence 999999999999999999999999999999999 88888888888888887764 56 567777
Q ss_pred HHHHHHHHHHH
Q 008158 534 IAGLGGLNIVY 544 (575)
Q Consensus 534 ~a~i~~v~~i~ 544 (575)
..+..++.+++
T Consensus 240 ~~~~~~~~~~~ 250 (521)
T KOG0255|consen 240 ISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHH
Confidence 77777666555
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.067 Score=58.70 Aligned_cols=174 Identities=7% Similarity=-0.049 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHH-HHHHHHH-HHH
Q 008158 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTIT-FASIAAI-LGM 98 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-~~~~l~~-~~~ 98 (575)
.+....++...+..+.-....-.+...+|-+....+.+++++.++..+++.++|+++++. -|+.... ++..+.. ++.
T Consensus 18 ~l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~ 96 (521)
T PRK03612 18 LLLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSA 96 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHH
Confidence 344444455555455555666677777898999999999999999999999999887552 3332211 1111111 111
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhH
Q 008158 99 LTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFN 178 (575)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 178 (575)
.+........ ......++...++.++..|+..|....+..+... ++ -++..+
T Consensus 97 ~ll~~~~~~~---------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g 148 (521)
T PRK03612 97 LILYAAFAFQ---------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVA 148 (521)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhh
Confidence 1111111000 0011122333445677777777766555543222 11 355667
Q ss_pred HHHHHHHHHHHHHhhhhhhccc-cccc-hhHhHHHHHHHHHHHHHHH
Q 008158 179 WYYTTFTVVILITQTVLVYIQD-SVSW-VIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 179 ~~~~~~~ig~~~~~~v~~~l~~-~~gw-~~~f~~~~~~~~i~~~~~~ 223 (575)
..|...++|+++|.++.+++.- ..|- +..+.+..+..++++++.+
T Consensus 149 ~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~ 195 (521)
T PRK03612 149 TVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLW 195 (521)
T ss_pred hhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888776543 4564 3444444444444443333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.015 Score=59.62 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHH-hhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhccc-chHHHHHHHHHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYL-LKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIG-RFKTITFASIAAIL 96 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G-rr~~~~~~~~l~~~ 96 (575)
++.++....+.-.-.|....+...++ .+.+|+++.|.|-+.+...+.+.+.++.-.+..||..| -+-.+..++.++.-
T Consensus 262 ~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP 341 (451)
T KOG2615|consen 262 VLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVP 341 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHH
Confidence 33444444444444444444555555 45799999999999999999999999999999999733 34455555555555
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
..+....+. ....++.+..+-.+..+...++...++....|+++ ||..
T Consensus 342 ~~llls~~~--------------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~ 389 (451)
T KOG2615|consen 342 AFLLLSLAR--------------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTL 389 (451)
T ss_pred HHHHHhccc--------------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHH
Confidence 555555443 34567888888899999999999999999999887 9999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccc
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQD 200 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~ 200 (575)
.++......++=++||.++|.+..
T Consensus 390 ~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 390 NGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHHHHHHHhhhhhhheeEE
Confidence 999999999999999999988765
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.18 Score=56.79 Aligned_cols=325 Identities=9% Similarity=-0.061 Sum_probs=190.3
Q ss_pred HHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008158 39 NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVA 118 (575)
Q Consensus 39 ~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (575)
...++..--.+....+......++.....+..+.....+|-.-|+-..+..-....+++.++..+... +..
T Consensus 6 m~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a~-------- 76 (654)
T TIGR00926 6 MRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GAI-------- 76 (654)
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccC--------
Confidence 34444444445555667778888999999999999999999766667888777777787777776541 110
Q ss_pred CCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhc
Q 008158 119 KPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI 198 (575)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l 198 (575)
..........+....+.++.++..++-+.+.++..+.. +.+.+.+..+++++....+. +|..++..+
T Consensus 77 ---------~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf---~~~~~~~~~s~F~~fY~~iN-iGSlis~~i 143 (654)
T TIGR00926 77 ---------PSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF---EERQLSLRSRFFSFFYFAIN-AGSLISTII 143 (654)
T ss_pred ---------cccccchHHHHHHHHHHHHHhhccccccCchhhhHhhc---CccchhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 00111334455667788899999999999999998753 35567789999999887666 466777776
Q ss_pred ccccc-chh------HhHH-HHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCccccC
Q 008158 199 QDSVS-WVI------GFGI-PTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYD 270 (575)
Q Consensus 199 ~~~~g-w~~------~f~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (575)
..... +.. .|.. .++..++.++.++.....++.-++++.......++........+
T Consensus 144 ~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~---------------- 207 (654)
T TIGR00926 144 TPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR---------------- 207 (654)
T ss_pred HHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH----------------
Confidence 65443 221 2333 34444444444554444333222221111111111111110000
Q ss_pred CCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccc--hhhHHHhHhhhhhhHHHHHHHHHHHHhhccccc
Q 008158 271 PPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLC--SIQQVEEVKCLIKIIPIWAAGIISLTSISQQGT 348 (575)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 348 (575)
+. . +. ........|... .....++.+...+.+.++.....+++.+.++..
T Consensus 208 --------------------~~-----~-~~--~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q 259 (654)
T TIGR00926 208 --------------------KR-----F-ST--RSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQ 259 (654)
T ss_pred --------------------Hh-----h-cc--CCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 0 00 000000112111 111223456676777777777777777777655
Q ss_pred eeeeecccccccCCCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 008158 349 FTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLV 428 (575)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~ 428 (575)
....+..+++...+ ++...+.....++.+-.+...++...+..++..++ +| .-.+.+.+.-+.+.+.++.+.+.++
T Consensus 260 ~~s~~~~qa~~m~~-~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l-~~--~~~~ls~l~k~~iG~~la~la~~va 335 (654)
T TIGR00926 260 QGSRWTLQATRMDG-DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAI-AK--CGTRFTSLRKMAVGGLLAALSFFVA 335 (654)
T ss_pred chhHHHHHHHHhcC-ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHH-Hh--cCCCCChHHHHHHHHHHHHHHHHHH
Confidence 66665556665543 33233334456778888888777777666777776 22 1124567888888888888888888
Q ss_pred Hhhhh
Q 008158 429 ERGRR 433 (575)
Q Consensus 429 ~~~~~ 433 (575)
+....
T Consensus 336 ~~ve~ 340 (654)
T TIGR00926 336 ALVQL 340 (654)
T ss_pred HHHHH
Confidence 77777
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.074 Score=52.32 Aligned_cols=92 Identities=15% Similarity=0.226 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHH
Q 008158 406 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANS 485 (575)
Q Consensus 406 ~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g 485 (575)
+++..+.+|.+...++..+.......+ ....+.|.+.+..++.+.+....++....-..+.+|. .||++.|
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~~--------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvg 134 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSGR--------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVG 134 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCc--------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceeh
Confidence 566678889888888887776654332 1234667777766777778888888888888899985 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 008158 486 LLFCSFGFASYLSSLLITIVH 506 (575)
Q Consensus 486 ~~~~~~~lg~~l~~~l~~~i~ 506 (575)
+.-....|++.+-+.+...+.
T Consensus 135 ilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 135 ILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred hhhHHHHhHHHHHHHHHHHHc
Confidence 999999998888776665554
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.044 Score=61.30 Aligned_cols=174 Identities=13% Similarity=0.191 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHH-HHHHhhhhHHHhhhc-ccchHHHHHHHHHHHHHH
Q 008158 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGV-TNFAPLLGAFISDTY-IGRFKTITFASIAAILGM 98 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~-~~~~~~~~G~laD~~-~Grr~~~~~~~~l~~~~~ 98 (575)
..+....++.+.+-+..+++|.|+.++++.+.+.+..+++...+. ..++..++|++.-|+ +.-|.+..+.++...+..
T Consensus 396 ~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l 475 (735)
T KOG3626|consen 396 LVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL 475 (735)
T ss_pred HHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence 445688889999999999999999999999999999999888766 558888999999986 234455555555444443
Q ss_pred HHHH---HH--------------hhcCCCCCCC-----------CC---------CC-----CCCC--------------
Q 008158 99 LTVT---LT--------------AWLPQLHPPK-----------CD---------VA-----KPPF-------------- 122 (575)
Q Consensus 99 ~~~~---~~--------------~~~~~~~~~~-----------~~---------~~-----~~~~-------------- 122 (575)
+... +. .+.|....++ |+ .. +|=|
T Consensus 476 ~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~ 555 (735)
T KOG3626|consen 476 LFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNT 555 (735)
T ss_pred HHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCce
Confidence 3311 10 0011111111 11 10 1112
Q ss_pred --------------------CccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHH
Q 008158 123 --------------------GQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYT 182 (575)
Q Consensus 123 --------------------~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 182 (575)
+.|..........+++..++..+-.+...+....++-+..++++ |..++++..+
T Consensus 556 ~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG~~~~ 629 (735)
T KOG3626|consen 556 IYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALGFQWM 629 (735)
T ss_pred eeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhHHHHH
Confidence 22322212223334444444445455555667778888999988 9999999777
Q ss_pred HH-HHHHHHHhhhhhhccc
Q 008158 183 TF-TVVILITQTVLVYIQD 200 (575)
Q Consensus 183 ~~-~ig~~~~~~v~~~l~~ 200 (575)
.. .+|.+-+|++.|++.|
T Consensus 630 ~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 630 LIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred HHHHHhcCCchHhhhhhHh
Confidence 65 7889999999999875
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0079 Score=63.87 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCch--hHHHH
Q 008158 406 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH--MKSIA 483 (575)
Q Consensus 406 ~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~--~rg~~ 483 (575)
..++.+.+|.+++.+|.++++..+ ..+...+.+++.+.++|.++.=+.....+.|+.|++ .|-.+
T Consensus 90 G~~~tI~lGail~~iGh~~L~~~~-------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~g 156 (498)
T COG3104 90 GTRRTIVLGAILMAIGHLVLAISS-------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG 156 (498)
T ss_pred chhHHHHHHHHHHHHHHHHHhccc-------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCC
Confidence 344668999999999999988542 023445677788888999999999999999998752 35556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008158 484 NSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRY 554 (575)
Q Consensus 484 ~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~~ 554 (575)
.++..+..++|+.+++.+.+++.+.. +++..|...++-...+++.+++..++.+.
T Consensus 157 Ft~fY~~iNiGsl~~p~i~~~~~~~~----------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~ 211 (498)
T COG3104 157 FTLFYMGINIGSLIAPIITGLLAINY----------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKG 211 (498)
T ss_pred ccEEEEEeehHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence 77777888899999999999887643 45778888888888888888877555444
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.039 Score=57.87 Aligned_cols=125 Identities=16% Similarity=0.097 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCch---hHHHHHH
Q 008158 409 QRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDH---MKSIANS 485 (575)
Q Consensus 409 ~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~---~rg~~~g 485 (575)
+.+.+|.++..+|.+++.+....... ....+...+.+++.+.++|.+..=|....+..|+++++ .|.....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~ 75 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFN 75 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHH
Confidence 34778888888888886655321100 01234566788888999999999999999999999876 4555666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008158 486 LLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYK 555 (575)
Q Consensus 486 ~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~~~ 555 (575)
.+....++|..++..+.+++-+.. ++...|.+.++..+++++.++...++++++
T Consensus 76 ~fY~~in~G~~~~~~~~~~i~~~~----------------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 76 WFYWGINIGSLFSPTLVPYIQQNY----------------GWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred HHHHHHhhhhHhhcccchhhcccc----------------chhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 677888899999888887776532 456788888888888888877766666554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.03 Score=60.29 Aligned_cols=126 Identities=13% Similarity=0.204 Sum_probs=104.6
Q ss_pred HHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhH-HHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008158 39 NFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGA-FISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDV 117 (575)
Q Consensus 39 ~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G-~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (575)
.+..|++..+++++.+.+...+.......+..++.. .+.-. +|-|+++..|+....++....+++.
T Consensus 263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~------------ 329 (463)
T KOG2816|consen 263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFAT------------ 329 (463)
T ss_pred EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhc------------
Confidence 446788889999999999999999999999988887 55665 6999999999999999999999976
Q ss_pred CCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 008158 118 AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVY 197 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~ 197 (575)
+.+..+....+.++ .+...|..-++.+.+.++++ +|+.+++.+....+...++|.+-+.
T Consensus 330 --------------~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~~ 388 (463)
T KOG2816|consen 330 --------------ETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYGN 388 (463)
T ss_pred --------------cchhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHHH
Confidence 34455665555544 45667888899999999888 9999999999999999999988776
Q ss_pred c
Q 008158 198 I 198 (575)
Q Consensus 198 l 198 (575)
+
T Consensus 389 i 389 (463)
T KOG2816|consen 389 I 389 (463)
T ss_pred H
Confidence 5
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.0041 Score=68.41 Aligned_cols=175 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHH-HHHHHhhhhHHHhhhc-ccchHHHHHHHHHHHHHH
Q 008158 21 YILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGG-VTNFAPLLGAFISDTY-IGRFKTITFASIAAILGM 98 (575)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~-~~~~~~~~~G~laD~~-~Grr~~~~~~~~l~~~~~ 98 (575)
.......++.+..-++.+++|.|++.+|+.+.++++.+++...+ +..++.+++|++..|+ ++.|+++....+..+++.
T Consensus 309 ~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~ 388 (539)
T PF03137_consen 309 CLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV 388 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 33456777778888899999999999999999999999988877 5678999999999996 224455555554444443
Q ss_pred HHHH---H--HhhcCC--CCC---------------CCCCC------CCCCCCccCCCcchhhHHHHHHHHHHHHhccCC
Q 008158 99 LTVT---L--TAWLPQ--LHP---------------PKCDV------AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGI 150 (575)
Q Consensus 99 ~~~~---~--~~~~~~--~~~---------------~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~ 150 (575)
+... + -.+.+. +.. ..|.. ..+..+.|...=......+++..++..+..+..
T Consensus 389 ~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~ 468 (539)
T PF03137_consen 389 ILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMS 468 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhc
Confidence 3311 0 111110 100 11100 112456776541224555556655555555555
Q ss_pred ccccccccccCCCCCCcccccchhhhhHHHHHHH-HHHHHHHhhhhhhcccc
Q 008158 151 RPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTF-TVVILITQTVLVYIQDS 201 (575)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~ig~~~~~~v~~~l~~~ 201 (575)
........-+..|+++ |+.+.++..... -+|.+-||++.|++.|.
T Consensus 469 ~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 469 QVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ----------------------------------------------------
T ss_pred ccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 5555666778888887 999999977665 67889999999998875
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.2 Score=53.80 Aligned_cols=118 Identities=18% Similarity=0.172 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccC---CchhHHH
Q 008158 406 TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQF---PDHMKSI 482 (575)
Q Consensus 406 ~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~---p~~~rg~ 482 (575)
+++.-+.+|.++..++.+.++..... ..+.......+++..+|.++.....-+...|.. |.+ +|.
T Consensus 57 rr~~Y~~i~~~~~~~~~~~~~~~~~~-----------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~ 124 (433)
T PF03092_consen 57 RRKPYMIIGWLLGAVSALVLALLPAS-----------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGD 124 (433)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccc-----------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHH
Confidence 34566777777776666665554221 123334455567778888888888888887776 344 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008158 483 ANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 551 (575)
Q Consensus 483 ~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~ 551 (575)
.++.......+|+.++..+.+...+.. +.+..|.+.+.+.++..+..+++..+
T Consensus 125 lqS~~~~~~~~G~lv~~~l~G~l~~~~----------------~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 125 LQSFVWGVRSVGSLVGSLLSGPLLDSF----------------GPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcC----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 899999999999999999998877643 22345666677766666666655554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=95.17 E-value=5.7 Score=42.79 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 008158 449 LAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGH 514 (575)
Q Consensus 449 ~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~ 514 (575)
++...++..+..-.-+.+..++-.+.+.|..-|++|.+.|+.+++|+.--..+.-+..|..+...+
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~C 473 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVATC 473 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccccc
Confidence 444667777888888999999999999999999999999999999999888777777777655443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.9 Score=43.36 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008158 444 VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLIT 503 (575)
Q Consensus 444 ~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~ 503 (575)
.++|.+.+..+.-|+-.+..+...+--+.++.+++.|..+++...+...+|..+++.+.-
T Consensus 340 psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal 399 (409)
T KOG3880|consen 340 PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL 399 (409)
T ss_pred cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence 355555555555677667777777778889999999999999988888888887776653
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.39 E-value=16 Score=38.39 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008158 445 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLI 502 (575)
Q Consensus 445 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~ 502 (575)
+-++.+....++|+..+-.....+.++.+.+|++++..+..++...-..|-..|..+.
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3345566678889999999999999999999999999998888777777766666543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=92.23 E-value=3.3 Score=37.58 Aligned_cols=62 Identities=15% Similarity=0.263 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008158 445 SVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVH 506 (575)
Q Consensus 445 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~ 506 (575)
+.+.+++.-.+.|+|.+...++.-.++.+...++.+++-.++.......+.++|..+.-.+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888899999999999999999999999999999999999988888888877765554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.83 E-value=2.2 Score=45.71 Aligned_cols=116 Identities=15% Similarity=0.074 Sum_probs=71.8
Q ss_pred HHHHHhhhhHHHh---hhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHH
Q 008158 65 VTNFAPLLGAFIS---DTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLG 141 (575)
Q Consensus 65 ~~~~~~~~~G~la---D~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (575)
+..++..+.+.+. ++ +||++++.++..+..++.++.-+.. |...+ . +++...-..- ..+.....+.-+
T Consensus 291 g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~--p~dap-~----~~t~~~~~~~-~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 291 GEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSF--PNDAP-L----RPTDSPPLLF-TPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccc--cccCC-C----CCCccccccc-ccchhHHHHHHH
Confidence 3444444455554 55 5899999999998888777665532 32110 0 0000000000 113445666678
Q ss_pred HHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 008158 142 LLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLV 196 (575)
Q Consensus 142 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~ 196 (575)
++|++-++.....+.++++.+|+ + |..+++++-.-..++..++-....
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~~~-~------~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLYPD-D------RAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcC-c------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999999954 3 788888777766666655443333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.16 E-value=30 Score=37.29 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=98.6
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCC---hhhHHHHHHHHHH-HHHHHhhhhHHHhhhcccchHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMN---QTSAANILNIWGG-VTNFAPLLGAFISDTYIGRFKTITFASI 92 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~---~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~~~~~ 92 (575)
+.++.+...-+|-.+.++.+ --+++.+.++ +.....+-...-. +..+..++-+++.+++ -|.+++-+-..
T Consensus 27 ~kflpl~Ll~f~I~~ny~~l-----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~~~ 100 (509)
T COG3202 27 KKFLPLALLFFCILFNYNLL-----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYIILG 100 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHHHH
Confidence 44555444444444443322 3366666554 4455566666666 5667788889999995 99999988888
Q ss_pred HHHHHHHHHHHHhhcC--C-CCCCCCCC-----CCCCCCcc--CCCcchhhHHHHHHHHHHHHhccCCcc-ccccccccC
Q 008158 93 AAILGMLTVTLTAWLP--Q-LHPPKCDV-----AKPPFGQC--KSANSMQLGVLVMGLGLLSIGTGGIRP-CSIPFGVDQ 161 (575)
Q Consensus 93 l~~~~~~~~~~~~~~~--~-~~~~~~~~-----~~~~~~~~--~~~~~~~~~~l~~~~~l~g~g~g~~~~-~~~~~~~~~ 161 (575)
.+....+++++.-. | + +|+++.-+ ..|++... ..-+.++...+++.- -+=.....+ .-.++..|+
T Consensus 101 ~F~~fF~LFa~Vi~-P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~a---ELWgslV~S~lFw~faNei 176 (509)
T COG3202 101 FFLGFFALFAFVIY-PYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMA---ELWGSLVLSLLFWQFANEI 176 (509)
T ss_pred HHHHHHHHHHHHHh-ccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 88777777776542 2 2 22221100 11212111 111122333333321 111111111 345667788
Q ss_pred CCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 008158 162 FDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD 200 (575)
Q Consensus 162 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~ 200 (575)
+..+| -.|+++.++.+.|++.+++..+..++..
T Consensus 177 tt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 177 TTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 87766 7999999999999999999988888765
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=89.14 E-value=5.1 Score=39.43 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=38.3
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhc---c--ccccchhHhHHHHHHHHHHHHHHHhccceE
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYI---Q--DSVSWVIGFGIPTVLMIGAIILFLVGKKLY 229 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l---~--~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~ 229 (575)
+|+....+..++.++|.++.-+..-.- . ....|++++.+.+.+..+-++++.+..++.
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f 65 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF 65 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 466777777778888888765332211 1 123599999888887777777777666554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=88.65 E-value=15 Score=39.27 Aligned_cols=134 Identities=9% Similarity=0.076 Sum_probs=96.7
Q ss_pred HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008158 38 ANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDV 117 (575)
Q Consensus 38 ~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 117 (575)
..+..|+... |+++...|..=+...+....+.....++.+|+ |-.|+=+++......+...+..+-..|...
T Consensus 279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~~------ 350 (432)
T PF06963_consen 279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGSP------ 350 (432)
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCCC------
Confidence 3567888866 99999999999999999999999999999995 999988888887776666555543322100
Q ss_pred CCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhh
Q 008158 118 AKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL 195 (575)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~ 195 (575)
.+..+...++.+.++-=+|-=++=-+...++-|..|+++ |+...+..+...++--.+-..+.
T Consensus 351 ----------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 351 ----------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred ----------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 011233444444444444544455567777888888877 99999999988888887776554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=88.45 E-value=40 Score=36.78 Aligned_cols=140 Identities=11% Similarity=0.038 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHH-HHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcC--C-CCCCCC-CCC---CCCCC
Q 008158 52 QTSAANILNIWGG-VTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLP--Q-LHPPKC-DVA---KPPFG 123 (575)
Q Consensus 52 ~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~-~~~---~~~~~ 123 (575)
......+-....+ +..+...+-.+++|++ +|.+++-+....+..-..+.++.- .| . ++++.. |.. .+++.
T Consensus 57 ae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~~~~~~ 134 (491)
T PF03219_consen 57 AEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIIIIPFLGFFALFAFVL-YPNRDILHPDAFADKLLAILPPGF 134 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhhccchH
Confidence 3444444443333 3445566778999995 999988877776666555555432 23 1 222111 110 11111
Q ss_pred ccCCCcchhhHHHHHHHHHHHHhccCCcc-ccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 008158 124 QCKSANSMQLGVLVMGLGLLSIGTGGIRP-CSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD 200 (575)
Q Consensus 124 ~~~~~~~~~~~~l~~~~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~ 200 (575)
...- ...+.|...+.-++.-+=.....+ .-.++..|.++.+| -.|.++.+..+.|+|.+++..+..++.+
T Consensus 135 ~~~i-~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 135 KGFI-AMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 000111111111112121112122 45778888998877 8999999999999999999988777665
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.08 E-value=1.4 Score=46.62 Aligned_cols=91 Identities=16% Similarity=-0.054 Sum_probs=60.2
Q ss_pred CCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhh-C----------------CChhhHHHHHHHHHHHHHHHhhhhHHH
Q 008158 14 GGWKAMPYILGNETFERLATIGLLANFMVYLLKEY-H----------------MNQTSAANILNIWGGVTNFAPLLGAFI 76 (575)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-~----------------~~~~~~~~i~~~~~~~~~~~~~~~G~l 76 (575)
...|.++.++..+++.+++++...-+..-++-++. | -....-.|=+.++.+...+.+...-++
T Consensus 276 ~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l 355 (498)
T KOG0637|consen 276 VMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKL 355 (498)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 35578888888888888887766655555554321 1 111223344666777778888888999
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 008158 77 SDTYIGRFKTITFASIAAILGMLTVTLTA 105 (575)
Q Consensus 77 aD~~~Grr~~~~~~~~l~~~~~~~~~~~~ 105 (575)
.||+ |-|+.++.+...+.+++.+.++..
T Consensus 356 ~~~~-g~r~~y~~~~~~f~~~~~~~gl~~ 383 (498)
T KOG0637|consen 356 SRKF-GTRKRYWGGVNAFGLATGLAGLVL 383 (498)
T ss_pred HHhc-CcceEEeehhHHHHHHHHHHhhhh
Confidence 9995 977766666665666666666543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.64 E-value=42 Score=34.77 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHhh-----hccCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 008158 445 SVFWLAPQLILMGFCEAFNIIGQIEFF-----NKQFPDHMKSIANSLLF-CSFGFASYLSSLLITIVHG 507 (575)
Q Consensus 445 ~~~~~i~~~~l~g~g~~~~~~~~~~~~-----~~~~p~~~rg~~~g~~~-~~~~lg~~l~~~l~~~i~~ 507 (575)
+...++++=++.|++..+.+..-=++. ..-+|++..+...+... ..+.+-.++++.+..+..+
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~ 188 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD 188 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 566778888999999888887654444 33355555444444333 2333444444444444443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=80.94 E-value=9.4 Score=40.31 Aligned_cols=61 Identities=5% Similarity=-0.096 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhc
Q 008158 132 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYI 198 (575)
Q Consensus 132 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l 198 (575)
+.+..++..+..|+..|+.+.+....+.|..|+++ |...++...++-++|..++..++-++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56677777888999999999999999999988777 99999999999899998888776554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 575 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 5e-06 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 363 bits (934), Expect = e-120
Identities = 112/568 (19%), Positives = 206/568 (36%), Gaps = 56/568 (9%)
Query: 10 QKKPGGW-KAMPYILGNETFERLATIGLLANFMVYLLKEYH------MNQTSAANILNIW 62
W + +PYI+ +E ER + G+ +L+ + A ++ + +
Sbjct: 4 PVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSF 63
Query: 63 GGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPF 122
F PLLG +I+D + G++ TI + S+ +G + +
Sbjct: 64 VIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE----------------- 106
Query: 123 GQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYT 182
+ GL L+++G+GGI+P F DQFD F+ +Y
Sbjct: 107 --------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD---QSNKSLAQKAFDMFYF 155
Query: 183 TFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI 242
T + + + + FGIP VLM A + F +G+K Y+ + PE G
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215
Query: 243 GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNN-E 301
V+ +A + + + L +P L A ++V
Sbjct: 216 LPVIRSALLTKVEGKGNIGLVL--ALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273
Query: 302 LKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHL 361
+ V+ V+ +++I+ ++A + Q+ + + QA M +
Sbjct: 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP- 332
Query: 362 GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILS 421
P + ++ + + L +PF + VL PA+ ++ +T L+++G G+ + LS
Sbjct: 333 ---QWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV---KLTALRKMGAGIAITGLS 386
Query: 422 MIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKS 481
IV G ++ + +S+FW L+ F E +EF Q P MK
Sbjct: 387 WIVVGTIQLMMDGGSA------LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG 440
Query: 482 IANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLN 541
S S + L V T + + F+F AG L
Sbjct: 441 TIMSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFFF--AGFAILA 495
Query: 542 IVYFLYCARRYRYKSGIQSLEDQNDLEL 569
+ F AR Y+ + + +L
Sbjct: 496 AIVFALYARSYQMQDHYRQATGSENLYF 523
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 7e-14
Identities = 74/494 (14%), Positives = 166/494 (33%), Gaps = 74/494 (14%)
Query: 17 KAMPYILGNETFERLATIGLLANFMVYLLKEY-----HMNQTSAANILNIWGGVTNFAPL 71
+ + E +ER + G+ A + Y+ H+ + +AA+I+ I+ + +
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72
Query: 72 LGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSM 131
+G F++D IG + + + +LG + + A
Sbjct: 73 IGGFVADRIIGARPAVFWGGVLIMLGHIVL--------------------------ALPF 106
Query: 132 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILIT 191
L + L+ IGTG ++P + DE + ++ F+ + + I
Sbjct: 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLY----DEHDRRRDAGFSIFVFGINLGAFIA 162
Query: 192 QTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYK 251
++ Q++ + + F + + M ++++ G K + + A +
Sbjct: 163 PLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP-------HYLRPTDPLAPE 215
Query: 252 KRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQ 311
+ + L + + G + ++ + L ++ P
Sbjct: 216 EVKPLLVKVSLAVAGF-------IAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWM 268
Query: 312 WRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGT-FTVSQAMKMNRHLGPK--FQ-I 367
+ E ++ ++ IP++ A ++ Q A +++ P FQ +
Sbjct: 269 ISSVKVTSTEHLR-VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSL 327
Query: 368 PPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGL 427
P + + + LW A +K + + +G++F+ LS ++ +
Sbjct: 328 NPLFIMLYTPFFAWLWT---------AWKKN-----QPSSPTKFAVGLMFAGLSFLLMAI 373
Query: 428 VERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL 487
A +VS WL L+ E + K P S S+
Sbjct: 374 ------PGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW 427
Query: 488 FCSFGFASYLSSLL 501
F S S L++ L
Sbjct: 428 FLSSSVGSALNAQL 441
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 3e-06
Identities = 93/637 (14%), Positives = 178/637 (27%), Gaps = 210/637 (32%)
Query: 24 GNETFERLATIGLLANFMVYLLKEYHM--NQTSAANIL------NIWGGVTNFAPLLGAF 75
E ++ L N+ +L+ Q S + ++ FA
Sbjct: 75 QEEMVQKFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---- 129
Query: 76 ISDTYIGRFKTITF----------ASIAAILGML----TVTLTAWLPQLHPPKCDVAKPP 121
+ R + A I G+L T + + + +C K
Sbjct: 130 ----NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQC---KMD 181
Query: 122 F-------GQCKSANSMQLGVLVMGLGLLSIGTGGIRP--CSIPFGVDQFDATTDEGVKG 172
F C S + VL M LL I P S
Sbjct: 182 FKIFWLNLKNCNSPET----VLEMLQKLLYQ----IDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 173 INSFF-NWYYTTFTVVILITQTVLVYIQDSV--SWVI-GFGIP-TVLMI---GAIILFLV 224
+ + Y +++L +V + F + +L+ + FL
Sbjct: 234 LRRLLKSKPYEN-CLLVL----------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 225 GKKLY--VLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLP 282
L ++ + L+ Y L D P + VL+ P
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRPQ---------DLPRE--VLTTNP 327
Query: 283 LTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKC--LIKIIPIWAAGIISL 340
++I E DG + W + V C L II + + L
Sbjct: 328 RRL--------SIIA---ESIRDG--LATW-----DNWKHVNCDKLTTII---ESSLNVL 366
Query: 341 TSISQQGTFTVSQAMKMNRHLG--PK-FQIPPGTVGVISMITIGLW--LPFYDTVLVPAL 395
+ F L P IP + + +W + D ++V +
Sbjct: 367 EPAEYRKMF---------DRLSVFPPSAHIPTILLSL-------IWFDVIKSDVMVV--V 408
Query: 396 RKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLIL 455
K+ K+ +L+++ SI S+ + V+ + H + I+
Sbjct: 409 NKLHKY----SLVEKQPKESTISIPSIYLELKVKLENEYALH--------------RSIV 450
Query: 456 MGFCEAFNIIGQIEF--FNKQFPD---------HMKSIAN-------SLLFCSFGF---- 493
+ +NI + + D H+K+I + ++F F F
Sbjct: 451 ----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 494 ----------ASYLSSLLITIV----HGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGG 539
+ + + L + + + + L N I LD FL
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAI----LD---FLPK--IE 556
Query: 540 LNIVYFLYCARRYRYKSGIQ-SLEDQNDLELVDPTKQ 575
N++ +Y ++ +L +++ + KQ
Sbjct: 557 ENLI-------CSKYTDLLRIALMAEDEAIFEEAHKQ 586
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.89 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.86 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.36 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.27 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.16 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.14 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.02 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.68 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.1 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=289.50 Aligned_cols=448 Identities=16% Similarity=0.234 Sum_probs=293.6
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhh-----hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhh-cccch
Q 008158 11 KKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKE-----YHMNQTSAANILNIWGGVTNFAPLLGAFISDT-YIGRF 84 (575)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~-~~Grr 84 (575)
..+.++|..+.+....+++.+++|++..+++.|++++ +|++..+.+++.+.+.++..++.+++|+++|| + |||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r 85 (491)
T 4aps_A 7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GAR 85 (491)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cch
Confidence 3455677888888899999999999999999999998 99999999999999999999999999999999 6 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCC
Q 008158 85 KTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 164 (575)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 164 (575)
+++..+.++..++.+++++++ +.+.++++|++.|+|.+...++..++++|++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 86 PAVFWGGVLIMLGHIVLALPF--------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC--------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 999999999999999888765 556789999999999999999999999999998
Q ss_pred CCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEee---CCCCC-cch
Q 008158 165 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLV---EPEGS-IFS 240 (575)
Q Consensus 165 ~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~-~~~ 240 (575)
++ ++|+.++++++.+.++|..++|.+++++.+..|||+.|++.++..+++++++++..+++..+ ++++. ...
T Consensus 140 ~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
T 4aps_A 140 HD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPE 215 (491)
T ss_dssp CT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHH
T ss_pred cc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccc
Confidence 66 45788899999999999999999999999989999999998777766666655443332211 11111 111
Q ss_pred hHHHHHHH-------------HHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCC
Q 008158 241 GIGQVLVA-------------AYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGT 307 (575)
Q Consensus 241 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (575)
+..+.... .....+. . +..+................
T Consensus 216 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~--~-----------------------~~~~~~~~~~~~~~~~~~~~------ 264 (491)
T 4aps_A 216 EVKPLLVKVSLAVAGFIAIIVVMNLVGW--N-----------------------SLPAYINLLTIVAIAIPVFY------ 264 (491)
T ss_dssp HHHHHHHHCCCCCHHHHHHHHHHHHHSS--C-----------------------CTTHHHHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccC--c-----------------------ccccchhhhhHHHHHHHHHH------
Confidence 10000000 0000000 0 00000000000000000000
Q ss_pred CCCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhhccccceeeeecc-cccccCCCccccCccccccchhHhhHhhhhc
Q 008158 308 PVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGPKFQIPPGTVGVISMITIGLWLPF 386 (575)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 386 (575)
....|+... ....++++......++.....++..+.+..+....+.. ..+... ...+.......+..++..++
T Consensus 265 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 338 (491)
T 4aps_A 265 FAWMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYTPF 338 (491)
T ss_dssp HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHH
T ss_pred HHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHHHH
Confidence 000000000 01123334444444555555555555554443221111 111110 23455566677777777776
Q ss_pred ccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhh
Q 008158 387 YDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIG 466 (575)
Q Consensus 387 ~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~ 466 (575)
.+++ .||++||+. ...+.+.+|..+.+++++.+........ .....+.++.++.+++.+++.+...+.
T Consensus 339 ~~~l----~~r~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~ 406 (491)
T 4aps_A 339 FAWL----WTAWKKNQP--SSPTKFAVGLMFAGLSFLLMAIPGALYG------TSGKVSPLWLVGSWALVILGEMLISPV 406 (491)
T ss_dssp HHHH----HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHCC------CCTTCCTHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHH----HHHHhccCC--CchHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCccHHHHHHHHHHHHHHHHHHhHH
Confidence 5554 888877743 4566777888888888777665432110 011245666777888899999999999
Q ss_pred hHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 008158 467 QIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFL 546 (575)
Q Consensus 467 ~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~ 546 (575)
.++++.|.+|++.||+++|+.++...+|..+++.+.+++.+. ++.+.|...+++++++.++.+
T Consensus 407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988776542 234677777888887777777
Q ss_pred HHHhhcccc
Q 008158 547 YCARRYRYK 555 (575)
Q Consensus 547 ~~~~~~~~~ 555 (575)
++.++.+++
T Consensus 470 ~~~~~~~~~ 478 (491)
T 4aps_A 470 FLSKRIQGL 478 (491)
T ss_dssp HC-------
T ss_pred HHHHHHHHH
Confidence 665554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=281.79 Aligned_cols=482 Identities=22% Similarity=0.346 Sum_probs=285.3
Q ss_pred CCCcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhC------CChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc-cchH
Q 008158 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYH------MNQTSAANILNIWGGVTNFAPLLGAFISDTYI-GRFK 85 (575)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-Grr~ 85 (575)
+.++|.++.+....++.++++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~ 86 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN 86 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence 3445677778889999999999999999999999999 999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCC
Q 008158 86 TITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDAT 165 (575)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~ 165 (575)
++..+.++..++.++++++.. +.+.+++.|++.|++.+...++..++++|.+|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 141 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFEH-------------------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS 141 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSS-------------------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcc-------------------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc
Confidence 999999999999988887541 4567899999999999999999999999999987
Q ss_pred Ccccccchh---hhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhH
Q 008158 166 TDEGVKGIN---SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI 242 (575)
Q Consensus 166 ~~~~~~~r~---~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (575)
+ |+ ..+++++.+.++|..++|.+++++.+..||++.|++.+++.++..+++++..++.+++++++++..+.
T Consensus 142 ~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (524)
T 2xut_A 142 N------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215 (524)
T ss_dssp T------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------
T ss_pred c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhH
Confidence 7 64 45566999999999999999999988889999999888777666666555444332222221111111
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhh----hhccCCCCCCCCCCCCccc-----
Q 008158 243 GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAA----MIVDNNELKPDGTPVNQWR----- 313 (575)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----- 313 (575)
.+.+....++++.+. . ....+..............+.+......... ...+ .....+|+
T Consensus 216 ~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 283 (524)
T 2xut_A 216 LPVIRSALLTKVEGK-G----NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMG-------FVGAGASLQLERA 283 (524)
T ss_dssp -----------CTTH-H----HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHH-------HHHTGGGTHHHHS
T ss_pred HHHHHHHHhhhhccc-C----ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhc-------ccccchhhHHhhh
Confidence 111111111100000 0 0000000000000000000000000000000 0000 00000110
Q ss_pred --cchhhHHHhHhhhhhhHHHHHHHHHHHHhhccccceeeeecccccccCCCccccCccccccchhHhhHhhhhcccchh
Q 008158 314 --LCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVL 391 (575)
Q Consensus 314 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~ 391 (575)
..+.+..+++++......++.....++..+.+..+.+..+....+... + .+.+.+...+.++.++..++.+++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (524)
T 2xut_A 284 RKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVL 359 (524)
T ss_dssp CCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC-
T ss_pred hccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhh
Confidence 000011123344444444444444555555554443332222222110 0 1344555666777778888888775
Q ss_pred HHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhh
Q 008158 392 VPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFF 471 (575)
Q Consensus 392 ~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~ 471 (575)
.+..+|.++| .+..+.+.+|+++.+++++.+........ .....+.+++++.+++.+++++...+..++++
T Consensus 360 ~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 430 (524)
T 2xut_A 360 YPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD------GGSALSIFWQILPYALLTFGEVLVSATGLEFA 430 (524)
T ss_dssp --------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555655433 24556777888888887776654421100 00123556677788999999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 008158 472 NKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN-DIDAGRLDYFYFLIAGLGGLNIVYFLYCAR 550 (575)
Q Consensus 472 ~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~ 550 (575)
.+.+|++.||+++|+.++...+|+.+++.+.+.+.+... .+|..+ ..+ .....|++.+++++++.++++++.+
T Consensus 431 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 431 YSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998875320 123211 011 1123377777888887777776666
Q ss_pred hcccccc
Q 008158 551 RYRYKSG 557 (575)
Q Consensus 551 ~~~~~~~ 557 (575)
+++++++
T Consensus 505 ~~~~~~~ 511 (524)
T 2xut_A 505 SYQMQDH 511 (524)
T ss_dssp -------
T ss_pred Hhccchh
Confidence 6554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=254.59 Aligned_cols=401 Identities=12% Similarity=-0.031 Sum_probs=248.5
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
|+....+....++..+..+. .....+++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||+++..+.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKN-FALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-HHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 34444555555666555444 444455666678 9999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHH----HhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 96 LGMLTVTL----TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 96 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
++.+++++ +. +.+.++++|++.|++.+...+...+++.|.+|+++
T Consensus 104 ~~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~----- 152 (451)
T 1pw4_A 104 AVMLFMGFVPWATS--------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE----- 152 (451)
T ss_dssp HHHHHHHHCHHHHS--------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-----
T ss_pred HHHHHHHhhhhccc--------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-----
Confidence 99999988 65 45668999999999999999999999999999877
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHH
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAY 250 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (575)
|++++++.+.+.++|..++|.+++++.+..| ||+.|++.+++.++..++.++..++.++.....+ ..
T Consensus 153 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------- 220 (451)
T 1pw4_A 153 -RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP-IE---------- 220 (451)
T ss_dssp -HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS-CT----------
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC-hh----------
Confidence 9999999999999999999999999888888 9999998887666555444333222111000000 00
Q ss_pred HhhcccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhH
Q 008158 251 KKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKII 330 (575)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (575)
+..+ +.+ .+..+. . .....++..........+.++...
T Consensus 221 -----~~~~---~~~-----~~~~~~------~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 258 (451)
T 1pw4_A 221 -----EYKN---DYP-----DDYNEK------A-----------------------EQELTAKQIFMQYVLPNKLLWYIA 258 (451)
T ss_dssp -----TTCC---C-----------------------------------------------CCTHHHHHHTSSCHHHHHHH
T ss_pred -----hhcc---ccc-----ccchhh------h-----------------------hcccccccchHHHHHcCHHHHHHH
Confidence 0000 000 000000 0 000000000000000001111111
Q ss_pred H-HHHHHHHHHHhhccccceeeeecccccccCCCcccc-CccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChH
Q 008158 331 P-IWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQI-PPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLL 408 (575)
Q Consensus 331 ~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~ 408 (575)
. .+............. +.+.....+ ++. ..+.......++.++...+. ..+.||+.+ +++
T Consensus 259 ~~~~~~~~~~~~~~~~~-------~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~----g~l~~~~~~-----~~~ 320 (451)
T 1pw4_A 259 IANVFVYLLRYGILDWS-------PTYLKEVKH--FALDKSSWAYFLYEYAGIPGTLLC----GWMSDKVFR-----GNR 320 (451)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHBTTBSC--CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTST-----TCH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhc-----CCc
Confidence 1 111111111111111 111112121 111 11222333344444444433 333666511 122
Q ss_pred HHHHHHHHHHH-HHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHH
Q 008158 409 QRIGIGMIFSI-LSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL 487 (575)
Q Consensus 409 ~~i~ig~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~ 487 (575)
+.+.++..+.. ++++.+... ...+.+......++.|++.+...+..+.++.+.+|++.||++.|+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 387 (451)
T 1pw4_A 321 GATGVFFMTLVTIATIVYWMN-------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 387 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC-------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh-------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence 33444444443 444443322 1124555666667788888888888899999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 008158 488 FCSFGF-ASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 551 (575)
Q Consensus 488 ~~~~~l-g~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~ 551 (575)
++...+ |..+++.+.+.+.+.. ++...|.+.+++.+++.++.++..++
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999 9999999999988743 34677888888888877666665433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=246.28 Aligned_cols=413 Identities=11% Similarity=0.036 Sum_probs=226.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcch
Q 008158 52 QTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSM 131 (575)
Q Consensus 52 ~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (575)
....+++.+++.++..++++++|+++||+ |||++++++.+++.+++++++++........... .. ...-..
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-------~~-~~~~a~ 124 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-------TV-PVYLAG 124 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-------SC-CGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-------HH-HHHHhh
Confidence 45678899999999999999999999995 9999999999999999999986432111000000 00 000122
Q ss_pred hhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhhhhccc--------ccc
Q 008158 132 QLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQD--------SVS 203 (575)
Q Consensus 132 ~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~~~l~~--------~~g 203 (575)
+.+.++++|+++|+|.|+..+..+.+++|..|+++ |++..++.+.+..+|.++++.++..+.. ..+
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 67889999999999999999999999999999877 9999999999999999999877765533 235
Q ss_pred chhHhHHHHHHHHHHHHHHHhccc--eEEeeCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCccccCCCCcccccccC
Q 008158 204 WVIGFGIPTVLMIGAIILFLVGKK--LYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKL 281 (575)
Q Consensus 204 w~~~f~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (575)
||+.+.+..+..++.++..+...+ ++...+.+.+.. .+.+.....+....... .
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a---~~~l~~~~~~~~~~~~~---------------~------ 254 (491)
T 4gc0_A 199 WRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQA---EGILRKIMGNTLATQAV---------------Q------ 254 (491)
T ss_dssp HHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHH---HHHHHHHHHHHHHHHHH---------------H------
T ss_pred hHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHH---HHhHHHhcCCchhHHHH---------------H------
Confidence 777776665554444443332211 111111111111 11111110000000000 0
Q ss_pred CCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHHHHHHHHHHhhccccceeeeecccccccC
Q 008158 282 PLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHL 361 (575)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 361 (575)
+.....+.... . . ........++...... ..++........... +........
T Consensus 255 ---~~~~~~~~~~~--~------------~----~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~ 307 (491)
T 4gc0_A 255 ---EIKHSLDHGRK--T------------G----GRLLMFGVGVIVIGVM-----LSIFQQFVGINVVLY-YAPEVFKTL 307 (491)
T ss_dssp ---HHHHHHHHHHH--H------------T----THHHHSCCTHHHHHHH-----HHHHHHHTCHHHHHH-HHHHHHHHS
T ss_pred ---HHHHHHHhhhh--h------------h----hHHHHhcccHHHHHHH-----HHHHHHHhhhhHHHh-cchHHHHhc
Confidence 00000000000 0 0 0000000011110000 000000000000000 000000011
Q ss_pred CCccccCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCC
Q 008158 362 GPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPM 441 (575)
Q Consensus 362 ~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (575)
+ ...........+..+..++... +...+.||++|| +.+..+.....++++.++.....
T Consensus 308 ~-~~~~~~~~~~~~~~~~~~~~~~----~~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~---------- 365 (491)
T 4gc0_A 308 G-ASTDIALLQTIIVGVINLTFTV----LAIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT---------- 365 (491)
T ss_dssp S-CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred C-CCccchhhHHHHHHHHHHHHHH----HHHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHhc----------
Confidence 0 0000001111122222222222 233457787655 44566666666666665544321
Q ss_pred ccchhHHHHHHHHHHHHH-HHHHhhhhHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccC
Q 008158 442 SQVSVFWLAPQLILMGFC-EAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN 520 (575)
Q Consensus 442 ~~~~~~~~i~~~~l~g~g-~~~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~ 520 (575)
..+.+..+...++...+ .....|..+.+..|.+|++.|++++|+.+..+++++.+++.+.|.+.+.. |...
T Consensus 366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~ 437 (491)
T 4gc0_A 366 -QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLVA 437 (491)
T ss_dssp -TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHHH
T ss_pred -ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh
Confidence 11222222222222222 22345667889999999999999999999999999999999988765421 1000
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 008158 521 DIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLED 563 (575)
Q Consensus 521 ~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~~~~~~~~~~~ 563 (575)
..+....|++++++++++.++.+++.+|+|+++.+|.++.
T Consensus 438 ---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 438 ---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred ---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 0022356888899999999999999999999988876655
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-25 Score=232.56 Aligned_cols=176 Identities=11% Similarity=0.056 Sum_probs=145.5
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHH
Q 008158 15 GWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAA 94 (575)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~ 94 (575)
.++....+....++..+.. .....+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVAN-NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence 3444444444444444443 4556666778899999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHH---HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCccccc
Q 008158 95 ILGMLTV---TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 171 (575)
Q Consensus 95 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (575)
.++.+++ +.+. +.+.++++|++.|+|.+...+...++++|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----- 150 (438)
T 3o7q_A 102 ALGAALFWPAAEIM--------------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----- 150 (438)
T ss_dssp HHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT-----
T ss_pred HHHHHHHHhccccc--------------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh-----
Confidence 9999988 4433 67889999999999999999999999999999988
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhcc-cccc-------------------------chhHhHHHHHHHHHHHHHHHh
Q 008158 172 GINSFFNWYYTTFTVVILITQTVLVYIQ-DSVS-------------------------WVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 172 ~r~~~~~~~~~~~~ig~~~~~~v~~~l~-~~~g-------------------------w~~~f~~~~~~~~i~~~~~~~ 224 (575)
|++.+++.+.+.++|..++|.+++++. +..+ ||+.|++.++..++..+++++
T Consensus 151 -r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 -GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 5544 999998766655544444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-23 Score=218.29 Aligned_cols=165 Identities=15% Similarity=0.172 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008158 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTV 101 (575)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~ 101 (575)
+....++..+........ .+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+..+..++.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPA-IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh-hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHH
Confidence 344455555554434444 4456778999999999999999999999999999999995 99999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHH
Q 008158 102 TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY 181 (575)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 181 (575)
++++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+
T Consensus 83 ~~~~--------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 130 (375)
T 2gfp_A 83 VTTS--------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLN 130 (375)
T ss_dssp HHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHH
T ss_pred HHhc--------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHH
Confidence 8876 67789999999999999999999999999999877 999999999
Q ss_pred HHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHH
Q 008158 182 TTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 220 (575)
Q Consensus 182 ~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~ 220 (575)
...++|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888999999877765554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-22 Score=214.48 Aligned_cols=386 Identities=10% Similarity=0.009 Sum_probs=214.4
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
|..+.+....++...++..+.++++.|+++++|+|..+.+++.+.+.++..++++++|+++||+ ||||+++.+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 3444444555556566666778899999999999999999999999999999999999999995 999999988887655
Q ss_pred HHHHH---HHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 97 GMLTV---TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 97 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
+.... .++.. ....+..++.+.+++.+...+...+...+..++.. +++
T Consensus 86 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~ 136 (417)
T 2cfq_A 86 MFAPFFIFIFGPL-------------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRS 136 (417)
T ss_dssp CHHHHHHHTHHHH-------------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhc
Confidence 33211 12110 00012344455555444444443444444433211 235
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhh
Q 008158 174 NSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKR 253 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (575)
+..++..+...++|..++|.+++++.+ .+|++.|++.++..++.++..+..+++ .+++.+.
T Consensus 137 ~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------------- 197 (417)
T 2cfq_A 137 NFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD---APSSATV--------------- 197 (417)
T ss_dssp TCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC---CSCSSCS---------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc---ccccccc---------------
Confidence 666777777788999999999999876 689999987665543333322221111 0000000
Q ss_pred cccCCCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhhHHHH
Q 008158 254 RLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPIW 333 (575)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (575)
.+ +++ . +. ...+ ..+.. +..++ +..+......
T Consensus 198 ----~~---~~~------~-~~------~~~~---~~~~~------------------------~~~~~-~~~~~~~~~~ 229 (417)
T 2cfq_A 198 ----AN---AVG------A-NH------SAFS---LKLAL------------------------ELFRQ-PKLWFLSLYV 229 (417)
T ss_dssp ----SS---SSS------S-CC------CCCC---HHHHH------------------------HHTTC-HHHHHHHHHH
T ss_pred ----cc---ccc------c-cc------cccc---HHHHH------------------------HHhcC-CchhhHHHHH
Confidence 00 000 0 00 0000 00000 00001 1111111111
Q ss_pred HH-HHHHHHhhccccceeeeecccccccCCCccccCc---cccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHH
Q 008158 334 AA-GIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP---GTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQ 409 (575)
Q Consensus 334 ~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~ 409 (575)
.. ...+.....+.+.+.. ...+ ...... +....++.+..++...+ ..++.||+++| +
T Consensus 230 ~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~----~g~l~dr~g~~-------~ 290 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFT-------SFFA-TGEQGTRVFGYVTTMGELLNASIMFF----APLIINRIGGK-------N 290 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HTSS-SHHHHTHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCHH-------H
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHh-ccCCChhHHHHHHHHHHHHHHHHHHH----HHHHHHHhcHH-------H
Confidence 11 1111111111111110 0010 000001 11222333333333333 33347776443 4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHH-HH
Q 008158 410 RIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL-LF 488 (575)
Q Consensus 410 ~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~-~~ 488 (575)
.+.++..+.+++++..... .+.+.+++..++.+++.....+..+.+..|.+|++.||++.++ ++
T Consensus 291 ~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 355 (417)
T 2cfq_A 291 ALLLAGTIMSVRIIGSSFA---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC 355 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTC---------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 5666666666665544322 2334444555556677666777778899999999999999999 47
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008158 489 CSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCA 549 (575)
Q Consensus 489 ~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~ 549 (575)
+.+.+|+.+++.+.+++.+.. ++...|.+.+++++++.+..++..
T Consensus 356 ~~~~lg~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 356 FFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp TTHHHHHHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHhHHHHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhh
Confidence 888899999999999887642 456778888888777766655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.9e-12 Score=134.55 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=148.0
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcc--cchHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI--GRFKTITFASIAA 94 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~--Grr~~~~~~~~l~ 94 (575)
|.++.+....++....++++..+++.|+++.+|++..+.+++.+...++..++.++.|+++|| + |||+.+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 455666677777778888899999999998899999999999999999999999999999999 7 9999888777766
Q ss_pred H-HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 95 I-LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 95 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
. ++.++..+.. ..+.+.+.+..++.|++.+...+....+..|.+|+++ |
T Consensus 331 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 380 (451)
T 1pw4_A 331 VTIATIVYWMNP------------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------A 380 (451)
T ss_dssp HHHHHHHTTSCC------------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------H
T ss_pred HHHHHHHHHHhc------------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------h
Confidence 5 5554444321 1145566777788899888888888899999999877 9
Q ss_pred hhhhHHHHHHHHH-HHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhc
Q 008158 174 NSFFNWYYTTFTV-VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 174 ~~~~~~~~~~~~i-g~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
++++++++...++ |..++|.+.|++.+..||+..|++.+++.+++.++.++.
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999998999999998877777666655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.1e-11 Score=126.22 Aligned_cols=169 Identities=13% Similarity=0.060 Sum_probs=135.9
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHH-HhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVY-LLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~ 95 (575)
|..+......++.....+++..+++.| +++.+|++..+.+.+.+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 455556666667777777888999999 8888899999999999999999999999999999995 99999999998888
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhh
Q 008158 96 LGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 175 (575)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 175 (575)
++.++..+.. +.. ..+..++.|++.+...+...++..|.+|++ ++.
T Consensus 337 ~~~~~~~~~~--------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~ 382 (438)
T 3o7q_A 337 ALCLISAFAG--------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKY 382 (438)
T ss_dssp HHHHHHHHCC--------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHH
T ss_pred HHHHHHHHcC--------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccc
Confidence 8877776643 222 334447788999999999999989998842 566
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhcccccc-chhHhHHHHHHHHHHHHH
Q 008158 176 FFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIIL 221 (575)
Q Consensus 176 ~~~~~~~~~~ig~~~~~~v~~~l~~~~g-w~~~f~~~~~~~~i~~~~ 221 (575)
+.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.++.
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 666655 567999999999999999888 999998776655544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.6e-11 Score=125.85 Aligned_cols=162 Identities=6% Similarity=0.059 Sum_probs=120.8
Q ss_pred HHhhhhHHHHHHHHhhhhCC---ChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q 008158 31 LATIGLLANFMVYLLKEYHM---NQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWL 107 (575)
Q Consensus 31 ~~~~~~~~~l~~yl~~~l~~---~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~ 107 (575)
..++.....++.|+.+.++. +....+...++..++..++.++.|+++||+ |||+++..+..+..++.+..++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~~-- 310 (417)
T 2cfq_A 234 CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 33344445678888776653 234456777777778888899999999995 999999888888777765554432
Q ss_pred CCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHH-HHHHHHH
Q 008158 108 PQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNW-YYTTFTV 186 (575)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~i 186 (575)
+.+.+++..++.+++.+...+....+..|.+|++. |++..++ ++....+
T Consensus 311 ------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~l 360 (417)
T 2cfq_A 311 ------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQL 360 (417)
T ss_dssp ------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhH
Confidence 33445666666777766666667889999999866 8998888 4677789
Q ss_pred HHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhc
Q 008158 187 VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 225 (575)
Q Consensus 187 g~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~ 225 (575)
|..++|.++|++.+..|++..|.+.+++.+++.++.+..
T Consensus 361 g~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999888888888888777766666655443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-10 Score=122.93 Aligned_cols=185 Identities=9% Similarity=-0.006 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHH-----HHHHH
Q 008158 19 MPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTIT-----FASIA 93 (575)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~-----~~~~l 93 (575)
...+....++....++.....++.|+++.++.+..+.+.+.....++..++.++.|++.||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44444455556666677888899999998988878888889999999999999999999995 9986554 66666
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccch
Q 008158 94 AILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGI 173 (575)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 173 (575)
..++.++..+...... .....+.+.+.+..++.|++.+...+....+..|.+|++. |
T Consensus 364 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~ 420 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG-----------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------N 420 (491)
T ss_dssp HHHHHTTTHHHHHHCC-----------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------S
T ss_pred HHHHHHHHHHHHHhcC-----------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------H
Confidence 6666666555431100 0001145567777888999999999999999999999988 9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccce
Q 008158 174 NSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKL 228 (575)
Q Consensus 174 ~~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~ 228 (575)
+.+.++++...++|..+++.+.+++.+ .++.+.|++.+++.+++.++.++..++
T Consensus 421 g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 421 SQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876 467778877766666666555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.7e-09 Score=112.31 Aligned_cols=183 Identities=10% Similarity=0.053 Sum_probs=123.1
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
+.........++.....+.......+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3333444444444444444455556677778888888888888888889999999999999995 999999999988888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
+.+..+....... ......+.+.....+++ .+..+....+.+|.+|.+. |+.+
T Consensus 355 ~~~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~ 407 (491)
T 4gc0_A 355 GMFSLGTAFYTQA--------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKA 407 (491)
T ss_dssp HHHHHHHHHHTTC--------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHH
T ss_pred HHHHHHHHHhccc--------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHH
Confidence 8777665432110 11112222222222333 3345667789999999988 9999
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccc------cccchhHhHHHHHHHHHHHHHHHhccc
Q 008158 177 FNWYYTTFTVVILITQTVLVYIQD------SVSWVIGFGIPTVLMIGAIILFLVGKK 227 (575)
Q Consensus 177 ~~~~~~~~~ig~~~~~~v~~~l~~------~~gw~~~f~~~~~~~~i~~~~~~~~~~ 227 (575)
.++.+....+|.++++.+.+.+.+ ..++...|++.+++.+++.+..++..|
T Consensus 408 ~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 408 LAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 999999999999999887766543 235556777766666666555544333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-09 Score=108.58 Aligned_cols=161 Identities=9% Similarity=0.011 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHH-HHH
Q 008158 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA-AIL 96 (575)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l-~~~ 96 (575)
..+......++.....++...+++.|+++.+|.+..+.+.+.....++..++.++.|+++||+ ||+. ..+..+ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~--~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLM--WQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHHH--HHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence 344555566667777777888888999988999999999999999999999999999999995 8732 223333 222
Q ss_pred HHH--HHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchh
Q 008158 97 GML--TVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGIN 174 (575)
Q Consensus 97 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 174 (575)
+.. ...... ..+.+.+++..++.|++.+...+...++..|.+| ++ |+
T Consensus 277 ~~~~~~~~~~~------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g 325 (375)
T 2gfp_A 277 GLLMWIPDWFG------------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AG 325 (375)
T ss_dssp SSSSSHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HH
T ss_pred HHHHHHHhhhc------------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cc
Confidence 222 122211 0144556677788899999999999999999987 55 99
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhccccccchhHhHHHH
Q 008158 175 SFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPT 212 (575)
Q Consensus 175 ~~~~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~ 212 (575)
++.++.+...++|..++|.+.+++.+..+|+..+++.+
T Consensus 326 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 326 TAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999999999999988777877776533
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.9e-06 Score=88.36 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=93.2
Q ss_pred cchhHhhHhhhhcccchhHHHhhhh-hcCCCCCChHHHHHHHHHHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHH
Q 008158 374 VISMITIGLWLPFYDTVLVPALRKI-TKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQ 452 (575)
Q Consensus 374 ~i~~~~~~i~~~~~~~~~~~~~~r~-~~r~~~~~~~~~i~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 452 (575)
....++..+..++.++ +.||+ ++ ++.+.++.++..++.+..... ..+.+.+++.
T Consensus 61 ~~~~~~~~~~~~~~G~----l~dr~~g~-------r~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 115 (524)
T 2xut_A 61 HSFVIGVYFFPLLGGW----IADRFFGK-------YNTILWLSLIYCVGHAFLAIF--------------EHSVQGFYTG 115 (524)
T ss_dssp HHHHHHHHHTHHHHHH----HHTTSSCS-------HHHHHHHHHHHHHHHHHHHHT--------------SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhcc-------hHHHHHHHHHHHHHHHHHHHh--------------cccHHHHHHH
Confidence 3344444444443333 36665 43 355777777777777766643 1156667777
Q ss_pred HHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHH
Q 008158 453 LILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL---LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDY 529 (575)
Q Consensus 453 ~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~---~~~~~~lg~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 529 (575)
.++.|++.+...+....++.|.+|++.|+.+.+. .+....+|..+++.+.+.+.+.. +| .+
T Consensus 116 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~----------~~ 179 (524)
T 2xut_A 116 LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA----------AV 179 (524)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH----------HH
T ss_pred HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH----------HH
Confidence 8889999999999999999999999999877666 88888899999998888776532 33 56
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008158 530 FYFLIAGLGGLNIVYFLY 547 (575)
Q Consensus 530 ~f~~~a~i~~v~~i~~~~ 547 (575)
.|.+.+++.+++.+.+++
T Consensus 180 ~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 180 AFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777776666555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 575 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.18 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.15 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=7.1e-28 Score=252.71 Aligned_cols=159 Identities=16% Similarity=0.089 Sum_probs=135.3
Q ss_pred hHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008158 36 LLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKC 115 (575)
Q Consensus 36 ~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (575)
....+.++++ ++|+|.++.|++.+++.++..++.+++|+++||+ |||+++..+.++..+++++++++.....
T Consensus 43 ~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~------ 114 (447)
T d1pw4a_ 43 NFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS------ 114 (447)
T ss_dssp SHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS------
T ss_pred HHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh------
Confidence 3556667876 5899999999999999999999999999999995 9999999999999999998887543221
Q ss_pred CCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHHHHHHHHHHHHhhhh
Q 008158 116 DVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVL 195 (575)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~v~ 195 (575)
+...+++.|++.|++.|...+....+++|++|+++ |++++++++.+.++|..++|.++
T Consensus 115 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~ 172 (447)
T d1pw4a_ 115 ----------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLF 172 (447)
T ss_dssp ----------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhh
Confidence 55679999999999999999999999999999877 99999999999999999999888
Q ss_pred hhcccc-ccchhHhHHHHHHHHHHHHHHHh
Q 008158 196 VYIQDS-VSWVIGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 196 ~~l~~~-~gw~~~f~~~~~~~~i~~~~~~~ 224 (575)
+.+.+. .+||+.|++.+++.++..++.+.
T Consensus 173 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 202 (447)
T d1pw4a_ 173 LLGMAWFNDWHAALYMPAFCAILVALFAFA 202 (447)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhcccccchhhhhhHHHHHHHHHH
Confidence 876553 47999999877665555444444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.4e-23 Score=215.27 Aligned_cols=394 Identities=10% Similarity=-0.020 Sum_probs=228.9
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHH
Q 008158 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILG 97 (575)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~ 97 (575)
..+.+....++..+......+.++.|+++++|+|.++.|++.+++.++..+++++.|+++||+ ||||+++.+..+..++
T Consensus 8 ~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~~ 86 (417)
T d1pv7a_ 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 344555566666666666778899999999999999999999999999999999999999995 9999999999988888
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhh
Q 008158 98 MLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFF 177 (575)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 177 (575)
.....+....+. .....++.+.+.+.+.+...........+..++++ +++....
T Consensus 87 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 140 (417)
T d1pv7a_ 87 FAPFFIFIFGPL----------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEF 140 (417)
T ss_dssp HHHHHHHTHHHH----------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSCCH
T ss_pred HHHHHHhhhhhh----------------------HHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHHHH
Confidence 888777542110 11123344444444444444433333333332221 2355566
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHHhccceEEeeCCCCCcchhHHHHHHHHHHhhcccC
Q 008158 178 NWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTL 257 (575)
Q Consensus 178 ~~~~~~~~ig~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (575)
+........+..+++.+++++.+ .+|+..+........+..++.++..++.+..+++++ ++++. .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~ 205 (417)
T d1pv7a_ 141 GRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVAN-------------AVGAN-H 205 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSH-------------HHHSC-C
T ss_pred HHHhhhhcccccccccccccccc-ccccccccchhhHHHHHHHHHHHHhcccccchhhhh-------------hhhhh-c
Confidence 67777788899999999998876 455656655554444444444433332111111100 00000 0
Q ss_pred CCCCCCCCccccCCCCcccccccCCCcchhhhhhhhhhhccCCCCCCCCCCCCccccchhhHHHhHhhhhhh-HHHHHHH
Q 008158 258 PQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKI-IPIWAAG 336 (575)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 336 (575)
.. . . ..+. ......+..... .......
T Consensus 206 ~~----~--------------------~---~~~~-------------------------~~~~~~~~~~~~~~~~~~~~ 233 (417)
T d1pv7a_ 206 SA----F--------------------S---LKLA-------------------------LELFRQPKLWFLSLYVIGVS 233 (417)
T ss_dssp CC----C--------------------C---HHHH-------------------------HHHTTSSHHHHHHHHHHHHH
T ss_pred cc----c--------------------c---cccc-------------------------ccccccccccchhhhhHHHH
Confidence 00 0 0 0000 000000000000 0001111
Q ss_pred HHHHHhhccccceeeeecccccccCCCccc-cCccccccchhHhhHhhhhcccchhHHHhhhhhcCCCCCChHHHHHHHH
Q 008158 337 IISLTSISQQGTFTVSQAMKMNRHLGPKFQ-IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGM 415 (575)
Q Consensus 337 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~r~~~r~~~~~~~~~i~ig~ 415 (575)
............... ...... +.. ...........++..+...+ ...+.+|. ++.+.+.++.
T Consensus 234 ~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~r~-------~~~~~~~~~~ 296 (417)
T d1pv7a_ 234 CTYDVFDQQFANFFT----SFFATG--EQGTRVFGYVTTMGELLNASIMFF----APLIINRI-------GGKNALLLAG 296 (417)
T ss_dssp HHHHHHHHHHHHHHT----TSSSCH--HHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHH-------CHHHHHHHHH
T ss_pred HHHHhhhcccccccc----cccccc--ccchhhhcccccccccccccchhh----hhhhhccc-------ccccchhhhH
Confidence 111111000000000 000000 000 00111112222333333333 33335554 3446677777
Q ss_pred HHHHHHHHHHHHhHhhhhcccccCCCccchhHHHHHHHHHHHHHHHHHhhhhHHhhhccCCchhHHHHHHHH-HHHHHHH
Q 008158 416 IFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLL-FCSFGFA 494 (575)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~rg~~~g~~-~~~~~lg 494 (575)
++..++.+..... .+.+..++..++.+++.+...+....++.|.+|++.|+++.++. ++...+|
T Consensus 297 ~~~~~~~~~~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 361 (417)
T d1pv7a_ 297 TIMSVRIIGSSFA---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp HHHHHHHHHHHTC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHH
T ss_pred HHHHHhhhccccc---------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 7777776666543 35666677778889999999999999999999999999999985 4667799
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008158 495 SYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYR 553 (575)
Q Consensus 495 ~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~i~~v~~i~~~~~~~~~~ 553 (575)
..+++.+.+++.|.. ++...|.+.++++++..++.++..++.+
T Consensus 362 ~~i~~~~~G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 362 MIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999998754 4567888888888887777776655443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=4.1e-11 Score=123.51 Aligned_cols=179 Identities=16% Similarity=0.051 Sum_probs=136.2
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHH
Q 008158 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (575)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~ 96 (575)
+..+......++.....++...+++.|+.+.++++..+.+.......+...++.+++|+++||+ +|++..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence 4455666667777777788899999999999999999999999999999999999999999995 887654444433333
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCccCCCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhh
Q 008158 97 GMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSF 176 (575)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 176 (575)
...........+ ..+.+...+..++.|++.++..+....+..|.+|++. |+++
T Consensus 328 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~ 380 (447)
T d1pw4a_ 328 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 380 (447)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred HHHHHHHHHhcc---------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 222222211100 1245566777778888888888888999999999877 9999
Q ss_pred hHHHHHHHHH-HHHHHhhhhhhccccccchhHhHHHHHHHHHHHHHHH
Q 008158 177 FNWYYTTFTV-VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFL 223 (575)
Q Consensus 177 ~~~~~~~~~i-g~~~~~~v~~~l~~~~gw~~~f~~~~~~~~i~~~~~~ 223 (575)
.++.+...++ |.+++|.+.|++.+..||+..|++.+++.+++.++..
T Consensus 381 ~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 381 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 9999888777 5677899999999999999998877666555555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=9.4e-12 Score=125.72 Aligned_cols=145 Identities=6% Similarity=0.061 Sum_probs=121.1
Q ss_pred hhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhhcccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCccC
Q 008158 47 EYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILGMLTVTLTAWLPQLHPPKCDVAKPPFGQCK 126 (575)
Q Consensus 47 ~l~~~~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (575)
+.+.+....+.......++..++..+.|++.||+ |||+++..+..+..++.+...+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 310 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT--------------------- 310 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC---------------------
T ss_pred ccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc---------------------
Confidence 4445666777788888889999999999999995 999999999999988888877754
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCccccccccccCCCCCCcccccchhhhhHHHH-HHHHHHHHHHhhhhhhccccccch
Q 008158 127 SANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINSFFNWYY-TTFTVVILITQTVLVYIQDSVSWV 205 (575)
Q Consensus 127 ~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~~~~~v~~~l~~~~gw~ 205 (575)
+.+.+++..++.|++.+...+...+++.|.+|++. |++.++..+ ....+|..++|.+.|++.+..||+
T Consensus 311 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~ 379 (417)
T d1pv7a_ 311 -----SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ 379 (417)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHH
T ss_pred -----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 56667888888999999999999999999999877 999999865 456799999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHh
Q 008158 206 IGFGIPTVLMIGAIILFLV 224 (575)
Q Consensus 206 ~~f~~~~~~~~i~~~~~~~ 224 (575)
..|++.+++.++..++.++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 380 GAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9998877665555554443
|