Citrus Sinensis ID: 008160

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----
Protein Sequence
MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPKTTAVDSTSKSSKDVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
Secondary Structure (PSIPRED)
ccccEEEEEEEcccEEEEEEEccccccccccHHHHHHHHHHHHccccccccEEEEEcccccEEEEcccHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHcccHHHHccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEEEccccccccccHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccEEEEEEEEcccccccccHHHHHHHHHHHHcccccccEEEEEEcccccEEEEcccHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccHHHcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccEEEccccccccccccEEEcccccccHHHHHHHHccccccEEEEccccccccccccccccccccccccccccccccccccEcccccccccccccccccccEEEEEccccccccccEEEEccccccccccEEEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEEEcccccccEEEcccccHccccccccccc
Coil and Loop (DISEMBL)
MESTMVIKVKYGDTLRRFnarvdenekldldIDGLRAKIKSLfnfphdsdltltyvdedgdivtlvddddlCDVMRQRLKFLRIDVhlnndkfgkayarssgsstplrspriqhplpdidsKISEILKSVPEPLREAISKLSTDVaskaastspmIADLVGCFskmglshvnvvpqsqygaessgkaeASENLMAhsvsndpnvskddglrevlpktnlkevfpktslkevlpkttavdstsksskdvdigIAARGVGVLLSSvdlnlppvdsapsgstmsiappasnitagddrmdanensvhqttsvpmstssvdpmwpsdvnqprtadlggnlstncpfsgipvanesagssrhprrghfkrgfnrDALMGMFhkgvrcdgcgvhpitgprfkskvkddydLCSICFAAmgseadyiridrpvhyrhprpfrglydhrqnfwlgtpgpdtqhvgalgaphilrdrgikpgrsrgsqlvwiggdkfsdgvsveievpadgvpvegeidiavdftapelpgryisywrmsspsgvkfgQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
Flexible Loop (DISEMBL)
mestmvikvkygdtlrrfnarvdenekldldIDGLRAKIKSLfnfphdsdltltyvdedGDIVTLVDDDDLCDVMRQRLKFlridvhlnndkfgkayarssgsstplrspriqhplpdidsKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSvsndpnvskddglrevlpktnlkevfpktslkevlpkttavdstsksskdvdiGIAARGVGVLLSSVDLNLPPVDsapsgstmsiapPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVAnesagssrhprrgHFKRGFNRDALMGMFHKGVRCDGCGVHPITgprfkskvkdDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHilrdrgikpgrsrgsqlvwiggdkfsdGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
Low Complexity Region (SEG)
MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVdedgdivtlvddddlcdvMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPkttavdstsksskdvdIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
Disordered region (IsUnstruct)
*****VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGK***********************************************************MIADLVGCFSKMGLSHVNVV*************************************************************************VDIGIAARGVGVLLSSVDL**************************************************************************************************RGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIK****RGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASY****
Disordered Region (DISOPRED)
**STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR************************************************************************************************************************************************************************************************************************************************************LSTNCPFSGIPVANESAGSSRHPRRGHF**********GMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRGSQLVWIGGDKFSD*********ADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESI********************
Disordered Region (DISEMBL)
MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAY***********SPRIQHPLPDIDSKISEILKSVPEPLREAISKL**********TSPMIADLVGCFSKMGLSHVNVVPQ*************SENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVL**************DVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANE****************DPMWPSDVNQPRTADLGGNLSTNCPFSGIPVA**********RRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
Disordered Region (DISPRO)
**STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNN**********************QHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGL************************************************************************************************DLNLPPVD****************************************TSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYA*DNLV*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPKTTAVDSTSKSSKDVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	575	2.2.26 [Sep-21-2011]
O95714	4834	E3 ubiquitin-protein liga	yes	no	0.118	0.014	0.357	6e-07
Q4U2R1	4836	E3 ubiquitin-protein liga	yes	no	0.118	0.014	0.357	8e-07
Q9P792	397	ZZ-type zinc finger-conta	yes	no	0.057	0.083	0.606	2e-05
Q5RC94	894	Next to BRCA1 gene 1 prot	no	no	0.288	0.185	0.258	0.0005
P34664	575	Uncharacterized protein Z	no	no	0.095	0.095	0.392	0.0007
Q5ZIJ9	954	E3 ubiquitin-protein liga	no	no	0.140	0.084	0.311	0.0007

>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 358  PRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM--GS 415
            P++ H+    +   L+   H GV CDGC + PI G RFK +  DD+D C  CF      +
Sbjct: 2684 PQQSHWTGLLSEMELVPSIHPGVTCDGCQMFPINGSRFKCRNCDDFDFCETCFKTKKHNT 2743

Query: 416  EADYIRIDRP 425
               + RI+ P
Sbjct: 2744 RHTFGRINEP 2753

E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3

 Score = 55.8 bits (133), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 358  PRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM--GS 415
            P++ H+    +   L+   H GV CDGC   PI G RFK +  DD+D C  CF      +
Sbjct: 2685 PQQSHWTGLLSEMELVPSIHPGVTCDGCQTFPINGSRFKCRNCDDFDFCETCFKTKKHNT 2744

Query: 416  EADYIRIDRP 425
               + RI+ P
Sbjct: 2745 RHTFGRINEP 2754

E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9P792|YN8B_SCHPO ZZ-type zinc finger-containing protein P35G2.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP35G2.11c PE=4 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 23/33 (69%)

Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSIC 409
           H+ V+CD C  HPI GPRF   V +DYDLCS C
Sbjct: 207 HRSVQCDNCLAHPIVGPRFHCLVCEDYDLCSSC 239

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 80/205 (39%), Gaps = 39/205 (19%)

Query: 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA-MGSEADYI--RIDRPV------ 426
           F   + C+ C    I G R++  +   Y++C  C A   G + +++  ++ RPV      
Sbjct: 211 FSWHIACNNCQRR-IVGVRYQCSLCPSYNICEDCEAGPYGHDTNHVLLKLRRPVVGSSEP 269

Query: 427 ----HYRHPRPFRGLYDHRQNFWLGTPG-------------PDTQHVGALGAPHILRDRG 469
                Y  PR    L   R      TP              PD  H+   G   I   R 
Sbjct: 270 FCHSKYSTPRLPAALEQVRLPLQPCTPVMPTLSAAFVDENLPDGTHLQP-GTKFIKHWRM 328

Query: 470 IKPGRSRGS-----QLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDI-AVDFTAPELPGR 523
              G  + S     + +W G    +     ++ VP       G + + +V+F AP L G 
Sbjct: 329 KNTGNVKWSADTKLKFMW-GNLTLASTEKKDVLVPCLKA---GHVGVVSVEFIAPALEGT 384

Query: 524 YISYWRMSSPSGVKFGQRVWVLIQV 548
           Y S+WR+S   G +FG RVW  I V
Sbjct: 385 YTSHWRLSH-KGQQFGPRVWCSIIV 408

Acts probably as a receptor for selective autophagosomal degradation of ubiquitinated targets.

Pongo abelii (taxid: 9601)

>sp|P34664|YOY6_CAEEL Uncharacterized protein ZK652.6 OS=Caenorhabditis elegans GN=ZK652.6 PE=4 SV=2

 Score = 46.2 bits (108), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVH-YRHP 431
           H+GV CDGC      G R+K     DYDLC  CF            D P+H   HP
Sbjct: 9   HEGVSCDGCAFTAFAGNRYKCLRCSDYDLCFSCFTTKNYGDQQTIADIPIHDESHP 64

Caenorhabditis elegans (taxid: 6239)

>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 360 RGHFKRGFN--------RDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFA 411
           R +++ GF          +A +G+ H  + CD C  H I G R+K K+  DYDLC+ C+ 
Sbjct: 61  RTNYRTGFQGAYDLLLYDNAQIGVRHPNIICDCCKKHGIRGMRWKCKMCFDYDLCTQCY- 119

Query: 412 AMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNF 444
            M ++ D           H +P   L   RQN 
Sbjct: 120 -MNNKHDLSHAFERYETAHSQPV--LVSPRQNL 149

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
359491205	836	PREDICTED: uncharacterized protein LOC10	0.944	0.649	0.430	1e-122
297733703	827	unnamed protein product [Vitis vinifera]	0.937	0.651	0.420	1e-116
255540511	754	zinc ion binding protein, putative [Rici	0.873	0.665	0.479	1e-113
449469725	789	PREDICTED: uncharacterized protein LOC10	0.864	0.629	0.402	6e-96
78068099	870	ubiquitin-associated protein [Triticum a	0.909	0.601	0.338	1e-66
93280150	467	Joka2 [Nicotiana plumbaginifolia]	0.699	0.860	0.405	1e-65
224133682	673	predicted protein [Populus trichocarpa]	0.353	0.301	0.603	2e-62
15233935	704	ubiquitin-associated (UBA) zinc-finger a	0.394	0.322	0.457	2e-59
337732515	843	JOKA2 [Nicotiana tabacum]	0.340	0.232	0.468	3e-58
297803642	709	ubiquitin-associated /TS-N domain-contai	0.396	0.321	0.451	4e-58

>gi|359491205|ref|XP_002277480.2| PREDICTED: uncharacterized protein LOC100253588 [Vitis vinifera]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 277/643 (43%), Positives = 376/643 (58%), Gaps = 100/643 (15%)

Query: 1   MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG 60
           MEST VIKVKYG+TLRRFNA +DEN +LDLDI+GLRAK+ +LFN   D+DLTLTY+DEDG
Sbjct: 1   MESTKVIKVKYGNTLRRFNACLDENGELDLDINGLRAKVITLFNLVPDADLTLTYIDEDG 60

Query: 61  DIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDID 120
           D+VTLVDD+DL DVMRQRLKFLRI V LN +K G+++ RSSGSSTP+RSP    P  D +
Sbjct: 61  DVVTLVDDEDLHDVMRQRLKFLRITVLLNIEKDGRSHTRSSGSSTPMRSPFNLRPFQDGN 120

Query: 121 SK----ISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQ 176
           +     ++E +KSVPEPL EA SKLSTD  SKAAS++P++++++ C SKMG S++N V  
Sbjct: 121 ADGNAGVAEFIKSVPEPLLEAFSKLSTDFTSKAASSAPVLSEVLTCLSKMGESYLNSVSP 180

Query: 177 SQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVL---P 233
           S+ GA+SS    +S+N +   V+ +    + D  +E+LP   LK+    + L EV    P
Sbjct: 181 SEVGADSSTHNRSSDNSVDPLVTENTKAPQADSKQELLPTAELKDS--NSKLNEVGTTGP 238

Query: 234 KTTAVDSTSKSSKDVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMS-IAPPASNITAG 292
            +  + S   ++ + +  + +      ++ V  N P VD        S  AP A +  A 
Sbjct: 239 VSRGIASNVPATDNKEANVESN-----VAPVASNDPSVDKRKETKKESKYAPIACSDCAN 293

Query: 293 DDRMDANENSVHQTTSVPMSTS-------------SVD-----------PMWPSDVNQPR 328
           D  +D  + +  ++   P++ S             SVD             W +   +P 
Sbjct: 294 DPSVDKRKETKKESKYPPVACSDCASDGRKGTKKGSVDHYGEKLADCVASTWNAGYPRPY 353

Query: 329 TADLG-------------------------GNLSTNCPFSGIPVANESAGSS-RHPRRGH 362
             D                           GN  ++CPF+G+P  N S  S+   PR   
Sbjct: 354 NPDPSHITCLDSGISKKISSDGRNYAAPNFGNPFSDCPFTGMPPVNNSLLSTGARPRPPL 413

Query: 363 FKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422
           FKR + +DA+ G FHKG++CDGCGVHPITGPRFKSKVK+DYDLCSICF+ MG+EADYIRI
Sbjct: 414 FKRSY-KDAMGGTFHKGIQCDGCGVHPITGPRFKSKVKEDYDLCSICFSDMGNEADYIRI 472

Query: 423 DRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGA---LGAPHI--------------- 464
           D P   +HP  F+  +D  Q   + +P      +G    +  PH+               
Sbjct: 473 DWPAR-QHPWSFKMSHDPMQQPEVHSPAQPYPSIGCGIRVRQPHLDSRFILDVNVIDGTV 531

Query: 465 ------------LRDRGIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIA 512
                       +R+ G     +RG++LVWIGGD+FS+  SVEI    D VP+  E++I+
Sbjct: 532 MAPSIPFTKTWRMRNTG-NAVWARGTRLVWIGGDRFSEKDSVEI--CRDCVPIGEELEIS 588

Query: 513 VDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESI 555
           VDFTAPE PGRYISYWRM++PSG  FGQRVWVLIQV  +L+ +
Sbjct: 589 VDFTAPEFPGRYISYWRMAAPSGQTFGQRVWVLIQVDSSLKDL 631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733703|emb|CBI14950.3| unnamed protein product [Vitis vinifera]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 268/638 (42%), Positives = 365/638 (57%), Gaps = 99/638 (15%)

Query: 1   MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG 60
           MEST VIKVKYG+TLRRFNA +DEN +LDLDI+GLRAK+ +LFN   D+DLTLTY+DEDG
Sbjct: 1   MESTKVIKVKYGNTLRRFNACLDENGELDLDINGLRAKVITLFNLVPDADLTLTYIDEDG 60

Query: 61  DIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDID 120
           D+VTLVDD+DL DVMRQRLKFLRI V LN +K        +    P+R P    P  D +
Sbjct: 61  DVVTLVDDEDLHDVMRQRLKFLRITVLLNIEK-----DDGNAGVAPMRPPFDLRPFQDGN 115

Query: 121 SKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYG 180
           + ++E +KSVPEPL EA SKLSTD  SKAAS++P++++++ C SKMG S++N V  S+ G
Sbjct: 116 AGVAEFIKSVPEPLLEAFSKLSTDFTSKAASSAPVLSEVLTCLSKMGESYLNSVSPSEVG 175

Query: 181 AESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVL---PKTTA 237
           A+SS    +S+N +   V+ +    + D  +E+LP   LK+    + L EV    P +  
Sbjct: 176 ADSSTHNRSSDNSVDPLVTENTKAPQADSKQELLPTAELKDS--NSKLNEVGTTGPVSRG 233

Query: 238 VDSTSKSSKDVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMS-IAPPASNITAGDDRM 296
           + S   ++ + +  + +      ++ V  N P VD        S  AP A +  A D  +
Sbjct: 234 IASNVPATDNKEANVESN-----VAPVASNDPSVDKRKETKKESKYAPIACSDCANDPSV 288

Query: 297 DANENSVHQTTSVPMSTS-------------SVD-----------PMWPSDVNQPRTADL 332
           D  + +  ++   P++ S             SVD             W +   +P   D 
Sbjct: 289 DKRKETKKESKYPPVACSDCASDGRKGTKKGSVDHYGEKLADCVASTWNAGYPRPYNPDP 348

Query: 333 G-------------------------GNLSTNCPFSGIPVANESAGSS-RHPRRGHFKRG 366
                                     GN  ++CPF+G+P  N S  S+   PR   FKR 
Sbjct: 349 SHITCLDSGISKKISSDGRNYAAPNFGNPFSDCPFTGMPPVNNSLLSTGARPRPPLFKRS 408

Query: 367 FNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPV 426
           + +DA+ G FHKG++CDGCGVHPITGPRFKSKVK+DYDLCSICF+ MG+EADYIRID P 
Sbjct: 409 Y-KDAMGGTFHKGIQCDGCGVHPITGPRFKSKVKEDYDLCSICFSDMGNEADYIRIDWPA 467

Query: 427 HYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGA---LGAPHI----LRDRGIKPGR----- 474
             +HP  F+  +D  Q   + +P      +G    +  PH+    + D  +  G      
Sbjct: 468 R-QHPWSFKMSHDPMQQPEVHSPAQPYPSIGCGIRVRQPHLDSRFILDVNVIDGTVMAPS 526

Query: 475 -----------------SRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTA 517
                            +RG++LVWIGGD+FS+  SVEI    D VP+  E++I+VDFTA
Sbjct: 527 IPFTKTWRMRNTGNAVWARGTRLVWIGGDRFSEKDSVEI--CRDCVPIGEELEISVDFTA 584

Query: 518 PELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESI 555
           PE PGRYISYWRM++PSG  FGQRVWVLIQV  +L+ +
Sbjct: 585 PEFPGRYISYWRMAAPSGQTFGQRVWVLIQVDSSLKDL 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540511|ref|XP_002511320.1| zinc ion binding protein, putative [Ricinus communis] gi|223550435|gb|EEF51922.1| zinc ion binding protein, putative [Ricinus communis]

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 280/584 (47%), Positives = 355/584 (60%), Gaps = 82/584 (14%)

Query: 1   MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG 60
           MEST+VIK K GDTLRRFNA ++EN  LDLD+ GLRAKI  LFNFP D+D  LTYVDEDG
Sbjct: 1   MESTLVIKAKCGDTLRRFNAPINENGLLDLDLSGLRAKILGLFNFPSDADFILTYVDEDG 60

Query: 61  DIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSS-GSSTPLRSPRIQHPLPDI 119
           D+VTLVDDDDL DVM Q LKFLR+DV L NDKF  + A+SS G+ST +RSPR Q PLP++
Sbjct: 61  DVVTLVDDDDLVDVMNQSLKFLRVDVQLKNDKFATSNAKSSCGTSTHMRSPRGQSPLPNL 120

Query: 120 DSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQY 179
           +  +++ILKSVPEPLREA+SKLS D+ASKAA ++ ++ADLV C SKMG S +N   Q Q 
Sbjct: 121 NGGVADILKSVPEPLREALSKLSLDLASKAACSNSVVADLVDCVSKMGQSFLNTAQQPQT 180

Query: 180 GAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPKTTAVD 239
           GA +S      EN ++ +    PN +     RE+                          
Sbjct: 181 GASASTYFGTVENPVSSAGPTMPNATNSGTSREL-------------------------- 214

Query: 240 STSKSSKDVDIGIAARGVGVLLSSVDLNL-PPVDSAPSGSTMSIAPPASNITAGDDRMDA 298
                ++DV + I       + + VDLNL PP DS  SG   +          GD+R   
Sbjct: 215 RAENVTRDVGMPITP-----VPAPVDLNLDPPCDSFLSGCATN---NFKQTVDGDNR-KK 265

Query: 299 NENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANE-SAGSSRH 357
           N+       S+P+   ++       ++   +    GN    CPFSG+PVAN+ SA  S  
Sbjct: 266 NKKQNFGRPSMPVKIGAL-------LDTSASVRPFGN---ECPFSGMPVANDLSAPPSVL 315

Query: 358 PRRGHFKRGFNR-DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSE 416
           PR   FK+   R D ++GMFH+GV+CDGCGVHPITG R+KSKV++DYDLCSICF+ MG+E
Sbjct: 316 PRVTPFKKSSGRNDGVVGMFHRGVQCDGCGVHPITGLRYKSKVREDYDLCSICFSEMGNE 375

Query: 417 ADYIRIDRPVHYRHPRPFRGLYDH---RQNFWLGTP-------GP--------DTQHV-- 456
           ADYI I RPV YR P  F+GL D    R   ++  P       GP        D+  V  
Sbjct: 376 ADYIMIARPVSYRRPHSFKGLQDPVYIRPMIYVSLPTDIMKPFGPKPLWGKLLDSHFVMD 435

Query: 457 -----GALGAPHI-------LRDRGIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVP 504
                G + AP         LR+ G      +GS+LVW  G+KFS   S E+E+PADG+P
Sbjct: 436 VNVLDGTVMAPSTPFTKIWRLRNSGTV-AWPQGSRLVWTEGNKFSCAYSAELELPADGLP 494

Query: 505 VEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQV 548
           V+GEIDIAVDF +P+LPGRY+S W+M+SPSG KFGQRVWVLI V
Sbjct: 495 VDGEIDIAVDFISPDLPGRYLSCWKMASPSGTKFGQRVWVLINV 538

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469725|ref|XP_004152569.1| PREDICTED: uncharacterized protein LOC101205935 [Cucumis sativus] gi|449487835|ref|XP_004157824.1| PREDICTED: uncharacterized LOC101205935 [Cucumis sativus]

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 241/599 (40%), Positives = 313/599 (52%), Gaps = 102/599 (17%)

Query: 1   MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG 60
           MESTMVIKV+YGD LRRF+ +VDEN +LDLDI+GLR+K+  LF+F  D+D  LTYVD+DG
Sbjct: 1   MESTMVIKVRYGDMLRRFSVKVDENNRLDLDINGLRSKVVDLFSFSSDTDFILTYVDDDG 60

Query: 61  DIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDID 120
           D+VTLV+ DDL ++M Q L FL+I+VHL N + G+++ +S GSST +     +    ++ 
Sbjct: 61  DVVTLVNGDDLDEMMSQHLSFLKINVHLRNKEKGQSHNKSDGSSTRMTP---ESSFQNVF 117

Query: 121 SKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYG 180
             ISE+LKS+PEPL E  S+L  D+ASKA + SP++++L   F ++G  + +   ++   
Sbjct: 118 PGISEVLKSMPEPLPEFCSQLLLDIASKAVA-SPVLSELAQSFIRLGNQNSHSSSRTSSV 176

Query: 181 AESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPKTTAVDS 240
            E S +  A+E      +  D   SK+D   +                 E   K      
Sbjct: 177 PEVSTQNVATE-CPTPPLGADSRASKNDDFHQ-----------------ETGSKFQCSGF 218

Query: 241 TSKSSKDVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITA-GDDRMDAN 299
           ++K+ K ++     +  G                P  S +SI  PA  I A      D  
Sbjct: 219 STKNRKIINSENVTKNTG---------------EPIASGLSIGKPA--IAARSSSSFDGK 261

Query: 300 ENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVA----------- 348
           E        + +  S   P             +       CPFSGIP A           
Sbjct: 262 EKEKRSDAFLKLGNSHCSP----------ATSVDRRFINECPFSGIPWAPQPYSRTAGIE 311

Query: 349 --------NESAGSSRHPRRGHFKRGFNRDALMG-MFHKGVRCDGCGVHPITGPRFKSKV 399
                    ESAGS  H  +G      +    +G MFHKGV CDGCG  PITGPRFKS+V
Sbjct: 312 PVSSSSGNTESAGSMFH--KGPIVNSSDYVGSVGNMFHKGVICDGCGARPITGPRFKSRV 369

Query: 400 KDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTP---------- 449
           KD+YDLCSICFA MG+EADYIRIDRPV  R+PR     ++HR  F L  P          
Sbjct: 370 KDNYDLCSICFAKMGNEADYIRIDRPVSCRYPR--MKAFNHR--FPLSGPRIIDPLRSSV 425

Query: 450 ---GPDTQHVGALG----------APHILRDRGIKPGRS---RGSQLVWIGGDKFSDGVS 493
                D+  V  +            P     R +  G S    GSQLVW GG KFS  +S
Sbjct: 426 KQTKLDSHFVADVNVFDGTVMTPRTPFTKIWRLLNSGTSNWPHGSQLVWTGGHKFSHSLS 485

Query: 494 VEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRAL 552
           VEIEVP DG+P   EI+IAVDFT P   G+Y SYW M+SPSG KFGQRVWVLIQV   L
Sbjct: 486 VEIEVPEDGLPPGQEIEIAVDFTTPPFCGQYTSYWSMASPSGHKFGQRVWVLIQVDEVL 544

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78068099|gb|ABB18390.1| ubiquitin-associated protein [Triticum aestivum]

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 211/623 (33%), Positives = 290/623 (46%), Gaps = 100/623 (16%)

Query: 5   MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT 64
           +V+KVKYGDTL+RFN  V+      L++  LR+KI S F F  D+D  LTY DEDGD+V 
Sbjct: 21  VVVKVKYGDTLKRFNGYVN-GTHFTLNLSALRSKIASAFKFAPDADFILTYTDEDGDVVM 79

Query: 65  LVDDDDLCDV-MRQRLKFLRIDVHLNNDKFGKAYARSSGSS------------------- 104
           L DD+DL D  + Q+L  LRI+V L N   G ++     SS                   
Sbjct: 80  LDDDEDLHDAAIHQKLNPLRINVQLKNSHAGASHINRQDSSPKPLEATTQDPIAQIKSVI 139

Query: 105 --------TPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMI 156
                    PLRS   + PL  + S + E +KS+ EP+ E+++KLS +V   A    P +
Sbjct: 140 DEALKPISEPLRSTAREDPLAHLKSALDEAMKSIHEPVPESLAKLSREVLDAAP---PQL 196

Query: 157 ADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREV--- 213
            DL+  F       VN++  S   ++S+G AE+S    +  V       K DG  +V   
Sbjct: 197 TDLIKPF-------VNLI-TSTNSSQSAGHAESSPG-SSRGVQQARVDLKADGQPKVEAS 247

Query: 214 LPKTNLKEVFPKTS----LKEVLPKTTAVDSTSKSSKDV--------DIGIAARGVGVLL 261
           L    L E  P +S    LK VL +  A   T  S            D+   +   G   
Sbjct: 248 LGSRPLNERNPVSSETGGLKSVLVEVPAAVITEASQGHQGSLYPSVEDLLYTSNSGGNSS 307

Query: 262 SSVDLNLPPVDSAPSG-STMSIAPPASNITAGDDRM---DANENSVHQTTSVPMSTSSVD 317
              D+     D+   G S M  A P +  T    R    +A+ N   QT       S   
Sbjct: 308 GCKDM----TDAQSKGKSVMPSAEPLARNTVPSFRPSHPNASGNEWFQTRRSVDGWSQPR 363

Query: 318 PMWPSDVNQPRTADLGGNLST-NCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMF 376
            +W  + N    +D G  +     P    PV +   G    P+  +  R  +   L G  
Sbjct: 364 SIWQPETNVKPASDPGWRVPMYKAPHPSPPVPHAPLGYGHSPQFPYPGRLLSAGRLYGNL 423

Query: 377 -----------HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRP 425
                      H+ ++CDGCGV PI GPR+KS VK+DYDLC  CF  MGSE +Y RID+P
Sbjct: 424 GNNSERSPRISHRWIQCDGCGVQPIVGPRYKSNVKEDYDLCDTCFCRMGSEVEYTRIDKP 483

Query: 426 V----HYRHPRPFRGLYDH----------RQNFWLGTPGPDTQHVGALGAPHILRDRGIK 471
           +      R P   R ++               F L      T   G L +P     +  +
Sbjct: 484 ILPHKLSRDPNLCRKIHSRAPMKSKREKLESRFILDV----TVLDGTLMSPSSPFTKIWR 539

Query: 472 PGRS------RGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 525
              +       G+QL+W+GGD+F+   SV +E+P +G PV+ E+D+AVDF AP  PGRYI
Sbjct: 540 MHNNGXIMWPLGTQLIWVGGDQFALQTSVPLEIPLNGFPVDQEMDVAVDFVAPARPGRYI 599

Query: 526 SYWRMSSPSGVKFGQRVWVLIQV 548
            YWR++SPSG KFGQRVWV IQV
Sbjct: 600 FYWRLASPSGQKFGQRVWVHIQV 622

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|93280150|gb|ABF06703.1| Joka2 [Nicotiana plumbaginifolia]

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 198/488 (40%), Positives = 256/488 (52%), Gaps = 86/488 (17%)

Query: 5   MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT 64
           +VIKVKY +TLRRFNARV  NEKLDL++DGL  KI  LFN   D++L LTYVDEDGD+VT
Sbjct: 2   IVIKVKYEETLRRFNARVI-NEKLDLNMDGLSDKIFQLFNIARDAELILTYVDEDGDVVT 60

Query: 65  LVDDDDLCDVMRQRLKFLRIDVHLN-NDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKI 123
           LVDD+DL DVMRQ L  LRI V LN  ++  +  +RSSGSSTPLRSPR+Q P P +    
Sbjct: 61  LVDDEDLQDVMRQDLNPLRISVRLNAAERSSRPSSRSSGSSTPLRSPRVQPPFPKLS--- 117

Query: 124 SEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAES 183
           + +LKSVPEPLRE + KL +D+ S+ +S++P+ A+LV   SKMGLS+        Y  + 
Sbjct: 118 TSVLKSVPEPLRETVMKLYSDLTSRTSSSAPIFAELVDGISKMGLSY--------YQNQP 169

Query: 184 SGKAEASENLMAHSVSNDPNVSKDDGL---REVLPKTNLKEVFPKTSLKEVLPKTTAVDS 240
           SG     E       SN   +  D G    +  +P  N  E  P T+L +      AV+S
Sbjct: 170 SGSQPVKETSFPSGESNGNTMVADGGNSNGKSGVPSINKNE--PHTALNDAGRTAKAVES 227

Query: 241 TSKSSKDVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASN--ITAGDDRMDA 298
             K    VD  + A  V +   S  L     ++ PS S     P A    + +G+++ D 
Sbjct: 228 EFKY---VDDALDA-WVKLKAKSKALEADRTETVPSSSE---GPKAHTLLVNSGEEK-DK 279

Query: 299 NENSVHQTTSVPMSTSSVDPMWPS-----------DVNQP-------------------R 328
              +      +  S +S  P+ P             V +P                   R
Sbjct: 280 KYGACPGGKPLAFSYNSASPVPPEKPSGEKPSKNHSVAKPVDMGGSASFGKLKQFSWDSR 339

Query: 329 TADLGGNL------------STNCPFSGIPV---------ANESAGS------SRHPRRG 361
            AD GG+             +  CPF  +P          ANE   S         P   
Sbjct: 340 NADSGGSSIKMPTLRLVPVPANECPFPQVPKNASRLVQVPANECPFSGVPNDPVPPPLEV 399

Query: 362 HFKRGFNR-DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYI 420
             KR  N  D    +FH+GVRCDGCGVHPITGPRF SKVK++YDLC ICFA MG++ADYI
Sbjct: 400 PLKRSHNHSDGTGTIFHRGVRCDGCGVHPITGPRFISKVKENYDLCIICFAEMGNDADYI 459

Query: 421 RIDRPVHY 428
           R+DRP+ Y
Sbjct: 460 RMDRPLTY 467

Source: Nicotiana plumbaginifolia

Species: Nicotiana plumbaginifolia

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133682|ref|XP_002321635.1| predicted protein [Populus trichocarpa] gi|222868631|gb|EEF05762.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 128/212 (60%), Positives = 156/212 (73%), Gaps = 9/212 (4%)

Query: 7   IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLV 66
           I+VKY DTLRRFNA V ENE+LDLD+  LR KI  LFNFP D+DLTLTY+DEDGD+VTL 
Sbjct: 1   IQVKYSDTLRRFNAHVKENEQLDLDMIALREKIFGLFNFPPDADLTLTYIDEDGDVVTLA 60

Query: 67  DDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEI 126
           DDDDL DVMRQ LKFLRIDV LNNDK GK+ ARSSGSSTP+RSPR+Q PLP +++ ++++
Sbjct: 61  DDDDLRDVMRQNLKFLRIDVQLNNDKSGKSNARSSGSSTPMRSPRVQSPLPCLNNGVADV 120

Query: 127 LKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGK 186
           LKSVPEPLRE +SK+S D+ SKA +++ ++ +LV CFSKMG  H+N   QS  G  +   
Sbjct: 121 LKSVPEPLREVLSKISLDLTSKAVASNTVLTELVDCFSKMGQYHLNPTSQSHDGIGAQTG 180

Query: 187 AEASENLMAHSVSNDPNVSKDDGLREVLPKTN 218
           A A   L         N SKD GL+E L   N
Sbjct: 181 ATAPTVL---------NASKDGGLKEDLLNLN 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233935|ref|NP_194200.1| ubiquitin-associated (UBA) zinc-finger and PB1 domain-containing protein [Arabidopsis thaliana] gi|4220521|emb|CAA22994.1| putative protein [Arabidopsis thaliana] gi|7269320|emb|CAB79379.1| putative protein [Arabidopsis thaliana] gi|17065502|gb|AAL32905.1| putative protein [Arabidopsis thaliana] gi|22136162|gb|AAM91159.1| putative protein [Arabidopsis thaliana] gi|22655264|gb|AAM98222.1| unknown protein [Arabidopsis thaliana] gi|30725524|gb|AAP37784.1| At4g24690 [Arabidopsis thaliana] gi|110735110|gb|ABG89125.1| p62-like [synthetic construct] gi|332659543|gb|AEE84943.1| ubiquitin-associated (UBA) zinc-finger and PB1 domain-containing protein [Arabidopsis thaliana]

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 170/271 (62%), Gaps = 44/271 (16%)

Query: 327 PRTADLGGNLSTNCPFSGIPVANESAGS----SRHPRR-GHFKRGFNRDAL--MGMFHKG 379
           P ++ LG N +  CPFSG    N S  +    ++HPRR  H K+  N D    +G+FHKG
Sbjct: 231 PNSSGLGANFN-ECPFSG-STMNYSCPNPVNLNKHPRRVCHSKKSTNGDYWTSLGVFHKG 288

Query: 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYD 439
           +RCDGCGV PITGPRFKSKVK+DYDLC+IC++ MG+E DY R+D+PV  +H  PFRG + 
Sbjct: 289 IRCDGCGVLPITGPRFKSKVKEDYDLCTICYSVMGNEGDYTRMDKPVSVQHLHPFRGPFT 348

Query: 440 HRQNFWLGTPGP----------------DTQHV-------GALGAPHI-------LRDRG 469
              N WL  P P                D++ V       G + AP         +R+ G
Sbjct: 349 QFPNPWLSHPVPRATNGGAPLRCTRPKLDSRFVLDVNVIDGTVVAPSAPFTKIWKMRNSG 408

Query: 470 --IKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISY 527
             + P   +G+Q+VWIGGD+F + +SV++++P +GVP+  E+D+ VDF APELPGRYISY
Sbjct: 409 SLVWP---QGTQIVWIGGDRFCNSLSVDLQIPKEGVPIYSELDVKVDFVAPELPGRYISY 465

Query: 528 WRMSSPSGVKFGQRVWVLIQVLRALESIAIS 558
           WRM++  G KFGQRVWVLI V  +L++  ++
Sbjct: 466 WRMATSDGAKFGQRVWVLIHVDASLKNSVVN 496

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337732515|gb|AEI71779.1| JOKA2 [Nicotiana tabacum]

 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 118/252 (46%), Positives = 146/252 (57%), Gaps = 56/252 (22%)

Query: 337 STNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFK 396
           +  CPFSG+P            +R H     + D    +FH+GVRCDGCGVHPITGPRF 
Sbjct: 388 ANECPFSGVPNDPVPPPLEVPLKRSHN----HSDGTGTIFHRGVRCDGCGVHPITGPRFI 443

Query: 397 SKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYD-HRQNFWLGTPGPDTQH 455
           SKV+++YDLCSICFA MG++ADYIR+DRP+ YRHP  F+GL+D H   F + T       
Sbjct: 444 SKVQENYDLCSICFAEMGNDADYIRMDRPLTYRHPLSFKGLHDLHAARFRIPT------- 496

Query: 456 VGALGAPHILRDRGIKPGRSR--------------------------------------- 476
                 PH+ R  G+KPGR +                                       
Sbjct: 497 -----VPHVSRGYGVKPGRPKLDSRFIQDVNILDGTIMAPLTRFTKIWRMRNNGNLVWPQ 551

Query: 477 GSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGV 536
           G+QLVWIGGD+ SD  SVE+E+    + V+ E+D+ VDFTAP  PGRYISYWRM+S SG 
Sbjct: 552 GTQLVWIGGDRLSDKFSVELEITTACLAVDKELDVTVDFTAPVHPGRYISYWRMASSSGQ 611

Query: 537 KFGQRVWVLIQV 548
           KFGQRVWVLIQV
Sbjct: 612 KFGQRVWVLIQV 623

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803642|ref|XP_002869705.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315541|gb|EFH45964.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 122/270 (45%), Positives = 164/270 (60%), Gaps = 42/270 (15%)

Query: 327 PRTADLGGNLSTNCPFSGIPV---ANESAGSSRHPRR-GHFKRGFNRDAL--MGMFHKGV 380
           P ++ LG N +  CPFSG  V          ++H RR  H K+  N D    +G+FHKG+
Sbjct: 236 PTSSGLGANFN-ECPFSGSTVNYSCPNPVNLNKHARRVCHSKKSTNGDYWTSLGVFHKGI 294

Query: 381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDH 440
           RCDGCGV PITGPRFKSKVK+DYDLC+IC++ MG+E DY R+D+PV  +H  PFRG +  
Sbjct: 295 RCDGCGVLPITGPRFKSKVKEDYDLCTICYSVMGNEGDYSRMDKPVSVQHLHPFRGQFTQ 354

Query: 441 RQNFWLGTPGPDTQH--------------------------VGALGAPHI----LRDRG- 469
             N W   P P T +                          V A  AP      +R+ G 
Sbjct: 355 FPNPWSIHPVPRTTNGSSPSRCTRPKLDSRFVLDVNVVDGTVVAPSAPFTKIWKMRNSGS 414

Query: 470 -IKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYW 528
            + P   +G+Q+VWIGGD+F + +SV++++P +GVP+  E+D+ VDF APELPGRYISYW
Sbjct: 415 LVWP---QGTQIVWIGGDRFCNSLSVDLQIPKEGVPIYSELDVKVDFVAPELPGRYISYW 471

Query: 529 RMSSPSGVKFGQRVWVLIQVLRALESIAIS 558
           RM+S  G KFGQRVWVLI V  +L++  ++
Sbjct: 472 RMASSDGAKFGQRVWVLIHVDASLKNSVVN 501

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
TAIR|locus:2121899	704	NBR1 "next to BRCA1 gene 1" [A	0.314	0.257	0.419	3.5e-84
DICTYBASE|DDB_G0270098	646	sqstm1 "sequestosome-1" [Dicty	0.139	0.123	0.388	8.9e-11
UNIPROTKB|C9JRJ8	140	SQSTM1 "Sequestosome-1" [Homo	0.12	0.492	0.361	7.1e-06
ASPGD|ASPL0000035364	800	AN10407 [Emericella nidulans (	0.166	0.12	0.309	4.2e-05
UNIPROTKB|E9PFW8	167	SQSTM1 "Sequestosome-1" [Homo	0.12	0.413	0.361	8.5e-05
ZFIN|ZDB-GENE-070718-6	4832	herc2 "hect domain and RLD 2"	0.092	0.010	0.452	8.6e-05
POMBASE|SPBP35G2.11c	397	SPBP35G2.11c "transcription re	0.095	0.138	0.409	0.00023
UNIPROTKB|F1NA86	393	SQSTM1 "Uncharacterized protei	0.158	0.231	0.346	0.00037
UNIPROTKB|G4ND39	869	MGG_00984 "ZZ type zinc finger	0.146	0.096	0.329	0.00054
UNIPROTKB|E3W990	190	SQSTM1 "Sequestosome-1" [Homo	0.085	0.257	0.450	0.00058

TAIR|locus:2121899 NBR1 "next to BRCA1 gene 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 3.5e-84, Sum P(3) = 3.5e-84
 Identities = 83/198 (41%), Positives = 116/198 (58%)

Query:   269 PPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSS-VDPMWPSDVNQP 327
             P      SG+++S   P+    AG  + D +E +  QT   P++ +        +  + P
Sbjct:   179 PVTKPGSSGASLSRDVPS----AGGKK-DISERT--QTGRKPVNLNEPTGAHSKTSGHVP 231

Query:   328 RTADLGGNLSTNCPFSGIPVANESAGS----SRHPRRG-HFKRGFNRD--ALMGMFHKGV 380
              ++ LG N +  CPFSG  + N S  +    ++HPRR  H K+  N D    +G+FHKG+
Sbjct:   232 NSSGLGANFN-ECPFSGSTM-NYSCPNPVNLNKHPRRVCHSKKSTNGDYWTSLGVFHKGI 289

Query:   381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDH 440
             RCDGCGV PITGPRFKSKVK+DYDLC+IC++ MG+E DY R+D+PV  +H  PFRG +  
Sbjct:   290 RCDGCGVLPITGPRFKSKVKEDYDLCTICYSVMGNEGDYTRMDKPVSVQHLHPFRGPFTQ 349

Query:   441 RQNFWLGTPGPDTQHVGA 458
               N WL  P P   + GA
Sbjct:   350 FPNPWLSHPVPRATNGGA 367

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005773 "vacuole" evidence=IDA

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0051258 "protein polymerization" evidence=IDA

DICTYBASE|DDB_G0270098 sqstm1 "sequestosome-1" [Dictyostelium discoideum (taxid:44689)]

 Score = 145 (56.1 bits), Expect = 8.9e-11, Sum P(3) = 8.9e-11
 Identities = 33/85 (38%), Positives = 46/85 (54%)

Query:   465 LRDRGIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRY 524
             LR+ G K      + L ++ GD+F     + + V   G     +IDI+VD  AP   GRY
Sbjct:   357 LRNDG-KTSWPENTTLSFLSGDRFQYQTDIFVPVCQPGQ----DIDISVDLVAPTKTGRY 411

Query:   525 ISYWRMSSPSGVKFGQRVWVLIQVL 549
               YWR+S+P G  FGQ +WV I V+
Sbjct:   412 TGYWRLSTPEGFGFGQSIWVDIYVI 436

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|C9JRJ8 SQSTM1 "Sequestosome-1" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 7.1e-06, P = 7.1e-06
 Identities = 26/72 (36%), Positives = 36/72 (50%)

Query:   359 RRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEAD 418
             RR H +    ++A   M H  V CDGC   P+ G R+K  V  DYDLCS+C    G    
Sbjct:    22 RRDH-RPPCAQEAPRNMVHPNVICDGCN-GPVVGTRYKCSVCPDYDLCSVC-EGKGLHRG 78

Query:   419 YIRIDRPVHYRH 430
             + ++  P  + H
Sbjct:    79 HTKLAFPSPFGH 90

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0070530 "K63-linked polyubiquitin binding" evidence=IEA

ASPGD|ASPL0000035364 AN10407 [Emericella nidulans (taxid:162425)]

 Score = 102 (41.0 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
 Identities = 34/110 (30%), Positives = 51/110 (46%)

Query:   477 GSQLVWIGGDKF--------SDGVSVEIEVPADGVPVEGEIDIAVDFT----APELPGRY 524
             GS + ++GGD          S   SV   + ++ +P   E   + +FT    AP   G  
Sbjct:   601 GSNVRFVGGDSMFNVDTNHPSSLESVTAAMESNKLPQPLEAGQSAEFTVNLKAPRRLGSA 660

Query:   525 ISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIP 574
             ISYWRM    G  FG R+W  IQV   L  +  + +    +N+++S K P
Sbjct:   661 ISYWRMKLADGTPFGHRLWCDIQVREDL--VPAADDRKDDNNIISSEKTP 708

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E9PFW8 SQSTM1 "Sequestosome-1" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 8.5e-05, P = 8.5e-05
 Identities = 26/72 (36%), Positives = 36/72 (50%)

Query:   359 RRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEAD 418
             RR H +    ++A   M H  V CDGC   P+ G R+K  V  DYDLCS+C    G    
Sbjct:    22 RRDH-RPPCAQEAPRNMVHPNVICDGCN-GPVVGTRYKCSVCPDYDLCSVC-EGKGLHRG 78

Query:   419 YIRIDRPVHYRH 430
             + ++  P  + H
Sbjct:    79 HTKLAFPSPFGH 90

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0070530 "K63-linked polyubiquitin binding" evidence=IEA

ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 8.6e-05, P = 8.6e-05
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query:   358 PRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
             P++ H+    +   L+   H GVRCDGC + PI GPRFK +  DD+D C  CF
Sbjct:  2680 PQQSHWTGLLSEMELVPSVHPGVRCDGCQMFPINGPRFKCRSCDDFDFCESCF 2732

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

POMBASE|SPBP35G2.11c SPBP35G2.11c "transcription related zf-ZZ type zinc finger protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 122 (48.0 bits), Expect = 0.00023, P = 0.00023
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query:   377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEA-DYIRIDR-----PVHYRH 430
             H+ V+CD C  HPI GPRF   V +DYDLCS C + +  +    +R+ R     P+H   
Sbjct:   207 HRSVQCDNCLAHPIVGPRFHCLVCEDYDLCSSCVSHVHHDHHSMLRLTREISASPLHLSK 266

Query:   431 P 431
             P
Sbjct:   267 P 267

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NA86 SQSTM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 120 (47.3 bits), Expect = 0.00037, P = 0.00037
 Identities = 34/98 (34%), Positives = 45/98 (45%)

Query:   359 RRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFA-AMGSEA 417
             RR H +   +++    M H  V CDGC   P+ G RFK  V  DYDLCS C    +  E 
Sbjct:    42 RREH-RSQCSQEPPRDMVHPNVICDGCQ-GPVVGARFKCTVCPDYDLCSTCEGKGIHKEH 99

Query:   418 DYIRIDRPVHYRHPRPFRGLYDHRQNF-WL---GTPGP 451
             + +    P+ Y   R  R +      F W+   G PGP
Sbjct:   100 NMVMFQSPLWYPRGRWLRKMRHGVPPFPWMHCWGYPGP 137

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043122 "regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0070530 "K63-linked polyubiquitin binding" evidence=IEA

UNIPROTKB|G4ND39 MGG_00984 "ZZ type zinc finger domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 101 (40.6 bits), Expect = 0.00054, Sum P(3) = 0.00054
 Identities = 32/97 (32%), Positives = 47/97 (48%)

Query:   464 ILRDRGIKPGRSRGSQLVWIGGD-------KFSDGVSVEIEVPADGV---PVE-GE-IDI 511
             +LR+ G  P  + G +L +IGGD       K    V   I      V   P+  G+    
Sbjct:   664 VLRNAGRHPWPA-GCRLKYIGGDYMGHVDSKRPAAVPELISASESTVCYAPLAPGQSFSF 722

Query:   512 AVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQV 548
              V    P   G+ ISYWR+++P G+KFG R+W  ++V
Sbjct:   723 TVLLRTPPRDGKVISYWRLTTPEGLKFGHRLWCDVEV 759

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E3W990 SQSTM1 "Sequestosome-1" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 0.00058, P = 0.00058
 Identities = 23/51 (45%), Positives = 29/51 (56%)

Query:   359 RRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSIC 409
             RR H +    ++A   M H  V CDGC   P+ G R+K  V  DYDLCS+C
Sbjct:   129 RRDH-RPPCAQEAPRNMVHPNVICDGCN-GPVVGTRYKCSVCPDYDLCSVC 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      575       541   0.00094  119 3  11 22  0.42    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  293 KB (2152 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  49.74u 0.10s 49.84t   Elapsed:  00:00:02
  Total cpu time:  49.74u 0.10s 49.84t   Elapsed:  00:00:02
  Start:  Tue May 21 07:46:45 2013   End:  Tue May 21 07:46:47 2013

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XV.1742.1 hypothetical protein (673 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	575
cd06398	91	cd06398, PB1_Joka2, The PB1 domain is present in t	7e-33
cd02342	43	cd02342, ZZ_UBA_plant, Zinc finger, ZZ type	6e-21
cd05992	81	cd05992, PB1, The PB1 domain is a modular domain m	6e-15
pfam00564	84	pfam00564, PB1, PB1 domain	2e-11
cd02249	46	cd02249, ZZ, Zinc finger, ZZ type	4e-11
smart00666	81	smart00666, PB1, PB1 domain	6e-11
cd02344	45	cd02344, ZZ_HERC2, Zinc finger, ZZ type	1e-09
cd02338	49	cd02338, ZZ_PCMF_like, Zinc finger, ZZ type	6e-09
cd02340	43	cd02340, ZZ_NBR1_like, Zinc finger, ZZ type	2e-08
cd02339	45	cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type	4e-08
pfam00569	46	pfam00569, ZZ, Zinc finger, ZZ type	1e-07
smart00291	44	smart00291, ZnF_ZZ, Zinc-binding domain, present i	4e-07
cd06401	81	cd06401, PB1_TFG, The PB1 domain found in TFG prot	5e-05
cd02341	48	cd02341, ZZ_ZZZ3, Zinc finger, ZZ type	2e-04
cd02334	49	cd02334, ZZ_dystrophin, Zinc finger, ZZ type	0.001
cd06397	82	cd06397, PB1_UP1, Uncharacterized protein 1	0.001
cd02335	49	cd02335, ZZ_ADA2, Zinc finger, ZZ type	0.002
cd06409	86	cd06409, PB1_MUG70, The MUG70 protein is a product	0.003

>gnl|CDD|99720 cd06398, PB1_Joka2, The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

 Score =  120 bits (303), Expect = 7e-33
 Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 6/92 (6%)

Query: 5  MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT 64
          +V+KVKYG TLRRF   V EN +LDL++DGLR K++ LF+   D+DL+LTY DEDGD+VT
Sbjct: 1  LVVKVKYGGTLRRFTFPVAEN-QLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVT 59

Query: 65 LVDDDDLCDVMRQ-----RLKFLRIDVHLNND 91
          LVDD+DL D ++      RL  LRIDV ++ D
Sbjct: 60 LVDDNDLTDAIQYFCSGSRLNPLRIDVTVDYD 91

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 91

>gnl|CDD|239082 cd02342, ZZ_UBA_plant, Zinc finger, ZZ type

 Score = 85.7 bits (212), Expect = 6e-21
 Identities = 31/43 (72%), Positives = 39/43 (90%)

Query: 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422
           ++CDGCGV PITGPR+KSKVK+DYDLC+ICF+ MG+E +Y RI
Sbjct: 1   IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMGNEGEYTRI 43

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding. Length = 43

>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

 Score = 69.6 bits (171), Expect = 6e-15
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 6  VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTL 65
           +KVKYG  +RRF           +  + LR+KI   F         L Y DEDGD+VT+
Sbjct: 2  RVKVKYGGEIRRFVVVSR-----SISFEDLRSKIAEKFGLD-AVSFKLKYPDEDGDLVTI 55

Query: 66 VDDDDLCDVMRQ----RLKFLRIDVH 87
            D+DL + + +      K LR+ V 
Sbjct: 56 SSDEDLEEAIEEARRSGSKKLRLFVF 81

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 81

>gnl|CDD|215996 pfam00564, PB1, PB1 domain

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 4  TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV 63
          T+ +K++YG  +RRF   V      +     LR+K++  F      D  L Y DEDGD+V
Sbjct: 1  TVRVKLRYGGGIRRF-LSVSPGISFE----ELRSKVEQRFGLD-RVDFKLKYPDEDGDLV 54

Query: 64 TLVDDDDLCDVMRQ----RLKFLRIDVH 87
          ++  D+DL + + +      K LR+ V 
Sbjct: 55 SITSDEDLEEAIEEARSLGSKTLRLHVF 82

Length = 84

>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type

 Score = 57.8 bits (140), Expect = 4e-11
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM 413
             CDGC   PI G R+   V +D+DLCS C+A  
Sbjct: 1   YSCDGCL-KPIVGVRYHCLVCEDFDLCSSCYAKG 33

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins. Length = 46

>gnl|CDD|214770 smart00666, PB1, PB1 domain

 Score = 58.4 bits (142), Expect = 6e-11
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 4  TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV 63
          T+ +K++YG   RR    V  +   +     LR+K+   F    +   TL Y DEDGD+V
Sbjct: 1  TVDVKLRYGGETRRL--SVPRDISFE----DLRSKVAKRFGLD-NQSFTLKYQDEDGDLV 53

Query: 64 TLVDDDDLCDVMRQ----RLKFLRIDVH 87
          +L  D+DL + + +      K LR+ V 
Sbjct: 54 SLTSDEDLEEAIEEYDSLGSKKLRLHVF 81

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. Length = 81

>gnl|CDD|239084 cd02344, ZZ_HERC2, Zinc finger, ZZ type

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
           V CDGC + PI GPRFK +  DD+D C  CF
Sbjct: 1   VTCDGCQMFPINGPRFKCRNCDDFDFCENCF 31

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Length = 45

>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
           V CDGCG    TG R+K  +  DYDLC+ C+
Sbjct: 1   VSCDGCGKSNFTGRRYKCLICYDYDLCADCY 31

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination. Length = 49

>gnl|CDD|239080 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 13/52 (25%)

Query: 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHP 431
           V CDGC   PI G R+K  V  DYDLC  C      EA        VH  H 
Sbjct: 1   VICDGCQ-GPIVGVRYKCLVCPDYDLCESC------EAK------GVHPEHA 39

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain. Length = 43

>gnl|CDD|239079 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 382 CDGCGVHPITGPRFKSKVKDDYDLCSICFA 411
           CD C    I G R+K     +YDLC+ C+ 
Sbjct: 3   CDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster. Length = 45

>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
           H    C+ C   PI G R+      DYDLC  CF
Sbjct: 2   HHVYTCNICKECPIIGFRYHCLRCFDYDLCQSCF 35

Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure. Length = 46

>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin, CREB-binding protein

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412
            H    CD CG  PI G R+   V  DYDLC  CFA 
Sbjct: 1   VHHSYSCDTCGK-PIVGVRYHCLVCPDYDLCQSCFAK 36

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy. Length = 44

>gnl|CDD|99722 cd06401, PB1_TFG, The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 5  MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLF--NFPHDSDLTLTYVDEDGDI 62
          +++K + GD +RR       NE  D+  D L   ++ +F        D+ + Y DEDGD+
Sbjct: 1  LILKAQLGDDIRRIPI---HNE--DITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDL 55

Query: 63 VTLVDDDDLC-DVMRQRLKFLRIDV 86
          +T+ D  DL   +   R+  L + V
Sbjct: 56 ITIFDSSDLSFAIQCSRILKLTLFV 80

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown. Length = 81

>gnl|CDD|239081 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 380 VRCDGCGVHPITGPRFKSK--VKDDYDLCSICF 410
            +CD CG+ PI G R+        D+DLC  C 
Sbjct: 1   FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCV 33

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Length = 48

>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
            +C+ C   PITG R++     +YDLC  CF
Sbjct: 1   AKCNICKEFPITGFRYRCLKCFNYDLCQSCF 31

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan. Length = 49

>gnl|CDD|99719 cd06397, PB1_UP1, Uncharacterized protein 1

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 35 LRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLN 89
          L +K+++L+N P    + +TY+D D D +TL  + +L D  R   +     + LN
Sbjct: 25 LASKLENLYNLPEIK-VGVTYIDNDNDEITLSSNKELQDFYRLSHRESTEVIKLN 78

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. Length = 82

>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSE 416
            CD C        R K     D+DLC  CF + G+E
Sbjct: 2   HCDYCSKDITGTIRIKCAECPDFDLCLECF-SAGAE 36

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Length = 49

>gnl|CDD|99730 cd06409, PB1_MUG70, The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 48 DSDLTLTYVDEDGDIVTLVDDDDLCDVMR--QRLKFLRIDVHL 88
               L+YVD++GDIV +  D DL   +   +     ++D+HL
Sbjct: 41 THLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGLKKLDLHL 83

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	575
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	99.86
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	99.78
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	99.73
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	99.46
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	99.46
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	99.46
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	99.46
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	99.46
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	99.39
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	99.39
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	99.39
KOG4582	278	consensus Uncharacterized conserved protein, conta	99.33
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	99.31
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	99.29
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	99.24
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	99.24
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	99.22
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	99.22
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	99.2
KOG4351	244	consensus Uncharacterized conserved protein [Funct	99.14
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	99.13
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	99.07
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	98.98
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	98.95
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	98.91
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	98.9
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	98.89
KOG1280	381	consensus Uncharacterized conserved protein contai	98.86
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	98.84
KOG4351	244	consensus Uncharacterized conserved protein [Funct	98.55
KOG4286	966	consensus Dystrophin-like protein [Cell motility;	98.35
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	98.14
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	97.97
KOG4301	434	consensus Beta-dystrobrevin [Cytoskeleton]	97.52
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.51
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	97.14
cd02336	45	ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present	97.13
KOG3606	358	consensus Cell polarity protein PAR6 [Signal trans	96.59
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.41
cd06399	92	PB1_P40 The PB1 domain is essential part of the p4	96.22
KOG0695	593	consensus Serine/threonine protein kinase [Signal	95.11
cd06395	91	PB1_Map2k5 PB1 domain is essential part of the mit	94.84
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	91.86
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	91.44
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	87.66
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	83.58
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	83.23

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=99.86  E-value=1.6e-21  Score=169.54  Aligned_cols=86  Identities=60%  Similarity=0.989  Sum_probs=80.3

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh-----cC
Q 008160            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-----RL   79 (575)
Q Consensus         5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q-----~l   79 (575)
                      ++|||+|||++|||++++++| +.++++..|++||++.|+|+++.+|+|+|+|||||+|+|++|+||.+|+..     ++
T Consensus         1 l~vKv~y~~~~rRf~l~~~~~-~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~   79 (91)
T cd06398           1 LVVKVKYGGTLRRFTFPVAEN-QLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRL   79 (91)
T ss_pred             CEEEEEeCCEEEEEEeccccc-cCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCC
Confidence            689999999999999999866 889999999999999999999999999999999999999999999999755     48


Q ss_pred             ceEEEEEEecCC
Q 008160           80 KFLRIDVHLNND   91 (575)
Q Consensus        80 ~~LritV~l~~~   91 (575)
                      ++|||+|+++++
T Consensus        80 ~~lrl~v~~~~~   91 (91)
T cd06398          80 NPLRIDVTVDYD   91 (91)
T ss_pred             ceEEEEEEEecC
Confidence            999999998763

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=99.78  E-value=6.8e-19  Score=149.92  Aligned_cols=79  Identities=29%  Similarity=0.582  Sum_probs=70.0

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhC--CCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFN--FPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL   82 (575)
Q Consensus         5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~--l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L   82 (575)
                      ++||+.||||+|||++|.+     ++.+.+|+++||++|+  +++.++|.|||+|+|||+|||.+++||.-| .|...+|
T Consensus         1 ~iiK~~~g~DiR~~~~~~~-----~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~dL~~A-~~~~~~~   74 (81)
T cd06401           1 LILKAQLGDDIRRIPIHNE-----DITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSSDLSFA-IQCSRIL   74 (81)
T ss_pred             CeEEEEeCCeEEEEeccCc-----cccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHHHHHHH-HhcCcce
Confidence            5899999999999999942     4557779999999995  889999999999999999999999999965 6667889


Q ss_pred             EEEEEec
Q 008160           83 RIDVHLN   89 (575)
Q Consensus        83 ritV~l~   89 (575)
                      +++++++
T Consensus        75 ~l~~~~~   81 (81)
T cd06401          75 KLTLFVN   81 (81)
T ss_pred             EEEEecC
Confidence            9999864

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=99.73  E-value=7.8e-18  Score=142.94  Aligned_cols=73  Identities=25%  Similarity=0.339  Sum_probs=65.3

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEE
Q 008160            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI   84 (575)
Q Consensus         5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lri   84 (575)
                      +.+||+|+|++|||+++.      ++++..|++||.++|+|++++ |.|||.|||||+|||+|++||.+|++|..+.+-+
T Consensus         1 ~~fKv~~~g~~RRf~~~~------~pt~~~L~~kl~~Lf~lp~~~-~~vtYiDeD~D~ITlssd~eL~d~~~~~~~~~~~   73 (82)
T cd06397           1 TQFKSSFLGDTRRIVFPD------IPTWEALASKLENLYNLPEIK-VGVTYIDNDNDEITLSSNKELQDFYRLSHRESTE   73 (82)
T ss_pred             CeEEEEeCCceEEEecCC------CccHHHHHHHHHHHhCCChhH-eEEEEEcCCCCEEEecchHHHHHHHHhcccccCc
Confidence            478999999999999984      778999999999999999876 9999999999999999999999998876553333

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>smart00666 PB1 PB1 domain

Probab=99.46  E-value=2.8e-13  Score=112.82  Aligned_cols=76  Identities=37%  Similarity=0.675  Sum_probs=65.4

Q ss_pred             ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhc----C
Q 008160            4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQR----L   79 (575)
Q Consensus         4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~----l   79 (575)
                      .+.||++||+++|||.++.      +..+.+|++||++.|++.. ..+.|+|.|||||+|+|.+|+||..|+...    .
T Consensus         1 ~~~vK~~~~~~~~~~~~~~------~~s~~dL~~~i~~~~~~~~-~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~~   73 (81)
T smart00666        1 TVDVKLRYGGETRRLSVPR------DISFEDLRSKVAKRFGLDN-QSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLGS   73 (81)
T ss_pred             CccEEEEECCEEEEEEECC------CCCHHHHHHHHHHHhCCCC-CCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcCC
Confidence            3789999999999999983      5668889999999999874 789999999999999999999999984322    3


Q ss_pred             ceEEEEE
Q 008160           80 KFLRIDV   86 (575)
Q Consensus        80 ~~LritV   86 (575)
                      +.|||.|
T Consensus        74 ~~l~l~v   80 (81)
T smart00666       74 KKLRLHV   80 (81)
T ss_pred             ceEEEEe
Confidence            5687776

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=99.46  E-value=2.8e-14  Score=109.76  Aligned_cols=43  Identities=47%  Similarity=1.020  Sum_probs=39.6

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcCCC--cccEEEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGS--EADYIRI  422 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n--~H~f~rI  422 (575)
                      |.||+|++.||.|.||||.+|.|||||+.||....+  .|.|.||
T Consensus         1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~~H~~~H~F~ri   45 (45)
T cd02344           1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKTRKHNTRHTFGRI   45 (45)
T ss_pred             CCCCCCCCCCCccCeEECCCCCCccchHHhhCCCCcCCCCceeeC
Confidence            689999999999999999999999999999998633  7999987

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=99.46  E-value=3.9e-13  Score=116.50  Aligned_cols=80  Identities=21%  Similarity=0.351  Sum_probs=68.4

Q ss_pred             eEEEEEeC-----CceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhc-
Q 008160            5 MVIKVKYG-----DTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQR-   78 (575)
Q Consensus         5 ~viKv~~g-----d~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~-   78 (575)
                      ++||+-+.     ..+|||.++.    ....++..|+++|+++|....+.+|+|+|+|||||+|||.+++||..|+... 
T Consensus         1 ~~vkayl~~~~~~~EIRRf~l~~----~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~   76 (87)
T cd06402           1 LTVKAYLLGKDANAEIRRFAIDE----DVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN   76 (87)
T ss_pred             CeEEEeecCCCCccceEEEEecC----CCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence            57899883     4799999984    3466788899999999987778999999999999999999999999986553 


Q ss_pred             CceEEEEEEe
Q 008160           79 LKFLRIDVHL   88 (575)
Q Consensus        79 l~~LritV~l   88 (575)
                      ..+|||.|+.
T Consensus        77 ~~~~RlyI~~   86 (87)
T cd06402          77 DDTFRIYIKE   86 (87)
T ss_pred             CCcEEEEEEe
Confidence            5689999864

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=99.46  E-value=2.8e-14  Score=108.46  Aligned_cols=43  Identities=72%  Similarity=1.507  Sum_probs=40.6

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcCCCcccEEEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI  422 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n~H~f~rI  422 (575)
                      |.||+|++.||+|.||||.+|.|||||+.||....|+..|++|
T Consensus         1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~n~~~y~~~   43 (43)
T cd02342           1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMGNEGEYTRI   43 (43)
T ss_pred             CCCCCCCCCcccccceEeCCCCCCccHHHHhhhhcChhheeeC
Confidence            6899999999999999999999999999999999998888875

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=99.46  E-value=6e-13  Score=110.98  Aligned_cols=78  Identities=42%  Similarity=0.694  Sum_probs=67.7

Q ss_pred             ceEEEEEeCCceee-eeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh----c
Q 008160            4 TMVIKVKYGDTLRR-FNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ----R   78 (575)
Q Consensus         4 ~~viKv~~gd~lRR-f~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q----~   78 (575)
                      ++.||+.|++++|| |.+..      +.++..|+.+|++.|.+. +.+|.|+|.|+|||+|+|.+|+||.+|+.+    .
T Consensus         1 t~~vK~~~~~~~~~~~~~~~------~~s~~~L~~~i~~~~~~~-~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~~~   73 (84)
T PF00564_consen    1 TVRVKVRYGGDIRRIISLPS------DVSFDDLRSKIREKFGLL-DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKESG   73 (84)
T ss_dssp             SEEEEEEETTEEEEEEEECS------TSHHHHHHHHHHHHHTTS-TSSEEEEEEETTSSEEEESSHHHHHHHHHHHHHCT
T ss_pred             CEEEEEEECCeeEEEEEcCC------CCCHHHHHHHHHHHhCCC-CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHhcC
Confidence            57899999999999 77773      447888999999999998 789999999999999999999999998433    3


Q ss_pred             CceEEEEEEe
Q 008160           79 LKFLRIDVHL   88 (575)
Q Consensus        79 l~~LritV~l   88 (575)
                      .+.|||.|+-
T Consensus        74 ~~~lrl~v~~   83 (84)
T PF00564_consen   74 SKTLRLFVQD   83 (84)
T ss_dssp             TSCEEEEEEE
T ss_pred             CCcEEEEEEe
Confidence            4579999864

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=99.39  E-value=2e-12  Score=110.76  Aligned_cols=77  Identities=27%  Similarity=0.440  Sum_probs=66.5

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHH----HhcCc
Q 008160            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM----RQRLK   80 (575)
Q Consensus         5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~----~q~l~   80 (575)
                      +.|||.||++++||++..      +.++.+|+++|++.|++.....|.|+|.|+|||+|+|..|.||.+|+    .....
T Consensus         1 ~~vK~~~~~d~~r~~l~~------~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~   74 (82)
T cd06407           1 VRVKATYGEEKIRFRLPP------SWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSH   74 (82)
T ss_pred             CEEEEEeCCeEEEEEcCC------CCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCC
Confidence            479999999999999994      56799999999999999755899999999999999999999999972    22346


Q ss_pred             eEEEEEE
Q 008160           81 FLRIDVH   87 (575)
Q Consensus        81 ~LritV~   87 (575)
                      .+||.|+
T Consensus        75 ~v~l~v~   81 (82)
T cd06407          75 TIRLLVH   81 (82)
T ss_pred             eEEEEee
Confidence            6777763

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=99.39  E-value=2.2e-12  Score=110.58  Aligned_cols=76  Identities=21%  Similarity=0.383  Sum_probs=66.9

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH---HHhcCce
Q 008160            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV---MRQRLKF   81 (575)
Q Consensus         5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a---~~q~l~~   81 (575)
                      +.|||.|+++++||.+.-.+    ...+.+|..+|+..|+|.   .|.|||.|+|||.|+|..+.||.+|   +....+.
T Consensus         1 V~vKaty~~d~~rf~~~~~~----~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~   73 (81)
T cd06396           1 VNLKVTYNGESQSFLVSDSE----NTTWASVEAMVKVSFGLN---DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNL   73 (81)
T ss_pred             CEEEEEECCeEEEEEecCCC----CCCHHHHHHHHHHHhCCC---cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCE
Confidence            57999999999999999522    346888999999999999   9999999999999999999999998   3445688


Q ss_pred             EEEEEE
Q 008160           82 LRIDVH   87 (575)
Q Consensus        82 LritV~   87 (575)
                      ||+.|.
T Consensus        74 l~~~v~   79 (81)
T cd06396          74 LQMNVY   79 (81)
T ss_pred             EEEEEe
Confidence            999983

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=99.39  E-value=2.2e-12  Score=106.95  Aligned_cols=76  Identities=38%  Similarity=0.632  Sum_probs=64.7

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhc----Cc
Q 008160            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQR----LK   80 (575)
Q Consensus         5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~----l~   80 (575)
                      +.||++|++++|||.+..     -+.++.+|+++|++.|++.. ..+.|+|.|+|||+|+|.+|+||..|+.+.    .+
T Consensus         1 ~~vK~~~~~~~~~~~~~~-----~~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~   74 (81)
T cd05992           1 VRVKVKYGGEIRRFVVVS-----RSISFEDLRSKIAEKFGLDA-VSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSK   74 (81)
T ss_pred             CcEEEEecCCCEEEEEec-----CCCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCc
Confidence            479999999999999993     26678889999999999986 899999999999999999999999986543    34


Q ss_pred             eEEEEE
Q 008160           81 FLRIDV   86 (575)
Q Consensus        81 ~LritV   86 (575)
                      .|+|-|
T Consensus        75 ~l~l~v   80 (81)
T cd05992          75 KLRLFV   80 (81)
T ss_pred             cEEEEe
Confidence            455544

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]

Probab=99.33  E-value=1.5e-12  Score=133.44  Aligned_cols=110  Identities=22%  Similarity=0.263  Sum_probs=73.9

Q ss_pred             CcCCCcccCc-----eecCCCCCCCcccceEEeccCCCCccchhhhhcC-C-CcccEEEEeCCcccCCCCCCCCcccccC
Q 008160          370 DALMGMFHKG-----VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-G-SEADYIRIDRPVHYRHPRPFRGLYDHRQ  442 (575)
Q Consensus       370 ~a~~~~vH~G-----V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-~-n~H~f~rI~~P~~~r~p~~~~~~~~~~~  442 (575)
                      ++..+.+|.+     +.||+|+..+|+|.||||++|.|||||+.|++.. + -.|.|+++.+-. ..    +.+... +.
T Consensus       138 ~~~~~~~H~~~~~~~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~~~h~~H~~lR~~t~~-t~----~~~~~~-~~  211 (278)
T KOG4582|consen  138 NPVVGEMHPNISKLSVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGNEHHAAHAMLRLHTNE-TP----FSGYVM-LS  211 (278)
T ss_pred             CCCccccCCCcccccccCCCccCCccccceeeecCCCccchhHHhhcCCCCCcccceeeccccc-CC----CCccee-cc
Confidence            7778999999     9999999889999999999999999999999985 4 479999965511 00    111000 00


Q ss_pred             CccCCCCCCcccCCCcccCC-----ceEEEe--cCCCCCCCCCeEEEecCccCC
Q 008160          443 NFWLGTPGPDTQHVGALGAP-----HILRDR--GIKPGRSRGSQLVWIGGDKFS  489 (575)
Q Consensus       443 ~~~~~~fv~Dv~pDGt~v~P-----KtWrvr--Gs~~~WP~Gt~LvfvgGd~m~  489 (575)
                      .   .+.+.+...-+-.+.|     +.|.++  |.. .|+.|+..-..+++...
T Consensus       212 ~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  261 (278)
T KOG4582|consen  212 S---PPNPVNLNKRPIFVGHSKVRGNDWYWTSLGGG-EGRIGRVNEIVLWINGP  261 (278)
T ss_pred             C---CCCcccccccccccccccccccCCccccccCC-CCCCccccccccccccc
Confidence            0   0111111111111222     677777  666 79999999888876543

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=99.31  E-value=1.1e-12  Score=100.98  Aligned_cols=43  Identities=33%  Similarity=0.694  Sum_probs=38.7

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcCC--CcccEEEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG--SEADYIRI  422 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~--n~H~f~rI  422 (575)
                      |.||+|+..||.|.||||.+|.|||||+.||....  ..|+|.++
T Consensus         1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~~~H~~~H~f~r~   45 (45)
T cd02339           1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYHGDKHDLEHRFYRY   45 (45)
T ss_pred             CCCCCCCCCCcccCeEECCCCCCccchHHHhCCCCCCCCCCEEeC
Confidence            57999998899999999999999999999998753  48999874

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=99.29  E-value=1.6e-12  Score=99.02  Aligned_cols=42  Identities=48%  Similarity=0.843  Sum_probs=38.3

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcC-CCcccEEEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-GSEADYIRI  422 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-~n~H~f~rI  422 (575)
                      |.||+|+. +|.|.||||.+|+|||||+.||... |..|+|++|
T Consensus         1 v~Cd~C~~-~i~G~ry~C~~C~d~dLC~~C~~~~~H~~H~f~~~   43 (43)
T cd02340           1 VICDGCQG-PIVGVRYKCLVCPDYDLCESCEAKGVHPEHAMLKI   43 (43)
T ss_pred             CCCCCCCC-cCcCCeEECCCCCCccchHHhhCcCCCCCCCEEeC
Confidence            58999998 9999999999999999999999985 468999875

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.24  E-value=3.5e-12  Score=97.99  Aligned_cols=44  Identities=43%  Similarity=0.936  Sum_probs=35.0

Q ss_pred             ccCceecCCCCCCCcccceEEeccCCCCccchhhhhcC--CCcccE
Q 008160          376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM--GSEADY  419 (575)
Q Consensus       376 vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~--~n~H~f  419 (575)
                      .|.++.||+|+..+|.|.||+|.+|.|||||..||..+  ...|.|
T Consensus         1 ~h~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~~~~~H~~   46 (46)
T PF00569_consen    1 IHHGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGRHSHNHKM   46 (46)
T ss_dssp             -CSSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--H-SSSSE
T ss_pred             CCCCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcCCCCCcCc
Confidence            48999999999889999999999999999999999984  346654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=99.24  E-value=4e-12  Score=99.50  Aligned_cols=42  Identities=31%  Similarity=0.615  Sum_probs=37.3

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIR  421 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~r  421 (575)
                      |.||+|++.||.|.||||++|.|||||+.||...     | ..|+|+.
T Consensus         1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~~~H~~~Hp~~e   48 (49)
T cd02334           1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMKE   48 (49)
T ss_pred             CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCeec
Confidence            5799999999999999999999999999999875     2 3688864

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=99.22  E-value=5.9e-11  Score=102.03  Aligned_cols=65  Identities=20%  Similarity=0.441  Sum_probs=59.9

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHH
Q 008160            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM   75 (575)
Q Consensus         5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~   75 (575)
                      +.||+.|+||++++.+.+      .+.+..|..+|+++|+|..+-.|++||+|||||.|||.++.+|..|.
T Consensus         1 i~~K~~y~gdi~it~~d~------~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~   65 (83)
T cd06404           1 VRVKAAYNGDIMITSIDP------SISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAF   65 (83)
T ss_pred             CeEEEEecCcEEEEEcCC------CcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHH
Confidence            469999999999999996      44577799999999999999999999999999999999999999983

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=99.22  E-value=6.6e-12  Score=97.85  Aligned_cols=43  Identities=35%  Similarity=0.848  Sum_probs=38.7

Q ss_pred             eecCCCCCCCcccceEEeccCC--CCccchhhhhcC--C-CcccEEEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKD--DYDLCSICFAAM--G-SEADYIRI  422 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~--DyDLC~~C~~~~--~-n~H~f~rI  422 (575)
                      +.||+|++.||.|.||+|.+|.  |||||+.||...  | ..|.|.+|
T Consensus         1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~~H~~~H~~~~i   48 (48)
T cd02341           1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGESHQEDHWLVKI   48 (48)
T ss_pred             CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcCCCCCCCceeeC
Confidence            4799999999999999999999  999999999986  3 47999875

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=99.20  E-value=8.1e-11  Score=100.26  Aligned_cols=78  Identities=22%  Similarity=0.463  Sum_probs=69.4

Q ss_pred             EEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEEEE
Q 008160            6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRID   85 (575)
Q Consensus         6 viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lrit   85 (575)
                      -||.||+...|||.+.-+  .  .-.+..+..+|+++++|+ +.+|+|.|.|.|||++.|..|+.|.+|+...-..|||.
T Consensus         2 eVKSkfdaEfRRFsl~r~--~--~~~f~ef~~ll~~lH~l~-~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~plLRl~   76 (80)
T cd06403           2 EVKSKFDAEFRRFSLDRN--K--PGKFEDFYKLLEHLHHIP-NVDFLIGYTDPHGDLLPINNDDNFLKALSSANPLLRIF   76 (80)
T ss_pred             ceecccCCeEEEEEeccc--c--CcCHHHHHHHHHHHhCCC-CCcEEEEEeCCCCCEecccCcHHHHHHHHcCCCceEEE
Confidence            489999999999999964  2  345677999999999999 68999999999999999999999999987777889999


Q ss_pred             EEe
Q 008160           86 VHL   88 (575)
Q Consensus        86 V~l   88 (575)
                      ||.
T Consensus        77 iqr   79 (80)
T cd06403          77 IQR   79 (80)
T ss_pred             EEc
Confidence            975

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>KOG4351 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=2.2e-11  Score=121.17  Aligned_cols=98  Identities=17%  Similarity=0.220  Sum_probs=80.8

Q ss_pred             ceEEEe--cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCeEeeEEEeECCCCCCCCC
Q 008160          463 HILRDR--GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQ  540 (575)
Q Consensus       463 KtWrvr--Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~Y~SyWRL~tp~G~~FG~  540 (575)
                      +.|||+  |.. .||.|++|.+++||.+....-.  .  ++.+.|+|+.+|.+.+.+|.++|.|.+.||+++++|.+||+
T Consensus       108 s~WRl~n~G~~-~Wp~~~~lk~~~~d~~~~~n~~--~--~~sLdP~E~~~I~~~~s~P~e~g~~~~~~q~vt~e~~~~Ge  182 (244)
T KOG4351|consen  108 SHWRLQNSGPR-VWPSDPCLKEVSPDQIEKGNIS--S--SPSLDPQEETDILAKESRPGEVGEIPGKWQNVTSENLLYGE  182 (244)
T ss_pred             eeEEEecCCce-eCCCCCcccccCCccccceeee--c--ccccCchhhhhhhhhhcCCCccccccchheeecccceeeec
Confidence            999999  999 9999999999999999754211  1  34688999999999999999999999999999999999999


Q ss_pred             eEEEEEEEecCC---cchhhhHHHHhhh
Q 008160          541 RVWVLIQVLRAL---ESIAISFEAYAFD  565 (575)
Q Consensus       541 ~lWv~I~V~~~~---~~laltqQl~~l~  565 (575)
                      .||+++.++...   .-+-+-|++.+|.
T Consensus       183 siwvI~~~~~ls~e~~~~~~~~~~~~l~  210 (244)
T KOG4351|consen  183 SIWVIPAGDLLSFELSDIPIVQELEQLP  210 (244)
T ss_pred             ceEEeecCCCcceeeccCccchhhhhcc
Confidence            999999974331   2233445555554

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=99.13  E-value=3.5e-11  Score=93.87  Aligned_cols=42  Identities=38%  Similarity=0.759  Sum_probs=37.3

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIR  421 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~r  421 (575)
                      |.||+|+..||.|.||+|.+|.|||||+.||...     | +.|+|+.
T Consensus         1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~~~H~~~H~~~~   48 (49)
T cd02338           1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQC   48 (49)
T ss_pred             CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcCCCCCCCCCEEE
Confidence            5799999889999999999999999999999985     2 3688864

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=99.07  E-value=5.1e-11  Score=92.98  Aligned_cols=42  Identities=31%  Similarity=0.588  Sum_probs=36.8

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIR  421 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~r  421 (575)
                      +.||+|...+|.|.||+|++|.|||||..||...     | ..|+|..
T Consensus         1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~~~~~H~~~H~~~~   48 (49)
T cd02345           1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLHIMYE   48 (49)
T ss_pred             CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCccc
Confidence            4799999889999999999999999999999975     2 3688864

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=98.98  E-value=1.4e-09  Score=94.29  Aligned_cols=62  Identities=29%  Similarity=0.439  Sum_probs=57.7

Q ss_pred             ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH
Q 008160            4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV   74 (575)
Q Consensus         4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a   74 (575)
                      ++.|||.|++|+|=+.++.      ++.+.+|..||+..|+|.  ..|+|+|+|| ||.|||.|++||-.|
T Consensus         2 ~ikVKv~~~~Dv~~i~v~~------~i~f~dL~~kIrdkf~~~--~~~~iKykDE-GD~iti~sq~DLd~A   63 (86)
T cd06408           2 KIRVKVHAQDDTRYIMIGP------DTGFADFEDKIRDKFGFK--RRLKIKMKDD-GDMITMGDQDDLDMA   63 (86)
T ss_pred             cEEEEEEecCcEEEEEcCC------CCCHHHHHHHHHHHhCCC--CceEEEEEcC-CCCccccCHHHHHHH
Confidence            5789999999999999994      777999999999999996  6999999999 999999999999987

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd02249 ZZ Zinc finger, ZZ type

Probab=98.95  E-value=4.9e-10  Score=85.93  Aligned_cols=42  Identities=43%  Similarity=0.937  Sum_probs=36.9

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcC--CC--cccEEEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM--GS--EADYIRI  422 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~--~n--~H~f~rI  422 (575)
                      +.||+|+. +|.|.||+|..|.|||||..||...  .+  .|+|.+|
T Consensus         1 ~~C~~C~~-~i~g~r~~C~~C~d~dLC~~Cf~~~~~~H~~~H~~~~~   46 (46)
T cd02249           1 YSCDGCLK-PIVGVRYHCLVCEDFDLCSSCYAKGKKGHPPDHSFTEI   46 (46)
T ss_pred             CCCcCCCC-CCcCCEEECCCCCCCcCHHHHHCcCcCCCCCCCCEeEC
Confidence            46999998 9999999999999999999999986  22  6888764

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=98.91  E-value=8.4e-10  Score=85.93  Aligned_cols=43  Identities=30%  Similarity=0.568  Sum_probs=37.1

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcCC------CcccEEEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG------SEADYIRI  422 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~------n~H~f~rI  422 (575)
                      ..||+|...++.|.||+|.+|.|||||..||..+.      +.|+|+.|
T Consensus         1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~~H~~~H~~~~~   49 (49)
T cd02335           1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYRVV   49 (49)
T ss_pred             CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCCCCCCCCCeEeC
Confidence            36999999888889999999999999999999851      36888754

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=98.90  E-value=8.9e-10  Score=83.94  Aligned_cols=37  Identities=49%  Similarity=0.994  Sum_probs=34.4

Q ss_pred             cCceecCCCCCCCcccceEEeccCCCCccchhhhhcCC
Q 008160          377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG  414 (575)
Q Consensus       377 H~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~  414 (575)
                      |.++.|++|+. +|.|.||+|..|.|||||..||....
T Consensus         2 ~~~~~C~~C~~-~i~g~ry~C~~C~d~dlC~~Cf~~~~   38 (44)
T smart00291        2 HHSYSCDTCGK-PIVGVRYHCLVCPDYDLCQSCFAKGS   38 (44)
T ss_pred             CCCcCCCCCCC-CCcCCEEECCCCCCccchHHHHhCcC
Confidence            67899999998 99999999999999999999998753

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=98.89  E-value=7.3e-10  Score=86.58  Aligned_cols=40  Identities=28%  Similarity=0.637  Sum_probs=34.3

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcCC------CcccEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG------SEADYI  420 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~------n~H~f~  420 (575)
                      |.||+|.. .+.|.||||+.|+|||||+.||..+.      ..|+|.
T Consensus         1 i~CdgC~~-~~~~~RykCl~C~d~DlC~~Cf~~g~~~~~H~~~Hpm~   46 (48)
T cd02343           1 ISCDGCDE-IAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEMV   46 (48)
T ss_pred             CCCCCCCC-cCCCceEECCCCCCchhHHHHHhCCccCCCCCCCCCcc
Confidence            57999997 58999999999999999999999852      357764

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=98.86  E-value=1.1e-09  Score=114.39  Aligned_cols=52  Identities=37%  Similarity=0.607  Sum_probs=46.8

Q ss_pred             cccCceecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEEEeCCc
Q 008160          375 MFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIRIDRPV  426 (575)
Q Consensus       375 ~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~rI~~P~  426 (575)
                      ..|.||.||||+.....|.||||..|.|||||..||.+.     | .+|++..|..+.
T Consensus         4 ~rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~   61 (381)
T KOG1280|consen    4 SRHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRV   61 (381)
T ss_pred             CCcCCceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeecc
Confidence            479999999999999999999999999999999999985     2 479998887665

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=98.84  E-value=1e-09  Score=83.04  Aligned_cols=41  Identities=24%  Similarity=0.629  Sum_probs=35.7

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcCCCcccEEEE
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI  422 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n~H~f~rI  422 (575)
                      +.||+|..  +.|.||+|.+|+|||||..||....+.|.+++|
T Consensus         1 y~C~~C~~--~~~~r~~C~~C~dfDLC~~C~~~~~H~H~~~~~   41 (41)
T cd02337           1 YTCNECKH--HVETRWHCTVCEDYDLCITCYNTKNHPHKMEKL   41 (41)
T ss_pred             CcCCCCCC--cCCCceECCCCcchhhHHHHhCCCCCCcccccC
Confidence            36999985  779999999999999999999987778887653

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>KOG4351 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=4.2e-08  Score=98.09  Aligned_cols=77  Identities=27%  Similarity=0.374  Sum_probs=62.1

Q ss_pred             CCCCCCcccCCCcccCCceEEEe--cCCCCCCCCCeEEEecCccCCCCCcceeeccCCCCCCCCEEEEEEEeeCCCCCCe
Q 008160          446 LGTPGPDTQHVGALGAPHILRDR--GIKPGRSRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGR  523 (575)
Q Consensus       446 ~~~fv~Dv~pDGt~v~PKtWrvr--Gs~~~WP~Gt~LvfvgGd~m~~~~~v~i~IPv~~v~PGEevdVSV~L~AP~~pG~  523 (575)
                      ++.|+.|+         |.|+|+  |++ -|+.++.|++++|+.+...-++...     ...|-+.+|+|+|+||..+  
T Consensus        43 ~aaF~Ld~---------knW~lqna~sv-~~d~~t~l~~m~~~~~~~~lsv~~~-----~~i~~e~~v~v~f~aP~~~--  105 (244)
T KOG4351|consen   43 SAAFVLDM---------KNWNLQNAGSV-YWDQDTKLKSMPGMLFVASLSVKDQ-----EVIGHEGVVSVEFIAPALE--  105 (244)
T ss_pred             ccceeeec---------cceeccccccE-EEcCCCceeeccccceeeeeeecce-----eeeccccceeeeecCCCcc--
Confidence            45566664         899999  999 9999999999999988654333222     2368899999999999998  


Q ss_pred             EeeEEEeECCCCCCCCCeEEE
Q 008160          524 YISYWRMSSPSGVKFGQRVWV  544 (575)
Q Consensus       524 Y~SyWRL~tp~G~~FG~~lWv  544 (575)
                      |.++|||.+.     |.++|+
T Consensus       106 y~s~WRl~n~-----G~~~Wp  121 (244)
T KOG4351|consen  106 YTSHWRLQNS-----GPRVWP  121 (244)
T ss_pred             ceeeEEEecC-----CceeCC
Confidence            9999999985     667776

>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]

Probab=98.35  E-value=1.2e-07  Score=106.86  Aligned_cols=54  Identities=26%  Similarity=0.506  Sum_probs=46.5

Q ss_pred             CCCcccCceecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEEEeCCc
Q 008160          372 LMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIRIDRPV  426 (575)
Q Consensus       372 ~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~rI~~P~  426 (575)
                      .....|. ..|++|++.||+|+||+|.+|+|||+|..||..+     | .+|+|..+-.|.
T Consensus       597 aE~~kH~-~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak~hk~~~pM~Ey~~~t  656 (966)
T KOG4286|consen  597 AETAKHQ-AKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAKGHKMHYPMVEYCTPT  656 (966)
T ss_pred             HHHHHhh-hhcchhhhCccceeeeeehhhcChhHHhhHhhhcccccCCCCCCCceeeeCCC
Confidence            4566775 8999999999999999999999999999999985     2 379998887665

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=98.14  E-value=1.4e-05  Score=69.60  Aligned_cols=69  Identities=29%  Similarity=0.439  Sum_probs=55.3

Q ss_pred             CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCC--CceEEEEecCCCCeEEEcCchhHHHHH----HhcCceEEEE
Q 008160           12 GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHD--SDLTLTYVDEDGDIVTLVDDDDLCDVM----RQRLKFLRID   85 (575)
Q Consensus        12 gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d--~~~~l~Y~DeDGD~Vtl~dd~DL~~a~----~q~l~~Lrit   85 (575)
                      .|.+=||++...      -++..|+..|.+=|++..+  ..|.|+|.|.|||+|.|..|+||.+|+    ....+.++|-
T Consensus         9 ~GrvhRf~~~~s------~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g~~~v~L~   82 (86)
T cd06409           9 KGRVHRFRLRPS------ESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGLKKLDLH   82 (86)
T ss_pred             CCCEEEEEecCC------CCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcCCCEEEEE
Confidence            566778988743      2588899999999988854  799999999999999999999999972    2334656666


Q ss_pred             E
Q 008160           86 V   86 (575)
Q Consensus        86 V   86 (575)
                      |
T Consensus        83 v   83 (86)
T cd06409          83 L   83 (86)
T ss_pred             E
Confidence            6

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=97.97  E-value=2.7e-05  Score=67.08  Aligned_cols=73  Identities=27%  Similarity=0.361  Sum_probs=59.1

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCC-CeEEEcCchhHHHHHHhcCceEE
Q 008160            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG-DIVTLVDDDDLCDVMRQRLKFLR   83 (575)
Q Consensus         5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDG-D~Vtl~dd~DL~~a~~q~l~~Lr   83 (575)
                      .||||.|.+   =|-|.+.    .++.+.+|+.||.+=|+|+ .+.++|.|+||+. ++|-| .|+||.+|..|-.+ =+
T Consensus         3 ~vvKV~f~~---tIaIrvp----~~~~y~~L~~ki~~kLkl~-~e~i~LsYkde~s~~~v~l-~d~dle~aws~~~~-~~   72 (80)
T cd06406           3 YVVKVHFKY---TVAIQVA----RGLSYATLLQKISSKLELP-AEHITLSYKSEASGEDVIL-SDTNMEDVWSQAKD-GC   72 (80)
T ss_pred             eEEEEEEEE---EEEEEcC----CCCCHHHHHHHHHHHhCCC-chhcEEEeccCCCCCccCc-ChHHHHHHHHhhcC-Ce
Confidence            799999998   3445542    4888999999999999999 5679999999985 78888 89999998777543 56


Q ss_pred             EEEE
Q 008160           84 IDVH   87 (575)
Q Consensus        84 itV~   87 (575)
                      ||+-
T Consensus        73 lTLw   76 (80)
T cd06406          73 LTLW   76 (80)
T ss_pred             EEEE
Confidence            6654

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]

Probab=97.52  E-value=1.8e-05  Score=83.42  Aligned_cols=42  Identities=29%  Similarity=0.679  Sum_probs=38.1

Q ss_pred             CCCcccCceecCCCCCCCcccceEEeccCCCCccchhhhhcCC
Q 008160          372 LMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG  414 (575)
Q Consensus       372 ~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~  414 (575)
                      ...+.|+ +.|+.|...+|.|+||+|..|.+|.||+.||..++
T Consensus       234 v~nv~hp-v~cs~c~srs~~gfry~cq~C~nyqlcq~cfwrG~  275 (434)
T KOG4301|consen  234 VENVFHP-VECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWRGH  275 (434)
T ss_pred             hcccCCC-ccCcceecccccchhhhHhhcCCccccchhhcccc
Confidence            4567786 99999999999999999999999999999999863

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.51  E-value=4.1e-05  Score=82.70  Aligned_cols=45  Identities=33%  Similarity=0.619  Sum_probs=39.0

Q ss_pred             ceecCCCCCCCcccce-EEeccCCCCccchhhhhcC------CCcccEEEEeC
Q 008160          379 GVRCDGCGVHPITGPR-FKSKVKDDYDLCSICFAAM------GSEADYIRIDR  424 (575)
Q Consensus       379 GV~CDgC~~~PI~G~R-YKCsvC~DyDLC~~C~~~~------~n~H~f~rI~~  424 (575)
                      .+.||+|.. .|.|.. .||++|+|||||-.||..+      .+.|+|..|.+
T Consensus        14 ky~C~~C~~-dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~   65 (438)
T KOG0457|consen   14 KYNCDYCSL-DITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDT   65 (438)
T ss_pred             CCCCccHhH-HhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecC
Confidence            478999996 588887 9999999999999999985      35899988875

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=97.14  E-value=0.0027  Score=56.53  Aligned_cols=73  Identities=29%  Similarity=0.468  Sum_probs=56.1

Q ss_pred             EEEe-CCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEe--cCCCC-eEEEcCchhHHHHHHhcC----
Q 008160            8 KVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYV--DEDGD-IVTLVDDDDLCDVMRQRL----   79 (575)
Q Consensus         8 Kv~~-gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~--DeDGD-~Vtl~dd~DL~~a~~q~l----   79 (575)
                      |++| ||+.|-..|.-      ++.+..|+.|+.+.|+...+  ++|+|.  +||-| +|+|.+|+||...+.-.-    
T Consensus        16 ~l~Y~GG~tr~i~V~r------~~s~~el~~kl~~~~~~~~~--~~lky~Lp~edld~Lisv~~DeDl~~M~~e~~~~~~   87 (97)
T cd06410          16 QLRYVGGETRIVSVDR------SISFKELVSKLSELFGAGVV--VTLKYQLPDEDLDALISVSNDEDLKNMMEEYDRLSG   87 (97)
T ss_pred             CEEEcCCceEEEEEcC------CCCHHHHHHHHHHHhCCCCc--eEEEEEcCCCCcceeEEecCcHHHHHHHHhhccccC
Confidence            4555 66788888873      46788899999999998854  999997  88888 999999999998653333    


Q ss_pred             ceEEEEEEe
Q 008160           80 KFLRIDVHL   88 (575)
Q Consensus        80 ~~LritV~l   88 (575)
                      +.-||.|++
T Consensus        88 ~~~rirvfl   96 (97)
T cd06410          88 GSARLRVFL   96 (97)
T ss_pred             CCceEEEEE
Confidence            445665554

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd02336 ZZ_RSC8 Zinc finger, ZZ type

Probab=97.13  E-value=0.00029  Score=54.64  Aligned_cols=34  Identities=29%  Similarity=0.645  Sum_probs=30.5

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcCC
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG  414 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~  414 (575)
                      +.|+.|+. .+...||+|+.+.+||||..||.++.
T Consensus         1 y~C~~Cg~-D~t~vryh~~~~~~~dLC~~CF~~G~   34 (45)
T cd02336           1 YHCFTCGN-DCTRVRYHNLKAKKYDLCPSCYQEGR   34 (45)
T ss_pred             CcccCCCC-ccCceEEEecCCCccccChHHHhCcC
Confidence            46999996 57889999999999999999999864

Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]

Probab=96.59  E-value=0.0025  Score=66.17  Aligned_cols=86  Identities=24%  Similarity=0.473  Sum_probs=70.9

Q ss_pred             cceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160            3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL   82 (575)
Q Consensus         3 ~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L   82 (575)
                      +++-||-||+-.-|||.++-..-+    .|..+..-++.+-+|+ +-+|+|-|.|--||+.-|..|+-|..|+..---.|
T Consensus        17 ~~veVKSKFdaEfRRfsl~r~~~~----~f~~F~~Lv~~~H~i~-nvdvllgY~d~hgDLLPinNDDn~~ka~~sa~PlL   91 (358)
T KOG3606|consen   17 STVEVKSKFDAEFRRFSLPRHSAS----SFDEFYSLVEHLHHIP-NVDVLLGYADTHGDLLPINNDDNLHKALSSARPLL   91 (358)
T ss_pred             ceEEeeccccchhheecccccCcc----cHHHHHHHHHHHhcCC-CceEEEEEecCCCceecccCchhHHHHhhccCchh
Confidence            357799999999999999965333    4555666666677787 78999999999999999999999999988877779


Q ss_pred             EEEEEecCCcc
Q 008160           83 RIDVHLNNDKF   93 (575)
Q Consensus        83 ritV~l~~~~~   93 (575)
                      ||-||.+.++.
T Consensus        92 R~~iQkr~ea~  102 (358)
T KOG3606|consen   92 RLLIQKREEAD  102 (358)
T ss_pred             hhhhhhhhhhh
Confidence            99998776544

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.41  E-value=0.0014  Score=68.99  Aligned_cols=47  Identities=23%  Similarity=0.342  Sum_probs=38.4

Q ss_pred             ceecCCCCCCCcccceEEeccCCCCccchhhhhcC------CCcccEEEEeCC
Q 008160          379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM------GSEADYIRIDRP  425 (575)
Q Consensus       379 GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~------~n~H~f~rI~~P  425 (575)
                      .+.||.|...-..-.+.+|..|++||||-.||.++      +..|+|..|.+-
T Consensus         5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~pyH~YRiietn   57 (432)
T COG5114           5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGYRIIETN   57 (432)
T ss_pred             eeeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCCCCeeEeecc
Confidence            36799999865667899999999999999999985      246888777643

>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis

Probab=96.22  E-value=0.015  Score=51.34  Aligned_cols=59  Identities=27%  Similarity=0.464  Sum_probs=44.5

Q ss_pred             ceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh
Q 008160           14 TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ   77 (575)
Q Consensus        14 ~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q   77 (575)
                      ++|-+.++  +|=...=.+.+|..-|++.|+-.   ++.|.|.|-+||+|.|-||+|+...+++
T Consensus        14 ~~rdi~ve--e~l~~~P~~kdLl~lmr~~f~~~---dIaLNYrD~EGDLIRllddeDv~LMV~~   72 (92)
T cd06399          14 TIRDIAVE--EDLSSTPLLKDLLELTRREFQRE---DIALNYRDAEGDLIRLLSDEDVALMVRQ   72 (92)
T ss_pred             cccceEee--cccccCccHHHHHHHHHHHhchh---heeeeeecCCCCEEEEcchhhHHHHHHH
Confidence            45555555  22222234678999999999855   8999999999999999999999876554

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.11  E-value=0.072  Score=57.50  Aligned_cols=81  Identities=25%  Similarity=0.375  Sum_probs=64.2

Q ss_pred             ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH---HHhc-C
Q 008160            4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV---MRQR-L   79 (575)
Q Consensus         4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a---~~q~-l   79 (575)
                      .+-+|+.|++++=  -.+.+    ..+.+.+|-..++..-++.-.-.|++||.|||||-+|++..-+|.+|   +.+. -
T Consensus        15 ~vrlka~y~g~i~--i~~~~----p~~~~e~~~~~vrd~c~~h~~q~~t~kwideegdp~tv~sqmeleea~r~~~~~~d   88 (593)
T KOG0695|consen   15 RVRLKAHYGGDIF--ITSVD----PATTFEELCEEVRDMCRLHQQQPLTLKWIDEEGDPCTVSSQMELEEAFRLARQCRD   88 (593)
T ss_pred             cEEEEEeecCcEE--EEecc----CcccHHHHHHHHHHHHHHhhcCCceeEeecCCCCcceechhhhHHHHHHHHHhccc
Confidence            5889999999984  44443    35667789988888889988899999999999999999999999987   3333 2


Q ss_pred             ceEEEEEEecC
Q 008160           80 KFLRIDVHLNN   90 (575)
Q Consensus        80 ~~LritV~l~~   90 (575)
                      .-|-|-|+.-.
T Consensus        89 ~el~ihvf~~~   99 (593)
T KOG0695|consen   89 EELIIHVFPST   99 (593)
T ss_pred             cceEEEEccCC
Confidence            44788887543

>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development

Probab=94.84  E-value=0.071  Score=46.62  Aligned_cols=44  Identities=23%  Similarity=0.333  Sum_probs=35.3

Q ss_pred             cccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160           28 LDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD   73 (575)
Q Consensus        28 ~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~   73 (575)
                      ..|+|+++..-|.+++-=..  .--+-|-|||||-||.-+|++|..
T Consensus        21 ~~L~F~DvL~~I~~vlp~aT--~tAFeYEDE~gDRITVRSDeEm~A   64 (91)
T cd06395          21 PQLLFRDVLDVIGQVLPEAT--TTAFEYEDEDGDRITVRSDEEMKA   64 (91)
T ss_pred             ccccHHHHHHHHHHhccccc--ccceeeccccCCeeEecchHHHHH
Confidence            46889999999999974221  223489999999999999999883

The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=91.86  E-value=0.55  Score=40.78  Aligned_cols=49  Identities=18%  Similarity=0.254  Sum_probs=40.8

Q ss_pred             ccCHHHHHHHHHHHhCCCCCCceEEEEecCCCC--eEEEcCchhHHHHHHhc
Q 008160           29 DLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGD--IVTLVDDDDLCDVMRQR   78 (575)
Q Consensus        29 dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD--~Vtl~dd~DL~~a~~q~   78 (575)
                      .+++..|+.||.+.|.+.++. .+|.|++++.+  +|-|.-++++.+|-.+-
T Consensus        16 g~~y~~L~~~ls~kL~l~~~~-~~LSY~~~~~~~~~v~l~~e~~me~aW~~v   66 (78)
T cd06411          16 GADVSSLRALLSQALPQQAQR-GQLSYRAPGEDGHWVPISGEESLQRAWQDV   66 (78)
T ss_pred             CCCHHHHHHHHHHHhcCChhh-cEEEecCCCCCccEeecCcchHHHHHHHhc
Confidence            566888999999999999764 99999998885  77777699999985554

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=91.44  E-value=0.11  Score=36.52  Aligned_cols=28  Identities=43%  Similarity=0.892  Sum_probs=13.4

Q ss_pred             ecCCCCCCCccc-ceEEeccCCCCccchhhh
Q 008160          381 RCDGCGVHPITG-PRFKSKVKDDYDLCSICF  410 (575)
Q Consensus       381 ~CDgC~~~PI~G-~RYKCsvC~DyDLC~~C~  410 (575)
                      .|+.|+. ++.| ..|.|..| ||+|...|.
T Consensus         2 ~C~~C~~-~~~~~~~Y~C~~C-df~lH~~Ca   30 (30)
T PF07649_consen    2 RCDACGK-PIDGGWFYRCSEC-DFDLHEECA   30 (30)
T ss_dssp             --TTTS-----S--EEE-TTT------HHHH
T ss_pred             cCCcCCC-cCCCCceEECccC-CCccChhcC
Confidence            6999996 6887 99999999 899988873

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=87.66  E-value=0.16  Score=50.50  Aligned_cols=63  Identities=19%  Similarity=0.373  Sum_probs=0.0

Q ss_pred             eEEEEEeCCc--eeeeeeccCCCCCcccCHHHHHHHHHHHh---CCC----------------CCCceEEEEecCCCCeE
Q 008160            5 MVIKVKYGDT--LRRFNARVDENEKLDLDIDGLRAKIKSLF---NFP----------------HDSDLTLTYVDEDGDIV   63 (575)
Q Consensus         5 ~viKv~~gd~--lRRf~~~~~~n~~~dl~~~~L~~ki~~~F---~l~----------------~d~~~~l~Y~DeDGD~V   63 (575)
                      .-+||.-.|.  .|++.+..-.      .+..|...+.+.|   .+.                ...+++|+|.|.|||+.
T Consensus       110 ~~vKV~mdG~~igRkVDL~~~~------sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~m  183 (215)
T PF02309_consen  110 SYVKVNMDGVPIGRKVDLSAYS------SYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWM  183 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeEEEecCcccceecCHHHhh------CHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEE
Confidence            5689998884  7887776421      3556998888888   443                34588999999999997


Q ss_pred             EEcCch--hHHH
Q 008160           64 TLVDDD--DLCD   73 (575)
Q Consensus        64 tl~dd~--DL~~   73 (575)
                      ..-|+-  +|..
T Consensus       184 lvGD~PW~~F~~  195 (215)
T PF02309_consen  184 LVGDVPWEEFVK  195 (215)
T ss_dssp             ------------
T ss_pred             EecCCCHHHHHH
Confidence            777665  5543

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=83.58  E-value=0.86  Score=32.24  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=23.1

Q ss_pred             ecCCCCCCCcccc-eEEeccCCCCccchhh
Q 008160          381 RCDGCGVHPITGP-RFKSKVKDDYDLCSIC  409 (575)
Q Consensus       381 ~CDgC~~~PI~G~-RYKCsvC~DyDLC~~C  409 (575)
                      .|+.|+. .+.|. .|+|..|. |+|-..|
T Consensus         2 ~C~~C~~-~~~~~~~Y~C~~c~-f~lh~~C   29 (30)
T PF03107_consen    2 WCDVCRR-KIDGFYFYHCSECC-FTLHVRC   29 (30)
T ss_pred             CCCCCCC-CcCCCEeEEeCCCC-CeEcCcc
Confidence            6999996 58999 99999986 8887766

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=83.23  E-value=1.9  Score=37.10  Aligned_cols=50  Identities=24%  Similarity=0.471  Sum_probs=30.5

Q ss_pred             CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecC
Q 008160            1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE   58 (575)
Q Consensus         1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~De   58 (575)
                      |+++++|.|+=-|-+.|+.+.-.      =++.+|..||++.|+++.+ .+.| |.|.
T Consensus         1 ~~~~milRvrS~dG~~Rie~~~~------~t~~~L~~kI~~~l~~~~~-~~~L-~~~~   50 (80)
T PF11543_consen    1 MASSMILRVRSKDGMKRIEVSPS------STLSDLKEKISEQLSIPDS-SQSL-SKDR   50 (80)
T ss_dssp             -----EEEEE-SSEEEEEEE-TT------SBHHHHHHHHHHHS---TT-T----BSSG
T ss_pred             CCccEEEEEECCCCCEEEEcCCc------ccHHHHHHHHHHHcCCCCc-ceEE-EecC
Confidence            89999999999999999999843      2588899999999999955 6655 5554

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	575
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	3e-15
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	2e-13
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	2e-07
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	2e-05
1pqs_A	77	Cell division control protein 24; alpha and beta p	7e-05
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	2e-04
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	2e-04
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	8e-04

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 98

 Score = 70.9 bits (173), Expect = 3e-15
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEA-DYIRIDRPVHYRHPRPFR 435
           H G+ C+ C   PI G  +K     +Y LC  CF +    +  +   ++          R
Sbjct: 29  HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCHLSHTFTFREKRNQKWRSLEKR 88

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 82

 Score = 65.0 bits (158), Expect = 2e-13
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 374 GMFHKGVRCDGCGVHPITGPRFKSKV---KDDYDLCSICFAAMGSEADYIRIDRPVH--Y 428
            + H G +CD CG+ PI G R+  +    +   D C  C      E D  + D  +   Y
Sbjct: 16  FVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC-LHETDIHKEDHQLEPIY 74

Query: 429 RHPRPFRG 436
           R   P  G
Sbjct: 75  RSSGPSSG 82

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVH 427
              V C  C    + G R++ +   +Y LC  CF   G           + 
Sbjct: 9   FHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR-GHAGGSHSNQHQMK 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 51/402 (12%), Positives = 107/402 (26%), Gaps = 121/402 (30%)

Query: 112 IQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHV 171
           +               K V +  +  +SK   D    +         L           V
Sbjct: 22  LSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 172 NV----VPQSQYGAESSGKAEASENLMA--HSVSNDPN------VSKDDGLR---EVLPK 216
                 V +  Y             LM+   +    P+      + + D L    +V  K
Sbjct: 80  QKFVEEVLRINYKF-----------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 217 TNLKEVFPKTSLKEVLPKTTAVDSTSKSSKDVDI-GIAARGVG--VLLSSVDLNLPPVDS 273
            N+  + P   L++ L +        + +K+V I G+   G G   +   V L+      
Sbjct: 129 YNVSRLQPYLKLRQALLEL-------RPAKNVLIDGVL--GSGKTWVALDVCLSYKVQCK 179

Query: 274 APSG----------STMSIAPPASNITAGDDRMDANENS-VHQTTSVPMSTSSV------ 316
                         S  ++      +     ++D N  S    ++++ +   S+      
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLY---QIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 317 ---DPMWPS------DVNQPRTADLGGNLSTNCPF----SGIPVANE-SAGSSRHPRRGH 362
                 + +      +V   +  +     + +C          V +  SA ++ H    H
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 363 FKRGFNRDALMGMFHKGVRCD-------GCGVHPITGPRFKSKVKDDYDLCSICFAAMGS 415
                  D +  +  K + C            +P                 SI  A    
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--------------RLSI-IAESIR 338

Query: 416 EADYIRIDRPVHYRH------------------PRPFRGLYD 439
           +     +    +++H                  P  +R ++D
Sbjct: 339 D----GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Length = 89

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 1  MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG 60
          + S + +K  Y   +   +          +  +GL  +++ + +F ++   T+ ++DE+G
Sbjct: 3  LGSQVRVKAYYRGDIMITHFE------PSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEG 56

Query: 61 DIVTLVDDDDLCDVMR 76
          D  T+    +L +  R
Sbjct: 57 DPCTVSSQLELEEAFR 72

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Length = 52

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 382 CDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG 414
           C+ C        R+   V +DYDLC  C+    
Sbjct: 9   CNEC--KHHVETRWHCTVCEDYDLCINCYNTKS 39

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A Length = 77

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 32 IDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDL 71
          I  + +KI +  N        + Y DEDGD V L  D+D 
Sbjct: 18 IMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDW 57

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Length = 98

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 2  ESTMVIKVKYGDTLR------RFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTY 55
            +++ ++ Y +          F   V++    D  I  + +KI +  N        + Y
Sbjct: 3  LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKY 62

Query: 56 VDEDGDIVTLVDDDD 70
           DEDGD V L  D+D
Sbjct: 63 QDEDGDFVVLGSDED 77

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Length = 117

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 15  LRRFNARVDENEKLDLDIDG-----LRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD 69
           +RRF+       + +          L +++  LF           Y  E GD+V    D+
Sbjct: 37  IRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDE 96

Query: 70  DLCDVMRQ 77
           +L   M  
Sbjct: 97  ELTMAMSY 104

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Length = 86

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 3  STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDI 62
          S + +K K+    RRF                    ++++   P   D+ L Y D  GD+
Sbjct: 5  SIVEVKSKFDAEFRRFALPRASVSGFQ----EFSRLLRAVHQIP-GLDVLLGYTDAHGDL 59

Query: 63 VTLVDDDDLCDVMRQRLKFLRIDVH 87
          + L +DD L   +      LR+ V 
Sbjct: 60 LPLTNDDSLHRALASGPPPLRLLVQ 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	575
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	99.59
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	99.56
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	99.55
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	99.51
2dip_A	98	Zinc finger SWIM domain-containing protein 2; ZZ d	99.47
2fc7_A	82	ZZZ3 protein; structure genomics, ZZ domain, struc	99.46
2e5r_A	63	Dystrobrevin alpha; ZZ domain, structural genomics	99.45
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	99.34
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	99.27
1tot_A	52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	99.26
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	99.08
1pqs_A	77	Cell division control protein 24; alpha and beta p	98.61
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	98.33
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	97.95
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	96.86
2npt_A	106	Dual specificity mitogen-activated protein kinase;	94.43
2cu1_A	103	Mitogen-activated protein kinase kinase kinase 2;	89.84
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	86.71
2jrh_A	94	Mitogen-activated protein kinase kinase kinase 3;	83.9
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	82.62

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=99.59  E-value=4e-15  Score=127.30  Aligned_cols=82  Identities=24%  Similarity=0.408  Sum_probs=70.5

Q ss_pred             cceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceE
Q 008160            3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL   82 (575)
Q Consensus         3 ~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~L   82 (575)
                      +.+.||+||+.+.|||.+.-+  +  ...+..|..+|+++|+|. +.+|+|+|+|+|||+|+|.+|++|.+|+....-+|
T Consensus         5 ~~l~vKskf~aE~RRFs~d~~--~--~~~fe~f~~lv~~lh~L~-~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~plL   79 (86)
T 1wmh_B            5 SIVEVKSKFDAEFRRFALPRA--S--VSGFQEFSRLLRAVHQIP-GLDVLLGYTDAHGDLLPLTNDDSLHRALASGPPPL   79 (86)
T ss_dssp             CEEEEEEEETTEEEEEEEEGG--G--CCCHHHHHHHHHHHTTCT-TCCCEEEEECTTSCEEECCSHHHHHHHTTSSSSCE
T ss_pred             CEEEEEeecCCeeeEeEccCC--C--CCCHHHHHHHHHHHcCCC-CCCEEEEEECCCCCEeeecCHHHHHHHHHhCCCcE
Confidence            568999999999999999843  2  346777999999999994 88999999999999999999999999865443489


Q ss_pred             EEEEEec
Q 008160           83 RIDVHLN   89 (575)
Q Consensus        83 ritV~l~   89 (575)
                      ||.|+.+
T Consensus        80 Rl~Iqrk   86 (86)
T 1wmh_B           80 RLLVQKR   86 (86)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9999753

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=99.56  E-value=1.4e-14  Score=124.70  Aligned_cols=80  Identities=21%  Similarity=0.376  Sum_probs=69.4

Q ss_pred             cceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHH----hc
Q 008160            3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR----QR   78 (575)
Q Consensus         3 ~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~----q~   78 (575)
                      +.+.|||.|+||+|||.++.      ++++..|.+||+++|++..+..|+|||+|||||.|||.+|.||..|+.    .+
T Consensus         5 ~~vkvK~~~~gdi~~~~v~~------~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~   78 (89)
T 1vd2_A            5 SQVRVKAYYRGDIMITHFEP------SISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNK   78 (89)
T ss_dssp             SCEEEEEESSSCEEEEEECT------TCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTS
T ss_pred             CeEEEEEEeCCeEEEEECCC------CCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccC
Confidence            35899999999999999984      677888999999999999999999999999999999999999998843    12


Q ss_pred             CceEEEEEEe
Q 008160           79 LKFLRIDVHL   88 (575)
Q Consensus        79 l~~LritV~l   88 (575)
                      -..|.|-|+.
T Consensus        79 ~~~l~ihvf~   88 (89)
T 1vd2_A           79 DSELLIHVFP   88 (89)
T ss_dssp             CCCEEEEEEE
T ss_pred             CCCEEEEEcc
Confidence            3347787764

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=99.55  E-value=2.2e-14  Score=126.26  Aligned_cols=84  Identities=20%  Similarity=0.370  Sum_probs=68.0

Q ss_pred             ceEEEEEe------CCceeeeeeccCCCCCcc-----cCHHHHHHHHHHHh-CCCCCCceEEEEecCCCCeEEEcCchhH
Q 008160            4 TMVIKVKY------GDTLRRFNARVDENEKLD-----LDIDGLRAKIKSLF-NFPHDSDLTLTYVDEDGDIVTLVDDDDL   71 (575)
Q Consensus         4 ~~viKv~~------gd~lRRf~~~~~~n~~~d-----l~~~~L~~ki~~~F-~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL   71 (575)
                      .++|||.|      ++++|||.++++.+-..+     .++..|++||+++| +|. ..+|+|+|+|||||+|||.+|+||
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~-~~~f~l~Y~DedGDlItiSsDeEL   83 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR-PGGFQAHYRAERGDLVAFSSDEEL   83 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-SSCEEEEEECTTCCEEEECSHHHH
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC-CCcEEEEEECCCCCEEEecCHHHH
Confidence            58999999      579999999975211111     46888999999999 566 678999999999999999999999


Q ss_pred             HHHHHh-cCceEEEEEEe
Q 008160           72 CDVMRQ-RLKFLRIDVHL   88 (575)
Q Consensus        72 ~~a~~q-~l~~LritV~l   88 (575)
                      ..|+.. +...|||.|+-
T Consensus        84 ~~Al~~~~~~~lRlyVke  101 (102)
T 2kkc_A           84 TMAMSYVKDDIFRIYIKE  101 (102)
T ss_dssp             HHHHHHCCSSEEEEEEEE
T ss_pred             HHHHHhcCCCeEEEEEEc
Confidence            998544 34589998863

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=99.51  E-value=6.1e-14  Score=126.10  Aligned_cols=86  Identities=22%  Similarity=0.343  Sum_probs=68.9

Q ss_pred             CCcceEEEEEeC------CceeeeeeccCCCCCc-----ccCHHHHHHHHHHHh-CCCCCCceEEEEecCCCCeEEEcCc
Q 008160            1 MESTMVIKVKYG------DTLRRFNARVDENEKL-----DLDIDGLRAKIKSLF-NFPHDSDLTLTYVDEDGDIVTLVDD   68 (575)
Q Consensus         1 ~~~~~viKv~~g------d~lRRf~~~~~~n~~~-----dl~~~~L~~ki~~~F-~l~~d~~~~l~Y~DeDGD~Vtl~dd   68 (575)
                      |-+ ++|||.|+      +++|||.++++.+-.+     ..++..|++||+++| +|. ..+|+|+|+|||||+|||.+|
T Consensus        18 ~~~-l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-~~~f~l~YkDEdGDlItISsD   95 (117)
T 2ktr_A           18 MGS-LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-PGGFQAHYRAERGDLVAFSSD   95 (117)
T ss_dssp             --C-EEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-SSCEEEEEECTTCCEEEECSH
T ss_pred             ccc-EEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-CCcEEEEEECCCCCEEEecCH
Confidence            444 99999996      7999999997532112     247888999999999 677 568999999999999999999


Q ss_pred             hhHHHHHHh-cCceEEEEEEe
Q 008160           69 DDLCDVMRQ-RLKFLRIDVHL   88 (575)
Q Consensus        69 ~DL~~a~~q-~l~~LritV~l   88 (575)
                      ++|..|+.. +...|||.|+-
T Consensus        96 eEL~~Al~~~~~~~lRlyVke  116 (117)
T 2ktr_A           96 EELTMAMSYVKDDIFRIYIKE  116 (117)
T ss_dssp             HHHHHHHHHCCSSEEEEEEEE
T ss_pred             HHHHHHHHhcCCCeEEEEEEe
Confidence            999998644 33578998863

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=99.47  E-value=2e-14  Score=125.64  Aligned_cols=54  Identities=24%  Similarity=0.486  Sum_probs=49.8

Q ss_pred             CCcccCceecCCCCCCCcccceEEeccCCCCccchhhhhcC-CCcccEEEEeCCc
Q 008160          373 MGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-GSEADYIRIDRPV  426 (575)
Q Consensus       373 ~~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-~n~H~f~rI~~P~  426 (575)
                      ..++|.|+.||+|++.||.|.||||.+|+|||||+.||... |..|+|++|.+|.
T Consensus        25 ~~~~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~~~   79 (98)
T 2dip_A           25 RLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCHLSHTFTFREKRN   79 (98)
T ss_dssp             CCSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSGGGSCEEECCSSS
T ss_pred             cccccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCCCCCCCeeEecCCC
Confidence            57899999999999999999999999999999999999986 4589999998875

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6

Probab=99.46  E-value=6.6e-14  Score=118.64  Aligned_cols=57  Identities=26%  Similarity=0.536  Sum_probs=51.4

Q ss_pred             CcCCCcccCceecCCCCCCCcccceEEeccCCC---CccchhhhhcC-----C-CcccEEEEeCCc
Q 008160          370 DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDD---YDLCSICFAAM-----G-SEADYIRIDRPV  426 (575)
Q Consensus       370 ~a~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~D---yDLC~~C~~~~-----~-n~H~f~rI~~P~  426 (575)
                      ++...++|.++.||+|++.||+|.||||.+|+|   ||||+.||...     | ..|+|+.|.+|.
T Consensus        12 ~~~~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~   77 (82)
T 2fc7_A           12 AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSS   77 (82)
T ss_dssp             SSTTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCC
T ss_pred             ccccCCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCC
Confidence            566789999999999999999999999999999   99999999862     3 479999999886

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=5.1e-14  Score=113.86  Aligned_cols=54  Identities=24%  Similarity=0.536  Sum_probs=47.4

Q ss_pred             CcCCCcccCceecCCCCCCCcccceEEeccCCCCccchhhhhcC-----C-CcccEEEEeC
Q 008160          370 DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM-----G-SEADYIRIDR  424 (575)
Q Consensus       370 ~a~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~-----~-n~H~f~rI~~  424 (575)
                      .+...+.|. +.||+|+..||.|.||||++|+|||||+.||...     | ..|+|++|.+
T Consensus         3 s~~~~v~H~-~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t   62 (63)
T 2e5r_A            3 SGSSGVFHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS   62 (63)
T ss_dssp             CCSSSCCSC-SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred             CCcCCceeC-CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEeC
Confidence            456788888 9999999999999999999999999999999985     2 4799998853

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=99.34  E-value=7e-12  Score=107.32  Aligned_cols=81  Identities=19%  Similarity=0.400  Sum_probs=69.9

Q ss_pred             CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHH---Hh
Q 008160            1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM---RQ   77 (575)
Q Consensus         1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~---~q   77 (575)
                      ||..+++||.|.|+.|||-+.-.  +  +.++.+|..|+...|+|.   +|+|||.|||||.|+|.++.++.+|+   ..
T Consensus         3 ~~~~v~lkV~f~ge~~rf~vs~~--~--~~tweel~~mvk~~f~L~---~~~ikY~DEenD~v~i~Sq~E~eEAlkva~k   75 (87)
T 2bkf_A            3 MEPQVTLNVTFKNEIQSFLVSDP--E--NTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK   75 (87)
T ss_dssp             CCCCEEEEEEETTEEEEEEESCG--G--GCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEECSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEEEcCCeeEEEeccC--C--CCCHHHHHHHHHHHcCCC---ceEEEEEcCCCCEEEEecHHHHHHHHHHhcc
Confidence            99999999999999999999532  1  556788999999999996   88999999999999999999999983   23


Q ss_pred             cCceEEEEEEe
Q 008160           78 RLKFLRIDVHL   88 (575)
Q Consensus        78 ~l~~LritV~l   88 (575)
                      ..+.|++.|+-
T Consensus        76 ~~n~L~m~v~~   86 (87)
T 2bkf_A           76 QGNQLQMQVHE   86 (87)
T ss_dssp             TTTEEEEEEEE
T ss_pred             CCCEEEEEEec
Confidence            36779999853

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=99.27  E-value=9.5e-12  Score=108.93  Aligned_cols=80  Identities=19%  Similarity=0.417  Sum_probs=69.2

Q ss_pred             CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHH---Hh
Q 008160            1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM---RQ   77 (575)
Q Consensus         1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~---~q   77 (575)
                      ||..+++||.|.+++|||-|.-.  +  +.++.+|..|+...|+|.   +|+|||.|||||.|+|..+.++.+|+   ..
T Consensus        11 m~~~v~lkV~f~ge~~rF~Vs~~--~--~~tweel~~mvk~~f~L~---~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k   83 (101)
T 1wj6_A           11 MEPQVTLNVTFKNEIQSFLVSDP--E--NTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK   83 (101)
T ss_dssp             SCSCEEEEEEETTEEEEEEESCT--T--TSCHHHHHHHHHHHHCCS---SBCCEEECTTSCEECCCSHHHHHHHHHHHHH
T ss_pred             cCccEEEEEEEcCCeeEEEecCC--C--CCCHHHHHHHHHHHcCCC---ceEEEEecCCCCEEEEecHHHHHHHHHHhcc
Confidence            89999999999999999999632  1  456778999999999996   78999999999999999999999983   22


Q ss_pred             cCceEEEEEE
Q 008160           78 RLKFLRIDVH   87 (575)
Q Consensus        78 ~l~~LritV~   87 (575)
                      ..+.|++.|+
T Consensus        84 ~~n~L~m~V~   93 (101)
T 1wj6_A           84 QGNQLQMQVH   93 (101)
T ss_dssp             HTSEEEEECC
T ss_pred             CCCEEEEEEe
Confidence            2577999984

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6

Probab=99.26  E-value=2e-12  Score=100.96  Aligned_cols=49  Identities=22%  Similarity=0.515  Sum_probs=44.0

Q ss_pred             ccCceecCCCCCCCcccceEEeccCCCCccchhhhhcCCCcccEEEEeCCc
Q 008160          376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPV  426 (575)
Q Consensus       376 vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n~H~f~rI~~P~  426 (575)
                      -|.++.||+|... | |.||||++|+|||||..||....+.|+|.+|..|+
T Consensus         3 ~~~~~~Cd~C~~~-i-g~R~~C~~C~dyDLC~~C~~~~~H~H~m~~~~~~l   51 (52)
T 1tot_A            3 DRFVYTCNECKHH-V-ETRWHCTVCEDYDLCINCYNTKSHTHKMVKWGLGL   51 (52)
T ss_dssp             CSSCEEETTTTEE-E-SSEEEESSSSSCEECHHHHHHHCCCSSEEEECSSC
T ss_pred             CcCEEECCCCCCC-C-cceEEcCCCCCchhHHHHHhCCCCCCceEEecCCC
Confidence            4567999999975 5 99999999999999999999987799999998775

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=99.08  E-value=3.1e-10  Score=99.23  Aligned_cols=77  Identities=26%  Similarity=0.436  Sum_probs=62.1

Q ss_pred             ceEEEEEeC--------CceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCc----eEEEEecCCCCeEEEcCchhH
Q 008160            4 TMVIKVKYG--------DTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSD----LTLTYVDEDGDIVTLVDDDDL   71 (575)
Q Consensus         4 ~~viKv~~g--------d~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~----~~l~Y~DeDGD~Vtl~dd~DL   71 (575)
                      .+-|||.|+        +|+|-+.++.      +.+|.+|.+||++-|++..+++    +.|||+|||||+|||.+|+||
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~------~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl   78 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEK------VWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDW   78 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECT------TCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHH
T ss_pred             cEEEEEEecCcccccccCcEEEEEecC------CCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHH
Confidence            478999999        6777777773      6778899999999999876666    689999999999999999999


Q ss_pred             HHHH---Hhc-CceEEEEE
Q 008160           72 CDVM---RQR-LKFLRIDV   86 (575)
Q Consensus        72 ~~a~---~q~-l~~LritV   86 (575)
                      .-|+   +.. .+.|.|-|
T Consensus        79 ~~A~e~~~e~~~~~l~Iwv   97 (98)
T 1q1o_A           79 NVAKEMLAENNEKFLNIRL   97 (98)
T ss_dssp             HHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHHhhhcCeEEEEE
Confidence            9763   222 46566654

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=98.61  E-value=4.6e-08  Score=82.11  Aligned_cols=46  Identities=33%  Similarity=0.423  Sum_probs=40.3

Q ss_pred             ccCHHHHHHHHHHHhCCCCC----CceEEEEecCCCCeEEEcCchhHHHH
Q 008160           29 DLDIDGLRAKIKSLFNFPHD----SDLTLTYVDEDGDIVTLVDDDDLCDV   74 (575)
Q Consensus        29 dl~~~~L~~ki~~~F~l~~d----~~~~l~Y~DeDGD~Vtl~dd~DL~~a   74 (575)
                      ++.+..|.+||++-|++.+.    ..+.|||+|||||+|||.+|+||.-|
T Consensus        11 ~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A   60 (77)
T 1pqs_A           11 VWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVA   60 (77)
T ss_dssp             CCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHH
Confidence            66688899999999996533    45899999999999999999999976

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=98.33  E-value=8.1e-07  Score=78.17  Aligned_cols=59  Identities=25%  Similarity=0.459  Sum_probs=45.9

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh
Q 008160            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ   77 (575)
Q Consensus         5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q   77 (575)
                      +|-.|..+++++.-+           .+.+|..+||+.|+   .+++.|+|.|.|||+|+|.||+|+..++++
T Consensus        19 ~irdI~veedl~~~P-----------~ykdLl~lmr~~F~---~~DIaLNYrD~eGDLIrilddeDv~lmi~~   77 (107)
T 1oey_J           19 TIKDIAVEEDLSSTP-----------LLKDLLELTRREFQ---REDIALNYRDAEGDLVRLLSDEDVALMVRQ   77 (107)
T ss_dssp             EEEEEEECSCTTCCC-----------CHHHHHHHHHHHHC---CSSEEEEEECTTSCEEECCSHHHHHHHHHH
T ss_pred             eeeeEEEccccccCC-----------CHHHHHHHHHHHhc---ccceeeeeecCCCCEEEEcchHHHHHHHHH
Confidence            444555555554433           25669999999999   679999999999999999999999965443

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=97.95  E-value=3e-05  Score=66.00  Aligned_cols=75  Identities=15%  Similarity=0.251  Sum_probs=58.4

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecC-CCCeEEEcCchhHHHHHHhcCceEE
Q 008160            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE-DGDIVTLVDDDDLCDVMRQRLKFLR   83 (575)
Q Consensus         5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~De-DGD~Vtl~dd~DL~~a~~q~l~~Lr   83 (575)
                      ++|||.|. ++-=+.++      .++++.+|+.||++-|+++ ...++|.|+|+ .|.+| |..|+||.+|..+--+- |
T Consensus         6 ~~VKV~~~-~tvairvp------~~~~y~~L~~~l~~kL~l~-~~~~~LsYk~~~s~~~v-i~~d~dl~~aw~~~~n~-~   75 (83)
T 1oey_A            6 YTLKVHYK-YTVVMKTQ------PGLPYSQVRDMVSKKLELR-LEHTKLSYRPRDSNELV-PLSEDSMKDAWGQVKNY-C   75 (83)
T ss_dssp             EEEEEESS-SEEEEEEC------TTCCHHHHHHHHHHHTTCC-GGGCCEEECCTTCSSCE-ECCTTTHHHHHTTCBTT-E
T ss_pred             EEEEEEEE-EEEEEECC------CCCCHHHHHHHHHHHhCCC-cceeEEEeeCCCCCCee-ccChHHHHHHHHhccCC-c
Confidence            79999999 45455555      3788999999999999999 56899999995 67778 99999999886663232 4


Q ss_pred             EEEEec
Q 008160           84 IDVHLN   89 (575)
Q Consensus        84 itV~l~   89 (575)
                      ||+...
T Consensus        76 LtL~C~   81 (83)
T 1oey_A           76 LTLWCE   81 (83)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            555443

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=96.86  E-value=0.0033  Score=53.75  Aligned_cols=68  Identities=24%  Similarity=0.322  Sum_probs=54.3

Q ss_pred             cceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecC-CCCeEEEcCchhHHHHHHhcCc
Q 008160            3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE-DGDIVTLVDDDDLCDVMRQRLK   80 (575)
Q Consensus         3 ~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~De-DGD~Vtl~dd~DL~~a~~q~l~   80 (575)
                      +++=||+-|.||+==+.++      .|+++.+|..||..=+++  ++.+.+.|+|| .|+  -|.+|+||..|+..+.|
T Consensus        11 ~~~KVK~yy~DDIiAIrvP------~di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~--~i~sD~dl~~aiqrn~K   79 (85)
T 1ip9_A           11 KTTKIKFYYKDDIFALMLK------GDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGE--EIKTDSQVSNIIQAKLK   79 (85)
T ss_dssp             CCEEEEECBTTCCEEEEEC------SCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCS--CCCSHHHHHHHHHTTCC
T ss_pred             CceEEEEEecCcEEEEECC------CCCCHHHHHHHHHHHhcc--cceEEEEecCCCCCC--cccCHHHHHHHHHhcCe
Confidence            3467999999998666666      378899999999999999  35555688887 777  89999999977666555

>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A

Probab=94.43  E-value=0.1  Score=45.58  Aligned_cols=43  Identities=26%  Similarity=0.415  Sum_probs=35.3

Q ss_pred             cccCHHHHHHHHHHHhCCCCCCceE-EEEecCCCCeEEEcCchhHHH
Q 008160           28 LDLDIDGLRAKIKSLFNFPHDSDLT-LTYVDEDGDIVTLVDDDDLCD   73 (575)
Q Consensus        28 ~dl~~~~L~~ki~~~F~l~~d~~~~-l~Y~DeDGD~Vtl~dd~DL~~   73 (575)
                      ..|+|++|..-|.+++-   ++..+ +-|-|||||-||.-+|++|-.
T Consensus        35 ~~L~FrDvL~~I~~vmP---~aT~TAFeYEDE~gDRITVRSDeE~kA   78 (106)
T 2npt_A           35 PQLLFRDVLDVIGQVLP---EATTTAFEYEDEDGDRITVRSDEEMKA   78 (106)
T ss_dssp             -CCCHHHHHHHHHHHST---TSCCSEEEEECTTSCEEEECSHHHHHH
T ss_pred             ccccHHHHHHHHHHhCc---cceeeeeeeccccCCeeEEcchHHHHH
Confidence            57899999999999973   33333 499999999999999998873

>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=89.84  E-value=3.7  Score=36.16  Aligned_cols=73  Identities=22%  Similarity=0.328  Sum_probs=57.7

Q ss_pred             ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHH-----hc
Q 008160            4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR-----QR   78 (575)
Q Consensus         4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~-----q~   78 (575)
                      ++-||..|++--|=+.++-      -+.|.+|..|+.++|.-    .+.|.|.|- -=+|-|...+||-.|+.     ..
T Consensus         8 dvRiKfE~~GEkRIi~f~R------Pv~f~eL~~Kv~~~fGq----~ldL~y~n~-EllIpl~sQeDLDkaIellDrss~   76 (103)
T 2cu1_A            8 DVRVKFEHRGEKRILQFPR------PVKLEDLRSKAKIAFGQ----SMDLHYTNN-ELVIPLTTQDDLDKAVELLDRSIH   76 (103)
T ss_dssp             EEEEEEEETTEEEEEEEES------SCCHHHHHHHHHHHHSS----CEEEEECSS-SSCEECCSHHHHHHHHHHHHHCSS
T ss_pred             cEEEEEEecCeEEEEeccC------CccHHHHHHHHHHHhCC----eeeEEEecc-eEEEeccCHHHHHHHHHHHccCCc
Confidence            5789999999999888883      45677899999999976    477899964 56889999999988732     23


Q ss_pred             CceEEEEEE
Q 008160           79 LKFLRIDVH   87 (575)
Q Consensus        79 l~~LritV~   87 (575)
                      .+.|||-+.
T Consensus        77 ~kSLrIlL~   85 (103)
T 2cu1_A           77 MKSLKILLV   85 (103)
T ss_dssp             CCSEEEEEE
T ss_pred             ccceEEEEe
Confidence            477999553

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=86.71  E-value=0.32  Score=41.33  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=27.6

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhc
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA  412 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~  412 (575)
                      +.||.|+.. +.|.+|+|..| +|+|-..|...
T Consensus        48 ~~C~~C~~~-~~~~~Y~C~~C-~f~lH~~Ca~~   78 (89)
T 1v5n_A           48 YTCDKCEEE-GTIWSYHCDEC-DFDLHAKCALN   78 (89)
T ss_dssp             CCCTTTSCC-CCSCEEECTTT-CCCCCHHHHHC
T ss_pred             eEeCCCCCc-CCCcEEEcCCC-CCeEcHHhcCC
Confidence            689999975 89999999999 79999999765

>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A

Probab=83.90  E-value=19  Score=31.21  Aligned_cols=80  Identities=24%  Similarity=0.359  Sum_probs=60.9

Q ss_pred             CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHH----
Q 008160            1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR----   76 (575)
Q Consensus         1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~----   76 (575)
                      |..++-||.-|.+--|=+.+. |     -+.+.+|..|+..+|+-.    +-|-|. ..-=+|-|...+||-.|+.    
T Consensus         1 ~q~dvRIKfE~~gEKRIi~f~-R-----Pvkf~dl~qkv~~afGq~----ldl~y~-nnEL~iPL~~Q~DLDkAvelLDr   69 (94)
T 2jrh_A            1 MQSDVRIKFEHNGERRIIAFS-R-----PVKYEDVEHKVTTVFGQP----LDLHYM-NNELSILLKNQDDLDKAIDILDR   69 (94)
T ss_dssp             -CCCEEEEEEETTEEEEEEEC-S-----SCCHHHHHHHHHHHHCSS----EEEEEE-CSSCEEECCSHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEecCceEEEecC-C-----CccHHHHHHHHHHHhCCe----eeeEEe-cceeEEeccCHHHHHHHHHHhcc
Confidence            677899999999998888777 2     345777999999999765    557777 4567888999999988842    


Q ss_pred             -hcCceEEEEEEecCC
Q 008160           77 -QRLKFLRIDVHLNND   91 (575)
Q Consensus        77 -q~l~~LritV~l~~~   91 (575)
                       ...|.|||-+.....
T Consensus        70 s~~mkSLRIlL~~~~~   85 (94)
T 2jrh_A           70 SSSMKSLRILLLSQDR   85 (94)
T ss_dssp             STTTTEEEEEEEECSS
T ss_pred             CccccceEEEEEcCCc
Confidence             235889998865443

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=82.62  E-value=2.7  Score=36.99  Aligned_cols=75  Identities=12%  Similarity=0.166  Sum_probs=51.8

Q ss_pred             CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeE-EE-cCchhHHHHHHhc
Q 008160            1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV-TL-VDDDDLCDVMRQR   78 (575)
Q Consensus         1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~V-tl-~dd~DL~~a~~q~   78 (575)
                      |.+.+.|+|+....-+.+.+.+.    .+.....|..||++.+++++ +...|.|.+.+|-.+ .| .|+.-|.+.=.+.
T Consensus         3 m~~~v~l~V~~~~~~~~~e~~v~----~~~TV~~lK~ki~~~~Gip~-~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~   77 (122)
T 1t0y_A            3 MTEVYDLEITTNATDFPMEKKYP----AGMSLNDLKKKLELVVGTTV-DSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD   77 (122)
T ss_dssp             CCCEEEEEEEESSCCSCEEEEEE----TTSBHHHHHHHHHHHHCCCT-TTEEEEEECSSSSEEEECCCCSSBTTTTTCCS
T ss_pred             CCCEEEEEEEECCCCccEEEEeC----CCCcHHHHHHHHHHHhCCCH-HHeEEEEecCCCccccccCCCcCCHHHCCCCC
Confidence            77778888888655444666553    35667889999999999996 578889988778766 34 4444455432344


Q ss_pred             Cc
Q 008160           79 LK   80 (575)
Q Consensus        79 l~   80 (575)
                      ..
T Consensus        78 g~   79 (122)
T 1t0y_A           78 GY   79 (122)
T ss_dssp             SE
T ss_pred             CC
Confidence            33

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	575
d2dipa1	85	g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing p	6e-14
d2fc7a1	69	g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing p	8e-11
d1ip9a_	85	d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker'	1e-10
d2bkfa1	85	d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NB	1e-08
d1tota1	52	g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse	2e-06
d1wmha_	83	d.15.2.2 (A:) Protein kinase C, iota type {Human (	0.001
d1wmhb_	82	d.15.2.2 (B:) Partitioning defective-6 homolog alp	0.003
d1pqsa_	77	d.15.2.2 (A:) Cell division control protein 24, CD	0.004

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 6e-14
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 12/67 (17%)

Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRG 436
           H G+ C+ C   PI G  +K     +Y LC  CF +              H  H   FR 
Sbjct: 22  HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS------------YCHLSHTFTFRE 69

Query: 437 LYDHRQN 443
             + +  
Sbjct: 70  KRNQKWR 76

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 8e-11
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 375 MFHKGVRCDGCGVHPITGPRFKSKV---KDDYDLCSICFAA 412
           + H G +CD CG+ PI G R+  +    +   D C  C   
Sbjct: 10  VQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC 50

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 3  STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDI 62
           T  IK  Y D +      +      D     LR+KI    +     +  L     DG  
Sbjct: 11 KTTKIKFYYKDDIFAL--MLK----GDTTYKELRSKIAPRIDTD---NFKLQTKLFDGSG 61

Query: 63 VTLVDDDDLCDVMRQRLKFLRIDV 86
            +  D  + ++++ +LK    D+
Sbjct: 62 EEIKTDSQVSNIIQAKLKISVHDI 85

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 1  MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG 60
          ME  + + V + + ++ F     EN         + A +K  F+    + + + Y+DE+ 
Sbjct: 1  MEPQVTLNVTFKNEIQSFLVSDPENTT----WADIEAMVKVSFDL---NTIQIKYLDEEN 53

Query: 61 DIVTLVDDDDLC---DVMRQRLKFLRIDVH 87
          + V++    +      +  ++   L++ VH
Sbjct: 54 EEVSINSQGEYEEALKMAVKQGNQLQMQVH 83

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 382 CDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRID 423
           C+ C  H     R+   V +DYDLC  C+         ++  
Sbjct: 9   CNECKHHV--ETRWHCTVCEDYDLCINCYNTKSHTHKMVKWG 48

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 11/44 (25%), Positives = 26/44 (59%)

Query: 33 DGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR 76
          +GL  +++ + +F ++   T+ ++DE+GD  T+    +L +  R
Sbjct: 24 EGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFR 67

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 3  STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDI 62
          S + +K K+    RRF                    ++++   P   D+ L Y D  GD+
Sbjct: 1  SIVEVKSKFDAEFRRFALPRASVSGFQ----EFSRLLRAVHQIPG-LDVLLGYTDAHGDL 55

Query: 63 VTLVDDDDLCDVMRQRLKFLRIDVH 87
          + L +DD L   +      LR+ V 
Sbjct: 56 LPLTNDDSLHRALASGPPPLRLLVQ 80

>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Cell division control protein 24, CDC24, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.5 bits (79), Expect = 0.004
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 32 IDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDD 70
          I  + +KI +  N        + Y DEDGD V L  D+D
Sbjct: 18 IMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDED 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	575
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	99.48
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	99.43
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	99.41
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	99.34
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	99.09
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	98.28
d1wmha_	83	Protein kinase C, iota type {Human (Homo sapiens)	98.06
d1pqsa_	77	Cell division control protein 24, CDC24, C-termina	97.74
d2npta1	105	Mitogen activated protein kinase kinase 5, Map2k5	96.72
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	96.51
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	93.75
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	92.7
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	90.06
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	87.86
d2nptb1	82	Mitogen-activated protein kinase kinase kinase 2,	81.06

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=9e-14  Score=116.70  Aligned_cols=80  Identities=18%  Similarity=0.376  Sum_probs=70.0

Q ss_pred             CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHH---HHh
Q 008160            1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV---MRQ   77 (575)
Q Consensus         1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a---~~q   77 (575)
                      ||-+++|||.|++++|||.++..    -.-.+..|..+|+..|+|.   +|.|||.|+|+|+|+|..+.||.++   +..
T Consensus         1 mep~vtvKvtf~~dt~RF~ls~~----~~~~~~~L~~~i~~rf~l~---~~~lkY~Ddd~e~v~l~~d~dl~E~~~~a~~   73 (85)
T d2bkfa1           1 MEPQVTLNVTFKNEIQSFLVSDP----ENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK   73 (85)
T ss_dssp             CCCCEEEEEEETTEEEEEEESCG----GGCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEECSHHHHHHHHHHHHH
T ss_pred             CCccEEEEEEECCceEEEEecCC----CCCcHHHHHHHHHHhcCcc---cceEEEEcCCCCEEEEecHHHHHHHHHHHhc
Confidence            99999999999999999999742    2456889999999999995   5999999999999999999999997   333


Q ss_pred             cCceEEEEEE
Q 008160           78 RLKFLRIDVH   87 (575)
Q Consensus        78 ~l~~LritV~   87 (575)
                      ..+.|||.|.
T Consensus        74 ~~~~irl~v~   83 (85)
T d2bkfa1          74 QGNQLQMQVH   83 (85)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            4688999884

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=9.2e-14  Score=116.06  Aligned_cols=68  Identities=24%  Similarity=0.303  Sum_probs=61.6

Q ss_pred             ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCc
Q 008160            4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK   80 (575)
Q Consensus         4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~   80 (575)
                      ++.|||.|++|+|||.++.      ++.+.+|.++|++-|++.   +|.|||.|||||+|||.+|+||..|+.|.+|
T Consensus        12 ~ikVKv~~~~D~~~~~l~~------~it~~dL~~kI~~rf~~~---~~~lkY~Dedgd~v~i~sD~Dl~~ai~~~~k   79 (85)
T d1ip9a_          12 TTKIKFYYKDDIFALMLKG------DTTYKELRSKIAPRIDTD---NFKLQTKLFDGSGEEIKTDSQVSNIIQAKLK   79 (85)
T ss_dssp             CEEEEECBTTCCEEEEECS------CCCHHHHHHHHHHHHTSS---CEEEEECCSSSCCSCCCSHHHHHHHHHTTCC
T ss_pred             CEEEEEEECCcEEEEEeCC------CCCHHHHHHHHHHHhCCC---ceEEEEEcCCCCEEEEeCHHHHHHHHHhcCc
Confidence            4889999999999999983      677899999999999874   6999999999999999999999998887755

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.6e-14  Score=118.44  Aligned_cols=62  Identities=24%  Similarity=0.456  Sum_probs=50.9

Q ss_pred             CcCCCcccCceecCCCCCCCcccceEEeccCCCCccchhhhhcCC-CcccEEE-EeCCcccCCC
Q 008160          370 DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG-SEADYIR-IDRPVHYRHP  431 (575)
Q Consensus       370 ~a~~~~vH~GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~-n~H~f~r-I~~P~~~r~p  431 (575)
                      +......|.|+.||+|+..||.|.||+|..|+|||||+.||.... ..|+|.. .+++..|+.+
T Consensus        15 ~~~~~~~H~~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~~~~~h~~H~f~~~~~~~~~w~~~   78 (85)
T d2dipa1          15 EKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCHLSHTFTFREKRNQKWRSL   78 (85)
T ss_dssp             CSSCCSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSGGGSCEEECCSSSCCCEEC
T ss_pred             cccccCccCCeECCCCCCCCcCcceEEcCCCCCccchHHHHCcCCCCCCCcceecCCCCCcccc
Confidence            345667999999999999999999999999999999999998764 4799974 4455555543

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.7e-13  Score=108.71  Aligned_cols=55  Identities=27%  Similarity=0.552  Sum_probs=47.7

Q ss_pred             CcCCCcccCceecCCCCCCCcccceEEeccC---CCCccchhhhhcC-----C-CcccEEEEeC
Q 008160          370 DALMGMFHKGVRCDGCGVHPITGPRFKSKVK---DDYDLCSICFAAM-----G-SEADYIRIDR  424 (575)
Q Consensus       370 ~a~~~~vH~GV~CDgC~~~PI~G~RYKCsvC---~DyDLC~~C~~~~-----~-n~H~f~rI~~  424 (575)
                      ..+..+.|.++.||+|+..||.|.||+|.+|   .|||||+.||...     | ..|+|..|.+
T Consensus         5 ~~~~~v~H~~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I~~   68 (69)
T d2fc7a1           5 AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYR   68 (69)
T ss_dssp             SSTTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECS
T ss_pred             ccCCCceECCeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEeec
Confidence            3456899999999999999999999999999   5999999999864     2 3699998864

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1.7e-11  Score=94.11  Aligned_cols=44  Identities=23%  Similarity=0.585  Sum_probs=39.1

Q ss_pred             eecCCCCCCCcccceEEeccCCCCccchhhhhcCCCcccEEEEeCC
Q 008160          380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRP  425 (575)
Q Consensus       380 V~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~~n~H~f~rI~~P  425 (575)
                      ++||+|+. .| |.||||.+|+|||||+.||....+.|+|.+|.-+
T Consensus         7 ~tCd~C~~-~i-~~Ry~C~~C~DfDLC~~C~~~~~H~H~m~k~~~~   50 (52)
T d1tota1           7 YTCNECKH-HV-ETRWHCTVCEDYDLCINCYNTKSHTHKMVKWGLG   50 (52)
T ss_dssp             EEETTTTE-EE-SSEEEESSSSSCEECHHHHHHHCCCSSEEEECSS
T ss_pred             EECcCCCC-cC-CCceECCCCCCcccHHHHhcCCCcCCCeEEecCC
Confidence            67999995 34 8999999999999999999998788999998754

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.9e-06  Score=70.81  Aligned_cols=81  Identities=23%  Similarity=0.404  Sum_probs=68.4

Q ss_pred             ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHhcCceEE
Q 008160            4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR   83 (575)
Q Consensus         4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q~l~~Lr   83 (575)
                      .+-||-||+-.-|||++.-+.    .-.+.++..-|+++=+|+ +.+|+|.|.|-+||+.-|..|+-|.+|+....-.||
T Consensus         2 ~veVKSKFdAEfRRFsl~r~~----~~~fe~F~~Lle~~H~l~-~~~f~i~Y~D~hgDLLPINNDdNf~kA~~sa~PlLR   76 (82)
T d1wmhb_           2 IVEVKSKFDAEFRRFALPRAS----VSGFQEFSRLLRAVHQIP-GLDVLLGYTDAHGDLLPLTNDDSLHRALASGPPPLR   76 (82)
T ss_dssp             EEEEEEEETTEEEEEEEEGGG----CCCHHHHHHHHHHHTTCT-TCCCEEEEECTTSCEEECCSHHHHHHHTTSSSSCEE
T ss_pred             ceEeecccCceEEEeeecccc----ccCHHHHHHHHHHHcCCC-CCcEEEEEecCCCCcccccCchHHHHHHHhcCCcee
Confidence            467999999999999999642    224666888888888885 889999999999999999999999999777667799


Q ss_pred             EEEEec
Q 008160           84 IDVHLN   89 (575)
Q Consensus        84 itV~l~   89 (575)
                      |-||.+
T Consensus        77 i~iQrk   82 (82)
T d1wmhb_          77 LLVQKR   82 (82)
T ss_dssp             EEEECC
T ss_pred             EeEEcC
Confidence            998753

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.4e-05  Score=65.65  Aligned_cols=65  Identities=18%  Similarity=0.413  Sum_probs=57.7

Q ss_pred             eEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHH
Q 008160            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM   75 (575)
Q Consensus         5 ~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~   75 (575)
                      +-||+-|+|++==..+..      .+.+.+|...|+.+.+|+.+-.|++||.||+||=.||.+.-+|-+|+
T Consensus         2 iriK~~y~G~i~it~~~~------~it~e~l~~evr~~C~f~~~q~fT~KWiDeEGDPCTISSQmEL~EA~   66 (83)
T d1wmha_           2 VRVKAYYRGDIMITHFEP------SISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAF   66 (83)
T ss_dssp             EEEEEEETTEEEEEEECT------TCCHHHHHHHHHHHTTCCTTCCCEEEEECTTSCEEECCSHHHHHHHH
T ss_pred             eEEEEEecCeEEEEecCC------CccHHHHHHHHHHHhCCCcCCcEEEEEEcCCCCceeeecHHHHHHHH
Confidence            679999999986666653      45577799999999999999999999999999999999999999983

>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Cell division control protein 24, CDC24, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=2.4e-05  Score=63.67  Aligned_cols=56  Identities=34%  Similarity=0.453  Sum_probs=40.4

Q ss_pred             ccCHHHHHHHHHHHhCCCCC--C--ceEEEEecCCCCeEEEcCchhHHHH---H-HhcCceEEE
Q 008160           29 DLDIDGLRAKIKSLFNFPHD--S--DLTLTYVDEDGDIVTLVDDDDLCDV---M-RQRLKFLRI   84 (575)
Q Consensus        29 dl~~~~L~~ki~~~F~l~~d--~--~~~l~Y~DeDGD~Vtl~dd~DL~~a---~-~q~l~~Lri   84 (575)
                      +..+..|.+||.+-..+...  .  -.-|||+|||||+|+|..|+|..-|   + .|..+.|-|
T Consensus        11 ~i~f~~L~~kI~~Kia~~~~~~~~~~~rlrY~DeDGD~V~i~sddd~~~a~~~~~e~~~~~L~i   74 (77)
T d1pqsa_          11 VWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNEKFLNI   74 (77)
T ss_dssp             CCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHHHHCCCEEEE
T ss_pred             CcCHHHHHHHHHHHHHhccCCCCCccceEEEEcCCCCEEEEeccchHHHHHHHHHhcccceEEE
Confidence            45577799999988754332  1  2367999999999999999998876   2 333455544

>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen activated protein kinase kinase 5, Map2k5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0029  Score=53.37  Aligned_cols=63  Identities=21%  Similarity=0.347  Sum_probs=44.6

Q ss_pred             eEEEEEeCCc-eeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHH
Q 008160            5 MVIKVKYGDT-LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD   73 (575)
Q Consensus         5 ~viKv~~gd~-lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~   73 (575)
                      +||.++-.+. .=-+.++.    ...|+|.++...|.++..=.  ..-.+.|.|||||-||.-+|++|..
T Consensus        14 lVIRI~~~~~~~vDw~V~~----~~~l~F~dvL~~i~q~~p~a--t~taFEYEDEdGDRITVRSDEEl~A   77 (105)
T d2npta1          14 LVIRIKIPNSGAVDWTVHS----GPQLLFRDVLDVIGQVLPEA--TTTAFEYEDEDGDRITVRSDEEMKA   77 (105)
T ss_dssp             EEEEEEETTTEEEEEEECC------CCCHHHHHHHHHHHSTTS--CCSEEEEECTTSCEEEECSHHHHHH
T ss_pred             eEEEEEcCCCceeeeeecC----CceeeHHHHHHHHHHhcccc--cccceeeccccCCEeEEccHHHHHH
Confidence            5665555532 33455552    24788999999999998622  2234489999999999999999883

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0024  Score=54.00  Aligned_cols=60  Identities=27%  Similarity=0.449  Sum_probs=46.6

Q ss_pred             CceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHHHh
Q 008160           13 DTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ   77 (575)
Q Consensus        13 d~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~~q   77 (575)
                      .++|-+.+.  ++=...=.+-+|..-|++.|+-.   ++.|.|.|-+||+|.|-||+|+...++|
T Consensus        16 ~~~rDI~ve--edl~~~P~ykdLl~lmr~~f~~~---dIaLNYrD~eGDLIRllddeDv~LMv~~   75 (105)
T d1oeyj_          16 STIKDIAVE--EDLSSTPLLKDLLELTRREFQRE---DIALNYRDAEGDLVRLLSDEDVALMVRQ   75 (105)
T ss_dssp             EEEEEEEEC--SCTTCCCCHHHHHHHHHHHHCCS---SEEEEEECTTSCEEECCSHHHHHHHHHH
T ss_pred             ceeeeEEEc--cccccCccHHHHHHHHHHHhccc---eeEeeeecCCCCEEEEcchhhHHHHHHH
Confidence            456766665  22223335788999999999854   9999999999999999999999876555

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.75  E-value=0.014  Score=47.88  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             ceecCCCCCCCcccceEEeccCCCCccchhhhhcC
Q 008160          379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM  413 (575)
Q Consensus       379 GV~CDgC~~~PI~G~RYKCsvC~DyDLC~~C~~~~  413 (575)
                      ...|+.|+. ++.|.+|+|..| ||+|+..|....
T Consensus        47 ~~~C~~C~~-~~~g~~Y~C~~C-~f~LH~~CA~~P   79 (89)
T d1v5na_          47 VYTCDKCEE-EGTIWSYHCDEC-DFDLHAKCALNE   79 (89)
T ss_dssp             SCCCTTTSC-CCCSCEEECTTT-CCCCCHHHHHCS
T ss_pred             CCEeCCCCC-CcCCcEeEeccC-CCEecHHHcCCC
Confidence            468999996 699999999999 799999998764

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.13  Score=41.80  Aligned_cols=74  Identities=16%  Similarity=0.315  Sum_probs=54.3

Q ss_pred             ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEec-CCCCeEEEcCchhHHHHHHhcCceE
Q 008160            4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVD-EDGDIVTLVDDDDLCDVMRQRLKFL   82 (575)
Q Consensus         4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~D-eDGD~Vtl~dd~DL~~a~~q~l~~L   82 (575)
                      -+||||.|-     |++-++-  .--+.++.|+.||.+-|.|.+ .-.+|.|+= +++++|.|. ++++.+|=.|-.+ =
T Consensus         5 ~~~vkVh~~-----fTVal~v--~~G~~y~~L~~lvs~KL~l~~-~~~~LSY~~~~~~e~v~ls-ee~me~aWs~v~~-~   74 (82)
T d1oeya_           5 AYTLKVHYK-----YTVVMKT--QPGLPYSQVRDMVSKKLELRL-EHTKLSYRPRDSNELVPLS-EDSMKDAWGQVKN-Y   74 (82)
T ss_dssp             CEEEEEESS-----SEEEEEE--CTTCCHHHHHHHHHHHTTCCG-GGCCEEECCTTCSSCEECC-TTTHHHHHTTCBT-T
T ss_pred             CEEEEEEEE-----EEEEEEc--cCCCCHHHHHHHHHHHhCCCh-hheEEEeccCCCCceeccc-hHHHHHHHHhccC-C
Confidence            379999996     6666652  246678999999999999996 578899983 457788875 7778877455432 4


Q ss_pred             EEEEE
Q 008160           83 RIDVH   87 (575)
Q Consensus        83 ritV~   87 (575)
                      +||+.
T Consensus        75 ~LtLw   79 (82)
T d1oeya_          75 CLTLW   79 (82)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            66654

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.06  E-value=0.36  Score=39.19  Aligned_cols=64  Identities=14%  Similarity=0.287  Sum_probs=46.2

Q ss_pred             ceEEEEEeCCc--eeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCC--eEEEcCchhHH
Q 008160            4 TMVIKVKYGDT--LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGD--IVTLVDDDDLC   72 (575)
Q Consensus         4 ~~viKv~~gd~--lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD--~Vtl~dd~DL~   72 (575)
                      .++|+++..+.  -+.|.+.+.    .+++...|..+|+++|+++++ ...|-|.|.+.+  .|.|++|+..+
T Consensus         9 ~iti~i~~~~~~~~~~~~~kv~----~~~TV~~LK~~i~~~~gip~~-~qrL~y~~~~~~~~~~~l~~d~~tL   76 (97)
T d1wjna_           9 LLTLKIKCSNQPERQILEKQLP----DSMTVQKVKGLLSRLLKVPVS-ELLLSYESSKMPGREIELENDLQPL   76 (97)
T ss_dssp             EEEEEEEESSCSSSCCEEEEEE----TTSBHHHHHHHHHTTTTCCTT-TCEEEEECTTSCSCEEECCCSSSBS
T ss_pred             eEEEEEEeCCCCCCceEEEEcC----CCCCHHHHHHHHHHHHCcChH-HeEEEecCCCCCcccceecCCCcCH
Confidence            37788887663  455555553    356788899999999999975 567789998654  57788776433

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.86  E-value=0.9  Score=36.23  Aligned_cols=64  Identities=11%  Similarity=0.215  Sum_probs=44.4

Q ss_pred             CCcceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCch
Q 008160            1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD   69 (575)
Q Consensus         1 ~~~~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~   69 (575)
                      |-.-+-|++...-+-.++...+.    .++....|..||.++|++++ ....|-|.|.+++++..-+++
T Consensus         1 ms~~~~l~it~~~t~~~~E~r~~----~~~TV~~LK~kle~~~Gip~-~~q~L~~~~~~~~~~~~l~dd   64 (90)
T d1t0ya_           1 MTEVYDLEITTNATDFPMEKKYP----AGMSLNDLKKKLELVVGTTV-DSMRIQLFDGDDQLKGELTDG   64 (90)
T ss_dssp             CCCEEEEEEEESSCCSCEEEEEE----TTSBHHHHHHHHHHHHCCCT-TTEEEEEECSSSSEEEECCCC
T ss_pred             CCcEEEEEEEECCCccEEEEecC----CCCCHHHHHHHHHHHHCCCh-hheEEEEeCCCCCcccccccC
Confidence            44545677777655332332221    23457779999999999996 588889999999988855544

>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 2, MEKK 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.06  E-value=5.5  Score=31.73  Aligned_cols=76  Identities=22%  Similarity=0.349  Sum_probs=57.4

Q ss_pred             ceEEEEEeCCceeeeeeccCCCCCcccCHHHHHHHHHHHhCCCCCCceEEEEecCCCCeEEEcCchhHHHHH-----Hhc
Q 008160            4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM-----RQR   78 (575)
Q Consensus         4 ~~viKv~~gd~lRRf~~~~~~n~~~dl~~~~L~~ki~~~F~l~~d~~~~l~Y~DeDGD~Vtl~dd~DL~~a~-----~q~   78 (575)
                      ++-||..|.+--|=+.++-      -+.+.+|..|+..+|.-.    +.|-|.. .-=+|-|-+.+||-.|+     ...
T Consensus         2 dvRVKfE~~gEkRIi~f~R------Pv~~~dl~~kv~~afGq~----ldl~y~n-~EL~IPl~~Q~DLDkAvellDrs~~   70 (82)
T d2nptb1           2 DVRVKFEHRGEKRILQFPR------PVKLEDLRSKAKIAFGQS----MDLHYTN-NELVIPLTTQDDLDKAVELLDRSIH   70 (82)
T ss_dssp             CEEEEEEETTEEEEEEECS------SCCHHHHHHHHHHHHTSC----EEEEEEE-TTEEEECCCHHHHHHHHHHHHHCSS
T ss_pred             CcEEEEEecCceEEEecCC------CccHHHHHHHHHHHhCCe----eeEEEec-CeEEEecccHHHHHHHHHHHccCcc
Confidence            5779999999988888872      345667999999999765    5567773 45567788888998873     223


Q ss_pred             CceEEEEEEecC
Q 008160           79 LKFLRIDVHLNN   90 (575)
Q Consensus        79 l~~LritV~l~~   90 (575)
                      .+.|||.+.+++
T Consensus        71 ~ksLrilL~~~~   82 (82)
T d2nptb1          71 MKSLKILLVING   82 (82)
T ss_dssp             CCSEEEEEEECC
T ss_pred             ccceEEEEEecC
Confidence            577999987653