Citrus Sinensis ID: 008178

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----

MEISTEAKLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFSDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNEAQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAAGHPKDGNNDNKLEVDRISSFSWSGQRRMPSYLNKLVFPENFLTALRTIAMQEDEISKVSSLLEELVGSGGERQPSDAEVRAAVWETCGDSGALQLLVDLLQAKLTELEESSGTEDYDSELLLKSCITESQGQHASCENNSSEETNGWTQHKMSRKTWSSIVYRRGQKELALLFLKEAEHALQLALTEGN

ccccccccHHHHHHHHHHcccEEcccEEEEcccccEEEEEEccccccccEEEcccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEEcccccccccEEEccccccccHHHHHHcccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHccc

cccccHHHHHHHHHHHHHcccEEcccEEEEccccccEEEEEEccccccEEEEEcHHEEEcHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHcccccccccEccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccEcccccccHHcccccccccccccccccHHHHHHHHHHHcccccccHcccccccccccccccccccccEEEEHEEHccccccccEEEEEcccccccccccccEEEEEcccccccccEEEEccccccHHHHHHHcccEcccccccEEEEEccHHHHccccccHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccHHcHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHccccc

MEISTEAKLEPFLQWLQVNKVELRgckikysdeskgfgifssnefsdgVLLVVpldlaitpmrvlqdpligpecramfedgevdDRFLMILFLTVERLrknsswkpyldmlpttfgnplwftddellELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLdgdsesevsfeDFLWANSIFWTralniplphsyvfpqnqedlnkydsinnsaelsndhnsrgelingLNDIKNEAQRVNSQVNGATSTLTSTQGETLWIeglvpgidfcnhdlkaaatwevdgtglitgvPFSMYLLSVerssfhsekEISISYGNKGNEELLYLYGFvidnnpddylmihypaeaihsiplsdsKALLLEEQKAQLRCLlpksllehgffaaghpkdgnndnklevdrissfswsgqrrmpsylnklvfpeNFLTALRTIAMQEDEISKVSSLLEELVgsggerqpsdaEVRAAVWETCGDSGALQLLVDLLQAKLTEleessgtedydseLLLKSCitesqgqhascennsseetngwtqhkmsrktWSSIVYRRGQKELALLFLKEAEHALQLALTEGN

meisteaklepflqwlQVNKVELRGCKIKYSDESKGFGIFSSNEFSDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERlrknsswkpyLDMLPTTFGNPLWFTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNEAQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAaghpkdgnndnkLEVDRISSfswsgqrrmpsylnklvFPENFLTALRTIAMQEDEISKVSSLLEELVGsggerqpsdAEVRAAVWETCGDSGALQLLVDLLQAKLTELeessgtedydsELLLKSCITEsqgqhascennsseetngwtqhkmsrKTWSSIVYRRGQKELALLFLKEAEHALQLALTEGN

MEISTEAKLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFSDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFTDDELLELKGTTLYRATELQKQNlltlyddkvkdlvkkllvldGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNEAQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAAGHPKDGNNDNKLEVDRISSFSWSGQRRMPSYLNKLVFPENFLTALRTIAMQEDEISKVSSLLEELVGSGGERQPSDAEVRAAVWETCGDSGalqllvdllqaklTELEESSGTEDYDSELLLKSCITESQGQHASCENNSSEETNGWTQHKMSRKTWSSIVYRRGQKelallflkeaehalQLALTEGN

********LEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFSDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFP*******************************************************TQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAAG**************RISSFSWSGQRRMPSYLNKLVFPENFLTALRTIAMQE**************************VRAAVWETCGDSGALQLLVDLLQAKLT*************************************************KTWSSIVYRRGQKELALLFLKEAEHALQL******

*****EA***PFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFSDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNEAQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAA**************************RMPSYLNKLVFPENFLTALRTIAMQEDEISKVS*******************VRAAVWETCGDSGALQLLVDLLQA********************************************************SIVYRRGQKELALLFLKEAEHALQLAL****

MEISTEAKLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFSDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNEAQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAAGHPKDGNNDNKLEVDRISSFSWSGQRRMPSYLNKLVFPENFLTALRTIAMQEDEISKVSSLL***************EVRAAVWETCGDSGALQLLVDLLQAKLTEL*********DSELLLKSCIT***************************KTWSSIVYRRGQKELALLFLKEAEHALQLALTEGN

*****EAKLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFSDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNEAQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAAG************************RRMPSYLNKLVFPENFLTALRTIAMQEDEISKVSSLLEELVGSGGERQPSDAEVRAAVWETCGDSGALQLLVDLLQAKLTELEESS*TEDYDSELLLKSC*****************************KTWSSIVYRRGQKELALLFLKEAEHALQLA*****

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MEISTEAKLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFSDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGxxxxxxxxxxxxxxxxxxxxxLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAAGHPKDGNNDNKLEVDRISSFSWSGQRRMPSYLNKLVFPENFLTALRTIAMQEDEISKVSSLLEELVGSGGERQPSDAEVRAAVWETCGDSGALQLLVDLLQAKLTELEESSGTEDYDSELLLKSCITESQGQHASCENNSSEETNGWTQHKMSRKTWSSIVYRRGQKELALLFLKEAEHALQLALTEGN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		575	2.2.26 [Sep-21-2011]
Q43088		489	Ribulose-1,5 bisphosphate	N/A	no	0.349	0.411	0.3	8e-11
Q9XI84		482	[Fructose-bisphosphate al	no	no	0.290	0.346	0.288	6e-09
P94026		491	Ribulose-1,5 bisphosphate	N/A	no	0.292	0.342	0.270	1e-07
E2RBS6		588	Histone-lysine N-methyltr	yes	no	0.292	0.285	0.257	2e-07
B2KI88		594	Histone-lysine N-methyltr	N/A	no	0.293	0.284	0.259	4e-07
Q86TU7		594	Histone-lysine N-methyltr	yes	no	0.292	0.282	0.257	5e-07
A9X1D0		595	Histone-lysine N-methyltr	N/A	no	0.292	0.282	0.257	5e-07
B1MTJ4		595	Histone-lysine N-methyltr	N/A	no	0.292	0.282	0.257	6e-07
B5FW36		595	Histone-lysine N-methyltr	N/A	no	0.292	0.282	0.257	8e-07
B0VX69		595	Histone-lysine N-methyltr	yes	no	0.292	0.282	0.252	2e-06

>sp\|Q43088\|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1	Back alignment and function desciption

 Score = 69.3 bits (168), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 29/230 (12%)

Query: 3   ISTEAKLEP----FLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFS-DGVLLVVPLDL 57
           + TE  L P    F +WLQ   V      +K S  ++G G+ +  + S + V+L VP  L
Sbjct: 44  VGTEPSLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRL 103

Query: 58  AITPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGN 117
            I P  V     IG  C       E+     +ILFL  ER R++S WK Y  +LP    +
Sbjct: 104 WINPDAVAASE-IGRVC------SELKPWLSVILFLIRERSREDSVWKHYFGILPQETDS 156

Query: 118 PLWFTDDELLELKGTTLYRAT----ELQKQNLLTLYDDKVKDLVKKLLVLDGDSESEVSF 173
            ++++++EL EL+G+ L + T    E  K   L L  + +  L  K L  D      V+ 
Sbjct: 157 TIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEII--LPNKRLFPD-----PVTL 209

Query: 174 EDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNS 223
           +DF WA  I  +RA       S +  +N   +   D IN+SA ++ + ++
Sbjct: 210 DDFFWAFGILRSRAF------SRLRNENLVVVPMADLINHSAGVTTEDHA 253

Methylates 'Lys-14' of the large subunit of RuBisCO.
Pisum sativum (taxid: 3888)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 7

>sp\|Q9XI84\|RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=LSMT-L PE=1 SV=1	Back alignment and function description

>sp\|P94026\|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1	Back alignment and function description

>sp\|E2RBS6\|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B2KI88\|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|Q86TU7\|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1	Back alignment and function description

>sp\|A9X1D0\|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B1MTJ4\|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|B5FW36\|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B0VX69\|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		575
225430662		561	PREDICTED: uncharacterized protein LOC10	0.972	0.996	0.693	0.0
296085170		565	unnamed protein product [Vitis vinifera]	0.979	0.996	0.693	0.0
224130176		551	predicted protein [Populus trichocarpa]	0.918	0.958	0.667	0.0
297848312		548	SET domain-containing protein [Arabidops	0.930	0.976	0.653	0.0
79316289		547	SET domain-containing protein [Arabidops	0.932	0.979	0.653	0.0
449525577		553	PREDICTED: uncharacterized protein LOC10	0.958	0.996	0.637	0.0
449451195		553	PREDICTED: uncharacterized protein LOC10	0.958	0.996	0.634	0.0
42561607		572	SET domain-containing protein [Arabidops	0.933	0.938	0.629	0.0
357507175		571	Ribulose-1,5 bisphosphate carboxylase/ox	0.92	0.926	0.589	0.0
357125312		558	PREDICTED: uncharacterized protein LOC10	0.942	0.971	0.556	1e-178

>gi\|225430662\|ref\|XP_002268533.1\| PREDICTED: uncharacterized protein LOC100267311 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  802 bits (2072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/577 (69%), Positives = 462/577 (80%), Gaps = 18/577 (3%)

Query: 1   MEISTEAKLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFSDGVLLVVPLDLAIT 60
           M  + EAKL+ FLQWLQ+N+VELRGC+IKY D +KGFGIF +N+ SDG+ LVVPLDLAIT
Sbjct: 1   MASTEEAKLQHFLQWLQLNRVELRGCEIKYCDSNKGFGIFYANDASDGIPLVVPLDLAIT 60

Query: 61  PMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLW 120
           PMRVLQDP +GPECRAMFE+GEVDDR LMILFLTVERLRKNSSWKPYLDMLPTTFG PLW
Sbjct: 61  PMRVLQDPFLGPECRAMFEEGEVDDRLLMILFLTVERLRKNSSWKPYLDMLPTTFGTPLW 120

Query: 121 FTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLDGDSESEVSFEDFLWAN 180
           F DDE +ELKGT+++RATELQK+ L +LYDDKVKDLVKKLL+LDGDS+ EV FEDFLWAN
Sbjct: 121 FIDDEFIELKGTSVHRATELQKKQLQSLYDDKVKDLVKKLLILDGDSKGEVHFEDFLWAN 180

Query: 181 SIFWTRALNIPLPHSYVFPQNQEDLNKY--DSINNSAELSNDHNSRGELINGLNDIKNEA 238
           SIFWTRALNIPLP SYVFPQ QE+ N    + I +S   + D  S G L++G+++   + 
Sbjct: 181 SIFWTRALNIPLPRSYVFPQIQEEQNSCIPNIIKDSGAFT-DQISSGNLVSGMDEKSTDV 239

Query: 239 QRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMY 298
               SQVN  TS  +S Q E LW+EGLVPGIDFCNHDLKAAATWEVD TGL TGVP SMY
Sbjct: 240 HGFESQVNRGTS--SSMQEEILWVEGLVPGIDFCNHDLKAAATWEVDNTGLKTGVPLSMY 297

Query: 299 LLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDS 358
           LLSVE+S  H +KEISISYGNKGNEELLYLYGFVIDNNPDDYLM+HYP E   ++P S+S
Sbjct: 298 LLSVEQSPCHMQKEISISYGNKGNEELLYLYGFVIDNNPDDYLMVHYPMELFKNVPFSES 357

Query: 359 KALLLEEQKAQLRCLLPKSLLEHGFFAAGHPKDGNNDNKLEVDRISSFSWSGQRRMPSYL 418
           K  LLE QKA++RCLL K+LL+ GFF A   K+  N    +  ++ ++SWSGQR+ PSYL
Sbjct: 358 KGQLLEAQKAEMRCLLHKTLLDRGFFPASTLKNEQNGKSTD-HQVCNYSWSGQRKTPSYL 416

Query: 419 NKLVFPENFLTALRTIAMQEDEISKVSSLLEELVGSGGERQPSDAEVRAAVWETCGDSGA 478
           NKLVFPE FLTALRTI+M+EDE+S+VSSLLEEL  SGG RQP D+E RAAVWE CGDSGA
Sbjct: 417 NKLVFPEAFLTALRTISMEEDELSRVSSLLEELAESGG-RQPLDSETRAAVWEACGDSGA 475

Query: 479 LQLLVDLLQAKLTELEESSGTEDYDSELLLKSCITESQGQHASCENNSSEETNGWTQHKM 538
           LQ+LVDLL  K+ +LEE SGTED D+ELL K+ +TE   QH SC             HKM
Sbjct: 476 LQVLVDLLNVKMMDLEEGSGTEDNDTELLEKALMTEIPEQHTSC-----------IPHKM 524

Query: 539 SRKTWSSIVYRRGQKELALLFLKEAEHALQLALTEGN 575
           SR  WSSIVYRRGQK+L  LFLKEAEHALQL+L+EGN
Sbjct: 525 SRNRWSSIVYRRGQKQLTRLFLKEAEHALQLSLSEGN 561

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296085170\|emb\|CBI28665.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224130176\|ref\|XP_002320771.1\| predicted protein [Populus trichocarpa] gi\|222861544\|gb\|EEE99086.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297848312\|ref\|XP_002892037.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297337879\|gb\|EFH68296.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|79316289\|ref\|NP_001030933.1\| SET domain-containing protein [Arabidopsis thaliana] gi\|63003834\|gb\|AAY25446.1\| At1g01920 [Arabidopsis thaliana] gi\|332189233\|gb\|AEE27354.1\| SET domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449525577\|ref\|XP_004169793.1\| PREDICTED: uncharacterized protein LOC101224730 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449451195\|ref\|XP_004143347.1\| PREDICTED: uncharacterized protein LOC101219815 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|42561607\|ref\|NP_171694.3\| SET domain-containing protein [Arabidopsis thaliana] gi\|332189232\|gb\|AEE27353.1\| SET domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357507175\|ref\|XP_003623876.1\| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [Medicago truncatula] gi\|355498891\|gb\|AES80094.1\| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357125312\|ref\|XP_003564338.1\| PREDICTED: uncharacterized protein LOC100842937 [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		575
TAIR\|locus:2025477		572	AT1G01920 "AT1G01920" [Arabido	0.946	0.951	0.574	2.1e-164
CGD\|CAL0004578		579	orf19.7326 [Candida albicans (	0.135	0.134	0.395	1.6e-10
SGD\|S000001031		585	EFM1 "Lysine methyltransferase	0.222	0.218	0.303	2.1e-10
POMBASE\|SPBC1709.13c		547	set10 "ribosomal lysine methyl	0.179	0.188	0.364	2.7e-10
TAIR\|locus:2014764		482	LSMT-L "lysine methyltransfera	0.292	0.348	0.273	2.7e-10
UNIPROTKB\|E2RBS6		588	SETD3 "Histone-lysine N-methyl	0.32	0.312	0.235	1.5e-09
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.32	0.309	0.23	1.6e-09
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.32	0.309	0.23	2.1e-09
UNIPROTKB\|B1MTJ4		595	SETD3 "Histone-lysine N-methyl	0.32	0.309	0.23	2.1e-09
UNIPROTKB\|B5FW36		595	SETD3 "Histone-lysine N-methyl	0.32	0.309	0.235	2.1e-09

TAIR\|locus:2025477 AT1G01920 "AT1G01920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1600 (568.3 bits), Expect = 2.1e-164, P = 2.1e-164
 Identities = 343/597 (57%), Positives = 401/597 (67%)

Query:     1 MEISTE-AKLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSN--EFSDGVLLVVPLDL 57
             M IS E AKLE FL WLQVN  ELRGC IKYSD  KGFGIF+S   + SD VLLVVPLDL
Sbjct:     1 MAISEEEAKLERFLDWLQVNGGELRGCNIKYSDSLKGFGIFASTSTQASDEVLLVVPLDL 60

Query:    58 AITPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGN 117
             AITPMRVLQDPL+GPEC+ MFE G+VDDRFLMILFLT+ERLR NSSWKPYLDMLPT FGN
Sbjct:    61 AITPMRVLQDPLLGPECQKMFEQGQVDDRFLMILFLTLERLRINSSWKPYLDMLPTRFGN 120

Query:   118 PLWFTDDELLELKGTTLYRATELQKQNXXXXXXXXXXXXXXXXXXXXGDSESEVSFEDFL 177
             PLWF+DD++LELKGT LY ATELQK+                     GDSES+VSFE FL
Sbjct:   121 PLWFSDDDILELKGTNLYHATELQKKKLLSLYHDKVEVLVTKLLILDGDSESKVSFEHFL 180

Query:   178 WANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNE 237
             WANS+FW+RALNIPLPHS+VFPQ+Q+D  +  S + S E +         +N  N+ K +
Sbjct:   181 WANSVFWSRALNIPLPHSFVFPQSQDDTGECTSTSESPETAP--------VNS-NEEKGK 231

Query:   238 AQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSM 297
             +      +  A    +   G+T+W+EGLVPGIDFCNHDLK  ATWEVDG G ++ VPFSM
Sbjct:   232 S------LTSAQPAPSVGSGDTIWVEGLVPGIDFCNHDLKPVATWEVDGIGSVSRVPFSM 285

Query:   298 YLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMI-------------- 343
             YLLSV +     +KEISISYGNKGNEELLYLYGFVIDNNPDDYLMI              
Sbjct:   286 YLLSVAQRPI-PKKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIKEMLVNFVLTSVVT 344

Query:   344 --------HYPAEAIHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAAGHPKDGNND 395
                     HYP EAI SIP SDSK  LLE Q AQLRCLLPKS+L HGFF         +D
Sbjct:   345 FNNGFIQVHYPVEAIPSIPFSDSKGQLLEAQNAQLRCLLPKSVLNHGFFPRTTSVIRESD 404

Query:   396 NKLEVDRISSFSWSGQRRMPSYLNKLVFPENFLTALRTIAMQEDEISKVSSLLEELVGSG 455
              K E  R  +FSWSG+R+MP+Y+NKLVFPE+F+T LRTIAMQE+EI KVS++LEELV S 
Sbjct:   405 EK-ETVRSCNFSWSGKRKMPTYMNKLVFPEDFMTGLRTIAMQEEEIYKVSAMLEELVESR 463

Query:   456 GERQPSDAEVRAAVWETCGDSGXXXXXXXXXXXXXTELEESSGTEDYDSELLLKSCITES 515
                QPS+ EVR AVWE CGDSG              +LEE+SGTE+ D+ LL ++C+ ES
Sbjct:   464 QGEQPSETEVRMAVWEACGDSGALQLLVDLLNSKMMKLEENSGTEEQDARLLEEACVLES 523

Query:   516 QGQHASCENNSSEETNGWTQHKMSRKTWSSIVYRRGQKXXXXXXXXXXXXXXQLALT 572
                     +  S + +G    +MSR  WSS+VYRRGQK               LAL+
Sbjct:   524 --------HEESRDLDG---RRMSRNKWSSVVYRRGQKQLTRLLLKEAEHALHLALS 569

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

CGD\|CAL0004578 orf19.7326 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

SGD\|S000001031 EFM1 "Lysine methyltransferase involved in the monomethylation of eEF1A (Te" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

POMBASE\|SPBC1709.13c set10 "ribosomal lysine methyltransferase Set10" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

TAIR\|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RBS6 SETD3 "Histone-lysine N-methyltransferase setd3" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)]	Back alignment and assigned GO terms

UNIPROTKB\|B5FW36 SETD3 "Histone-lysine N-methyltransferase setd3" [Otolemur garnettii (taxid:30611)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026746001	SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (565 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		575
KOG1338		466	consensus Uncharacterized conserved protein [Funct	100.0
KOG1337		472	consensus N-methyltransferase [General function pr	99.97
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.56
PF09273		128	Rubis-subs-bind: Rubisco LSMT substrate-binding; I	99.47
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	97.98
KOG2589		453	consensus Histone tail methylase [Chromatin struct	93.8
KOG1085		392	consensus Predicted methyltransferase (contains a	92.53
KOG4442		729	consensus Clathrin coat binding protein/Huntingtin	86.41
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	84.57

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=5.8e-35  Score=293.59  Aligned_cols=256  Identities=20%  Similarity=0.254  Sum_probs=203.5

Q ss_pred             hCHHHHHHHHHHCC-ccccC-eeEEeec---CCceeEEEEcCCC-CCCeEEEeCcccccChhhhccCCCCChhhhhhhcC
Q 008178            7 AKLEPFLQWLQVNK-VELRG-CKIKYSD---ESKGFGIFSSNEF-SDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFED   80 (575)
Q Consensus         7 ~~~~~fl~Wl~~~G-~~~~~-v~i~~~~---~~~GrGl~A~~dI-~ge~l~~IP~~~~ls~~~~~~~~~~g~~~~~~l~~   80 (575)
                      +....|+.|++..+ .+.++ |.+...+   ...|+|++|+++| +|+.||++|++++|+..++..-..+....+.+++ 
T Consensus         7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~Ln-   85 (466)
T KOG1338|consen    7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLLN-   85 (466)
T ss_pred             cHHHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHhh-
Confidence            44789999999987 77776 7666542   2358999999999 9999999999999998886532213333444453 


Q ss_pred             CCCChHHHHHHHHHHHhhcCC-CCcHHHHhhcCC--CCCCCCCCCHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008178           81 GEVDDRFLMILFLTVERLRKN-SSWKPYLDMLPT--TFGNPLWFTDDELLEL-KGTTLYRATELQKQNLLTLYDDKVKDL  156 (575)
Q Consensus        81 ~~l~~~~~LaL~Ll~E~~~~~-S~w~pYl~~LP~--~~~~pl~ws~~el~~L-~gt~l~~~~~~~~~~~~~~y~~~~~~l  156 (575)
                       .++.|..|++.|++|..-+. |+|+|||+.+|+  ..++|+||+++|++.| +||.+.+ +.++.+++.++|...+.++
T Consensus        86 -e~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee-~~Kd~aeI~~~~i~~i~pf  163 (466)
T KOG1338|consen   86 -EVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEE-TVKDKAEIEKDFIFVIQPF  163 (466)
T ss_pred             -cCCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchh-hHhHHHHHHHHHHHHHHHH
Confidence             68899999999999987654 999999999998  5789999999999866 5555544 8889999999999999999


Q ss_pred             HHHhhccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccccccccccCcCcccccccccccchh
Q 008178          157 VKKLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKN  236 (575)
Q Consensus       157 ~~~~~~~~~~~~~~~t~~~f~WA~s~V~SRaf~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  236 (575)
                      .+.+|.++    ..+++++|+.|++++++++|.++...+         .++  .+ ++.                     
T Consensus       164 ~~~~p~vf----s~~slEdF~y~~Al~laysfdve~~~s---------~~~--~e-ee~---------------------  206 (466)
T KOG1338|consen  164 KQHCPIVF----SRPSLEDFMYAYALGLAYSFDVEFLLS---------LDN--LE-EES---------------------  206 (466)
T ss_pred             HHhCcchh----cccCHHHHHHHHHHHHHHheeeehhcc---------hhh--hh-hhh---------------------
Confidence            99988765    458999999999999999999986532         000  00 000                     


Q ss_pred             hhhhhccccCCCccccccCCCCccccceecchhcccCCCCC-CCceEEEcCCCcccccCcceeEEEeecccCCCCCeEEe
Q 008178          237 EAQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLK-AAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISI  315 (575)
Q Consensus       237 ~~~~~~~~~~g~~~~~~~~~~e~~~~~~LVPl~DmlNH~~~-~~~~~~~d~~g~~~~~~~s~~l~~~a~~~i~~GeEI~i  315 (575)
                                          +......+|+|.+||+||+.. +|+...|+.+          |+.|+|.|+|.+|+||++
T Consensus       207 --------------------e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~N----------cL~mva~r~iekgdev~n  256 (466)
T KOG1338|consen  207 --------------------EIECNGKLMTPIADFLNHDGLKANANLRYEDN----------CLEMVADRNIEKGDEVDN  256 (466)
T ss_pred             --------------------ccccCcccccchhhhhccchhhcccceeccCc----------ceeeeecCCCCCcccccc
Confidence                                000123699999999999986 7888887654          799999999999999999


Q ss_pred             ccCCCChHHHHHhCCcccC
Q 008178          316 SYGNKGNEELLYLYGFVID  334 (575)
Q Consensus       316 sYG~~~N~eLL~~YGFv~~  334 (575)
                      +||-++|+  |++||.+.=
T Consensus       257 ~dg~~p~~--l~~l~ka~c  273 (466)
T KOG1338|consen  257 SDGLKPMG--LLKLTKALC  273 (466)
T ss_pred             ccccCcch--hhhhhhhcc
Confidence            99999999  778887763

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices	Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		575
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		2e-10
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		3e-10
3smt_A		497	Crystal Structure Of Human Set Domain-Containing Pr		3e-07

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

Iteration: 1

Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 100/224 (44%), Gaps = 21/224 (9%) Query: 5 TEAKLEP----FLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFS-DGVLLVVPLDLAI 59 TE L P F +WLQ V +K S ++G G+ + + S + V+L VP L I Sbjct: 2 TEPSLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWI 61 Query: 60 TPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPL 119 P V IG C E+ +ILFL ER R++S WK Y +LP + + Sbjct: 62 NPDAVAASE-IGRVC------SELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTI 114 Query: 120 WFTDDELLELKGTTLYRATELQKQNXXXXXXXXXXXXXXXXXXXXGDSESEVSFEDFLWA 179 +++++EL EL+G+ L + T K+ D V+ +DF WA Sbjct: 115 YWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDP---VTLDDFFWA 171 Query: 180 NSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNS 223 I +RA S + +N + D IN+SA ++ + ++ Sbjct: 172 FGILRSRAF------SRLRNENLVVVPMADLINHSAGVTTEDHA 209

PyMOL of 1mlv

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		575
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	8e-35
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	2e-34
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	1e-10
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	1e-28
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

 Score =  136 bits (344), Expect = 8e-35
 Identities = 90/569 (15%), Positives = 156/569 (27%), Gaps = 153/569 (26%)

Query: 1   MEISTEAKLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFSDG-VLLVVPLDLAI 59
            +   E      ++W   N   + G ++    + +GFG+ ++ +     + L VP  L +
Sbjct: 70  FDGKREDYFPDLMKWASENGASVEGFEMVN-FKEEGFGLRATRDIKAEELFLWVPRKLLM 128

Query: 60  TPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPL 119
           T     ++ ++GP         +      +   L  ER   NS W+PY+  LP+ +  PL
Sbjct: 129 TVESA-KNSVLGPLYSQDRIL-QAMGNIALAFHLLCERASPNSFWQPYIQTLPSEYDTPL 186

Query: 120 WFTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLDGDSESEVSFEDFLWA 179
           +F +DE+             LQ    +     + K+  +                     
Sbjct: 187 YFEEDEVRY-----------LQSTQAIHDVFSQYKNTAR--------------------- 214

Query: 180 NSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNEAQ 239
               +     +   H +      +D   Y+    +        ++    +G         
Sbjct: 215 ---QYAYFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVT----- 266

Query: 240 RVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYL 299
                                    L+P  D CNH      T                  
Sbjct: 267 -----------------------LALIPLWDMCNHTNGLITTGYNLEDD---------RC 294

Query: 300 LSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSK 359
             V    F + ++I I YG + N E +   GF  DNN  D + I         +  SD  
Sbjct: 295 ECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLG------VSKSDR- 347

Query: 360 ALLLEEQKAQLRCLLPKSLLEHGFFAAGHPKDGNNDNKLEVDRISSFSWSGQRRMPSYLN 419
              L   KA++       L   G                                  +  
Sbjct: 348 ---LYAMKAEV-------LARAG-------------------------IPTSSVFALHFT 372

Query: 420 KLVFPENFLTALRTIAMQEDEISKVSSLLEELVGSGGERQPSDAEVRAAVWETCGDSGAL 479
           +       L  LR   M E+E      L E L+G     +               +    
Sbjct: 373 EPPISAQLLAFLRVFCMTEEE------LKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLW 426

Query: 480 QLLVDLLQAKLTELEESSGTEDYDSELLLKSCITESQGQHASCENNSSEETNGWTQHKMS 539
             L D     L   +    T + D  +L                            H +S
Sbjct: 427 TFLEDRASLLLKTYKT---TIEEDKSVL--------------------------KNHDLS 457

Query: 540 RKTWSSIVYRRGQKELALLFLKEAEHALQ 568
            +   +I  R G+KE+    +K A    +
Sbjct: 458 VRAKMAIKLRLGEKEILEKAVKSAAVNRE 486

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		575
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	99.14
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	99.11
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	98.96
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	97.86
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	97.23
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	97.02
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	96.86
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	96.52
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	96.39
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	96.27
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	96.27
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	95.99
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	95.76
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	95.63
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	95.6
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	95.5
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	95.43
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	95.4
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	94.84
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	88.83
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	87.46
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	86.06
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	83.08
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	81.78

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

Probab=100.00  E-value=4.8e-66  Score=558.70  Aligned_cols=410  Identities=21%  Similarity=0.253  Sum_probs=307.1

Q ss_pred             hhhCHHHHHHHHHHCCccccC-eeEEeecCCceeEEEEcCCC-CCCeEEEeCcccccChhhhccCCCCChhhhhhhcC-C
Q 008178            5 TEAKLEPFLQWLQVNKVELRG-CKIKYSDESKGFGIFSSNEF-SDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFED-G   81 (575)
Q Consensus         5 ~~~~~~~fl~Wl~~~G~~~~~-v~i~~~~~~~GrGl~A~~dI-~ge~l~~IP~~~~ls~~~~~~~~~~g~~~~~~l~~-~   81 (575)
                      ..+++++|++|++++|+.+++ |.|...+.+.||||+|+++| +|++|++||++++||..++.    +++.+....+. .
T Consensus        18 ~~~~~~~ll~W~~~~G~~~~~~v~i~~~~~~~G~Gv~A~~dI~~ge~ll~IP~~~~ls~~~~~----~~~~l~~~~~~l~   93 (449)
T 3qxy_A           18 DLDPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCS----IGGLLERERVALQ   93 (449)
T ss_dssp             -CHHHHHHHHHHHHHTCEECTTEEEESSSCSSSSEEEESSCBCTTCEEEEEEGGGCBSTTTST----THHHHHHTTGGGC
T ss_pred             CcHHHHHHHHHHHHCCCeeCCceEEEecCCCceEEEEECCCCCCCCEEEEeCcHHhcChhhhh----HHHHHHHhhhhhc
Confidence            345789999999999999985 89887655689999999999 99999999999999998863    22222211110 1


Q ss_pred             CCChHHHHHHHHHHHhhcCCCCcHHHHhhcCC--CCCCCCCCCHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008178           82 EVDDRFLMILFLTVERLRKNSSWKPYLDMLPT--TFGNPLWFTDDELL-ELKGTTLYRATELQKQNLLTLYDDKVKDLVK  158 (575)
Q Consensus        82 ~l~~~~~LaL~Ll~E~~~~~S~w~pYl~~LP~--~~~~pl~ws~~el~-~L~gt~l~~~~~~~~~~~~~~y~~~~~~l~~  158 (575)
                      .+++|..|+++||+|+.+.+|+|+|||++||+  .+++|+||+++|+. .|+||++...+..+++.++++|..++.+++.
T Consensus        94 ~~~~~~~L~l~Ll~E~~g~~S~W~pYl~~LP~~~~~~~Pl~Ws~eEl~elL~gt~l~~~~~~~~~~i~~~y~~~~~~~~~  173 (449)
T 3qxy_A           94 SQSGWVPLLLALLHELQAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQSIVLPFME  173 (449)
T ss_dssp             CSSSCHHHHHHHHHHHHCTTCTTHHHHTTSCCGGGCCCGGGSCHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHhCCCCchHHHHHhCCCccCCCCccccCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999998899999999999999  89999999999995 7999999999999999999999998788888


Q ss_pred             HhhccCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccccccccccCcCcccccccccccchhhh
Q 008178          159 KLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNEA  238 (575)
Q Consensus       159 ~~~~~~~~~~~~~t~~~f~WA~s~V~SRaf~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  238 (575)
                      ..+..+  ....+|++.|+||+++|+||+|+++.+..      .            ++                      
T Consensus       174 ~~p~~f--~~~~~t~e~f~wA~~~v~SRsf~~~~~~~------~------------~~----------------------  211 (449)
T 3qxy_A          174 AHPDLF--SLRVRSLELYHQLVALVMAYSFQEPLEEE------E------------DE----------------------  211 (449)
T ss_dssp             HCTTTS--CGGGCCHHHHHHHHHHHHHHCBCCCCC---------------------------------------------
T ss_pred             hCcccc--CcccCcHHHHHHHHHHHHHHhcccccCcc------c------------cc----------------------
Confidence            777654  23568999999999999999999875321      0            00                      


Q ss_pred             hhhccccCCCccccccCCCCccccceecchhcccCCCCCCCceEEEcCCCcccccCcceeEEEeecccCCCCCeEEeccC
Q 008178          239 QRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYG  318 (575)
Q Consensus       239 ~~~~~~~~g~~~~~~~~~~e~~~~~~LVPl~DmlNH~~~~~~~~~~d~~g~~~~~~~s~~l~~~a~~~i~~GeEI~isYG  318 (575)
                             .          +.  ...+|||++||+||++.+++.+.++.+          ++.+++.++|++||||||+||
T Consensus       212 -------~----------~~--~~~~LvP~~D~~NH~~~~~~~~~~~~~----------~~~~~a~~~i~~Geei~~~YG  262 (449)
T 3qxy_A          212 -------K----------EP--NSPVMVPAADILNHLANHNANLEYSAN----------CLRMVATQPIPKGHEIFNTYG  262 (449)
T ss_dssp             -------C----------CC--CCCBBCTTGGGCEECSSCSEEEEECSS----------EEEEEESSCBCTTCEEEECCS
T ss_pred             -------c----------cC--CceeEeecHHHhcCCCCCCeEEEEeCC----------eEEEEECCCcCCCchhhccCC
Confidence                   0          00  147999999999999999999988742          478889999999999999999


Q ss_pred             CCChHHHHHhCCcccC--CCCCceEEEeccccccC----------CCC-ChhHHHHHHHHHhhhhhhcCcchhhhccccc
Q 008178          319 NKGNEELLYLYGFVID--NNPDDYLMIHYPAEAIH----------SIP-LSDSKALLLEEQKAQLRCLLPKSLLEHGFFA  385 (575)
Q Consensus       319 ~~~N~eLL~~YGFv~~--~Np~D~v~i~l~~~~~~----------~~~-~~~~k~~ll~~~~~~~~~~~p~~l~~~~~~~  385 (575)
                      +++|++||++||||++  +||+|+|.|.+.  .+.          .++ ++..|.++|+.+|..         .+.|.| 
T Consensus       263 ~~~n~~ll~~YGF~~~~~~N~~D~~~l~~~--~~~~~~l~~~~~~~d~~~~~~k~~~L~~~~~~---------~~~~~f-  330 (449)
T 3qxy_A          263 QMANWQLIHMYGFVEPYPDNTDDTADIQMV--TVREAALQGTKTEAERHLVYERWDFLCKLEMV---------GEEGAF-  330 (449)
T ss_dssp             SCCHHHHHHHHSCCCCTTSCTTCEEEEEHH--HHHHHHHHTCCSHHHHHHHHHHHHHHHHTTSC---------CTTCEE-
T ss_pred             CCCHHHHHHhCCCCCCCCCCCCcEEEEech--hhHHHHhhcccccchhHHHHHHHHHHHhCCCC---------CCCCce-
Confidence            9999999999999998  999999998753  221          111 234555555544320         000111 


Q ss_pred             CCCCCCCCCCccchhhhhcccccCccccccccccCCCCChhHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCCCChHHH
Q 008178          386 AGHPKDGNNDNKLEVDRISSFSWSGQRRMPSYLNKLVFPENFLTALRTIAMQEDEISKVSSLLEELVGSGGERQPSDAEV  465 (575)
Q Consensus       386 ~~t~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~ll~~lR~l~~~~~el~~~~~~l~~~~~~~~~~~p~~~~~  465 (575)
                        +                 ++++          +...+.+|+++||+++|+++||+.++....+.. ......|...  
T Consensus       331 --~-----------------l~~~----------~~~~~~~ll~~LR~l~~~~~e~~~~~~~~~~~~-~~~~~~sl~~--  378 (449)
T 3qxy_A          331 --V-----------------IGRE----------EVLTEEELTTTLKVLCMPAEEFRELKDQDGGGD-DKREEGSLTI--  378 (449)
T ss_dssp             --E-----------------EESS----------BBSSHHHHHHHHHHHHSCHHHHHHHHHC-------CCCCCCCBT--
T ss_pred             --E-----------------ecCC----------CCCCCHHHHHHHHHHhCCHHHHHHHHhccCccc-ccchhccccc--
Confidence              0                 1111          122356899999999999999988865221100 0000011100  


Q ss_pred             HHHHHhhcCCcchH-HHHHHHHHHHHHhhhccCCChhhhHHHHHHhccccccccccccCCCCccccccccccccccccee
Q 008178          466 RAAVWETCGDSGAL-QLLVDLLQAKLTELEESSGTEDYDSELLLKSCITESQGQHASCENNSSEETNGWTQHKMSRKTWS  544 (575)
Q Consensus       466 ~~~~~~~~~~~~~l-~~L~~~l~~~~~~L~~y~tt~e~D~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~r~  544 (575)
                      +    ..|+...++ ++|.+.++.+|.   +|+||+|+|++||++.+.                      ...++.|+|+
T Consensus       379 ~----~~~~~~~~~~~~l~~~~~~~L~---~Y~TtleeD~~lL~~~~~----------------------~~~l~~r~~~  429 (449)
T 3qxy_A          379 T----NIPKLKASWRQLLQNSVLLTLQ---TYATDLKTDQGLLSNKEV----------------------YAKLSWREQQ  429 (449)
T ss_dssp             T----TGGGSCHHHHHHHHHHHHHHHT---TSSSCHHHHHHHHHCHHH----------------------HHHSCHHHHH
T ss_pred             c----ccccccHHHHHHHHHHHHHHHh---hCCCcHHHHHHHHhCccc----------------------ccccCHHHHH
Confidence            0    012233455 778888888776   999999999999985310                      0158899999


Q ss_pred             eEEEEccHHHHHHHHHHH
Q 008178          545 SIVYRRGQKELALLFLKE  562 (575)
Q Consensus       545 Ai~~R~geK~IL~~~l~~  562 (575)
                      ||+||+|||+||+++|+.
T Consensus       430 Av~vR~gEK~IL~~~l~~  447 (449)
T 3qxy_A          430 ALQVRYGQKMILHQLLEL  447 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999999874

PyMOL of 3qxy

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		575
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	1e-30
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	3e-08

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  118 bits (296), Expect = 1e-30
 Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 12/234 (5%)

Query: 8   KLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFSDG-VLLVVPLDLAITPMRVLQ 66
            ++ F +WLQ   V      +K S  ++G G+ +  + S   V+L VP  L I P  V  
Sbjct: 4   AVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAA 63

Query: 67  DPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFTDDEL 126
             + G  C       E+     +ILFL  ER R++S WK Y  +LP    + ++++++EL
Sbjct: 64  SEI-GRVCS------ELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEEL 116

Query: 127 LELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLDGDSESEVSFEDFLWANSIFWTR 186
            EL+G+ L + T   K+ +        ++++     L  D    V+ +DF WA  I  +R
Sbjct: 117 QELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPD---PVTLDDFFWAFGILRSR 173

Query: 187 ALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNEAQR 240
           A +     +        DL  + +   + + + +      L +       ++  
Sbjct: 174 AFSRLRNENL-VVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPL 226

PyMOL of d2h2ja2

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		575
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	100.0
d2h2ja1		176	RuBisCo LSMT C-terminal, substrate-binding domain	99.53
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	97.9
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	97.14
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	96.56
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	96.35
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	84.51

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=4.6e-43  Score=349.88  Aligned_cols=255  Identities=26%  Similarity=0.396  Sum_probs=206.5

Q ss_pred             hCHHHHHHHHHHCCccccCeeEEeecCCceeEEEEcCCC-CCCeEEEeCcccccChhhhccCCCCChhhhhhhcCCCCCh
Q 008178            7 AKLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEF-SDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFEDGEVDD   85 (575)
Q Consensus         7 ~~~~~fl~Wl~~~G~~~~~v~i~~~~~~~GrGl~A~~dI-~ge~l~~IP~~~~ls~~~~~~~~~~g~~~~~~l~~~~l~~   85 (575)
                      .+++.|++|++++|+.++++.+.....+.||||||+++| +|++|++||..++||..++..+. .++    .+.  ...+
T Consensus         3 ~~~~~~~~W~~~~g~~~~~~~~~~~~~~~GrGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~~-~~~----~~~--~~~~   75 (261)
T d2h2ja2           3 PAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASE-IGR----VCS--ELKP   75 (261)
T ss_dssp             HHHHHHHHHHHTTTSSCSSCCCEEEEETTEEEEECSSCCCTTCEEEEEEGGGCCSHHHHHTSG-GGT----TTT--TSCH
T ss_pred             hHHHHHHHHHHHCCCccCCceEeecCCCceeEEEECCcCCCCCEEEEeChHHhccHHHhhhhH-HHH----HHh--hcCc
Confidence            457889999999999999888776655689999999999 99999999999999998876542 222    222  4568


Q ss_pred             HHHHHHHHHHHhhcCCCCcHHHHhhcCCCCCCCCCCCHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008178           86 RFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLVKKLLVLDG  165 (575)
Q Consensus        86 ~~~LaL~Ll~E~~~~~S~w~pYl~~LP~~~~~pl~ws~~el~~L~gt~l~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~  165 (575)
                      +..+++++++|+....|.|+||++.||+.+++|++|+..+++.|+++.+...+...++.++..|......++..+..   
T Consensus        76 ~~~l~~~l~~e~~~~~s~~~~y~~~lp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  152 (261)
T d2h2ja2          76 WLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKR---  152 (261)
T ss_dssp             HHHHHHHHHHHHHCTTCTTHHHHTTSCSCCSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT---
T ss_pred             HHHHHHHHHHHHhCCCCchhhhhhccccccCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---
Confidence            89999999999988999999999999999999999999999999999999988888888988888766554433332   


Q ss_pred             CCCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccccccccccccccccCcCcccccccccccchhhhhhhcccc
Q 008178          166 DSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNEAQRVNSQV  245 (575)
Q Consensus       166 ~~~~~~t~~~f~WA~s~V~SRaf~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  245 (575)
                      .....++++.|.||+++|.||+|.++..                                                    
T Consensus       153 ~~~~~~~~~~~~~a~~~v~sr~~~~~~~----------------------------------------------------  180 (261)
T d2h2ja2         153 LFPDPVTLDDFFWAFGILRSRAFSRLRN----------------------------------------------------  180 (261)
T ss_dssp             TCCSCCCHHHHHHHHHHHHHHSBCCC------------------------------------------------------
T ss_pred             hccCccCHHHHHHHHHHhhccccccccc----------------------------------------------------
Confidence            2345789999999999999999976421                                                    


Q ss_pred             CCCccccccCCCCccccceecchhcccCCCCCCCceEEEcCCCccccc-CcceeEEEeecccCCCCCeEEeccCC-CChH
Q 008178          246 NGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGV-PFSMYLLSVERSSFHSEKEISISYGN-KGNE  323 (575)
Q Consensus       246 ~g~~~~~~~~~~e~~~~~~LVPl~DmlNH~~~~~~~~~~d~~g~~~~~-~~s~~l~~~a~~~i~~GeEI~isYG~-~~N~  323 (575)
                                     ...+|+|++||+||+..+|+.+.++......+. ....+++++|.|+|++||||||+||+ ++|+
T Consensus       181 ---------------~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~isYG~~~~n~  245 (261)
T d2h2ja2         181 ---------------ENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNA  245 (261)
T ss_dssp             ----------------CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCEECSCSSCCHH
T ss_pred             ---------------ccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCEEEEecCCCCCHH
Confidence                           025899999999999999987654321100000 01126889999999999999999995 8999


Q ss_pred             HHHHhCCcccCC-CCC
Q 008178          324 ELLYLYGFVIDN-NPD  338 (575)
Q Consensus       324 eLL~~YGFv~~~-Np~  338 (575)
                      +||.+||||+++ |||
T Consensus       246 ~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         246 ELALDYGFIEPNENRH  261 (261)
T ss_dssp             HHHHHSSCCCSCGGGC
T ss_pred             HHHHhCCCCCCCCCCC
Confidence            999999999885 987

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure