Citrus Sinensis ID: 008184

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
ccccccccccHHHHcccccEEEEcccccEEEEEcccccccccccEEEEEEccccccccccccHHcccccccccHHHHccccccccccccHHHHHccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccEEEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHcccEEEEEEEccccEEEEEEccccccccccEEEcccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcEEccccccccEEEEEEEccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHcccHHHHHHHHccEEEEcccccccccHHHHHHHHHHHccccccccEEEcccccccccccEEEcEEEEccccccccccccHHHHHHHccccccccccccccccccEEEEEccc
ccccccccccHHHHHHcccEEEEcccccEEEEEcccccccccccEEEEEEccccccccHHHHHHHHccccccHHcccccccHHHHccccccccHHHccccccccccccccccccHHccEEEEEccccccccccccccccccccccccccccccccccHHHHHccccccEEEEccccccEEEccccccHHHHHHHHHHHHHHHHHHHccccHHHHccccEEEEccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEcccccccHHHHHHHccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHcccccccEEEccccccccHHcccHHHHccccccccccccccccccccccHcEcccccEEEEccccccccccccccHcccccHcccccccccccHHHHHHHHHHHcccHHHHHHHHHcEEEcccccccccHHHHHHHHHHHHcccccEEEEEccccccccccEEEEEcHHHHHHHHHHHHHHEcHHHHHHccccEEEcccccccHHHHHHHHHHHcc
mdylktvvpsqliaergsnlvvinpgsaniriglaqhdtplniphciarrtsqvpkrNVVDQIASLmkipfldeevannsfprkmgrvdafnqqnsrkdvafswtnvyekepmpstalessssmnhgiikesmgqhrntdikELNSSERKFREFicgeealrvsptepycihrpirrghlnisqhypmQQVLEDLYAIWDWILTeklhiprserNLYSAILVlpesfdnrEIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVedgvalpntektlpfggedisrCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHsyedgmppgshktrlialnvppmglfypkllvpdvypppprswfndyedmledtwhtdfprrsdisdnfypginvglpmwesypvlttkpkkeekigLAEAVTSSILSTGRIDLQRKLFCSIQLIGgvaltgglipaveervlhaipsneaIDMVEVLQsrtnptyvswkggavLGILDFGRDAWIHREDwirngihigsgrkykdsYFLQAQAMCYINS
mdylktvvpsqliaergsNLVVINPGSANIRIGLAQHDTPLNIphciarrtsqvpkRNVVDQIASLMKIPFLDEEVANNSFPRKMGrvdafnqqnsrkdVAFSWTNVYEKEPMPSTALESSSSMNHGIIKesmgqhrntdIKELNSSERKFREFIcgeealrvsptepyCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIrngihigsgrkYKDSYFLQAQAMCYINS
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
*****TVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVA**********************VAFSWTNV*******************************************FREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYI**
******V*******ERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRT****************************************************W**VY*************************************SSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSD*************************PKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPS***********SRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKE***********SMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
*DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSF*****RVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVY******WFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
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MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query574 2.2.26 [Sep-21-2011]
Q9LSW2596 Actin-related protein 9 O yes no 0.977 0.941 0.607 0.0
A2XQX0586 Actin-related protein 9 O N/A no 0.975 0.955 0.601 0.0
Q0JF03586 Actin-related protein 9 O yes no 0.975 0.955 0.601 0.0
D2I1E3624 Actin-related protein 8 O yes no 0.905 0.833 0.295 2e-54
Q1LZF2624 Actin-related protein 8 O yes no 0.905 0.833 0.288 4e-53
P59679623 Actin-related protein 8 O yes no 0.879 0.810 0.262 6e-51
Q8R2S9624 Actin-related protein 8 O yes no 0.609 0.560 0.343 1e-45
Q9H981624 Actin-related protein 8 O yes no 0.609 0.560 0.341 2e-45
Q5RDA1624 Actin-related protein 8 O yes no 0.609 0.560 0.341 1e-44
B5X2S3632 Actin-related protein 8 O N/A no 0.613 0.556 0.329 4e-44
>sp|Q9LSW2|ARP9_ARATH Actin-related protein 9 OS=Arabidopsis thaliana GN=ARP9 PE=2 SV=1 Back     alignment and function desciption
 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/593 (60%), Positives = 446/593 (75%), Gaps = 32/593 (5%)

Query: 2   DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVD 61
           DYLKTV P+Q+++ERG+NLVVIN GSAN+R+GLA  + P N+P+CIAR  +Q  K  VVD
Sbjct: 14  DYLKTVAPTQILSERGANLVVINLGSANVRVGLAMDEKPFNVPNCIARYITQSGKPTVVD 73

Query: 62  QI--------------------ASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS-RKDV 100
           Q+                    ASL+KI FLDE  ++ S  RKMGR+D +NQ ++ +KD 
Sbjct: 74  QMLNTEVTTNQHVDRERAYNSAASLLKILFLDESSSSGSASRKMGRIDGYNQASTIKKDS 133

Query: 101 AFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEA 160
            F+WT+VYE E + S A  + +S + G    S      TD K+ + S+RK+R+ I GEEA
Sbjct: 134 VFTWTDVYEDEKI-SLASPAETSPDKGDASASEAVPDVTDSKDTSESKRKYRKMIFGEEA 192

Query: 161 LRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAI 220
           L++SP EPYC++ PIRRGH N+S HY  Q+V EDL AI DWIL EKLHI   ER  + A+
Sbjct: 193 LKISPKEPYCLYHPIRRGHFNVSPHYSAQRVCEDLTAILDWILLEKLHITHKERFSFHAV 252

Query: 221 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVIC 280
           +V+PE+FD REIKEML+IVL +L F SAVVHQEGL+AVFGNGL+TAC+VN+GAQ ++V+C
Sbjct: 253 IVVPETFDTREIKEMLTIVLGELYFNSAVVHQEGLSAVFGNGLTTACIVNIGAQTSTVVC 312

Query: 281 VEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYC 340
           VEDGV+LPNTEK LPFGGEDI RCLLW QRH+Q WPQI TD+L K +D+LMLN++KES+C
Sbjct: 313 VEDGVSLPNTEKILPFGGEDICRCLLWIQRHYQKWPQINTDVLAKPIDMLMLNQLKESFC 372

Query: 341 EIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFND 400
           EI+ GE++ VA VHSYE+GMP   HKT L +LNVPPMGLFYP LLVP+++P PPR WF D
Sbjct: 373 EIRAGELETVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPRQWFQD 432

Query: 401 YEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 460
           YE+MLEDTW+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+TSSI
Sbjct: 433 YENMLEDTWNMDFGG----------GGNMGLPMWDSFAFSPSKPKKEEKIGLAEAITSSI 482

Query: 461 LSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTY 520
           LS GRIDL+RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAID V+VL SRT P +
Sbjct: 483 LSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQF 542

Query: 521 VSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN 573
           V+WKGGA+LGILDFGR+AWI R  W+ NG++ G  +KYKDSY LQ QAM +IN
Sbjct: 543 VTWKGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595

Arabidopsis thaliana (taxid: 3702)
>sp|A2XQX0|ARP9_ORYSI Actin-related protein 9 OS=Oryza sativa subsp. indica GN=ARP9 PE=2 SV=2 Back     alignment and function description
>sp|Q0JF03|ARP9_ORYSJ Actin-related protein 9 OS=Oryza sativa subsp. japonica GN=ARP9 PE=2 SV=1 Back     alignment and function description
>sp|D2I1E3|ARP8_AILME Actin-related protein 8 OS=Ailuropoda melanoleuca GN=ACTR8 PE=3 SV=1 Back     alignment and function description
>sp|Q1LZF2|ARP8_BOVIN Actin-related protein 8 OS=Bos taurus GN=ACTR8 PE=2 SV=1 Back     alignment and function description
>sp|P59679|ARP8_DANRE Actin-related protein 8 OS=Danio rerio GN=actr8 PE=2 SV=1 Back     alignment and function description
>sp|Q8R2S9|ARP8_MOUSE Actin-related protein 8 OS=Mus musculus GN=Actr8 PE=2 SV=1 Back     alignment and function description
>sp|Q9H981|ARP8_HUMAN Actin-related protein 8 OS=Homo sapiens GN=ACTR8 PE=1 SV=2 Back     alignment and function description
>sp|Q5RDA1|ARP8_PONAB Actin-related protein 8 OS=Pongo abelii GN=ACTR8 PE=2 SV=1 Back     alignment and function description
>sp|B5X2S3|ARP8_SALSA Actin-related protein 8 OS=Salmo salar GN=actr8 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
255576846589 conserved hypothetical protein [Ricinus 0.991 0.966 0.787 0.0
296083596632 unnamed protein product [Vitis vinifera] 0.996 0.905 0.773 0.0
225433003602 PREDICTED: actin-related protein 9-like 0.994 0.948 0.773 0.0
449432582599 PREDICTED: actin-related protein 9-like 0.993 0.951 0.752 0.0
356533797591 PREDICTED: actin-related protein 9-like 0.994 0.966 0.722 0.0
356576460589 PREDICTED: actin-related protein 9-like 0.991 0.966 0.715 0.0
449526595512 PREDICTED: actin-related protein 9-like, 0.853 0.957 0.75 0.0
224107879480 actin related protein [Populus trichocar 0.801 0.958 0.749 0.0
297795073596 hypothetical protein ARALYDRAFT_494650 [ 0.977 0.941 0.615 0.0
242072470590 hypothetical protein SORBIDRAFT_06g00301 0.979 0.952 0.608 0.0
>gi|255576846|ref|XP_002529309.1| conserved hypothetical protein [Ricinus communis] gi|223531233|gb|EEF33078.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/594 (78%), Positives = 520/594 (87%), Gaps = 25/594 (4%)

Query: 1   MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVV 60
           MDYLKTVVPSQL+AERGSNLVVINPGSA++RIGLA  DTP N+PHCIAR +SQ PK NV 
Sbjct: 1   MDYLKTVVPSQLVAERGSNLVVINPGSASVRIGLAPQDTPFNVPHCIARYSSQSPKLNVR 60

Query: 61  DQ--------------------IASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDV 100
           DQ                    IAS +KIPFLDEEVANNSFPRK+GRVD FN Q+ RKDV
Sbjct: 61  DQMLNSQVTTAQHMEREKAYDIIASYLKIPFLDEEVANNSFPRKIGRVDGFNPQSGRKDV 120

Query: 101 AFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEA 160
           AF+WTNVYE++   S++L S    N G I  S+ +  +TD K    S  K+R FICGEEA
Sbjct: 121 AFTWTNVYEQDT--SSSLASERPTNEGQIGGSLEKLESTDAK--GPSTSKYRGFICGEEA 176

Query: 161 LRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAI 220
           L++SPTEPYC+HRPIRRGHLNISQHYPMQQVLEDL+AIWDWIL EKLHIP+SERN+Y+AI
Sbjct: 177 LQISPTEPYCLHRPIRRGHLNISQHYPMQQVLEDLHAIWDWILIEKLHIPQSERNMYAAI 236

Query: 221 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVIC 280
           LVLPE+FDNREIKEM+SIVLRDLRF+SAVVHQEGLAAVFGNGLSTACV+N+GAQVTSVIC
Sbjct: 237 LVLPETFDNREIKEMISIVLRDLRFSSAVVHQEGLAAVFGNGLSTACVINIGAQVTSVIC 296

Query: 281 VEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYC 340
           +EDGVALPNTEKTLPFGGED+SRCLLWTQRHHQTWPQIRTDILTK +DLLMLNR++ESYC
Sbjct: 297 IEDGVALPNTEKTLPFGGEDLSRCLLWTQRHHQTWPQIRTDILTKPLDLLMLNRLRESYC 356

Query: 341 EIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFND 400
           EIKEGE+DAVAVV SYEDGMP GSHKTRL ALNVPPMGLFYP LLVPDVYPPPPRSWF+D
Sbjct: 357 EIKEGEVDAVAVVQSYEDGMPAGSHKTRLNALNVPPMGLFYPMLLVPDVYPPPPRSWFHD 416

Query: 401 YEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 460
           YEDMLEDTWH ++PRR D+SD  +P  + GLPMW+SYPV  +KPKKEEK+GLAEA+TSSI
Sbjct: 417 YEDMLEDTWHVEYPRRPDMSDGLFPAFS-GLPMWDSYPVFASKPKKEEKVGLAEAITSSI 475

Query: 461 LSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTY 520
           LSTGRIDL+RKLFCSIQLIGGVALT GLIP VE+RVLHAIPSNE ID VEVLQSR NPT+
Sbjct: 476 LSTGRIDLKRKLFCSIQLIGGVALTPGLIPVVEDRVLHAIPSNEVIDTVEVLQSRINPTF 535

Query: 521 VSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS 574
           V+WKGGA+LG+LDFGRDAWIHREDWIRNGIHIGSGRKYKDSY+LQAQAMCYINS
Sbjct: 536 VTWKGGAILGVLDFGRDAWIHREDWIRNGIHIGSGRKYKDSYYLQAQAMCYINS 589

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296083596|emb|CBI23585.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433003|ref|XP_002280839.1| PREDICTED: actin-related protein 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432582|ref|XP_004134078.1| PREDICTED: actin-related protein 9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356533797|ref|XP_003535445.1| PREDICTED: actin-related protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356576460|ref|XP_003556349.1| PREDICTED: actin-related protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|449526595|ref|XP_004170299.1| PREDICTED: actin-related protein 9-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224107879|ref|XP_002314638.1| actin related protein [Populus trichocarpa] gi|222863678|gb|EEF00809.1| actin related protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297795073|ref|XP_002865421.1| hypothetical protein ARALYDRAFT_494650 [Arabidopsis lyrata subsp. lyrata] gi|297311256|gb|EFH41680.1| hypothetical protein ARALYDRAFT_494650 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|242072470|ref|XP_002446171.1| hypothetical protein SORBIDRAFT_06g003010 [Sorghum bicolor] gi|241937354|gb|EES10499.1| hypothetical protein SORBIDRAFT_06g003010 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
TAIR|locus:2176516596 ARP9 "actin-related protein 9" 0.891 0.859 0.619 5.4e-195
UNIPROTKB|F1NXV7621 ACTR8 "Uncharacterized protein 0.616 0.570 0.347 8.8e-61
UNIPROTKB|F1SH80624 ACTR8 "Uncharacterized protein 0.616 0.567 0.351 4.8e-60
UNIPROTKB|Q1LZF2624 ACTR8 "Actin-related protein 8 0.616 0.567 0.346 4.2e-59
MGI|MGI:1860775624 Actr8 "ARP8 actin-related prot 0.616 0.567 0.343 4.2e-59
UNIPROTKB|Q9H981624 ACTR8 "Actin-related protein 8 0.616 0.567 0.341 6.9e-59
ZFIN|ZDB-GENE-030131-5065623 actr8 "ARP8 actin-related prot 0.623 0.574 0.313 9.9e-56
POMBASE|SPAC664.02c662 arp8 "actin-like protein, Ino8 0.665 0.577 0.296 5.1e-43
UNIPROTKB|Q0IEG8562 Arp8 "Actin-related protein 8" 0.397 0.405 0.330 8.1e-41
FB|FBgn0030877607 Arp8 "Actin-related protein 8" 0.301 0.285 0.323 4.2e-35
TAIR|locus:2176516 ARP9 "actin-related protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1703 (604.5 bits), Expect = 5.4e-195, Sum P(2) = 5.4e-195
 Identities = 325/525 (61%), Positives = 402/525 (76%)

Query:    51 TSQ-VPKRNVVDQIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS-RKDVAFSWTNVY 108
             T+Q V +    +  ASL+KI FLDE  ++ S  RKMGR+D +NQ ++ +KD  F+WT+VY
Sbjct:    82 TNQHVDRERAYNSAASLLKILFLDESSSSGSASRKMGRIDGYNQASTIKKDSVFTWTDVY 141

Query:   109 EKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEP 168
             E E + S A  + +S + G    S      TD K+ + S+RK+R+ I GEEAL++SP EP
Sbjct:   142 EDEKI-SLASPAETSPDKGDASASEAVPDVTDSKDTSESKRKYRKMIFGEEALKISPKEP 200

Query:   169 YCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFD 228
             YC++ PIRRGH N+S HY  Q+V EDL AI DWIL EKLHI   ER  + A++V+PE+FD
Sbjct:   201 YCLYHPIRRGHFNVSPHYSAQRVCEDLTAILDWILLEKLHITHKERFSFHAVIVVPETFD 260

Query:   229 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALP 288
              REIKEML+IVL +L F SAVVHQEGL+AVFGNGL+TAC+VN+GAQ ++V+CVEDGV+LP
Sbjct:   261 TREIKEMLTIVLGELYFNSAVVHQEGLSAVFGNGLTTACIVNIGAQTSTVVCVEDGVSLP 320

Query:   289 NTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEID 348
             NTEK LPFGGEDI RCLLW QRH+Q WPQI TD+L K +D+LMLN++KES+CEI+ GE++
Sbjct:   321 NTEKILPFGGEDICRCLLWIQRHYQKWPQINTDVLAKPIDMLMLNQLKESFCEIRAGELE 380

Query:   349 AVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDT 408
              VA VHSYE+GMP   HKT L +LNVPPMGLFYP LLVP+++P PPR WF DYE+MLEDT
Sbjct:   381 TVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPRQWFQDYENMLEDT 440

Query:   409 WHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDL 468
             W+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+TSSILS GRIDL
Sbjct:   441 WNMDFGG----------GGNMGLPMWDSFAFSPSKPKKEEKIGLAEAITSSILSAGRIDL 490

Query:   469 QRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLQSRTNPTYVSWKGGAV 528
             +RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAID V+VL SRT P +V+WKGGA+
Sbjct:   491 RRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAI 550

Query:   529 LGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN 573
             LGILDFGR+AWI R  W+ NG++ G  +KYKDSY LQ QAM +IN
Sbjct:   551 LGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595
GO:0005737 "cytoplasm" evidence=ISM
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
UNIPROTKB|F1NXV7 ACTR8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH80 ACTR8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q1LZF2 ACTR8 "Actin-related protein 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1860775 Actr8 "ARP8 actin-related protein 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H981 ACTR8 "Actin-related protein 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5065 actr8 "ARP8 actin-related protein 8 homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPAC664.02c arp8 "actin-like protein, Ino80 complex subunit Arp8" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IEG8 Arp8 "Actin-related protein 8" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
FB|FBgn0030877 Arp8 "Actin-related protein 8" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LSW2ARP9_ARATHNo assigned EC number0.60700.97730.9412yesno
Q0JF03ARP9_ORYSJNo assigned EC number0.60160.97560.9556yesno
A2XQX0ARP9_ORYSINo assigned EC number0.60160.97560.9556N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020181001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (602 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00018458001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (725 aa)
      • 0.436

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 4e-18
pfam00022367 pfam00022, Actin, Actin 2e-16
smart00268373 smart00268, ACTIN, Actin 2e-12
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 5e-06
smart00268373 smart00268, ACTIN, Actin 4e-05
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 0.001
pfam00022367 pfam00022, Actin, Actin 0.002
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information 
 Score = 86.7 bits (215), Expect = 4e-18
 Identities = 86/431 (19%), Positives = 148/431 (34%), Gaps = 59/431 (13%)

Query: 137 RNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLY 196
           R  D   +     +   ++ G EA          +  PI  G   I  ++   +      
Sbjct: 38  RRRDEDSVMEDTEEKDTYV-GNEAQNDRDNSLLELRYPIENG---IILNWDAME------ 87

Query: 197 AIWDWILTEKLHIPRSERNLYSAILVLPESFDN-REIKE-MLSIVLRDLRFASAVVHQEG 254
            IWD+    K          +   L+L E   N    +E +  ++   L   +  +  + 
Sbjct: 88  QIWDYTFFNKGD-LLPSPEEHP--LLLTEPPLNPPSNREKITELLFETLNVPALYLAIQA 144

Query: 255 LAAVFGNGLS--TACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISR---CLLWTQ 309
           + +++ +G S  T  V++ G  VT VI V DG+ LP   K +  GG DI+     LL  +
Sbjct: 145 VLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLL--R 202

Query: 310 RHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEI----DAVAVVHSYEDGMPPGSH 365
             +                  ++N IKE  CE  +       DA       E+   P   
Sbjct: 203 EKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEK--PAEK 260

Query: 366 KTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDF----------PR 415
            T           +      +PD             E    +     F            
Sbjct: 261 STESTFQLSKETSIAKESKELPD-----------GEEIEFGN--EERFKAPEILFKPELP 307

Query: 416 RSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCS 475
            S + +      +    + E+Y +  T    +   GL E V  SI      D+++ L+ +
Sbjct: 308 ISGLEEAGKIDESKQELVAENYEISPTNLGNDI-AGLPELVYQSIQI-CDEDVRKSLYSN 365

Query: 476 IQLIGGVALTGGLIPAVEERVLHAIPSNEAIDM-VEVLQSRTNPTYVSWKGGAVLGILDF 534
           I L GG       IP   ER+   + S       V V+    +P+  +W G ++L  L+ 
Sbjct: 366 IVLTGGT----SKIPGFAERLQKELTSLAPSIWKVSVIPPP-DPSLDAWLGASILASLET 420

Query: 535 GRDAWIHREDW 545
            +  WI +E++
Sbjct: 421 FQQLWITKEEY 431

Length = 444
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 574
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 100.0
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.96
PRK13929335 rod-share determining protein MreBH; Provisional 99.95
PRK13928336 rod shape-determining protein Mbl; Provisional 99.93
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.9
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.67
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.45
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.23
CHL00094 621 dnaK heat shock protein 70 99.11
PLN03184 673 chloroplast Hsp70; Provisional 99.08
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.06
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 98.99
TIGR02350595 prok_dnaK chaperone protein DnaK. Members of this 98.98
PRK13411 653 molecular chaperone DnaK; Provisional 98.98
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 98.96
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 98.96
PRK13410 668 molecular chaperone DnaK; Provisional 98.89
PRK09472420 ftsA cell division protein FtsA; Reviewed 98.83
PTZ00009 653 heat shock 70 kDa protein; Provisional 98.82
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 98.77
PRK01433595 hscA chaperone protein HscA; Provisional 98.61
PRK05183 616 hscA chaperone protein HscA; Provisional 98.59
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 98.44
COG0443579 DnaK Molecular chaperone [Posttranslational modifi 98.4
PRK11678450 putative chaperone; Provisional 98.26
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 98.21
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 98.11
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 97.55
PRK13917344 plasmid segregation protein ParM; Provisional 97.39
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 96.89
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 96.47
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 95.78
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 95.53
COG4820277 EutJ Ethanolamine utilization protein, possible ch 95.45
PRK10719475 eutA reactivating factor for ethanolamine ammonia 95.45
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 94.27
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 92.45
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 92.28
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 91.46
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 90.13
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 87.52
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 86.28
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 85.84
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 85.36
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 81.19
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-80  Score=633.08  Aligned_cols=537  Identities=39%  Similarity=0.663  Sum_probs=396.6

Q ss_pred             CCcccccCchhhHhhcCCCeEEEcCCCceeeeecCCCCCCCccceeeeeecCCCC-CcchhhHhhhhcCCCCcchhhh--
Q 008184            1 MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVP-KRNVVDQIASLMKIPFLDEEVA--   77 (574)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~iVi~~GS~~lkiG~a~d~~P~~iP~~ia~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--   77 (574)
                      ++|.+.+.++|...+++.++||||+||.|+|||+|.|..|.++||||||++++.. ++....   +.+... ..|+.+  
T Consensus        16 ~p~~~g~ee~q~~e~ed~k~ivih~gsqnlrig~a~d~np~tv~~~iar~~rap~sdr~~~~---p~l~p~-~~e~~n~~   91 (618)
T KOG0797|consen   16 QPYLKGVEETQILEEEDAKLIVIHLGSQNLRIGLAMDENPFTVPNCIARYIRAPVSDRMLNT---PVLTPQ-HVEERNYN   91 (618)
T ss_pred             CCcccCCCccccccccCCCeeEecCCcchhhccccccCCCcccccceeecccCchhhhcccC---cCCCcc-cccccccc
Confidence            4789999999999999999999999999999999999999999999999987621 000000   000000 001100  


Q ss_pred             -cCCcccccccccchhcccccccccccccccccCCCCCCCccccccccccCCCccccCCCCCCcccccccc-------cc
Q 008184           78 -NNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSS-------ER  149 (574)
Q Consensus        78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~-------~~  149 (574)
                       -..|.+.|    -.++.+    +.....+. +.++.-.|...++.+||+-+++|++|..+.......|.+       +.
T Consensus        92 ~~~ef~~~l----ll~~s~----lss~~~~k-k~ri~v~~~~q~lkn~n~~S~aetvP~ps~~~a~~~wld~e~~~hv~v  162 (618)
T KOG0797|consen   92 SAAEFLKIL----LLDESS----LSSSASRK-KGRIDVYNQAQTLKNDNVASPAETVPDPSASEAVPDWLDSEDTSHVKV  162 (618)
T ss_pred             chhhhhHHH----HHhhhh----hhhHHHhh-cCcccccCchHHhhcccccCccccCCCCCCCcCCCCccccccchHHHH
Confidence             01111100    000111    11111111 234445588899999999999999996542222222221       12


Q ss_pred             CCCceEEccccccCCCCCCceEecceecCeeeec-CCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCC
Q 008184          150 KFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFD  228 (574)
Q Consensus       150 ~~~~~~vG~eal~~~~~~~~~l~~Pi~~G~i~~~-~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~  228 (574)
                      ..++-.+|++|..++   +|.|++||++|.||++ +|+|.|+...|+++||+|++.+.|+|+++...+|++|||+|+.|.
T Consensus       163 ~c~kr~~~ee~n~i~---~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~  239 (618)
T KOG0797|consen  163 KCRKRIFGEEANKIS---PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFD  239 (618)
T ss_pred             HHHHHHhhhhhhcCC---cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhh
Confidence            234556777777764   8999999999999997 778999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCeEEEehhhHHHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHH
Q 008184          229 NREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWT  308 (574)
Q Consensus       229 ~~~~r~~~eilFE~~~~~~v~~~~~svla~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~l  308 (574)
                      ++++++++.++|-+++|.++.++|+++||+||+|.+++||||||+++|+|+||.||.++++++++++|||+|||++|.++
T Consensus       240 r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~l  319 (618)
T KOG0797|consen  240 RRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWL  319 (618)
T ss_pred             HHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCcccccccccccHHHHHHHHHhceeccCCccccccccccccCCCCCC-CceeEee---eecCCCCcCCCCcc
Q 008184          309 QRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLI---ALNVPPMGLFYPKL  384 (574)
Q Consensus       309 L~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~y~~~~p~~-~~k~~~~---~~~~ap~~lf~p~~  384 (574)
                      |++. .|| |.++++...+||.++++|||++|++..++.........+.  .|++ +.+|+|+   +.++|||++|+|.+
T Consensus       320 l~rs-~FP-y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R--~pn~~~~kytfk~~DE~mlAPlaLF~P~l  395 (618)
T KOG0797|consen  320 LRRS-GFP-YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYR--EPNPPTLKYTFKLGDEVMLAPLALFYPNL  395 (618)
T ss_pred             HHhc-CCC-cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhcc--CCCCcceeeeeeccchhhccchhhhhhhh
Confidence            9874 466 5677888899999999999999999976654432222222  3332 3466654   57899999999999


Q ss_pred             cCCCC--------CCCCCCCCCCCccccccCCccccCC------------------CCCCCCCCCCCCCCCCCCCCCCCC
Q 008184          385 LVPDV--------YPPPPRSWFNDYEDMLEDTWHTDFP------------------RRSDISDNFYPGINVGLPMWESYP  438 (574)
Q Consensus       385 ~~~e~--------~~~p~~~~~~d~~d~~~d~~~~~~~------------------er~~~~E~lF~~~~g~~~~~~~~~  438 (574)
                      +..+.        +..|.+.++.|++-.+.+++....+                  -|-..+|..-.+..| ....+.+.
T Consensus       396 f~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg-~t~~d~f~  474 (618)
T KOG0797|consen  396 FVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELG-VTLKDNFA  474 (618)
T ss_pred             hhccccccccccccCCCCcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhc-cccccccC
Confidence            87665        3444444433333222222211110                  011111111100000 00000110


Q ss_pred             cc------------------CCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhC
Q 008184          439 VL------------------TTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI  500 (574)
Q Consensus       439 ~~------------------~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~  500 (574)
                      +.                  -......-..+|.++|..||..|...|.+++||++|+++||+.++|||.+.|++++...+
T Consensus       475 p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~  554 (618)
T KOG0797|consen  475 PLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAI  554 (618)
T ss_pred             CchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccC
Confidence            00                  000000112367888999999987889999999999999999999999999999999888


Q ss_pred             CC-CCCcceEEEcCCC--CCCceeeEeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184          501 PS-NEAIDMVEVLQSR--TNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY  558 (574)
Q Consensus       501 p~-~~~i~~V~v~~~~--~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~  558 (574)
                      |+ ...+..|.|++++  +||++.+||||+|||.|+..+++||++.||..+|.|++..||+
T Consensus       555 pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~  615 (618)
T KOG0797|consen  555 PPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY  615 (618)
T ss_pred             CccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence            87 4457789999876  8999999999999999999999999999999999999999986

>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 1e-46
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 2e-09
4am6_A655 C-terminal Domain Of Actin-related Protein Arp8 Fro 7e-30
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 3e-07
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 3e-07
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 3e-06
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 9e-04
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure 
Iteration: 1

 Score =  184 bits (466), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/389 (34%), Positives = 201/389 (51%), Gaps = 40/389 (10%)
Query: 7   VVPSQLIAERGSN-LVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQIAS 65
           +VP  L  +  SN ++VI+PGS  +RIG A    P +IPH IARR  Q        Q   
Sbjct: 3   LVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQ--------QGQP 54
Query: 66  LMKIPFLDEEVANN--SFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPM-PSTALESSS 122
           L K  +L  E  N   S  ++   +   +Q    K +    +N   + P+ P  A   + 
Sbjct: 55  LYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKM----SNGTRRIPVSPEQARSYNK 110
Query: 123 SMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNI 182
            M   I+    G       K  N+S     E++ GEEAL V+P + Y IH PIRRG LNI
Sbjct: 111 QMRPAILDHCSGN------KWTNTSHHP--EYLVGEEALYVNPLDCYNIHWPIRRGQLNI 162
Query: 183 SQHYP-----MQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLS 237
              +P     +  VL D+  IW   + + L IP  +   Y  IL++P+ ++ + +KE+++
Sbjct: 163 ---HPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVN 219
Query: 238 IVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFG 297
           ++L  + F+  VVHQE + A +G+GLS+ C+V++G Q TSV CVEDGV+  NT   L +G
Sbjct: 220 MILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYG 279
Query: 298 GEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYE 357
           G D+SRC  W  +    +P  R   LT  MD L+L  +KE++C + + +I  +   H ++
Sbjct: 280 GSDVSRCFYWLMQ-RAGFP-YRECQLTNKMDCLLLQHLKETFCHLDQ-DISGLQ-DHEFQ 335
Query: 358 DGMPPGS---HKTRLIALNV-PPMGLFYP 382
              P      ++ RL    +  PM LFYP
Sbjct: 336 IRHPDSPALLYQFRLGDEKLQAPMALFYP 364
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure
>pdb|4AM6|A Chain A, C-terminal Domain Of Actin-related Protein Arp8 From S. Cerevisiae Length = 655 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 5e-20
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 5e-11
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-09
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-04
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 1e-09
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 4e-09
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
 Score = 92.4 bits (229), Expect = 5e-20
 Identities = 74/454 (16%), Positives = 140/454 (30%), Gaps = 92/454 (20%)

Query: 152 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPR 211
           ++    +      P + Y +   I  G         +    +     W W L  +L++  
Sbjct: 63  KKIFSEQSIG--IPRKDYELKPIIENG---------LVIDWDTAQEQWQWALQNELYLNS 111

Query: 212 SERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVN 270
           +        L+    +++ E ++  L ++L  ++F +  +        F  G     VV+
Sbjct: 112 NS---GIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVD 168

Query: 271 MGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL--LWTQR----------------HH 312
           +G    SV  + DG+ L  + +     G+ I+  +      +                  
Sbjct: 169 IGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKK 228

Query: 313 QTWPQIRTDILTKAMDLLMLNRIKESYCEI-----KEGEIDAV--AVVHSYEDGMPPGSH 365
               ++   +   A +       KE+ C I      E     +      S E   P    
Sbjct: 229 TFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIE--SPWNEE 286

Query: 366 KT-----RLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDIS 420
                  R          LF PK          P +W      +++   +   P +    
Sbjct: 287 IVFDNETRYGF----AEELFLPK------EDDIPANWPRSNSGVVKTWRNDYVPLKRTKP 336

Query: 421 DNFYPGINVGLPMWESYPVLTTKPK--------------------------KEEKIGLAE 454
                      P  E      +K                              E IGLA+
Sbjct: 337 SGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLAD 396

Query: 455 AVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERV---LHAIPSNEAIDMVEV 511
            V SSI+S+  +DL+  L  ++ L GG +   GL     +R+   L+ I  +     +  
Sbjct: 397 LVYSSIMSS-DVDLRATLAHNVVLTGGTSSIPGL----SDRLMTELNKILPSLKFR-ILT 450

Query: 512 LQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDW 545
                   Y SW GG++L  L      W+ ++++
Sbjct: 451 TGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEY 484
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.97
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.73
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.7
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.66
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.62
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.55
1yuw_A554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.27
2kho_A605 Heat shock protein 70; molecular chaperone, HSP70, 99.24
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.12
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.04
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 98.97
4b9q_A605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 98.96
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 98.8
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 98.75
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 97.9
3js6_A355 Uncharacterized PARM protein; partition, segregati 97.85
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 97.81
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 97.08
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 96.81
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 85.41
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 83.93
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 83.11
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 80.36
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.2e-93  Score=797.37  Aligned_cols=530  Identities=28%  Similarity=0.463  Sum_probs=373.1

Q ss_pred             cccCchhhHhhcCC-CeEEEcCCCceeeeecCCCCCCCccceeeeeecCCCCCcchhhHh--hhhcCCCCcchhhhcCCc
Q 008184            5 KTVVPSQLIAERGS-NLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQI--ASLMKIPFLDEEVANNSF   81 (574)
Q Consensus         5 ~~~~~~~~~~~~~~-~~iVi~~GS~~lkiG~a~d~~P~~iP~~ia~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   81 (574)
                      .+++|+|+.+..++ ++|||||||++||||||+|..|++||||||||+++.......+..  ......+..+++..    
T Consensus         1 ~p~~~~~~~~~~~~~~iIVIdpGS~~~riG~A~d~~P~~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   76 (593)
T 4fo0_A            1 GPLVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQ----   76 (593)
T ss_dssp             CCCCCGGGTTTSGGGGEEEEECCSSEEEEEETTCSSCEEEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHH----
T ss_pred             CCCCCCccccccCCCCEEEEeCCCCCeEeeecCCCCCCeeeEEEEEECCCCCCCcccccccccccccccchhhhhh----
Confidence            47899999888665 599999999999999999999999999999998763221111000  00000000111100    


Q ss_pred             ccccccccchhcccccccccccccccccCCCCCCCccccccccccCCCccccCCCCCCccccccccccCCCceEEccccc
Q 008184           82 PRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEAL  161 (574)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~n~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~vG~eal  161 (574)
                       ..+        ....+.+...++. ++|++ .+++.+++++||++++||.+++|++..+.    +....+++|||++|+
T Consensus        77 -~~~--------~~~~~~~~~~~~~-~~~r~-~~~s~~~~~~~n~~~~p~~i~~~~~~~~~----~~~~~~~~~vG~~al  141 (593)
T 4fo0_A           77 -NGL--------KMVDQAIWSKKMS-NGTRR-IPVSPEQARSYNKQMRPAILDHCSGNKWT----NTSHHPEYLVGEEAL  141 (593)
T ss_dssp             -HHH--------HHHHHHHHHSCCT-TSCCC-CCCCHHHHHHHHTTCCCEEEESSCSCCCC----CCTTCCSEEETHHHH
T ss_pred             -hhH--------HHHHHHHHHHhhh-ccccc-CCCcHHHhhhhhccCCCcccCCCCccccc----cccccccccccHHHh
Confidence             000        0111122222232 24444 36999999999999999999888655432    223458899999999


Q ss_pred             cCCCCCCceEecceecCeeeec--CCCChhhcHHHHHHHHHHHHhhhcCCCCCCCcccceeeecCCCCChHHHH-HHHHH
Q 008184          162 RVSPTEPYCIHRPIRRGHLNIS--QHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIK-EMLSI  238 (574)
Q Consensus       162 ~~~~~~~~~l~~Pi~~G~i~~~--~~~s~~~~~dd~e~iw~~~~~~~L~i~~~~~~~~~~VLv~e~~~~~~~~r-~~~ei  238 (574)
                      ++.+++.|.|+|||+||.+|++  ++.|++.+|+|||+||+|+|+++|+|++++.+.| +||||+++++++..| +|+|+
T Consensus       142 ~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~-pvlltep~~~~~~~re~~~ei  220 (593)
T 4fo0_A          142 YVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYY-RCILLIPDIYNKQHVKELVNM  220 (593)
T ss_dssp             TSCTTSSEEEECSEETTEECCCSSTTCSHHHHHHHHHHHHHHHHHHTSCCCGGGGGGC-EEEEEECSSCCHHHHHHHHHH
T ss_pred             hcCCcccceEecCcccCccccccCCccchhcCHHHHHHHHHHHHHHhcCCCchhccCC-cEEEEeCCCCCHHHHHHHHHH
Confidence            9987889999999999999986  4559999999999999999999999999886555 677777776666655 69999


Q ss_pred             HHHhcCCCeEEEehhhHHHHhhcCCceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCc
Q 008184          239 VLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQI  318 (574)
Q Consensus       239 lFE~~~~~~v~~~~~svla~ya~G~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~  318 (574)
                      |||+|+||++|++++++||+||+|++||||||||++.|+|+||+||++++++++++++||++||++|.++|+.++.  ++
T Consensus       221 lFE~f~~pa~~~~~~~vla~ya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~--~~  298 (593)
T 4fo0_A          221 ILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGF--PY  298 (593)
T ss_dssp             HHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTC--SC
T ss_pred             HHHhcCCCeEEeechHHHHHHHCCCCceEEEEeCCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCC--Cc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988753  24


Q ss_pred             ccccccccccHHHHHHHHHhceeccCCccccccccccccCCCCCCC-ceeEee---eecCCCCcCCCCcccCCCCCCC--
Q 008184          319 RTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGS-HKTRLI---ALNVPPMGLFYPKLLVPDVYPP--  392 (574)
Q Consensus       319 ~~~~l~~~~d~~l~e~lKe~~c~v~~~~~~~~~~~~~y~~~~p~~~-~k~~~~---~~~~ap~~lf~p~~~~~e~~~~--  392 (574)
                      .+.++....|++++++|||++|||+.+.......  .+....|++. .++.++   +...+|+++|+|.++..+....  
T Consensus       299 ~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~~--~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~  376 (593)
T 4fo0_A          299 RECQLTNKMDCLLLQHLKETFCHLDQDISGLQDH--EFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTT  376 (593)
T ss_dssp             TTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEEE--EEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEE
T ss_pred             cccccccchhHHHHHHHHHHhcccccchHHhhhh--hhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccch
Confidence            4556777889999999999999999753322111  1111245443 233333   4567899999998775332100  


Q ss_pred             --------CCCCC----C---------------CCccccccCCccccCC-CCCCCCCCCCCCCCC-CCCCC-------CC
Q 008184          393 --------PPRSW----F---------------NDYEDMLEDTWHTDFP-RRSDISDNFYPGINV-GLPMW-------ES  436 (574)
Q Consensus       393 --------p~~~~----~---------------~d~~d~~~d~~~~~~~-er~~~~E~lF~~~~g-~~~~~-------~~  436 (574)
                              |....    .               ......++++..+.++ +|+.++|.+|.+... .....       +.
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~  456 (593)
T 4fo0_A          377 LQHRSQGDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDS  456 (593)
T ss_dssp             ECC-----------------------------------------------------------------------------
T ss_pred             hhhhcccCcccchhhhhhhhcccchhhhhhcccccccccCCCCcccccccccccCchhccCccccccccccccccccccc
Confidence                    00000    0               0000122344444453 799999999943211 10000       00


Q ss_pred             CCc--------cCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhCCCCCC--c
Q 008184          437 YPV--------LTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEA--I  506 (574)
Q Consensus       437 ~~~--------~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~p~~~~--i  506 (574)
                      .+.        ........+..||+++|.+||.+|++.|+|+.||+|||||||+|+||||.+||++||..++|...+  +
T Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~  536 (593)
T 4fo0_A          457 EEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRII  536 (593)
T ss_dssp             --------------CHHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHS
T ss_pred             ccccccccccccccccccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhcccc
Confidence            000        000011234579999999999999336999999999999999999999999999999999986532  2


Q ss_pred             ceEEEcCCC--CCCceeeEeceeeecccCCcccceeeHHHHHhcCCCceecccc
Q 008184          507 DMVEVLQSR--TNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGSGRKY  558 (574)
Q Consensus       507 ~~V~v~~~~--~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~~k~~  558 (574)
                      .+|+|++.+  .||++++|+||||||+|++|+++||||+||+|+|++||++||.
T Consensus       537 ~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~  590 (593)
T 4fo0_A          537 ENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA  590 (593)
T ss_dssp             SCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred             ceEEEECCCCCCCCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence            356777643  5899999999999999999999999999999999999999994
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 574
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 4e-20
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 1e-15
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 8e-07
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.1 bits (215), Expect = 4e-20
 Identities = 50/289 (17%), Positives = 94/289 (32%), Gaps = 67/289 (23%)

Query: 264 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDIL 323
           +T  V++ G  VT  + + +G ALP+    L   G D++  L+            R    
Sbjct: 2   TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE-------RGYSF 54

Query: 324 TKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 383
               +  ++  IKE  C +             +E+ M   +  + L      P G     
Sbjct: 55  VTTAEREIVRDIKEKLCYV----------ALDFENEMATAASSSSLEKSYELPDG----- 99

Query: 384 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTK 443
                                      T    R    +  +    +G+            
Sbjct: 100 ------------------------QVITIGNERFRCPETLFQPSFIGM------------ 123

Query: 444 PKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSN 503
               E  G+ E   +SI     ID+++ L+ +  + GG      + P + +R+   I + 
Sbjct: 124 ----ESAGIHETTYNSI-MKCDIDIRKDLYANNVMSGGTT----MYPGIADRMQKEITAL 174

Query: 504 EAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHI 552
               M   + +     Y  W GG++L  L   +  WI ++++   G  I
Sbjct: 175 APSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 223
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 99.97
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.96
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.94
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 98.86
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 98.53
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 97.56
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 97.29
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 97.13
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 93.73
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 92.47
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 91.44
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 84.82
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 83.86
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 83.45
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-47  Score=371.55  Aligned_cols=223  Identities=20%  Similarity=0.341  Sum_probs=181.0

Q ss_pred             CceEEEEEeCCCceEEEEeeCCeeccCCceeecccHHHHHHHHHHHHHhcCCCCCcccccccccccHHHHHHHHHhceec
Q 008184          263 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI  342 (574)
Q Consensus       263 ~~tglVVDiG~~~T~V~pV~dG~vl~~s~~~l~~GG~~it~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~lKe~~c~v  342 (574)
                      ++||||||+|++.|+|+||+||++++++++++++||++||++|.++|+.++.       ++....+.++++++||.+|++
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~-------~~~~~~~~~~~~~~ke~~~~~   73 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYV   73 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTC-------CCCSHHHHHHHHHHHHHHCCC
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccC-------CcCCHHHHHHHHHHHHHHhhc
Confidence            5899999999999999999999999999999999999999999999987752       344566788999999999999


Q ss_pred             cCCccccccccccccCCCCCCCceeEeeeecCCCCcCCCCcccCCCCCCCCCCCCCCCccccccCCccccCC-CCCCCCC
Q 008184          343 KEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISD  421 (574)
Q Consensus       343 ~~~~~~~~~~~~~y~~~~p~~~~k~~~~~~~~ap~~lf~p~~~~~e~~~~p~~~~~~d~~d~~~d~~~~~~~-er~~~~E  421 (574)
                      +.+.....   ..... .+.....+                                    .++|+..+.++ +|+.++|
T Consensus        74 ~~d~~~e~---~~~~~-~~~~~~~~------------------------------------~lpdg~~i~i~~er~~~~E  113 (225)
T d2fxua2          74 ALDFENEM---ATAAS-SSSLEKSY------------------------------------ELPDGQVITIGNERFRCPE  113 (225)
T ss_dssp             CSSHHHHH---HHHHH-CSTTCEEE------------------------------------ECTTSCEEEESTHHHHHHH
T ss_pred             ccchhHHH---hhccc-CcccceeE------------------------------------ECCCCCEEEEchHhccccH
Confidence            86422110   00000 00000000                                    13344444443 6899999


Q ss_pred             CCCC-CCCCCCCCCCCCCccCCCCCccccCCHHHHHHHHHHcCCChhHHHHHhcCeEEEcCCCCcCChHHHHHHHHhhhC
Q 008184          422 NFYP-GINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI  500 (574)
Q Consensus       422 ~lF~-~~~g~~~~~~~~~~~~~~~~~~~~~gL~e~I~~sI~~~~~~d~r~~L~~NIvL~GG~S~ipGf~eRL~~eL~~~~  500 (574)
                      .||. ...+                 .+..||+++|.+||.+| |.|+|+.|++||+|+||+|++|||.+||++||..+.
T Consensus       114 ~lF~p~~~~-----------------~~~~gl~~~i~~sI~~~-~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~  175 (225)
T d2fxua2         114 TLFQPSFIG-----------------MESAGIHETTYNSIMKC-DIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA  175 (225)
T ss_dssp             TTTCGGGGT-----------------CCSCCHHHHHHHHHHTS-CHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHS
T ss_pred             hhcCccccC-----------------CccCChhHHHHHHhhcC-CcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhh
Confidence            9994 4443                 45789999999999999 999999999999999999999999999999999999


Q ss_pred             CCCCCcceEEEcCCCCCCceeeEeceeeecccCCcccceeeHHHHHhcCCCcee
Q 008184          501 PSNEAIDMVEVLQSRTNPTYVSWKGGAVLGILDFGRDAWIHREDWIRNGIHIGS  554 (574)
Q Consensus       501 p~~~~i~~V~v~~~~~d~~~~aW~GgSIla~L~~f~~~wItr~eYee~G~~i~~  554 (574)
                      +...++   ++.. +.+|++++|+||||+|+|++|+++||||+||+|+|++|||
T Consensus       176 ~~~~~~---~v~~-~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         176 PSTMKI---KIIA-PPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             CTTCCC---CEEC-CTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             ccccce---EEec-CCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            877644   5554 3589999999999999999999999999999999999987
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure