Citrus Sinensis ID: 008185

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
Protein Sequence
MISSRVSTENQFITIIPKVPRFQKSSLKPVLCSSLNNRIHNNDNNSSSSRGSNSVSKFLNSSTKAKTAHVLVTTTESSSVSLKESKRLGSWAGGGGDEERRRDFGEVGINNFNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKGRKRGLSRRTRKNRRVGRVVIGSIFIYRRERESEAQG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccEEEEEEEEccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEccccccccccccccEEEEEccccccccccccccccccccccccHHHccccccccEEEEEcccccccccccHccccHccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccEEEHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHccccccccHHHHccccccHHHHHcccccEEEEEEEEEEEccccccccc
Coil and Loop (DISEMBL)
missrvstenqfitiipkvprfqksslkpvlcsslnnrihnndnnssssrgsnsvskflnsstkakTAHVLVTTtesssvslkeskrlgswaggggdeerrrdfgevginNFNKQMLVLCGLgywvqgfrcfpwlALNFHMahnlslhpstlqlvqnsgnlpmvakplYGILSDALyiggahripYICIGVFLQilswgplalfPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGilgnlfggyfllktpptTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVlsgsmfcyqtqclninpsvigMSRVIGQSMLLSLTVFYdrywkkvplrKLVGAVQILYASSLLLDLILVRQInlqfgvpnEVFVLCFAGLAETLAQFKLLPFSMLLARlcpqgcegsltsfSASALCLSSIASGFLGVGLAsltgitfgdysslpVGIVIQFLAALLPliwihnvpmseTIIEKGRkrglsrrtrknrrvgrVVIGSIFIYRRERESEAQG
Flexible Loop (DISEMBL)
missrvstenqfitiipkvprfqkssLKPVLCSSLNNRihnndnnssssrgsnsVSKFLNsstkaktahvlvtttesssvslkeskrlgswaggggdeerrrDFGEVGINNFNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVpmsetiiekgrkrglsrrtrknrrvgrvvigsifiyrrereseaqg
Low Complexity Region (SEG)
MISSRVSTENQFITIIPKVPRFQKSSLKPVLCsslnnrihnndnnssssrgsnsvsKFLNSSTKAKTAHvlvtttesssvslkeskRLGSWAggggdeerrrdfgevgINNFNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQilyassllldlilvrqinlQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGsltsfsasalclssiasGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKGRKRGLSrrtrknrrvgrvvIGSIFIYRRERESEAQG
Disordered region (IsUnstruct)
***********FITIIPKVPRF********L************************************************************************FGEVGINNFNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIE**************RRVGRVVIGSIFIYR*********
Disordered Region (DISOPRED)
*******************************************************************************************************FGEVGINNFNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPM**************************VIGSI*************
Disordered Region (DISEMBL)
*********NQFITIIPKVPRFQKSSLKPVLCSSLNNRIHNND*********************AKTAHVL**************************EERRRDFGEVGINNFNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKGRKRGLSRRTRKNRRVGRVVIGSIFIYRR********
Disordered Region (DISPRO)
*******TENQFITIIPKVPRFQKSSLKPVLCSSLNNRI****************************AHVLVTTTESSSV*L**SKRLGSWAGGGGDEERRRDFGEVGINNFNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGL****YQ**ASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSE*****************NRRVGRVVIGSIFIYRRE*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISSRVSTENQFITIIPKVPRFQKSSLKPVLCSSLNNRIHNNDNNSSSSRGSNSVSKFLNSSTKAKTAHVLVTTTESSSVSLKESKRLGSWAGGGGDEERRRDFGEVGINNFNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKGRKRGLSRRTRKNRRVGRVVIGSIFIYRRERESEAQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	574	2.2.26 [Sep-21-2011]
O22780	538	Probable folate-biopterin	yes	no	0.881	0.940	0.590	1e-165
F4I5Q2	542	Probable folate-biopterin	yes	no	0.818	0.867	0.644	1e-152
Q9XIQ7	442	Probable folate-biopterin	no	no	0.717	0.932	0.438	1e-86
Q8RWQ5	491	Probable folate-biopterin	no	no	0.735	0.859	0.322	2e-54
Q9SKZ5	560	Folate-biopterin transpor	no	no	0.672	0.689	0.283	1e-27
Q5FV41	499	Probable folate-biopterin	no	no	0.663	0.763	0.248	2e-20
Q55721	494	Folate-biopterin transpor	N/A	no	0.655	0.761	0.254	4e-20
Q9LEV7	503	Probable folate-biopterin	no	no	0.621	0.709	0.235	3e-18
Q9SQN2	497	Probable folate-biopterin	no	no	0.672	0.776	0.244	3e-18
F4KIL8	492	Probable folate-biopterin	no	no	0.674	0.786	0.241	7e-17

>sp|O22780|FBT9_ARATH Probable folate-biopterin transporter 9, chloroplastic OS=Arabidopsis thaliana GN=At2g33280 PE=3 SV=2

 Score =  582 bits (1501), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 307/520 (59%), Positives = 382/520 (73%), Gaps = 14/520 (2%)

Query: 59  LNSSTKAKTAHVLVTTTESSSVSLKESKRLGSWAGGGGDEERRRDFGEVGINNFNK---- 114
           LN++   K  H      +S ++ +K +KR  +         RRR+    G     K    
Sbjct: 25  LNTTINKKQKH------QSKTLVVKSNKRSTTSLTSSVSLVRRRNNNGDGETTLVKKVGR 78

Query: 115 ----QMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYG 170
               Q ++LC LGYWVQG RCF WLALNFHMAH L+L PSTLQLVQ + +LPMVAKPLYG
Sbjct: 79  DEKGQTVLLCALGYWVQGLRCFSWLALNFHMAHCLNLKPSTLQLVQYTASLPMVAKPLYG 138

Query: 171 ILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEV 230
           +LSD LYIGGA R+PYI +GV LQ L+WG LA+FP A + LP+LMA +LLSNLGASITEV
Sbjct: 139 VLSDVLYIGGARRVPYISVGVLLQGLAWGSLAIFPGAREVLPSLMAFILLSNLGASITEV 198

Query: 231 AKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQ 290
           ++DALVAEYG +  I GLQSYA MA+A GGILGNL GGY LLKTPP  +FL F  LLSLQ
Sbjct: 199 SQDALVAEYGLRYQINGLQSYALMASAVGGILGNLLGGYCLLKTPPRILFLAFTALLSLQ 258

Query: 291 LAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAM 350
           L +S S++EES+ L ++        S+   +KKQF DL   +  + IS PL W+V+S+A+
Sbjct: 259 LIVSLSSKEESVNLPRIGEVTPEISSVLGIVKKQFLDLKGIVQVDEISQPLIWIVSSIAL 318

Query: 351 VPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQIL 410
           VP+LSGS+FCYQTQ LN++PSVIGMS+VIGQ MLL LTV YDRYWKK+P+R L+  VQ+L
Sbjct: 319 VPLLSGSVFCYQTQVLNLDPSVIGMSKVIGQLMLLCLTVVYDRYWKKLPMRALIHIVQLL 378

Query: 411 YASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGS 470
           YA SLL D ILV+QINL FG+ N  FVLCF+ +AE LAQFK+LPFS+LLA +CP GCEGS
Sbjct: 379 YAFSLLFDYILVKQINLAFGISNTAFVLCFSSVAEILAQFKILPFSVLLANMCPGGCEGS 438

Query: 471 LTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPM 530
           +TSF AS LCLSS+ SGF GVG+A++ GIT  +YS+LP GI+IQ LAAL+PL +IH VPM
Sbjct: 439 ITSFLASTLCLSSVVSGFTGVGMANMIGITSKNYSNLPAGILIQSLAALVPLWFIHYVPM 498

Query: 531 SETIIEKGRKRGLSRRTRKNRRVGRVVIGSIFIYRRERES 570
            E   E+  KR +S+++R+NRRVGRV+    F YRRERE+
Sbjct: 499 LEPGFEREGKRAMSKKSRRNRRVGRVIGQESFAYRRERET 538

Could mediate folate transport.
Arabidopsis thaliana (taxid: 3702)

>sp|F4I5Q2|FBT8_ARATH Probable folate-biopterin transporter 8, chloroplastic OS=Arabidopsis thaliana GN=At1g04570 PE=2 SV=1

 Score =  540 bits (1392), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 308/478 (64%), Positives = 372/478 (77%), Gaps = 8/478 (1%)

Query: 94  GGGDEERRRDFGEVGINNFNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQ 153
           G  + E    F +VG     K + VLCGLGYWVQG RCFPWLALNFHM H+L+L PSTLQ
Sbjct: 69  GVSEFEETARFEQVG----GKGISVLCGLGYWVQGSRCFPWLALNFHMVHSLALQPSTLQ 124

Query: 154 LVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPN 213
           LVQ S +LPMVAKPLYG+LSD LYIG   R+PYI IGVFLQ+L+WG + +F  A + LP+
Sbjct: 125 LVQYSCSLPMVAKPLYGVLSDVLYIGSGRRVPYIAIGVFLQVLAWGSMGIFQGAREVLPS 184

Query: 214 LMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK 273
           L+ACVLLSNLGASITEVAKDALVAEYG +  I GLQSYA MA+A+GG+LGNL GGY LL 
Sbjct: 185 LVACVLLSNLGASITEVAKDALVAEYGLRYRINGLQSYALMASAAGGVLGNLLGGYLLLT 244

Query: 274 TPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIG 333
           TPP   FLVF+ LLSLQL +S S++EES GL +++     + S+ +S+KKQ S+L   I 
Sbjct: 245 TPPKISFLVFSALLSLQLVVSLSSKEESFGLPRIA----ETSSVLESVKKQISNLKEAIQ 300

Query: 334 EESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDR 393
            + IS PL W V S+AMVP+LSGS+FCYQTQ LN++PSVIGMS+VIGQ MLL LTV YDR
Sbjct: 301 ADEISQPLIWAVVSIAMVPLLSGSVFCYQTQVLNLDPSVIGMSKVIGQLMLLCLTVVYDR 360

Query: 394 YWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLL 453
           Y K +P+R L+  +Q+LY  S+LLD ILV+QINL FG+ NEV+VLCF+ LAE LAQFK+L
Sbjct: 361 YLKTLPMRPLIHIIQLLYGLSILLDYILVKQINLGFGISNEVYVLCFSSLAEILAQFKIL 420

Query: 454 PFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVI 513
           PF++ LA +CPQGCEGS+TSF AS LCLS I S FLGVGLA+L GIT  +YS+L  GI+I
Sbjct: 421 PFAVRLASMCPQGCEGSVTSFLASTLCLSQIVSAFLGVGLANLIGITSSNYSNLSSGILI 480

Query: 514 QFLAALLPLIWIHNVPMSETIIEKGRKRGLSRRTRKNRRVGRVVIGSIFIYRRERESE 571
           Q LAAL PL ++H VPMSE +IEK  KRG+S+R+R+NRRVGRVV      YRRERESE
Sbjct: 481 QSLAALAPLCFMHLVPMSEPVIEKEGKRGISKRSRRNRRVGRVVDKESVTYRRERESE 538

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIQ7|FBT7_ARATH Probable folate-biopterin transporter 7 OS=Arabidopsis thaliana GN=At1g64890 PE=2 SV=1

 Score =  321 bits (822), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/429 (43%), Positives = 271/429 (63%), Gaps = 17/429 (3%)

Query: 119 LCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYI 178
           L G G++VQGFR FPWL  NF +   L ++PS LQL+QNS NLPMVAKP+YG++SD++Y 
Sbjct: 22  LLGFGFFVQGFRGFPWLGANFFLTEQLRVNPSVLQLLQNSANLPMVAKPIYGVVSDSVYF 81

Query: 179 GGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAE 238
            G HRIPYI +G  LQ +SW  +A    +  ++  L   +LLSNLGAS+ EVA DA+VAE
Sbjct: 82  FGQHRIPYIAVGALLQAISWLAIAFLSRSNVSILALSIYLLLSNLGASLVEVANDAIVAE 141

Query: 239 YGQKNGIVG----LQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS 294
            G++         L S+ +M ++ GGILGNL GG  +      + FLVF +L  LQ  ++
Sbjct: 142 SGKQKTSETQSGELPSFVWMVSSLGGILGNLLGGIAIKTFSAQSTFLVFGILALLQFLVT 201

Query: 295 FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVL 354
            + RE+SL L +       + S A  I+K  SDL   + +  ISY + W+  S A+VPVL
Sbjct: 202 INIREKSLNLPE-------NPSPAGGIRKHLSDLSHVLRKPEISYSIAWIAVSTAVVPVL 254

Query: 355 SGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASS 414
           +G+MF YQT+ L I+ S++G+S+V GQ  +L     Y+R+ K +  RKL+ A+Q+  A  
Sbjct: 255 TGTMFFYQTKFLKIDASLLGISKVFGQIAMLLWGFAYNRWLKAMRPRKLLTAIQVTIAFF 314

Query: 415 LLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSF 474
           ++ DL+ V+ +    GV + V+VL F+G  ETL  FK+LPF++L+ARLCP GCEGSL +F
Sbjct: 315 VISDLLFVKGVYRDLGVSDSVYVLFFSGFLETLFYFKILPFTVLMARLCPPGCEGSLMAF 374

Query: 475 SASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLI---WIHNVPMS 531
             SA+ L+ I SG+LG+ LAS  G+T  D+S    G+ I+     +PLI   WI++   +
Sbjct: 375 VMSAIALAFIVSGYLGIVLASFVGVTEDDFSGFTRGLAIEACCVGIPLILTSWIYDEAET 434

Query: 532 ETIIEKGRK 540
           +   EK +K
Sbjct: 435 K---EKSKK 440

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWQ5|FBT4_ARATH Probable folate-biopterin transporter 4 OS=Arabidopsis thaliana GN=At5g54860 PE=2 SV=1

 Score =  214 bits (544), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 153/475 (32%), Positives = 232/475 (48%), Gaps = 53/475 (11%)

Query: 112 FNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGI 171
           F    L L  L Y+ QGFR F W A+++ +   L L PS  Q V +    P   KPLYGI
Sbjct: 12  FGVAFLWLVCLIYFTQGFRSFVWTAVSYQLKDRLQLSPSASQFVFSVAFFPWSIKPLYGI 71

Query: 172 LSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVA 231
           +SD + IGG  R PY+ I   L ++ W  L L   +  +   LM  + + NLG+++ +V 
Sbjct: 72  ISDCIPIGGKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLTVQNLGSAMADVV 131

Query: 232 KDALVAEYG--QKNGIVG-LQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLS 288
            DA++AE    +K    G LQS ++ A A GG+ G+L GGY L      T+FL+F VL +
Sbjct: 132 IDAMIAEAVRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKIETIFLLFTVLPA 191

Query: 289 LQ-------------------LAISFSAREESL--------------------------- 302
           LQ                   L  S    E+SL                           
Sbjct: 192 LQLLSCALVEESPANNEPLPELLDSNEFEEKSLTSNDNYPDTSKSNTRRRKGQKKGKKGD 251

Query: 303 GLAQVSYQNVASKSIA----QSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSM 358
              +   Q   SKS+A    QS+K     L     +  I  P+ W   +   VP LS  M
Sbjct: 252 SNGKSETQKKQSKSLASQWFQSLKAATFGLGRAFKQPIILRPMAWFFIAHITVPNLSTVM 311

Query: 359 FCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLD 418
           F YQT+ L ++ + +G +RV+G   L+  T  Y+RY + + LRK +    I  + ++LLD
Sbjct: 312 FYYQTEVLQLDAAFLGTARVVGWLGLMFGTFIYNRYLQDMTLRKSLLFAHIGLSVTILLD 371

Query: 419 LILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASA 478
           ++LV + N+ +GV ++  VL  + L + + Q K +PF +L  RLCP G EG+L +   S 
Sbjct: 372 MVLVSRANVGYGVSDKTMVLFGSALGDAINQLKFMPFLILSGRLCPPGIEGTLFALFMSI 431

Query: 479 LCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSET 533
             L +    F+G GLASL GI+ G + ++ +G+ IQ     +P++++  +P   T
Sbjct: 432 NNLGNTVGSFMGAGLASLLGISSGSFDNMFMGLAIQVFCTYIPVLFLFLIPKEAT 486

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKZ5|FBT1_ARATH Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana GN=At2g32040 PE=2 SV=2

 Score =  125 bits (313), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 188/399 (47%), Gaps = 13/399 (3%)

Query: 118 VLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALY 177
           V   + Y+VQG      LA++F++  +L L P+   ++    +LP + KPLYG +SD++ 
Sbjct: 128 VAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVITGLSSLPWLVKPLYGFISDSVP 187

Query: 178 IGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVA 237
           + G  R  Y+ +   L   SW  +A F V +K   +   C+LL +L  + ++V  D++V 
Sbjct: 188 LFGYRRRSYLVLSGLLGAFSWSLMAGF-VDSKY--SAAFCILLGSLSVAFSDVVVDSMVV 244

Query: 238 EY--GQKNGIVG-LQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS 294
           E   G+   + G LQS  + ++A GGI+ + F G  +       +F V A+L  +  A++
Sbjct: 245 ERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGVTALLPLITSAVA 304

Query: 295 FSAREESL---GLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMV 351
               E+ +      Q     + S    Q+ K+    L   I + ++  P T  +      
Sbjct: 305 VLVNEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFLP-TLFIFLWQAT 363

Query: 352 PVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILY 411
           P    +MF + T  L   P  +G  +++     L     Y+ + K VPLRK+     I  
Sbjct: 364 PHSDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPLRKIFLVTTIFG 423

Query: 412 ASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSL 471
               +  +ILV   N Q G+ +E F +  + +   LAQ   +P  +L ARLCP+G E +L
Sbjct: 424 TGLGMTQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAARLCPEGMEATL 483

Query: 472 TSFSASALCLSSIASGFLGVGLASLTGIT---FGDYSSL 507
            +   S     S+  G +G GL    GIT   FG+ S+L
Sbjct: 484 FATLMSISNGGSVLGGLMGAGLTQAFGITRDSFGNLSTL 522

Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5FV41|FBT2_ARATH Probable folate-biopterin transporter 2 OS=Arabidopsis thaliana GN=At5g25050 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 186/411 (45%), Gaps = 30/411 (7%)

Query: 135 LALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQ 194
           +A  ++M     + PS  Q +     +P + KPL+GIL+D L I G HR PY  +   L 
Sbjct: 66  VATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRPYFILAGVLG 125

Query: 195 ILSWGPLALFPVAAKALPNLMAC--VLLSNLGASITEVAKDALVAEYGQKNGIVG--LQS 250
           ++S     LF      L   +A   + +S+   +I +V  DA  A    K+  +   +QS
Sbjct: 126 VVS----LLFISLHSNLHLYLALFWMTISSAAMAIADVTIDACTAYNSIKHPSLASDMQS 181

Query: 251 YAFMAAASGGILGNLFGGYFLLKTPPTTMF--LVFAVLLSLQLAISFSAREESLGLAQVS 308
              ++++ G +LG    G  +       +F  L F   L   + I FS       +   S
Sbjct: 182 LCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVGIVFSEPH----VPGFS 237

Query: 309 YQNVASKSIAQSIKKQFSD----LIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQ 364
           Y+ V  K         F+D    +  T+    +  P  ++  S+ +   +   +F + T 
Sbjct: 238 YKQVNQK---------FTDAGKAMWRTMKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTD 288

Query: 365 CLN---INPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLIL 421
             +        +G    IG    +     Y    K  P R L    Q+L+A S +LDLIL
Sbjct: 289 SKDGPLFAQETVGFILSIGSIGSILAATLYQLVLKDHPFRGLCLWTQLLFALSGMLDLIL 348

Query: 422 VRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCL 481
           V ++NL+FG+P+ +F++    +++ + + K +P  +L ++LCP G EG+  +   S    
Sbjct: 349 VFRLNLKFGLPDYLFIVVDEIVSQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNA 408

Query: 482 SSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSE 532
             + S +LG  +  +  +T  ++ +L + ++++ +  LLPL ++  VP  +
Sbjct: 409 GLMTSSWLGGIMLHVLKVTRTEFGNLWLAVLVRNVMRLLPLCFLFLVPKGD 459

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55721|FBT_SYNY3 Folate-biopterin transporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0642 PE=1 SV=1

 Score =  100 bits (248), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 170/393 (43%), Gaps = 17/393 (4%)

Query: 124 YWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHR 183
           Y+VQG      LA++F +   L L P+ +  +   G  P + KP+ G++SD + + G  R
Sbjct: 43  YFVQGVLGLSRLAVSFFLKDELGLSPAAMGALIGLGAAPWILKPVLGLMSDTVPLFGYRR 102

Query: 184 IPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKN 243
             Y+ +   +    W    LF     +       +L ++L  +I +V  D+LV E  Q+ 
Sbjct: 103 RSYLWLSGLMGSAGW---LLFAAWVSSGTQAGLVLLFTSLSVAIGDVIVDSLVVERAQRE 159

Query: 244 GI--VG-LQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREE 300
            +  VG LQS  + AAA GGI+     G  L      T+F + A+   L +  +F   E 
Sbjct: 160 SLAQVGSLQSLTWGAAAVGGIITAYASGALLEWFSTRTVFAITAIFPLLTVGAAFLISEV 219

Query: 301 SLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFC 360
           S    +   Q  A   +     +Q + L+ T+      +   W        P    + F 
Sbjct: 220 STAEEEEKPQPKAQIKLVWQAVRQKTILLPTL------FIFFW-----QATPSAESAFFY 268

Query: 361 YQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLI 420
           + T  L   P  +G  R++     L     Y R+ K +P R ++G   ++ +   L  LI
Sbjct: 269 FTTNELGFEPKFLGRVRLVTSVAGLIGVGLYQRFLKTLPFRVIMGWSTVISSLLGLTTLI 328

Query: 421 LVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALC 480
           L+   N   G+ +  F L  + +     Q   +P  +L ARLCP G E +L +   S + 
Sbjct: 329 LITHANRAMGIDDHWFSLGDSIILTVTGQIAFMPVLVLAARLCPPGIEATLFALLMSVMN 388

Query: 481 LSSIASGFLGVGLASLTGITFGDYSSLPVGIVI 513
           L+ + S  +G  L    G+T   + +L + ++I
Sbjct: 389 LAGVLSFEVGSLLTHWLGVTETQFDNLALLVII 421

Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9LEV7|FBT6_ARATH Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana GN=At5g10820 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 175/386 (45%), Gaps = 29/386 (7%)

Query: 161 LPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMA--CV 218
           +P V +P++G+ +D   I G  R PY  +   L ++S    A+  V    LP  +A  C+
Sbjct: 104 IPWVMRPIWGLFTDVFPIKGYKRKPYFVVSGVLGLVS----AIAIVVLGKLPAALALSCL 159

Query: 219 LLSNLGASITEVAKDALVA--EYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPP 276
           L  +   +I +V  DA +A      ++    +QS   + +++G ++G    G F+ +  P
Sbjct: 160 LGVSAAMAIADVVIDACIATNSINIRSLAPDIQSLCMVCSSAGALVGYATSGVFVHQLGP 219

Query: 277 TTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDL-IATIGE- 334
                V A   +  + + F             Y+  +S    Q  KK    L +A  G  
Sbjct: 220 QGALGVLAFSPATIVILGF-----------FIYEKRSSTVPTQKTKKDTDGLGVAVKGMC 268

Query: 335 ESISYPLTW-----LVASVAM-VPVLSGSMFCYQ--TQCLNINPSVIGMSRVIGQSMLLS 386
           +++ YP  W     +  S+A+ +    G  + Y   T     +   +G+   +G    + 
Sbjct: 269 KTVKYPEVWKPSLYMFISLALNISTHEGHFYWYTDPTAGPAFSQEFVGIIYAVGALASMF 328

Query: 387 LTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAET 446
             + Y +  K    R ++   Q+LY  S +LDL+ +++ NL  G+P+ +FV+      + 
Sbjct: 329 GVLIYHKKLKGYSFRNILFFAQLLYVFSGMLDLVFIKRWNLTLGIPDSLFVITEESFTKM 388

Query: 447 LAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSS 506
           +++ + +P  +L  RLCP G EG+  +F         +AS + G  +    G+T  D+ +
Sbjct: 389 ISKIRWIPMVVLSTRLCPLGIEGTFFAFLMCIDSFGQLASKWGGGFVLHAFGVTRHDFGN 448

Query: 507 LPVGIVIQFLAALLPLIWIHNVPMSE 532
           L + I+I+ +  L+ + ++  VP S+
Sbjct: 449 LWLVILIRNILRLVTVCFVFLVPDSD 474

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQN2|FBT3_ARATH Probable folate-biopterin transporter 3 OS=Arabidopsis thaliana GN=At1g79710 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 184/409 (44%), Gaps = 23/409 (5%)

Query: 138 NFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILS 197
            ++      + PS  Q+      +P + KPL+G+L+D + + G  R PY  +  FL ++S
Sbjct: 73  QYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDVVPVLGYRRRPYFILAGFLAMIS 132

Query: 198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVG--LQSYAFMA 255
              L L      AL   ++C++  + G +I +V  DA V +    +  +   +QS   + 
Sbjct: 133 MMVLWLHTNLHLALA--LSCLVAGSAGVAIADVTIDACVTQCSISHPTLAADMQSLCGLC 190

Query: 256 AASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSARE---ESLGLAQVSYQNV 312
           ++ G ++G    G  +       ++ +  V   L + +    +E    SLG   V+ + +
Sbjct: 191 SSIGSLVGFSLSGVLVHLVGSKGVYGLLGVTAGLLVVVGMVLKESPSRSLGRKHVNDKFL 250

Query: 313 ASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLN---IN 369
            + S   +I K F       GE  +  P  +++ S A+   +   MF + T   +    +
Sbjct: 251 DAGS---AIWKTFQ-----YGE--VWRPCLFMLLSAAVSLHIHEGMFYWYTDSKDGPSFS 300

Query: 370 PSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQF 429
              +G     G    L   + Y  + K  P R +V     L   S  LDLILV +INL+ 
Sbjct: 301 KEAVGSIMSFGAIGSLVGILLYQNFLKNFPFRNVVFWALSLSVLSGFLDLILVLRINLKL 360

Query: 430 GVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFL 489
           G+P+  F++    ++  +++ K LP  +L ++LCP G EG+  +   S   +  + S + 
Sbjct: 361 GLPDYFFIVVDEFVSHMISRIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLVSSWG 420

Query: 490 GVGLASLTGITFGDYSSLPVGIVIQFLAALLPL---IWIHNVPMSETII 535
           G  L     +T   + +L + IVI+ L  ++P+     I NV  + TI+
Sbjct: 421 GGVLLHALKVTRTQFDNLWLVIVIRSLLRVIPIGLVFLIPNVDSNSTIL 469

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|F4KIL8|FBT5_ARATH Probable folate-biopterin transporter 5 OS=Arabidopsis thaliana GN=At5g25040 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 193/431 (44%), Gaps = 44/431 (10%)

Query: 120 CGLGYWVQGF-RCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLP-MVAKPLYGILSDALY 177
           CG+    QGF      +A +++M     + PS  Q +     +  ++ KPL+GIL+D L 
Sbjct: 53  CGIN---QGFGYSLGHVATDYYMKDVQKVQPSQYQALSAITRISWIIFKPLFGILTDVLP 109

Query: 178 IGGAHRIPY-ICIGVFLQILSWGPLALFPVAAKALPNLMACVL---LSNLGASITEVAKD 233
           I G HR PY I  GV       G ++L  ++ ++  +L   +    +S+   +I +V  D
Sbjct: 110 IFGFHRRPYFILAGVI------GVVSLLFISLQSNLHLYLALFWMTISSAAMAIADVTID 163

Query: 234 ALVAEYGQKNGIVG--LQSYAFMAAASG--------GILGNLFG--GYFLLKTPPTTMFL 281
           A       K+  +   +QS   ++ + G        GIL +L G  G F L T    +  
Sbjct: 164 ACTTYNSNKHPSLASDMQSLCSLSYSIGELLGFFMSGILVHLVGSKGVFGLLTFTFALVS 223

Query: 282 VFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPL 341
           V  VL S      FS ++      +  ++ +    + Q     F  +   +G +      
Sbjct: 224 VVGVLFSEPRVHGFSFKQNFTNAMKAMWRTIKCSDVWQPSLYMF--ITRALGLDIKEGLF 281

Query: 342 TWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLR 401
            W   S        G +F  +T    ++   IG   ++G        + Y+   K  P R
Sbjct: 282 YWFTDSK------DGPLFAQETVGFILSIGSIG--SILG-------VLLYNLRLKDHPFR 326

Query: 402 KLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLAR 461
           KL    Q+L+A S + DLILV ++NL+FG+P+ +F++    +++ + +   +   +L  +
Sbjct: 327 KLFLWTQLLFALSGMFDLILVLRLNLKFGLPDYLFIVVDGIVSKMIIRLTWMVIFVLNTK 386

Query: 462 LCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLP 521
           LCP G EG+  +   S      + S +LG  +  +  +T  ++ +L + ++++ +  LLP
Sbjct: 387 LCPHGIEGTFFALLMSIDNAGLMTSSWLGGKMLHVLKVTRTEFGNLWLAVLVRNVMRLLP 446

Query: 522 LIWIHNVPMSE 532
           + ++  VP  +
Sbjct: 447 ICFLFLVPQGD 457

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	574
224110666	470	predicted protein [Populus trichocarpa]	0.817	0.997	0.752	0.0
255554334	552	transporter, putative [Ricinus communis]	0.945	0.983	0.643	0.0
449433217	460	PREDICTED: probable folate-biopterin tra	0.799	0.997	0.710	0.0
357455857	559	hypothetical protein MTR_3g008470 [Medic	0.801	0.822	0.723	0.0
225433312	551	PREDICTED: uncharacterized protein LOC10	0.933	0.972	0.617	1e-180
356517770	453	PREDICTED: uncharacterized protein LOC10	0.789	1.0	0.720	1e-176
224102267	412	predicted protein [Populus trichocarpa]	0.716	0.997	0.751	1e-172
356510324	540	PREDICTED: uncharacterized protein LOC10	0.923	0.981	0.6	1e-171
147766856	534	hypothetical protein VITISV_003774 [Viti	0.904	0.971	0.590	1e-169
410591668	538	RecName: Full=Probable folate-biopterin	0.881	0.940	0.590	1e-163

>gi|224110666|ref|XP_002315595.1| predicted protein [Populus trichocarpa] gi|222864635|gb|EEF01766.1| predicted protein [Populus trichocarpa]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/473 (75%), Positives = 411/473 (86%), Gaps = 4/473 (0%)

Query: 99  ERRRDFGEVGINNFNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNS 158
           E RR FG +G    ++QML LCG GYW+QGFRCFPWLALNFHMAHNL+LH STLQL+QN 
Sbjct: 2   EERRGFGHLG----SQQMLALCGFGYWMQGFRCFPWLALNFHMAHNLNLHSSTLQLLQNC 57

Query: 159 GNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACV 218
           GN PMVAKPLYGILSDALY GGAHRIPYI +GVFLQ+L+WGPLAL PVA +AL  LMAC+
Sbjct: 58  GNFPMVAKPLYGILSDALYTGGAHRIPYILVGVFLQVLAWGPLALIPVAREALGILMACI 117

Query: 219 LLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTT 278
           L+SNLGASITE+AKDALVAEYGQKN I GLQSYAFMA A GGILGNL GG FL KTPP T
Sbjct: 118 LISNLGASITEIAKDALVAEYGQKNRIGGLQSYAFMALAVGGILGNLLGGCFLQKTPPKT 177

Query: 279 MFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESIS 338
           MFLVF+VLLSLQLA S + RE+SLGL++ S  N+  KSI ++I+KQ SDL   + +++IS
Sbjct: 178 MFLVFSVLLSLQLAFSSTVREKSLGLSEPSDHNLVKKSIWENIRKQISDLKTALNDDNIS 237

Query: 339 YPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKV 398
            PLTW+VAS+A VPVLSGS+FCYQTQCL+ +PS+IGMSR IGQ +LLS+T+ YDR+WK+V
Sbjct: 238 CPLTWIVASIATVPVLSGSIFCYQTQCLHFDPSIIGMSRAIGQLILLSMTIIYDRFWKEV 297

Query: 399 PLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSML 458
           P+RKLV AVQ LYA SLLLDL+LVRQINL+ G+PNEVF  CF+GLAETLAQFKLLPFSML
Sbjct: 298 PVRKLVSAVQFLYACSLLLDLVLVRQINLKLGIPNEVFACCFSGLAETLAQFKLLPFSML 357

Query: 459 LARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAA 518
           LA LCPQGCEGSLTSF AS+LCLSSI SGFLGVGLASL GIT G+YSSLPVGI+IQFLAA
Sbjct: 358 LASLCPQGCEGSLTSFLASSLCLSSIVSGFLGVGLASLIGITSGNYSSLPVGILIQFLAA 417

Query: 519 LLPLIWIHNVPMSETIIEKGRKRGLSRRTRKNRRVGRVVIGSIFIYRRERESE 571
           LLPL WIH +PMS+ I+EK R+RG+S+RTRKNRRVGRVV+GSI++Y RERES+
Sbjct: 418 LLPLGWIHRLPMSKPIVEKERRRGMSKRTRKNRRVGRVVLGSIYVYHRERESD 470

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554334|ref|XP_002518207.1| transporter, putative [Ricinus communis] gi|223542803|gb|EEF44340.1| transporter, putative [Ricinus communis]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/580 (64%), Positives = 443/580 (76%), Gaps = 37/580 (6%)

Query: 1   MISSRVSTENQFITIIPKVP-------RFQKSSLKPVLCSSLNNRIHNNDNNSSSSRGSN 53
           ++ S  +T+N   TI+PK P       +     L+P+ CS      HN + N+       
Sbjct: 2   VVPSSTATKNPLSTILPKNPNLPLHTSKLSHFRLRPIQCS-----FHNQNPNT------- 49

Query: 54  SVSKFLNSSTKAKTAHVLVTTTESSSVSLKESKRLGSWAGGGGDEERRRDFGEVGINNFN 113
                +N   K  T H+    T+S   S K++     +       E +R F +VG    +
Sbjct: 50  -----INKLAKPGT-HLYGVITQSPVFSKKDNNTCRGY-------EEKRGFVQVG----S 92

Query: 114 KQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILS 173
           +QM VL G GYWVQGFRCFPWLALNFHMAH+L+LHPS LQLVQ+SGNLPMVAKPLYGIL+
Sbjct: 93  QQMAVLSGFGYWVQGFRCFPWLALNFHMAHHLNLHPSLLQLVQHSGNLPMVAKPLYGILT 152

Query: 174 DALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKD 233
           DA+YIGGAHRIPYI IGV LQ+LSWGPLAL P   + LP+L+AC+LL NLGASI EVA D
Sbjct: 153 DAVYIGGAHRIPYILIGVLLQVLSWGPLALIPATRETLPSLLACILLGNLGASIAEVAND 212

Query: 234 ALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI 293
           ALVAEYGQK+ + GLQSYAFMA A GGILGNL GG  LLKTPP +MFL+FA LLS+QLAI
Sbjct: 213 ALVAEYGQKHKMKGLQSYAFMALAVGGILGNLLGGCCLLKTPPKSMFLIFAGLLSIQLAI 272

Query: 294 SFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPV 353
           S ++REESLG++Q SY NVA KSI  + KKQ  DL   + E  IS PLTW+VAS+A+VP+
Sbjct: 273 SSTSREESLGISQSSYHNVAKKSIWDNFKKQLGDLKTALREGIISCPLTWVVASIAIVPI 332

Query: 354 LSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYAS 413
           LSGS+FCYQTQCLN++PS IGMSRVIGQ MLLS+TV YDRYWK+VP+RKL+ AVQ +YA 
Sbjct: 333 LSGSIFCYQTQCLNLDPSFIGMSRVIGQLMLLSMTVLYDRYWKEVPMRKLIAAVQFMYAF 392

Query: 414 SLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTS 473
           SLLLD ILVRQINL+ G+PNEVFV CF+GLAETLAQFKLLPFS+LLA +CP+GCEGSLTS
Sbjct: 393 SLLLDFILVRQINLRLGIPNEVFVCCFSGLAETLAQFKLLPFSVLLASICPKGCEGSLTS 452

Query: 474 FSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSET 533
           F AS LC SSI SGFLGVGLASL GIT GDYS LP+GI+IQF+AALLPL WI  VP S+ 
Sbjct: 453 FLASTLCFSSIFSGFLGVGLASLMGITAGDYSGLPIGILIQFIAALLPLGWIQKVP-SQP 511

Query: 534 IIEKGRKRGLSRRTRKNRRVGRVVIGSIFIYRRERESEAQ 573
           IIEK RKR +S+RTR+NRR+GRVV+GS+F+YRRERESE Q
Sbjct: 512 IIEKERKRSVSKRTRRNRRIGRVVLGSVFVYRRERESETQ 551

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433217|ref|XP_004134394.1| PREDICTED: probable folate-biopterin transporter 9, chloroplastic-like [Cucumis sativus] gi|449527783|ref|XP_004170889.1| PREDICTED: probable folate-biopterin transporter 9, chloroplastic-like [Cucumis sativus]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/460 (71%), Positives = 390/460 (84%), Gaps = 1/460 (0%)

Query: 116 MLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDA 175
           ML+LCGLGYWVQGFRCFPWLALNFHMAH L+LHPS LQLVQNSGNLPMVAKPLYGILSDA
Sbjct: 1   MLLLCGLGYWVQGFRCFPWLALNFHMAHYLNLHPSLLQLVQNSGNLPMVAKPLYGILSDA 60

Query: 176 LYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDAL 235
           LYIGGA R+PYI IGV LQ+LSWG LAL PVA +ALP LMACVLLSNLGASITEVAKDAL
Sbjct: 61  LYIGGARRVPYISIGVLLQVLSWGSLALIPVAGEALPALMACVLLSNLGASITEVAKDAL 120

Query: 236 VAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISF 295
           VAEYGQ N I GLQSY FMA A GG+LGN  GGY LL +PP  MFL+F++LLSLQL++S 
Sbjct: 121 VAEYGQTNKICGLQSYTFMALAVGGVLGNFIGGYNLLSSPPRKMFLLFSILLSLQLSVSL 180

Query: 296 SAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLS 355
           + REESLGL Q+   +V  KSI ++++ Q S+L+  I + S+S PL W+VAS+A+VP+LS
Sbjct: 181 ATREESLGLLQLPEPDVQGKSIMENVRNQISELVTVISDPSVSRPLAWIVASIAIVPLLS 240

Query: 356 GSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSL 415
           GS+FCYQTQCLN++PS+IGMSRV+ Q +LLS+TV YDR+WK+VP++KL+G VQILYA S 
Sbjct: 241 GSIFCYQTQCLNLDPSIIGMSRVVSQLVLLSVTVLYDRHWKRVPMKKLIGMVQILYALSF 300

Query: 416 LLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFS 475
           LLD++L++QINL+ G+ NE+F LCF+GLAET+AQFKLLPFS+L A L P+GCEGSL SF 
Sbjct: 301 LLDIVLMKQINLKLGISNELFALCFSGLAETIAQFKLLPFSVLFASLSPKGCEGSLISFF 360

Query: 476 ASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETII 535
           ASA+CLSSI SGFLG+GLASL GI  G+YSSLPVGI+IQF+AAL PL  IH VPM   ++
Sbjct: 361 ASAVCLSSIVSGFLGIGLASLIGIGSGNYSSLPVGILIQFIAALFPLTCIHFVPMKSPVL 420

Query: 536 EKGRKRGLSRRTRKNRRVGRVVI-GSIFIYRRERESEAQG 574
           E+ +KR +SRR+RKNRRVGRV+  GS+  YRRERESE QG
Sbjct: 421 EREKKRVMSRRSRKNRRVGRVMYSGSVCAYRRERESEIQG 460

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455857|ref|XP_003598209.1| hypothetical protein MTR_3g008470 [Medicago truncatula] gi|355487257|gb|AES68460.1| hypothetical protein MTR_3g008470 [Medicago truncatula]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/460 (72%), Positives = 386/460 (83%)

Query: 114 KQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILS 173
           KQML+LCG GYW+QGFRCFPWLALNFHMA NL+L PS LQLVQ S NLPMVAKPLYGILS
Sbjct: 99  KQMLILCGFGYWLQGFRCFPWLALNFHMASNLNLDPSILQLVQYSANLPMVAKPLYGILS 158

Query: 174 DALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKD 233
           D +YIGGAHRIPYI  GV LQI +W  LA  P A + L  L+A VLLSNLGASITEVAKD
Sbjct: 159 DVIYIGGAHRIPYIITGVLLQIFAWNYLAFVPAAREVLTVLVAAVLLSNLGASITEVAKD 218

Query: 234 ALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI 293
           ALVAEYG+K+ I GLQSYAFMA A+GGILGNL GGYFLLK PP  MF++F+ LLSLQLAI
Sbjct: 219 ALVAEYGKKHKIGGLQSYAFMALAAGGILGNLVGGYFLLKLPPRIMFMIFSSLLSLQLAI 278

Query: 294 SFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPV 353
           SF  RE+SLG+ Q S  N+A++SI+++I+KQ SDL   I ++SISYPL W+V S+A VP+
Sbjct: 279 SFLTREDSLGIPQPSTLNLATQSISENIRKQASDLFVAISDKSISYPLLWIVGSIATVPM 338

Query: 354 LSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYAS 413
           L+GS+FCYQTQCLN++P +IG SRVIGQ MLLS TV Y+RYWKK P+R L+GAVQILYAS
Sbjct: 339 LTGSIFCYQTQCLNLDPMIIGWSRVIGQLMLLSGTVLYNRYWKKFPMRNLIGAVQILYAS 398

Query: 414 SLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTS 473
           SLLLDL+LVRQINL+FG+PNEVF  CF+GLAE LAQFKLLPFS+L A LCP+GCEGSLTS
Sbjct: 399 SLLLDLVLVRQINLKFGIPNEVFAPCFSGLAEVLAQFKLLPFSVLFANLCPKGCEGSLTS 458

Query: 474 FSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSET 533
           F AS L LSSI SGF GVGLASL GIT GDYS L VGI+IQF+AALLPL WI ++PMS++
Sbjct: 459 FLASTLILSSIVSGFFGVGLASLLGITSGDYSGLTVGILIQFVAALLPLRWIGSIPMSQS 518

Query: 534 IIEKGRKRGLSRRTRKNRRVGRVVIGSIFIYRRERESEAQ 573
             EK R++ +SRR R+NRRVG+VVIGSI  YRRERE E+Q
Sbjct: 519 DSEKQRRKSMSRRARRNRRVGKVVIGSINAYRREREWESQ 558

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433312|ref|XP_002282484.1| PREDICTED: uncharacterized protein LOC100249433 [Vitis vinifera]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 350/567 (61%), Positives = 419/567 (73%), Gaps = 31/567 (5%)

Query: 1   MISSRVSTENQFITIIPKV----PRFQKSSLKPVLCSSLNNRIHNNDNNSSSSRGSNSVS 56
           MI   +S       I P V    P+     +KPV CS  N+R           +  N+V 
Sbjct: 1   MIFPSISVRAPLNPITPSVLKPPPKPSLFRVKPVHCS--NHR-----------QNPNAVD 47

Query: 57  KFLNSSTKAKTAHVLVTTTESSSVSLKESKRLGSWAGGGGDEERRRDFGEVGINNFNKQM 116
           K    S K  T  +   T  +  V+ K  K+        GDEERR    +VG    ++QM
Sbjct: 48  K----SVKLTTHLIHPITVATELVNKKHGKK------NSGDEERRESSSQVG----SRQM 93

Query: 117 LVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDAL 176
           L LCG GY VQGFRCFPWLALNFHMAHNL L PS +Q+VQN GNLPMVAKPL+GILSDA 
Sbjct: 94  LGLCGFGYGVQGFRCFPWLALNFHMAHNLRLDPSMMQIVQNIGNLPMVAKPLFGILSDAF 153

Query: 177 YIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALV 236
           YIGGAHRIPYI +G FLQILSWG L+L PVA +AL  LM CVLLSNLGASITEVA+DALV
Sbjct: 154 YIGGAHRIPYIFLGAFLQILSWGALSLIPVAGEALATLMLCVLLSNLGASITEVAQDALV 213

Query: 237 AEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFS 296
           AEYGQK+   GLQSYAFMA A+GGILGNLFGGYFL  T   TMFLVFA+LL  Q+A+S +
Sbjct: 214 AEYGQKHRKGGLQSYAFMAVAAGGILGNLFGGYFLQNTQTNTMFLVFAILLLFQVAVSLT 273

Query: 297 AREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSG 356
            +E+SLGL Q   +N+  KSI + +++QFS+L+ TI E+ I  PL W+VAS+AMVP+LSG
Sbjct: 274 TKEDSLGLPQPVDENLVGKSIFEGVREQFSNLVTTISEDGICRPLAWVVASIAMVPILSG 333

Query: 357 SMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLL 416
            +FCYQTQCL ++PS IGMSRV+ Q MLLS TV Y+++WK++P+RKL+G VQILYASSLL
Sbjct: 334 PIFCYQTQCLCLDPSTIGMSRVVSQLMLLSATVLYNQFWKRIPMRKLIGTVQILYASSLL 393

Query: 417 LDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSA 476
           LDL+LVRQINL  G+PN+VF LCF+G+AET+AQFKLLPFS+L A LCP GCEGSLTSF A
Sbjct: 394 LDLVLVRQINLSLGIPNQVFALCFSGVAETIAQFKLLPFSVLFASLCPSGCEGSLTSFLA 453

Query: 477 SALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIE 536
           SA CLSSI SG  G GLASL GIT GDYSSLPVGI+IQFLAAL+PL W+H VPM +   E
Sbjct: 454 SAFCLSSIFSGVFGAGLASLIGITGGDYSSLPVGILIQFLAALVPLGWMHLVPMVDPTAE 513

Query: 537 KGRKRGLSRRTRKNRRVGRVVIGSIFI 563
           K RK+G S+R+R+NRRVGRV + SI++
Sbjct: 514 KERKKGTSKRSRRNRRVGRVALDSIYV 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517770|ref|XP_003527559.1| PREDICTED: uncharacterized protein LOC100782464 [Glycine max]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 327/454 (72%), Positives = 388/454 (85%), Gaps = 1/454 (0%)

Query: 116 MLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDA 175
           M++LCG GYWVQGFRCFPWLALNFHMA NL+LHPSTLQLVQN  NLPMVAKPLYGILSDA
Sbjct: 1   MMLLCGFGYWVQGFRCFPWLALNFHMASNLNLHPSTLQLVQNLANLPMVAKPLYGILSDA 60

Query: 176 LYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDAL 235
           +YI GAHRIPY+ IG FLQ+ SW  LAL PVA K LPN++  VLLSN+GASITEVA+DAL
Sbjct: 61  IYIKGAHRIPYVVIGGFLQVFSWSLLALVPVAHKVLPNIIVFVLLSNMGASITEVAQDAL 120

Query: 236 VAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISF 295
           VAEYG+K+ I  LQSYAFMA A+GGILGNL GGY LLK PP  MF +F+ LLSLQLAISF
Sbjct: 121 VAEYGKKHKIGSLQSYAFMALAAGGILGNLIGGYLLLKLPPRAMFFIFSSLLSLQLAISF 180

Query: 296 SAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLS 355
           S REESLG+AQ+S QN+A +SI+++IKKQ S+L+  I ++SIS PL W+V S+AMVP+LS
Sbjct: 181 STREESLGIAQLSGQNLAKRSISENIKKQVSNLVMAISDKSISKPLIWIVGSIAMVPMLS 240

Query: 356 GSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSL 415
           GS+FCYQTQCLN++P+VIG SRVIGQ +LLS T+ Y+RYWKK+PLRKL+G VQILYASSL
Sbjct: 241 GSIFCYQTQCLNLDPTVIGCSRVIGQFVLLSGTMLYNRYWKKIPLRKLIGMVQILYASSL 300

Query: 416 LLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFS 475
           LLD ILV+QINL++G+PNEVF LC +GLAE +AQFKLLPFS+L A LCP+GCEGSLT+F 
Sbjct: 301 LLDFILVKQINLKWGIPNEVFALCCSGLAEVVAQFKLLPFSVLFANLCPKGCEGSLTAFL 360

Query: 476 ASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETII 535
           ASALCLSSIAS FLGVG AS  GIT  DYS L  GI++QF+AAL+PL WIH++PMS++ +
Sbjct: 361 ASALCLSSIASAFLGVGFASCLGITSSDYSGLTWGILVQFIAALIPLRWIHSLPMSQS-V 419

Query: 536 EKGRKRGLSRRTRKNRRVGRVVIGSIFIYRRERE 569
           EK RKR +SRR R+NRRVG+VV G + +YR ERE
Sbjct: 420 EKQRKRSMSRRARRNRRVGKVVFGYVDVYRPERE 453

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102267|ref|XP_002312615.1| predicted protein [Populus trichocarpa] gi|222852435|gb|EEE89982.1| predicted protein [Populus trichocarpa]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 309/411 (75%), Positives = 357/411 (86%)

Query: 163 MVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSN 222
           MVAKPLYG+LSDA YIGGAHR+PYI +GVFLQ+L WGPLAL PVA +ALP L++C+L+SN
Sbjct: 1   MVAKPLYGLLSDAFYIGGAHRVPYILMGVFLQVLGWGPLALIPVAREALPILISCILISN 60

Query: 223 LGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLV 282
           LGASITEVA DALV EYGQKN I GLQSYAFMA A GGILGNL GG FL KTPP TMFLV
Sbjct: 61  LGASITEVANDALVTEYGQKNRIGGLQSYAFMALAVGGILGNLLGGCFLQKTPPQTMFLV 120

Query: 283 FAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLT 342
           F+VLLSLQLA S   RE+SLGL + S  N+   SI ++ +KQ SDL   + E+SIS+PLT
Sbjct: 121 FSVLLSLQLATSSIVREKSLGLLEPSNHNLVKTSIWENTRKQLSDLKTALNEDSISHPLT 180

Query: 343 WLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRK 402
           W+VAS+A VPVLSGS+FCYQTQCL+++PS+IGMSRVIGQ MLLS+TV YDRYWK+VP+RK
Sbjct: 181 WIVASIATVPVLSGSIFCYQTQCLHLDPSIIGMSRVIGQIMLLSMTVLYDRYWKEVPMRK 240

Query: 403 LVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARL 462
           LVGAVQ LYASSLLLD +LVRQINL+ G+ NEVF  CF+GL+E LAQFKLLPFS+LLA L
Sbjct: 241 LVGAVQFLYASSLLLDFVLVRQINLKLGISNEVFACCFSGLSEILAQFKLLPFSLLLASL 300

Query: 463 CPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPL 522
           CPQGCEGSLTSF AS+LCLSSI SGFLGVGLASL GIT GDYSSLP+GI+IQF AALLPL
Sbjct: 301 CPQGCEGSLTSFLASSLCLSSIVSGFLGVGLASLIGITSGDYSSLPMGILIQFFAALLPL 360

Query: 523 IWIHNVPMSETIIEKGRKRGLSRRTRKNRRVGRVVIGSIFIYRRERESEAQ 573
            WIH VPMSE I+EK RK+G+S+RTRKNRRVGRV++GSI++YRRERES++Q
Sbjct: 361 GWIHRVPMSEPIVEKERKQGMSKRTRKNRRVGRVLLGSIYVYRRERESDSQ 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510324|ref|XP_003523889.1| PREDICTED: uncharacterized protein LOC100813622 [Glycine max]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 342/570 (60%), Positives = 428/570 (75%), Gaps = 40/570 (7%)

Query: 6   VSTENQFITIIPKVPRFQKS-----SLKPVLCSSLNNRIHNNDNNSSSSRGSNSVSKFLN 60
           +S++N  +  +P++ + +K      +L+P+ C        N  N +S+S  +N  +   N
Sbjct: 5   ISSQNPLVRSMPRIHKHRKKPSLPPNLRPITC------FQNYSNPNSNSAVNNRPTFTAN 58

Query: 61  SSTKAKTAHVLVTTTESSSVSLKESKRLGSWAGGGGDEERRRDFGEVG-INNFNKQMLVL 119
           + T+    HV V                                  VG  N+ N+QM++L
Sbjct: 59  TVTR----HVFVKEKYEEKERE-----------------------FVGYCNSSNRQMMLL 91

Query: 120 CGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIG 179
           CGLGYWVQGFRCFPWLALNFHMA NL+LHPSTLQLVQN  N+PMVAKPLYGILSDA+YI 
Sbjct: 92  CGLGYWVQGFRCFPWLALNFHMAGNLNLHPSTLQLVQNFANIPMVAKPLYGILSDAIYIK 151

Query: 180 GAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEY 239
           GAHRIPY+ IG  LQ+ SW  LAL PVA K LPNL+A VLLSN GASITEVA+DALVAEY
Sbjct: 152 GAHRIPYVVIGGLLQVFSWSLLALVPVAHKVLPNLIASVLLSNFGASITEVAQDALVAEY 211

Query: 240 GQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSARE 299
           G+K+ I GLQSYAFMA A+GGILGNL GGYFLLK PP  +F +F+ LLSLQLAISFS RE
Sbjct: 212 GKKHKIGGLQSYAFMALAAGGILGNLIGGYFLLKLPPRIIFFIFSSLLSLQLAISFSTRE 271

Query: 300 ESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMF 359
           ESLG+AQ+S QN+A +SI+++IK Q SDL+  I ++SIS PL W+V S+AMVP+LSGS+F
Sbjct: 272 ESLGIAQLSAQNLAKRSISENIKNQVSDLVMAISDKSISKPLVWIVGSIAMVPMLSGSIF 331

Query: 360 CYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDL 419
           CYQTQ L ++P+VIG SRVIGQ  LLS TV Y+ YWKK+P R+L+G VQ+LYASSLLLDL
Sbjct: 332 CYQTQRLYLDPTVIGCSRVIGQFALLSGTVLYNHYWKKIPPRRLIGMVQVLYASSLLLDL 391

Query: 420 ILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASAL 479
           +LV QINL++G+ N+VF LCF+GLAE +AQFKLLPFS+L A LCP+GCEGSL +F ASAL
Sbjct: 392 VLVNQINLKWGIQNDVFALCFSGLAEVVAQFKLLPFSVLFANLCPKGCEGSLAAFLASAL 451

Query: 480 CLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKGR 539
           C+SSIAS FLGVGLAS  GIT GDYS L  GI++QF+AAL+PL WIH++PM++ ++EK R
Sbjct: 452 CVSSIASAFLGVGLASCLGITSGDYSGLTRGILVQFIAALVPLRWIHSLPMTQ-LVEKRR 510

Query: 540 KRGLSRRTRKNRRVGRVVIGSIFIYRRERE 569
           +R +SR+ R+NRRVG+VV+G + +YR ERE
Sbjct: 511 RRSMSRKARRNRRVGKVVLGYVNVYRPERE 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766856|emb|CAN69681.1| hypothetical protein VITISV_003774 [Vitis vinifera]

 Score =  603 bits (1554), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 335/567 (59%), Positives = 405/567 (71%), Gaps = 48/567 (8%)

Query: 1   MISSRVSTENQFITIIPKV----PRFQKSSLKPVLCSSLNNRIHNNDNNSSSSRGSNSVS 56
           MI   +S       I P V    P+     +KPV CS+     H+ + N+          
Sbjct: 1   MIFPSISVRAPLNPITPSVLKPPPKPSLFRVKPVHCSN-----HHQNPNA---------- 45

Query: 57  KFLNSSTKAKTAHVLVTTTESSSVSLKESKRLGSWAGGGGDEERRRDFGEVGINNFNKQM 116
             ++ S K  T  +   T  +  V+ K  K+        GDEERR    +VG    ++QM
Sbjct: 46  --VDKSVKLTTHLIHHITVATELVNKKHGKK------NSGDEERRESSFQVG----SRQM 93

Query: 117 LVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDAL 176
           L LCG GY VQGFRCFPWLALNFHMAHNL L PS +Q+VQN GNLPMVAKPL+GILSDA 
Sbjct: 94  LGLCGFGYGVQGFRCFPWLALNFHMAHNLRLDPSMMQIVQNIGNLPMVAKPLFGILSDAF 153

Query: 177 YIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALV 236
           YIGGAHRIPYI +G                  +AL  LM CVLLSNLGASITEVA+DALV
Sbjct: 154 YIGGAHRIPYIFLG-----------------GEALATLMLCVLLSNLGASITEVAQDALV 196

Query: 237 AEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFS 296
           AEYGQK+   GLQSYAFMA A+GGILGNLFGGYFL  T P TMFLVFA+LL  Q+A+S +
Sbjct: 197 AEYGQKHRKGGLQSYAFMAVAAGGILGNLFGGYFLQNTQPNTMFLVFAILLLFQVAVSLT 256

Query: 297 AREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSG 356
            +E+SLGL Q   QN+  KSI + +++QFS+L+ TI E+ I  PL W+VAS+AMVP+LSG
Sbjct: 257 TKEDSLGLPQPVDQNLVGKSIFEGVREQFSNLMTTISEDGICRPLAWVVASIAMVPILSG 316

Query: 357 SMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLL 416
            +FCYQTQCL ++PS IGMSRV+ Q MLLS TV Y+++WK++P+RKL+G VQILYASSLL
Sbjct: 317 PIFCYQTQCLCLDPSTIGMSRVVSQLMLLSATVLYNQFWKRIPMRKLIGTVQILYASSLL 376

Query: 417 LDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSA 476
           LDL+LVRQINL  G+PN+VF LCF+G+AET+AQFKLLPFS+L A LCP GCEGSLTSF A
Sbjct: 377 LDLVLVRQINLSLGIPNQVFALCFSGVAETIAQFKLLPFSVLFASLCPSGCEGSLTSFLA 436

Query: 477 SALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIE 536
           SA CLSSI SG  G GLASL GI  GDYSSLPVGI+IQFLAAL+PL W+H VPM +   E
Sbjct: 437 SAFCLSSIFSGVFGAGLASLIGIIGGDYSSLPVGILIQFLAALVPLGWMHLVPMVDPTAE 496

Query: 537 KGRKRGLSRRTRKNRRVGRVVIGSIFI 563
           K RK+G S+R+R+NRRVGRV + SI++
Sbjct: 497 KERKKGTSKRSRRNRRVGRVALDSIYV 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410591668|sp|O22780.2|FBT9_ARATH RecName: Full=Probable folate-biopterin transporter 9, chloroplastic; Flags: Precursor

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 307/520 (59%), Positives = 382/520 (73%), Gaps = 14/520 (2%)

Query: 59  LNSSTKAKTAHVLVTTTESSSVSLKESKRLGSWAGGGGDEERRRDFGEVGINNFNK---- 114
           LN++   K  H      +S ++ +K +KR  +         RRR+    G     K    
Sbjct: 25  LNTTINKKQKH------QSKTLVVKSNKRSTTSLTSSVSLVRRRNNNGDGETTLVKKVGR 78

Query: 115 ----QMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYG 170
               Q ++LC LGYWVQG RCF WLALNFHMAH L+L PSTLQLVQ + +LPMVAKPLYG
Sbjct: 79  DEKGQTVLLCALGYWVQGLRCFSWLALNFHMAHCLNLKPSTLQLVQYTASLPMVAKPLYG 138

Query: 171 ILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEV 230
           +LSD LYIGGA R+PYI +GV LQ L+WG LA+FP A + LP+LMA +LLSNLGASITEV
Sbjct: 139 VLSDVLYIGGARRVPYISVGVLLQGLAWGSLAIFPGAREVLPSLMAFILLSNLGASITEV 198

Query: 231 AKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQ 290
           ++DALVAEYG +  I GLQSYA MA+A GGILGNL GGY LLKTPP  +FL F  LLSLQ
Sbjct: 199 SQDALVAEYGLRYQINGLQSYALMASAVGGILGNLLGGYCLLKTPPRILFLAFTALLSLQ 258

Query: 291 LAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAM 350
           L +S S++EES+ L ++        S+   +KKQF DL   +  + IS PL W+V+S+A+
Sbjct: 259 LIVSLSSKEESVNLPRIGEVTPEISSVLGIVKKQFLDLKGIVQVDEISQPLIWIVSSIAL 318

Query: 351 VPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQIL 410
           VP+LSGS+FCYQTQ LN++PSVIGMS+VIGQ MLL LTV YDRYWKK+P+R L+  VQ+L
Sbjct: 319 VPLLSGSVFCYQTQVLNLDPSVIGMSKVIGQLMLLCLTVVYDRYWKKLPMRALIHIVQLL 378

Query: 411 YASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGS 470
           YA SLL D ILV+QINL FG+ N  FVLCF+ +AE LAQFK+LPFS+LLA +CP GCEGS
Sbjct: 379 YAFSLLFDYILVKQINLAFGISNTAFVLCFSSVAEILAQFKILPFSVLLANMCPGGCEGS 438

Query: 471 LTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPM 530
           +TSF AS LCLSS+ SGF GVG+A++ GIT  +YS+LP GI+IQ LAAL+PL +IH VPM
Sbjct: 439 ITSFLASTLCLSSVVSGFTGVGMANMIGITSKNYSNLPAGILIQSLAALVPLWFIHYVPM 498

Query: 531 SETIIEKGRKRGLSRRTRKNRRVGRVVIGSIFIYRRERES 570
            E   E+  KR +S+++R+NRRVGRV+    F YRRERE+
Sbjct: 499 LEPGFEREGKRAMSKKSRRNRRVGRVIGQESFAYRRERET 538

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	574
TAIR|locus:2197803	542	AT1G04570 "AT1G04570" [Arabido	0.790	0.837	0.585	5.2e-136
TAIR|locus:2051078	538	AT2G33280 "AT2G33280" [Arabido	0.794	0.847	0.570	6.2e-133
TAIR|locus:2010911	442	AT1G64890 "AT1G64890" [Arabido	0.717	0.932	0.421	6.6e-81
TAIR|locus:2160150	491	AT5G54860 "AT5G54860" [Arabido	0.329	0.384	0.393	1.7e-50
TAIR|locus:2045462	560	AT2G32040 "AT2G32040" [Arabido	0.698	0.716	0.265	7.9e-34
UNIPROTKB|Q55721	494	slr0642 "Folate-biopterin tran	0.702	0.815	0.235	4.1e-21
GENEDB_PFALCIPARUM|MAL8P1.13	505	MAL8P1.13 "integral membrane p	0.682	0.776	0.238	3.7e-15
UNIPROTKB|Q8IBB7	505	MAL8P1.13 "Folate/biopterin tr	0.682	0.776	0.238	3.7e-15
TAIR|locus:2017814	497	AT1G79710 "AT1G79710" [Arabido	0.675	0.780	0.217	4.8e-14
TAIR|locus:2179285	499	AT5G25050 "AT5G25050" [Arabido	0.668	0.769	0.220	8.1e-14

TAIR|locus:2197803 AT1G04570 "AT1G04570" [Arabidopsis thaliana (taxid:3702)]

 Score = 1332 (473.9 bits), Expect = 5.2e-136, P = 5.2e-136
 Identities = 268/458 (58%), Positives = 323/458 (70%)

Query:   114 KQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILS 173
             K + VLCGLGYWVQG RCFPWLALNFHM H+L+L PSTLQLVQ S +LPMVAKPLYG+LS
Sbjct:    85 KGISVLCGLGYWVQGSRCFPWLALNFHMVHSLALQPSTLQLVQYSCSLPMVAKPLYGVLS 144

Query:   174 DALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKD 233
             D LYIG   R+PYI IGVFLQ+L+WG + +F  A + LP+L+ACVLLSNLGASITEVAKD
Sbjct:   145 DVLYIGSGRRVPYIAIGVFLQVLAWGSMGIFQGAREVLPSLVACVLLSNLGASITEVAKD 204

Query:   234 ALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI 293
             ALVAEYG +  I GLQSYA MA+A+GG+LGNL GGY LL TPP   FLVF+ LLSLQL +
Sbjct:   205 ALVAEYGLRYRINGLQSYALMASAAGGVLGNLLGGYLLLTTPPKISFLVFSALLSLQLVV 264

Query:   294 SFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPV 353
             S S++EES GL +++     + S+ +S+KKQ S+L   I  + IS PL W V S+AMVP+
Sbjct:   265 SLSSKEESFGLPRIA----ETSSVLESVKKQISNLKEAIQADEISQPLIWAVVSIAMVPL 320

Query:   354 LSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQXXXXX 413
             LSGS+FCYQTQ LN++PSVIGMS+VIGQ MLL LTV YDRY K +P+R L+  +Q     
Sbjct:   321 LSGSVFCYQTQVLNLDPSVIGMSKVIGQLMLLCLTVVYDRYLKTLPMRPLIHIIQLLYGL 380

Query:   414 XXXXXXXXXXXXXXQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGXXXX 473
                            FG+ NEV+VLCF+ LAE LAQFK+LPF++ LA +CPQGCEG    
Sbjct:   381 SILLDYILVKQINLGFGISNEVYVLCFSSLAEILAQFKILPFAVRLASMCPQGCEGSVTS 440

Query:   474 XXXXXXXXXXXXXGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSET 533
                           FLGVGLA+L GIT  +YS+L  GI+IQ LAAL PL ++H VPMSE 
Sbjct:   441 FLASTLCLSQIVSAFLGVGLANLIGITSSNYSNLSSGILIQSLAALAPLCFMHLVPMSEP 500

Query:   534 IIEKGRKRGLSXXXXXXXXXXXXXIGSIFIYRRERESE 571
             +IEK  KRG+S                   YRRERESE
Sbjct:   501 VIEKEGKRGISKRSRRNRRVGRVVDKESVTYRRERESE 538

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2051078 AT2G33280 "AT2G33280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1303 (463.7 bits), Expect = 6.2e-133, P = 6.2e-133
 Identities = 260/456 (57%), Positives = 317/456 (69%)

Query:   115 QMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSD 174
             Q ++LC LGYWVQG RCF WLALNFHMAH L+L PSTLQLVQ + +LPMVAKPLYG+LSD
Sbjct:    83 QTVLLCALGYWVQGLRCFSWLALNFHMAHCLNLKPSTLQLVQYTASLPMVAKPLYGVLSD 142

Query:   175 ALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDA 234
              LYIGGA R+PYI +GV LQ L+WG LA+FP A + LP+LMA +LLSNLGASITEV++DA
Sbjct:   143 VLYIGGARRVPYISVGVLLQGLAWGSLAIFPGAREVLPSLMAFILLSNLGASITEVSQDA 202

Query:   235 LVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS 294
             LVAEYG +  I GLQSYA MA+A GGILGNL GGY LLKTPP  +FL F  LLSLQL +S
Sbjct:   203 LVAEYGLRYQINGLQSYALMASAVGGILGNLLGGYCLLKTPPRILFLAFTALLSLQLIVS 262

Query:   295 FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVL 354
              S++EES+ L ++        S+   +KKQF DL   +  + IS PL W+V+S+A+VP+L
Sbjct:   263 LSSKEESVNLPRIGEVTPEISSVLGIVKKQFLDLKGIVQVDEISQPLIWIVSSIALVPLL 322

Query:   355 SGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQXXXXXX 414
             SGS+FCYQTQ LN++PSVIGMS+VIGQ MLL LTV YDRYWKK+P+R L+  VQ      
Sbjct:   323 SGSVFCYQTQVLNLDPSVIGMSKVIGQLMLLCLTVVYDRYWKKLPMRALIHIVQLLYAFS 382

Query:   415 XXXXXXXXXXXXXQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGXXXXX 474
                           FG+ N  FVLCF+ +AE LAQFK+LPFS+LLA +CP GCEG     
Sbjct:   383 LLFDYILVKQINLAFGISNTAFVLCFSSVAEILAQFKILPFSVLLANMCPGGCEGSITSF 442

Query:   475 XXXXXXXXXXXXGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETI 534
                         GF GVG+A++ GIT  +YS+LP GI+IQ LAAL+PL +IH VPM E  
Sbjct:   443 LASTLCLSSVVSGFTGVGMANMIGITSKNYSNLPAGILIQSLAALVPLWFIHYVPMLEPG 502

Query:   535 IEKGRKRGLSXXXXXXXXXXXXXIGSIFIYRRERES 570
              E+  KR +S                 F YRRERE+
Sbjct:   503 FEREGKRAMSKKSRRNRRVGRVIGQESFAYRRERET 538

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2010911 AT1G64890 "AT1G64890" [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 181/429 (42%), Positives = 252/429 (58%)

Query:   119 LCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYI 178
             L G G++VQGFR FPWL  NF +   L ++PS LQL+QNS NLPMVAKP+YG++SD++Y 
Sbjct:    22 LLGFGFFVQGFRGFPWLGANFFLTEQLRVNPSVLQLLQNSANLPMVAKPIYGVVSDSVYF 81

Query:   179 GGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAE 238
              G HRIPYI +G  LQ +SW  +A    +  ++  L   +LLSNLGAS+ EVA DA+VAE
Sbjct:    82 FGQHRIPYIAVGALLQAISWLAIAFLSRSNVSILALSIYLLLSNLGASLVEVANDAIVAE 141

Query:   239 YG-QKNGIV--G-LQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS 294
              G QK      G L S+ +M ++ GGILGNL GG  +      + FLVF +L  LQ  ++
Sbjct:   142 SGKQKTSETQSGELPSFVWMVSSLGGILGNLLGGIAIKTFSAQSTFLVFGILALLQFLVT 201

Query:   295 FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVL 354
              + RE+SL L +       + S A  I+K  SDL   + +  ISY + W+  S A+VPVL
Sbjct:   202 INIREKSLNLPE-------NPSPAGGIRKHLSDLSHVLRKPEISYSIAWIAVSTAVVPVL 254

Query:   355 SGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQXXXXXX 414
             +G+MF YQT+ L I+ S++G+S+V GQ  +L     Y+R+ K +  RKL+ A+Q      
Sbjct:   255 TGTMFFYQTKFLKIDASLLGISKVFGQIAMLLWGFAYNRWLKAMRPRKLLTAIQVTIAFF 314

Query:   415 XXXXXXXXXXXXXQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGXXXXX 474
                            GV + V+VL F+G  ETL  FK+LPF++L+ARLCP GCEG     
Sbjct:   315 VISDLLFVKGVYRDLGVSDSVYVLFFSGFLETLFYFKILPFTVLMARLCPPGCEGSLMAF 374

Query:   475 XXXXXXXXXXXXGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLI---WIHNVPMS 531
                         G+LG+ LAS  G+T  D+S    G+ I+     +PLI   WI++   +
Sbjct:   375 VMSAIALAFIVSGYLGIVLASFVGVTEDDFSGFTRGLAIEACCVGIPLILTSWIYDE--A 432

Query:   532 ETIIEKGRK 540
             ET  EK +K
Sbjct:   433 ETK-EKSKK 440

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2160150 AT5G54860 "AT5G54860" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.7e-50, Sum P(2) = 1.7e-50
 Identities = 76/193 (39%), Positives = 107/193 (55%)

Query:   112 FNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGI 171
             F    L L  L Y+ QGFR F W A+++ +   L L PS  Q V +    P   KPLYGI
Sbjct:    12 FGVAFLWLVCLIYFTQGFRSFVWTAVSYQLKDRLQLSPSASQFVFSVAFFPWSIKPLYGI 71

Query:   172 LSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVA 231
             +SD + IGG  R PY+ I   L ++ W  L L   +  +   LM  + + NLG+++ +V 
Sbjct:    72 ISDCIPIGGKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLTVQNLGSAMADVV 131

Query:   232 KDALVAEYG--QKNGIVG-LQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLS 288
              DA++AE    +K    G LQS ++ A A GG+ G+L GGY L      T+FL+F VL +
Sbjct:   132 IDAMIAEAVRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKIETIFLLFTVLPA 191

Query:   289 LQLAISFSAREES 301
             LQL +S +  EES
Sbjct:   192 LQL-LSCALVEES 203

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2045462 AT2G32040 "AT2G32040" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 7.9e-34, P = 7.9e-34
 Identities = 109/411 (26%), Positives = 185/411 (45%)

Query:   118 VLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALY 177
             V   + Y+VQG      LA++F++  +L L P+   ++    +LP + KPLYG +SD++ 
Sbjct:   128 VAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVITGLSSLPWLVKPLYGFISDSVP 187

Query:   178 IGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVA 237
             + G  R  Y+ +   L   SW  +A F V +K   +   C+LL +L  + ++V  D++V 
Sbjct:   188 LFGYRRRSYLVLSGLLGAFSWSLMAGF-VDSKY--SAAFCILLGSLSVAFSDVVVDSMVV 244

Query:   238 EY--GQKNGIVG-LQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS 294
             E   G+   + G LQS  + ++A GGI+ + F G  +       +F V A+L  +  A++
Sbjct:   245 ERARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGVTALLPLITSAVA 304

Query:   295 FSAREESLGL-AQVSYQNVA--SKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMV 351
                 E+ +   A    +N+   S    Q+ K+    L   I + ++  P  ++    A  
Sbjct:   305 VLVNEQRVVRPASGQKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFLPTLFIFLWQA-T 363

Query:   352 PVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQXXX 411
             P    +MF + T  L   P  +G  +++     L     Y+ + K VPLRK+        
Sbjct:   364 PHSDSAMFYFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPLRKIFLVTTIFG 423

Query:   412 XXXXXXXXXXXXXXXXQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGXX 471
                             Q G+ +E F +  + +   LAQ   +P  +L ARLCP+G E   
Sbjct:   424 TGLGMTQVILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAARLCPEGMEATL 483

Query:   472 XXXXXXXXXXXXXXXGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPL 522
                            G +G GL    GIT   + +L   I++  L++LLPL
Sbjct:   484 FATLMSISNGGSVLGGLMGAGLTQAFGITRDSFGNLSTLIILCNLSSLLPL 534

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0008517 "folic acid transporter activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0015231 "5-formyltetrahydrofolate transporter activity" evidence=IDA

GO:0015350 "methotrexate transporter activity" evidence=IDA

GO:0051958 "methotrexate transport" evidence=IDA

UNIPROTKB|Q55721 slr0642 "Folate-biopterin transporter" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 272 (100.8 bits), Expect = 4.1e-21, P = 4.1e-21
 Identities = 99/421 (23%), Positives = 172/421 (40%)

Query:   115 QMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSD 174
             ++L +  + Y+VQG      LA++F +   L L P+ +  +   G  P + KP+ G++SD
Sbjct:    35 ELLAILSI-YFVQGVLGLSRLAVSFFLKDELGLSPAAMGALIGLGAAPWILKPVLGLMSD 93

Query:   175 ALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDA 234
              + + G  R  Y+ +   +    W   A + V++     L+  +L ++L  +I +V  D+
Sbjct:    94 TVPLFGYRRRSYLWLSGLMGSAGWLLFAAW-VSSGTQAGLV--LLFTSLSVAIGDVIVDS 150

Query:   235 LVAEYGQKNGI--VG-LQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQL 291
             LV E  Q+  +  VG LQS  + AAA GGI+     G  L      T+F + A+   L +
Sbjct:   151 LVVERAQRESLAQVGSLQSLTWGAAAVGGIITAYASGALLEWFSTRTVFAITAIFPLLTV 210

Query:   292 AISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMV 351
               +F   E S    +   Q  A   +     +Q + L+ T+      +   W        
Sbjct:   211 GAAFLISEVSTAEEEEKPQPKAQIKLVWQAVRQKTILLPTL------FIFFWQAT----- 259

Query:   352 PVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQXXX 411
             P    + F + T  L   P  +G  R++     L     Y R+ K +P R ++G      
Sbjct:   260 PSAESAFFYFTTNELGFEPKFLGRVRLVTSVAGLIGVGLYQRFLKTLPFRVIMGWSTVIS 319

Query:   412 XXXXXXXXXXXXXXXXQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGXX 471
                               G+ +  F L  + +     Q   +P  +L ARLCP G E   
Sbjct:   320 SLLGLTTLILITHANRAMGIDDHWFSLGDSIILTVTGQIAFMPVLVLAARLCPPGIEATL 379

Query:   472 XXXXXXXXXXXXXXXGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMS 531
                              +G  L    G+T   + +L + ++I  L+ LLPL ++  +P  
Sbjct:   380 FALLMSVMNLAGVLSFEVGSLLTHWLGVTETQFDNLALLVIITNLSTLLPLPFLGLLPAG 439

Query:   532 E 532
             +
Sbjct:   440 D 440

GO:0008517 "folic acid transporter activity" evidence=IDA

GO:0015231 "5-formyltetrahydrofolate transporter activity" evidence=IMP;IDA

GO:0015350 "methotrexate transporter activity" evidence=IDA

GO:0015884 "folic acid transport" evidence=IDA

GO:0015885 "5-formyltetrahydrofolate transport" evidence=IMP;IDA

GO:0051958 "methotrexate transport" evidence=IDA

GENEDB_PFALCIPARUM|MAL8P1.13 MAL8P1.13 "integral membrane protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 220 (82.5 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 102/428 (23%), Positives = 182/428 (42%)

Query:   112 FNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGI 171
             FNK    L  +   +QG      L++ + +  N  LHP++L +V     +P   K ++ +
Sbjct:    52 FNKISSSLIAM---LQGVEVLCNLSIIYLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAV 108

Query:   172 LSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNL---GASIT 228
             +SD   I G  R  Y+ +G FL ILS   L L         NL   +LL  +   G+S+ 
Sbjct:   109 ISDNYPIFGYRRKYYLLLGSFLCILSLICLGLI-----THNNLFITILLLFIYFFGSSLC 163

Query:   229 EVAKDALVAEYGQKNGI-VGLQSYAFMAA---ASGGILGNLFGGYFLLKTPPTTMFLVFA 284
              V  +A V E  +   I    ++ +   A    S  I+  L  GY LL      +FL+ +
Sbjct:   164 NVIGEAQVVESNRNCSINSSARNVSLFFAFRKLSFAIMSYL-SGYLLLLISKKHIFLIGS 222

Query:   285 VLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWL 344
              L    + + F++     G   +  +N    SI   IK  +S +        +SY   ++
Sbjct:   223 FL---PICV-FTS-----GFFIIEKRNYTKSSIKDQIKCIYSII-------KLSYLKNFI 266

Query:   345 VASVAMV--PVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVF-YDRYWKKVPLR 401
             +    M+  P    ++F Y T  L  +P+++G   +  QS+   +++  Y  ++ K+ +R
Sbjct:   267 IFIFIMMSTPSCGNTLFFYITNELKFSPNLLGKMAMF-QSLASFISIISYMLFFTKIDIR 325

Query:   402 KLVGAVQXXXXXXXXXXXXXXXXXXXQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLAR 461
             KL+                          +PN +F +    L E +A+F+ +P  +L +R
Sbjct:   326 KLLLYSTIIITPFCLLPLVVIKKVNYFLFIPNTLFFITDTVLIEFIAEFQTMPILVLCSR 385

Query:   462 LCPQGCEGXXXXXXXXXXXXXXXXXGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLP 521
             L P+G E                   FL   L     IT  ++++LP  I+I  L  ++P
Sbjct:   386 LIPEGFESTIYSLLLSSNNFASIISSFLSSLLTYSLNITSTNFTNLPYMIIICCLTNIIP 445

Query:   522 LIWIHNVP 529
             + +++ +P
Sbjct:   446 IFFLYILP 453

GO:0016021 "integral to membrane" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IBB7 MAL8P1.13 "Folate/biopterin transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 220 (82.5 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 102/428 (23%), Positives = 182/428 (42%)

Query:   112 FNKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGI 171
             FNK    L  +   +QG      L++ + +  N  LHP++L +V     +P   K ++ +
Sbjct:    52 FNKISSSLIAM---LQGVEVLCNLSIIYLLKDNYHLHPASLSIVMCFIKIPWSIKLVWAV 108

Query:   172 LSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNL---GASIT 228
             +SD   I G  R  Y+ +G FL ILS   L L         NL   +LL  +   G+S+ 
Sbjct:   109 ISDNYPIFGYRRKYYLLLGSFLCILSLICLGLI-----THNNLFITILLLFIYFFGSSLC 163

Query:   229 EVAKDALVAEYGQKNGI-VGLQSYAFMAA---ASGGILGNLFGGYFLLKTPPTTMFLVFA 284
              V  +A V E  +   I    ++ +   A    S  I+  L  GY LL      +FL+ +
Sbjct:   164 NVIGEAQVVESNRNCSINSSARNVSLFFAFRKLSFAIMSYL-SGYLLLLISKKHIFLIGS 222

Query:   285 VLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWL 344
              L    + + F++     G   +  +N    SI   IK  +S +        +SY   ++
Sbjct:   223 FL---PICV-FTS-----GFFIIEKRNYTKSSIKDQIKCIYSII-------KLSYLKNFI 266

Query:   345 VASVAMV--PVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVF-YDRYWKKVPLR 401
             +    M+  P    ++F Y T  L  +P+++G   +  QS+   +++  Y  ++ K+ +R
Sbjct:   267 IFIFIMMSTPSCGNTLFFYITNELKFSPNLLGKMAMF-QSLASFISIISYMLFFTKIDIR 325

Query:   402 KLVGAVQXXXXXXXXXXXXXXXXXXXQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLAR 461
             KL+                          +PN +F +    L E +A+F+ +P  +L +R
Sbjct:   326 KLLLYSTIIITPFCLLPLVVIKKVNYFLFIPNTLFFITDTVLIEFIAEFQTMPILVLCSR 385

Query:   462 LCPQGCEGXXXXXXXXXXXXXXXXXGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLP 521
             L P+G E                   FL   L     IT  ++++LP  I+I  L  ++P
Sbjct:   386 LIPEGFESTIYSLLLSSNNFASIISSFLSSLLTYSLNITSTNFTNLPYMIIICCLTNIIP 445

Query:   522 LIWIHNVP 529
             + +++ +P
Sbjct:   446 IFFLYILP 453

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

TAIR|locus:2017814 AT1G79710 "AT1G79710" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 90/413 (21%), Positives = 171/413 (41%)

Query:   135 LALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQ 194
             ++  ++      + PS  Q+      +P + KPL+G+L+D + + G  R PY  +  FL 
Sbjct:    70 VSTQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDVVPVLGYRRRPYFILAGFLA 129

Query:   195 ILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVG--LQSYA 252
             ++S   L L      AL   ++C++  + G +I +V  DA V +    +  +   +QS  
Sbjct:   130 MISMMVLWLHTNLHLALA--LSCLVAGSAGVAIADVTIDACVTQCSISHPTLAADMQSLC 187

Query:   253 FMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREE---SLGLAQVSY 309
              + ++ G ++G    G  +       ++ +  V   L + +    +E    SLG   V+ 
Sbjct:   188 GLCSSIGSLVGFSLSGVLVHLVGSKGVYGLLGVTAGLLVVVGMVLKESPSRSLGRKHVND 247

Query:   310 QNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNIN 369
             + + + S   +I K F       GE  +  P  +++ S A+   +   MF + T   +  
Sbjct:   248 KFLDAGS---AIWKTFQ-----YGE--VWRPCLFMLLSAAVSLHIHEGMFYWYTDSKD-G 296

Query:   370 PS----VIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQXXXXXXXXXXXXXXXXX 425
             PS     +G     G    L   + Y  + K  P R +V                     
Sbjct:   297 PSFSKEAVGSIMSFGAIGSLVGILLYQNFLKNFPFRNVVFWALSLSVLSGFLDLILVLRI 356

Query:   426 XXQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGXXXXXXXXXXXXXXXX 485
               + G+P+  F++    ++  +++ K LP  +L ++LCP G EG                
Sbjct:   357 NLKLGLPDYFFIVVDEFVSHMISRIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLV 416

Query:   486 XGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLP--LIW-IHNVPMSETII 535
               + G  L     +T   + +L + IVI+ L  ++P  L++ I NV  + TI+
Sbjct:   417 SSWGGGVLLHALKVTRTQFDNLWLVIVIRSLLRVIPIGLVFLIPNVDSNSTIL 469

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2179285 AT5G25050 "AT5G25050" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 8.1e-14, P = 8.1e-14
 Identities = 90/408 (22%), Positives = 168/408 (41%)

Query:   135 LALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQ 194
             +A  ++M     + PS  Q +     +P + KPL+GIL+D L I G HR PY  +   L 
Sbjct:    66 VATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRPYFILAGVLG 125

Query:   195 ILSWGPLALFPVAAKALPNLMAC--VLLSNLGASITEVAKDALVAEYGQKNGIVG--LQS 250
             ++S     LF      L   +A   + +S+   +I +V  DA  A    K+  +   +QS
Sbjct:   126 VVS----LLFISLHSNLHLYLALFWMTISSAAMAIADVTIDACTAYNSIKHPSLASDMQS 181

Query:   251 YAFMAAASGGILGNLFGGYFLLKTPPTTMF--LVFAVLLSLQLAISFSAREESLGLAQVS 308
                ++++ G +LG    G  +       +F  L F   L   + I FS       +   S
Sbjct:   182 LCSLSSSIGALLGFFMSGILVHLVGSKGVFGLLTFPFALVSVVGIVFSEPH----VPGFS 237

Query:   309 YQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLN- 367
             Y+ V  K    + K  +     T+    +  P  ++  S+ +   +   +F + T   + 
Sbjct:   238 YKQVNQK-FTDAGKAMWR----TMKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDG 292

Query:   368 --INPSVIGMSRVIGQ-SMLLSLTVFYDRYWKKVPLRKLVGAVQXXXXXXXXXXXXXXXX 424
                    +G    IG    +L+ T+ Y    K  P R L    Q                
Sbjct:   293 PLFAQETVGFILSIGSIGSILAATL-YQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFR 351

Query:   425 XXXQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGXXXXXXXXXXXXXXX 484
                +FG+P+ +F++    +++ + + K +P  +L ++LCP G EG               
Sbjct:   352 LNLKFGLPDYLFIVVDEIVSQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLM 411

Query:   485 XXGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSE 532
                +LG  +  +  +T  ++ +L + ++++ +  LLPL ++  VP  +
Sbjct:   412 TSSWLGGIMLHVLKVTRTEFGNLWLAVLVRNVMRLLPLCFLFLVPKGD 459

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4I5Q2	FBT8_ARATH	No assigned EC number	0.6443	0.8188	0.8671	yes	no
O22780	FBT9_ARATH	No assigned EC number	0.5903	0.8815	0.9405	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.4666.1	hypothetical protein (470 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.3658.1	hypothetical protein (201 aa)			•						0.429
	eugene3.121720001	hypothetical protein (63 aa)			•						0.428
	estExt_fgenesh4_pg.C_LG_V0629	hypothetical protein (251 aa)			•						0.427
	gw1.II.1221.1	hypothetical protein (155 aa)			•						0.426
	gw1.29.56.1	hypothetical protein (278 aa)			•						0.426
	estExt_Genewise1_v1.C_LG_XIV1543	SubName- Full=Putative uncharacterized protein; (151 aa)			•						0.426
	gw1.II.1028.1	hypothetical protein (152 aa)			•						0.420
	gw1.XV.3200.1	hypothetical protein (265 aa)			•						0.419
	eugene3.00080706	hypothetical protein (213 aa)			•						0.419
	estExt_Genewise1_v1.C_1340217	hypothetical protein (132 aa)			•						0.419

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	574
TIGR00788	468	TIGR00788, fbt, folate/biopterin transporter	1e-107
pfam03092	425	pfam03092, BT1, BT1 family	1e-103
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04

>gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter

 Score =  330 bits (849), Expect = e-107
 Identities = 156/444 (35%), Positives = 234/444 (52%), Gaps = 12/444 (2%)

Query: 117 LVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDAL 176
           L +     +V+G      L L+  +  +L L  +  Q +    +L    KP  G++SD  
Sbjct: 28  LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTF 87

Query: 177 YIGGAHRIPYICI-GVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDAL 235
            + G  +  Y+ + G+    + +G L     +AK      A + L+ L  ++ +V  D+L
Sbjct: 88  PLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVA---AAFIFLAALAKALYDVLVDSL 144

Query: 236 VAEYGQKNGIVG--LQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI 293
            +E  +++   G  L S+ + A+A+GG++ +L GG  L KT    +FL+ A LL LQL +
Sbjct: 145 YSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV 204

Query: 294 SFSAREES------LGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVAS 347
           S  ++E        +G        + +  +  ++K Q   L   I    I+ PL ++  S
Sbjct: 205 SNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLS 264

Query: 348 VAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAV 407
            A +P  SGS+FC  TQCL   PS  GMS+V+G    L     YDR+ K  P R L G  
Sbjct: 265 YANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVT 324

Query: 408 QILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGC 467
            +LY  S L DLILV++ NL FG+ +EVFVL  + +AE LAQ K +PF +LLARLCP GC
Sbjct: 325 TLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC 384

Query: 468 EGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHN 527
           E S+ +  AS L L S  SGFLGV L    GIT  + ++L + I+   LA LLPL  +H 
Sbjct: 385 ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHL 444

Query: 528 VPMSETIIEKGRKRGLSRRTRKNR 551
           +P  E +I+   KR +S+   +NR
Sbjct: 445 LPRLEDVIDTEGKRAISKAAPENR 468

The Folate-Biopterin Transporter (FBT) Family (TC 2.A.71)The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity [Cell envelope, Other]. Length = 468

>gnl|CDD|111933 pfam03092, BT1, BT1 family

 Score =  318 bits (816), Expect = e-103
 Identities = 132/430 (30%), Positives = 196/430 (45%), Gaps = 13/430 (3%)

Query: 127 QGF-RCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIP 185
           QG       L+  F +   L + P+  Q +     LP V KP  G+LSD   + G  R P
Sbjct: 1   QGVAGGLSRLSTQFMLKDRLGIDPARYQRLSGLATLPWVIKPFTGVLSDGFALFGYRRRP 60

Query: 186 YICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGI 245
           Y+ +   L         L P    +     A + LS+LG ++ +V  DAL +E G++  +
Sbjct: 61  YLALSGLLGGAFALSYGLLPAKESSAAVAAAFIFLSSLGKALVDVLSDALYSERGRQEPL 120

Query: 246 VG--LQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSARE-ESL 302
            G  L S+ +  +A GGI+G++  G  L    P   FLV A L  L    +   +E E L
Sbjct: 121 AGPSLVSWIWGCSAVGGIIGSVLSGPLLDTFKPQISFLVTAALQLLTCVDAAVLKEEEVL 180

Query: 303 GLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYP-LTWLVASVAMVPVLSGSMFCY 361
           GL +          +    ++  S          I  P LTW+    A + +    MF Y
Sbjct: 181 GLGRP-----PVPCLLGLNREVISRNWKAFRYPEILAPTLTWISFWAAPLVIAKADMFYY 235

Query: 362 QTQCL---NINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLD 418
           QT  L   N + S  G  +VIG    L     Y+R+ KK P R   G   +L   S L D
Sbjct: 236 QTNELGGPNFSYSFYGTVKVIGSIAGLLGVTLYNRFLKKHPYRLTFGVTTVLQVLSGLFD 295

Query: 419 LILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASA 478
           LILV++ N   G+ + V++L  + + E L   K +PF +LLARLCP+G E ++ +  AS 
Sbjct: 296 LILVKRWNRYLGISDHVYILGDSIILEVLYMLKFMPFLVLLARLCPRGSESTVFALLASI 355

Query: 479 LCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKG 538
             L  I S  LG  L    G+T   +S+LP+ ++I  L  LLPL  +  +P S  I +K 
Sbjct: 356 ANLGQIVSSSLGALLMEYLGVTEDQFSNLPLLLLIGSLCTLLPLPLLGLLPPSARICDKD 415

Query: 539 RKRGLSRRTR 548
               + +   
Sbjct: 416 EDGKIVKDAA 425

Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters. One such protein, previously termed (and is still annotated as) ORFG, was shown to encode a biopterin transport protein using null mutants, thus being subsequently renamed BT1. The significant similarity of ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative transmembrane protein and another member of this family) was previously noted. This family also contains five putative Arabidopsis thaliana proteins of unknown function. In addition, it also contains two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). Length = 425

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 10/180 (5%)

Query: 117 LVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPM-VAKPLYGILSDA 175
           L+L  LG+++ G            +A +L L  S   L+ ++ +L   +   L G LSD 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 176 LYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDAL 235
                  R   + +G+ L  L    LA     A +L  L+    L  LG      A  AL
Sbjct: 61  F-----GRRRVLLLGLLLFALGSLLLAF----ASSLWLLLVGRFLLGLGGGALYPAAAAL 111

Query: 236 VAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISF 295
           +AE+                   G +LG L GG          +FL+ A+L  L   +  
Sbjct: 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLL 171

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	574
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	100.0
TIGR00788	468	fbt folate/biopterin transporter. The only functio	100.0
PRK03545	390	putative arabinose transporter; Provisional	99.96
PRK11010	491	ampG muropeptide transporter; Validated	99.96
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.96
PRK11902	402	ampG muropeptide transporter; Reviewed	99.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.95
PRK10489	417	enterobactin exporter EntS; Provisional	99.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.95
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
PRK11663	434	regulatory protein UhpC; Provisional	99.95
PRK10504	471	putative transporter; Provisional	99.95
TIGR00900	365	2A0121 H+ Antiporter protein.	99.95
PRK12307	426	putative sialic acid transporter; Provisional	99.95
TIGR00891	405	2A0112 putative sialic acid transporter.	99.94
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.94
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.94
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.94
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.94
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.94
PRK09669	444	putative symporter YagG; Provisional	99.94
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.94
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.94
TIGR00893	399	2A0114 d-galactonate transporter.	99.94
PRK03893	496	putative sialic acid transporter; Provisional	99.94
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.94
PRK10429	473	melibiose:sodium symporter; Provisional	99.94
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.94
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.94
PRK10091	382	MFS transport protein AraJ; Provisional	99.94
COG2211	467	MelB Na+/melibiose symporter and related transport	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.93
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.93
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.93
PRK05122	399	major facilitator superfamily transporter; Provisi	99.93
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
TIGR00901	356	2A0125 AmpG-related permease.	99.93
PRK09874	408	drug efflux system protein MdtG; Provisional	99.93
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.93
PRK09705	393	cynX putative cyanate transporter; Provisional	99.93
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.93
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.93
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.93
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.92
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.92
PLN00028	476	nitrate transmembrane transporter; Provisional	99.92
PRK15011	393	sugar efflux transporter B; Provisional	99.92
PRK09952	438	shikimate transporter; Provisional	99.92
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.92
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.92
PRK11462	460	putative transporter; Provisional	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.92
PRK12382	392	putative transporter; Provisional	99.92
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.92
TIGR00895	398	2A0115 benzoate transport.	99.91
PRK03699	394	putative transporter; Provisional	99.91
TIGR00898	505	2A0119 cation transport protein.	99.91
PRK11043	401	putative transporter; Provisional	99.91
PF13347	428	MFS_2: MFS/sugar transport protein	99.91
PRK10054	395	putative transporter; Provisional	99.91
PRK09848	448	glucuronide transporter; Provisional	99.91
PRK15075	434	citrate-proton symporter; Provisional	99.91
PRK09528	420	lacY galactoside permease; Reviewed	99.9
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.9
PRK03633	381	putative MFS family transporter protein; Provision	99.9
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.9
PRK10133	438	L-fucose transporter; Provisional	99.9
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.9
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.89
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.89
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.88
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.87
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.87
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.87
KOG0569	485	consensus Permease of the major facilitator superf	99.87
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.87
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.86
KOG0254	513	consensus Predicted transporter (major facilitator	99.85
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.85
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.84
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.84
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.83
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.83
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.82
KOG2615	451	consensus Permease of the major facilitator superf	99.81
KOG2533	495	consensus Permease of the major facilitator superf	99.8
KOG2532	466	consensus Permease of the major facilitator superf	99.79
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.79
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.78
TIGR00805	633	oat sodium-independent organic anion transporter.	99.78
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.77
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.77
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.73
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.73
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.73
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.71
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.7
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.7
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.68
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.66
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.58
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.54
PTZ00207	591	hypothetical protein; Provisional	99.53
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	99.52
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.49
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.49
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	99.45
KOG2532	466	consensus Permease of the major facilitator superf	99.45
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.43
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.28
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.19
PRK10642	490	proline/glycine betaine transporter; Provisional	99.18
KOG2563	480	consensus Permease of the major facilitator superf	99.18
PRK15011	393	sugar efflux transporter B; Provisional	99.17
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.11
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.1
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.09
PRK09528	420	lacY galactoside permease; Reviewed	99.07
TIGR00893	399	2A0114 d-galactonate transporter.	99.06
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.04
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.04
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.03
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.02
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.99
PRK10489	417	enterobactin exporter EntS; Provisional	98.99
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.99
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.98
PRK09952	438	shikimate transporter; Provisional	98.98
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.97
KOG3626	735	consensus Organic anion transporter [Secondary met	98.96
PRK11663	434	regulatory protein UhpC; Provisional	98.95
PRK03545	390	putative arabinose transporter; Provisional	98.94
PRK09874	408	drug efflux system protein MdtG; Provisional	98.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.9
PRK10054	395	putative transporter; Provisional	98.9
PRK05122	399	major facilitator superfamily transporter; Provisi	98.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.9
PRK03699	394	putative transporter; Provisional	98.89
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.89
PRK03633	381	putative MFS family transporter protein; Provision	98.86
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.86
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.84
PRK09705	393	cynX putative cyanate transporter; Provisional	98.83
PRK03893	496	putative sialic acid transporter; Provisional	98.82
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.82
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.82
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.82
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.82
PRK12382	392	putative transporter; Provisional	98.81
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.78
TIGR00891	405	2A0112 putative sialic acid transporter.	98.78
PRK11010	491	ampG muropeptide transporter; Validated	98.76
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.76
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.76
PRK10504	471	putative transporter; Provisional	98.75
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.74
KOG3762	618	consensus Predicted transporter [General function	98.73
PRK12307	426	putative sialic acid transporter; Provisional	98.69
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.69
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.69
TIGR00900	365	2A0121 H+ Antiporter protein.	98.69
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.68
TIGR00895	398	2A0115 benzoate transport.	98.67
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.67
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.63
PRK10091	382	MFS transport protein AraJ; Provisional	98.63
PRK15075	434	citrate-proton symporter; Provisional	98.62
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.62
PRK11043	401	putative transporter; Provisional	98.61
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.6
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.58
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.57
KOG0637	498	consensus Sucrose transporter and related proteins	98.57
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.57
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.55
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.54
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.54
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.53
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.51
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.5
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.45
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.45
PRK11902	402	ampG muropeptide transporter; Reviewed	98.45
TIGR00898	505	2A0119 cation transport protein.	98.44
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.43
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.43
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.43
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.43
PLN00028	476	nitrate transmembrane transporter; Provisional	98.42
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.41
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.4
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.39
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.39
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.38
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.37
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.36
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.35
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.34
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.34
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.33
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.33
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.33
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.33
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.32
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.29
TIGR00805	633	oat sodium-independent organic anion transporter.	98.28
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.28
PRK09848	448	glucuronide transporter; Provisional	98.27
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.25
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.25
KOG2615	451	consensus Permease of the major facilitator superf	98.19
TIGR00901	356	2A0125 AmpG-related permease.	98.15
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.14
KOG0569	485	consensus Permease of the major facilitator superf	98.13
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.12
PRK10133	438	L-fucose transporter; Provisional	98.1
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.08
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.06
PF13347	428	MFS_2: MFS/sugar transport protein	98.01
PTZ00207	591	hypothetical protein; Provisional	97.99
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.98
PRK09669	444	putative symporter YagG; Provisional	97.95
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.95
COG0477	338	ProP Permeases of the major facilitator superfamil	97.86
PRK11462	460	putative transporter; Provisional	97.74
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.73
PRK10429	473	melibiose:sodium symporter; Provisional	97.72
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.71
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.7
KOG2533	495	consensus Permease of the major facilitator superf	97.64
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.54
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.5
KOG3762	618	consensus Predicted transporter [General function	97.49
COG3202	509	ATP/ADP translocase [Energy production and convers	97.44
KOG0254	513	consensus Predicted transporter (major facilitator	97.37
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.37
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.34
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.34
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.33
COG2211	467	MelB Na+/melibiose symporter and related transport	97.26
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.19
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.94
KOG3810	433	consensus Micronutrient transporters (folate trans	96.92
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.84
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.75
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.58
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.51
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.48
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.4
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.21
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	96.13
KOG2563	480	consensus Permease of the major facilitator superf	96.11
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.05
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.99
KOG3880	409	consensus Predicted small molecule transporter inv	95.85
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.64
PF12832	77	MFS_1_like: MFS_1 like family	95.61
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.52
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	95.44
PRK03612	521	spermidine synthase; Provisional	94.4
COG3202	509	ATP/ADP translocase [Energy production and convers	94.06
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	93.78
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	93.75
KOG3626	735	consensus Organic anion transporter [Secondary met	93.7
PF12832	77	MFS_1_like: MFS_1 like family	93.65
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.49
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.48
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	93.29
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	92.95
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	92.62
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	92.45
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.09
PRK03612	521	spermidine synthase; Provisional	90.4
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	90.3
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	89.83
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	86.96
COG0477	338	ProP Permeases of the major facilitator superfamil	85.57
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	81.92
KOG0637	498	consensus Sucrose transporter and related proteins	81.64
COG1230	296	CzcD Co/Zn/Cd efflux system component [Inorganic i	81.56

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=100.00  E-value=5.2e-41  Score=359.22  Aligned_cols=415  Identities=30%  Similarity=0.457  Sum_probs=350.3

Q ss_pred             hhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccC
Q 008185          128 GFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPV  206 (574)
Q Consensus       128 ~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~  206 (574)
                      |+.. +...++.+++++++|+++.+.+...++..+||.++|++|.+||.+|++|+|||+|++++.++.+++...++..+.
T Consensus         2 G~~~~l~~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~   81 (433)
T PF03092_consen    2 GFAGGLSRLAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA   81 (433)
T ss_pred             ChhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc
Confidence            4444 677788889999999999999999999999999999999999999999999999999999988777776777665


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH
Q 008185          207 AAKALPNLMACVLLSNLGASITEVAKDALVAEYGQK--NGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFA  284 (574)
Q Consensus       207 ~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~--~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~a  284 (574)
                      ...+.....++.++..+|.+.+|+..+++++|..++  +.||..++..+....+|.++|..++|.+.+..++|+.|++.+
T Consensus        82 ~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~  161 (433)
T PF03092_consen   82 SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA  161 (433)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence            333455566778889999999999999999999854  458899999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhhhcccccccccccch---hcchhhhhhhhHHHHHHHHHHHHcchhhHHHHH-HHHhHhhhccccccc-ce
Q 008185          285 VLLSLQLAISFSAREESLGLAQVSY---QNVASKSIAQSIKKQFSDLIATIGEESISYPLT-WLVASVAMVPVLSGS-MF  359 (574)
Q Consensus       285 i~~~~~~~~~~~lpEt~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l-~~~l~~~~~~~~~~~-~~  359 (574)
                      ++..+..+..+++.|++....+.+.   ++..........+++.+++++.++.|.++.+.+ +.++ +...+....+ .+
T Consensus       162 ~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~a~~f  240 (433)
T PF03092_consen  162 ALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFF-FNLPPSISSASSF  240 (433)
T ss_pred             HHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHhccCCCCccEE
Confidence            8888777766544442211110000   000001112236778889999999999999988 6655 5555555555 67


Q ss_pred             eehccccC---CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceE
Q 008185          360 CYQTQCLN---INPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVF  436 (574)
Q Consensus       360 ~~~~~~~g---~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~  436 (574)
                      |+.++..+   +++...|...+.+.++.++|..++.++.++++.|+++.+++++.++..+..+.++.++|..+|+++.+|
T Consensus       241 y~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f  320 (433)
T PF03092_consen  241 YFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWF  320 (433)
T ss_pred             EEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEE
Confidence            77777777   999999999999999999999999999999999999999998888888877777788888889999999


Q ss_pred             EeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHH
Q 008185          437 VLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFL  516 (574)
Q Consensus       437 ~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~  516 (574)
                      .++...+.+..+++.++|..++++|+||++.||+.||+..++.|+|..++..++..+.+.++++.++|.+++..++++.+
T Consensus       321 ~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~  400 (433)
T PF03092_consen  321 ALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSV  400 (433)
T ss_pred             EEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 008185          517 AALLPLIWIHNVPMSETIIEKGRKRGL  543 (574)
Q Consensus       517 ~~ll~l~~~~~vp~~~~~~~~~~~~~~  543 (574)
                      +.++++.+++++|++++.+|+..+++.
T Consensus       401 ~~ll~l~ll~lLp~~~~~~~~~~~~~~  427 (433)
T PF03092_consen  401 IQLLPLPLLFLLPPQKRITDELDADGK  427 (433)
T ss_pred             HHHHHHHHHHHcCCCchhhHHHhhcCC
Confidence            999999999999999888887665553

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00788 fbt folate/biopterin transporter

Probab=100.00  E-value=2.1e-38  Score=343.26  Aligned_cols=410  Identities=35%  Similarity=0.483  Sum_probs=324.3

Q ss_pred             HHHHHHHHHhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhhhheeeccccccCCCccchhHhHHHHHH-HH
Q 008185          118 VLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQ-IL  196 (574)
Q Consensus       118 ~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~-~~  196 (574)
                      .++...|+.+|+..+...++.+++++++|+++++++...++..+||.++|+||+++|++|++|+|||+|++++.++. ++
T Consensus        29 ~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~  108 (468)
T TIGR00788        29 AIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAI  108 (468)
T ss_pred             HHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHH
Confidence            44666789999987677777889999999999999999999999999999999999999999999999999888776 34


Q ss_pred             HHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CccchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 008185          197 SWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKN--GIVGLQSYAFMAAASGGILGNLFGGYFLLKT  274 (574)
Q Consensus       197 ~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~--~rg~~~s~~~~~~~~G~~igp~igg~l~~~~  274 (574)
                      ++..++..++   ......+++++.+++.+..|+..+++++|..+++  .++.+++..+....+|.++|+.++|++.+..
T Consensus       109 ~~~~l~~~~~---~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~  185 (468)
T TIGR00788       109 LYGLLPGKVS---SAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT  185 (468)
T ss_pred             HHHhcccccc---hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4443333222   1333344778889999999999999999998732  2344666777777899999999999999989


Q ss_pred             ChhHHHHHHHHHHHHHHHHhhhcccccc-cccccchhcc---h--hhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHh
Q 008185          275 PPTTMFLVFAVLLSLQLAISFSAREESL-GLAQVSYQNV---A--SKSIAQSIKKQFSDLIATIGEESISYPLTWLVASV  348 (574)
Q Consensus       275 gwr~~f~i~ai~~~~~~~~~~~lpEt~~-~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~  348 (574)
                      +||.+|++.+++.++..+..+++||++. ...+..++..   .  .....+..++..++.++.+++|.++.++++.++.|
T Consensus       186 ~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~  265 (468)
T TIGR00788       186 LTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSY  265 (468)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence            9999999998888777555677888641 1111000000   0  00111223445566777788899998888777644


Q ss_pred             hhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 008185          349 AMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQ  428 (574)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~  428 (574)
                      ...+.....++++.++.+|+++.+.|+.....+++.+++..+++++.+|++.|+++.++.++.+++.+....+...++..
T Consensus       266 ~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~  345 (468)
T TIGR00788       266 ANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLA  345 (468)
T ss_pred             hhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccc
Confidence            44455555555566778999999999999999999999999999999999999999988888777665443344455544


Q ss_pred             cCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChh
Q 008185          429 FGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLP  508 (574)
Q Consensus       429 ~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~  508 (574)
                      .+.++.++++....+.....++.++|..+++++.+|++.+|+.+|+++++.++|..+++.++|.+.+.+|.+.++|++++
T Consensus       346 ~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~  425 (468)
T TIGR00788       346 FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLW  425 (468)
T ss_pred             cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchH
Confidence            55566667777777777777888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCC
Q 008185          509 VGIVIQFLAALLPLIWIHNVPM  530 (574)
Q Consensus       509 ~~~li~~~~~ll~l~~~~~vp~  530 (574)
                      ..++++.+..++++.+++++|+
T Consensus       426 ~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       426 LLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999998

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.96  E-value=4.6e-27  Score=249.10  Aligned_cols=349  Identities=14%  Similarity=0.029  Sum_probs=234.2

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|...+.+.++.+...... +..... +.+++++|+++.+.++..+++.+++.+ .+++|+++||+     +||+.+..+
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~   80 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-----ERRKLLIGL   80 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----ChHHHHHHH
Confidence            5654444555444432222 322223 356778999999999999999988765 77899999985     566677777


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++...+++.++    ++.++++|++.+++.+...+...+++.|..++++|++++++...+..+|.++||++++.+
T Consensus        81 ~~~~~~~~~~~~~~~~----~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l  156 (390)
T PRK03545         81 FVLFIASHVLSALAWN----FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI  156 (390)
T ss_pred             HHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence            7777777776666543    677888999988888777677788899999999999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhh
Q 008185          271 LLKTPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVA  349 (574)
Q Consensus       271 ~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~  349 (574)
                      .+..|||++|++.+++.++..+.. +++||++.+.          +   +.    .++.++.+++|.++......++...
T Consensus       157 ~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~----------~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~  219 (390)
T PRK03545        157 GQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH----------S---GS----LKSLPLLFRRPALVSLYLLTVVVVT  219 (390)
T ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC----------c---ch----HHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            988999999999988877665554 3466643210          0   00    1223345677776544333222111


Q ss_pred             hcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 008185          350 MVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQF  429 (574)
Q Consensus       350 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~  429 (574)
                      .........+.+..+.+|+++.+.+.......++.+++..+.+++.||+++|.+.. +..+.....+......       
T Consensus       220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~-------  291 (390)
T PRK03545        220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAA-------  291 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHh-------
Confidence            11111222233456678999999999888888899999999999999998765443 3333322222111110       


Q ss_pred             CcCcceEEeehhHHHHHHHHhhHHH-HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcc
Q 008185          430 GVPNEVFVLCFAGLAETLAQFKLLP-FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       430 ~~~~~~~~l~~~~l~~~~~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~  500 (574)
                        ++.+. +....+..+++.....+ ....+.+..| +.+|+++|+++...++|..+||.++|.+.+.+|+.
T Consensus       292 --~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~  359 (390)
T PRK03545        292 --NSEWH-LSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS  359 (390)
T ss_pred             --chHHH-HHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence              11111 11111111222222222 3455667766 57899999999999999999999999999988753

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.96  E-value=4.7e-27  Score=256.30  Aligned_cols=383  Identities=12%  Similarity=0.062  Sum_probs=254.6

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhhhheeecccc-ccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDAL-YIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~-~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +.+.+|.+++.. +....++.++++ .|++..+++.+ ++..+++..+|+||+++||+ +.+.+|||++++++.+..+++
T Consensus        17 ~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~-~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~   94 (491)
T PRK11010         17 LLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFF-SLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVA   94 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHH
Confidence            556667777766 566666666666 69999999986 55566777899999999995 222237777888787777777


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc-cCCh
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL-KTPP  276 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~-~~gw  276 (574)
                      ...+++.... .+++.+.+.+++.+++.+..++..++++.|..++++|+++.++...+..+|.++|+.+++++.+ ..||
T Consensus        95 ~~~~a~~~~~-~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW  173 (491)
T PRK11010         95 IAAMGFLEPG-TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW  173 (491)
T ss_pred             HHHHHHcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence            6666565322 2356677788888888999999999999999999999999999999999999999999999988 5799


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhc-cccc
Q 008185          277 TTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMV-PVLS  355 (574)
Q Consensus       277 r~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~-~~~~  355 (574)
                      |++|++.+++.++..+..+++||++....+  +     ++..+.   ...++++.++++..+...+..++ +... ....
T Consensus       174 r~~f~i~a~l~ll~~l~~~~~~e~~~~~~~--~-----~~~~~~---~~~~l~~~~~~~~~~~~ll~~~l-~~~~~~~~~  242 (491)
T PRK11010        174 QGMYWLMAALLIPCIIATLLAPEPTDTIPV--P-----KTLEQA---VVAPLRDFFGRNNAWLILLLIVL-YKLGDAFAM  242 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccccc--c-----cchhhh---HHHHHHHHHcCcCHHHHHHHHHH-HHHHHHHHH
Confidence            999999988776665555667886432110  0     000011   11233344566665544433332 2111 1111


Q ss_pred             ccceeehccccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcc
Q 008185          356 GSMFCYQTQCLNINPSVIGMSR-VIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNE  434 (574)
Q Consensus       356 ~~~~~~~~~~~g~s~~~~gl~~-i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~  434 (574)
                      ...+.|..+.+|+++.+.|+.. ..+.++.+++..+.+++.+|+++|+.+..+.++.++..+....+...      .++.
T Consensus       243 ~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~------~~~~  316 (491)
T PRK11010        243 SLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT------DKNL  316 (491)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc------cccH
Confidence            2223345567899999999986 56678899999999999999998887665544433332221111110      0111


Q ss_pred             eEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHH
Q 008185          435 VFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQ  514 (574)
Q Consensus       435 ~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~  514 (574)
                      +.......+.....++...+..++..+.++++..|+.+|+.++..++|..+++.+.|.+.+..|+.        ..+.+.
T Consensus       317 ~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~--------~~f~~~  388 (491)
T PRK11010        317 YSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWP--------TFYLFS  388 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHHHHH
Confidence            111111112122223334445677889999999999999999999999998888999999987742        234444


Q ss_pred             HHHHHHHHHHHHhcCC
Q 008185          515 FLAALLPLIWIHNVPM  530 (574)
Q Consensus       515 ~~~~ll~l~~~~~vp~  530 (574)
                      +++.+.+++...++++
T Consensus       389 ~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        389 VAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            4444444444444443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.5e-26  Score=236.77  Aligned_cols=366  Identities=17%  Similarity=0.078  Sum_probs=263.2

Q ss_pred             hhHHHHHHHHHHHhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHH
Q 008185          114 KQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVF  192 (574)
Q Consensus       114 ~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~  192 (574)
                      |..+..+.++.|+.+..-+.-..+.+.+.+|+|+|..++|+..++|.++..+ .|+...++||+     .||+.++....
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-----~Rr~lLl~~l~   86 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-----ERRRLLLGLLA   86 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----chHHHHHHHHH
Confidence            3344447777787777663333444467888999999999999999999877 89999999985     67788877777


Q ss_pred             HHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008185          193 LQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL  272 (574)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~  272 (574)
                      +++++..+.+++++    +..+++.|++.++..+.......+..+++.|+++|++++++...+..++.++|..+|.++-+
T Consensus        87 lFi~~n~l~alAp~----f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~  162 (394)
T COG2814          87 LFIVSNLLSALAPS----FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ  162 (394)
T ss_pred             HHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            88888887777764    78889999999998888888888899999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhc
Q 008185          273 KTPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMV  351 (574)
Q Consensus       273 ~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~  351 (574)
                      .+|||+.|++.+.++++..+.. ..+|  +.......             ....++..+.+++|.++...+..++.+...
T Consensus       163 ~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~-------------~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~  227 (394)
T COG2814         163 LFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSL-------------PGPLRTLLRLLRRPGVLLGLLATFLFMTGH  227 (394)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCC-------------CcchhHHHHHhcCchHHHHHHHHHHHHcch
Confidence            9999999999999998887765 5688  11111000             011223345678899988777666533322


Q ss_pred             ccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCc
Q 008185          352 PVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGV  431 (574)
Q Consensus       352 ~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~  431 (574)
                      +..++.+--+.++..|++....++..+..+++.++|..+.+|+.|| +.++.+....++.++..+... +..        
T Consensus       228 F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~-~~~--------  297 (394)
T COG2814         228 FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALT-FTG--------  297 (394)
T ss_pred             hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHH-Hhc--------
Confidence            2222222225678899999999999999999999999999999999 777777666555554443211 111        


Q ss_pred             CcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcC--CChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChh
Q 008185          432 PNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCP--QGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLP  508 (574)
Q Consensus       432 ~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p--~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~  508 (574)
                       ..........+   +.++...|. ..+..+..+  ++.++.+.+++.+..|+|.++|..+||.+.+.+|+.        
T Consensus       298 -~~~~~~~~~~~---~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~--------  365 (394)
T COG2814         298 -ASPALALALLF---LWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYA--------  365 (394)
T ss_pred             -chHHHHHHHHH---HHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--------
Confidence             11111111111   122223332 333334433  578899999999999999999999999999997753        


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008185          509 VGIVIQFLAALLPLIWI  525 (574)
Q Consensus       509 ~~~li~~~~~ll~l~~~  525 (574)
                      ....+++++.++++.+.
T Consensus       366 ~~~~~~a~l~~~a~~~~  382 (394)
T COG2814         366 ATGWVGAALLLLALLLA  382 (394)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            23344444444444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.96  E-value=4.9e-26  Score=244.46  Aligned_cols=386  Identities=17%  Similarity=0.114  Sum_probs=252.6

Q ss_pred             hhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccc--h
Q 008185          134 WLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAK--A  210 (574)
Q Consensus       134 ~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~--~  210 (574)
                      ...+.+++.+++|+++.++|++.++..+..++ +|+.|+++||+..+.+||||+++.+..+.+++..++...++...  .
T Consensus        19 ~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~   98 (437)
T TIGR00792        19 STYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGK   98 (437)
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchH
Confidence            33455678888999999999999999888765 99999999998766558899998888877777766665543211  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccCccchHHHHHHHHHHHHHHHHHHHHHhhc-------cCChhHHHHH
Q 008185          211 LPNLMACVLLSNLGASITEVAKDALVAEYGQ-KNGIVGLQSYAFMAAASGGILGNLFGGYFLL-------KTPPTTMFLV  282 (574)
Q Consensus       211 ~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~-~~~rg~~~s~~~~~~~~G~~igp~igg~l~~-------~~gwr~~f~i  282 (574)
                      +..+++.+++.+++.+...++..++.+|+++ +++|+++.++...+..+|.++++.+++.+..       ..+||++|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i  178 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV  178 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence            2344555666677777777778888999985 5889999888888888888777766665542       4689999999


Q ss_pred             HHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceee
Q 008185          283 FAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCY  361 (574)
Q Consensus       283 ~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~  361 (574)
                      .+++..+..++. +++||++......+       +.+.+.++.   ++.++++|.++...+..++.+..........++|
T Consensus       179 ~~~l~~~~~~~~~~~~~e~~~~~~~~~-------~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (437)
T TIGR00792       179 LALIGVVSLIICFFGTKERYSEIPKNI-------EKKLSLKQI---FKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYY  248 (437)
T ss_pred             HHHHHHHHHHHHHcCCEecCCCCCccc-------ccCCCHHHH---HHHHhCCHHHHHHHHHHHHHHHHHHHHcchhhee
Confidence            988887776664 56888652211100       001122222   3345678877665544443222222222334455


Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      .+..++ ++...+.......++.+++..+.+++.+|+++|+.+..+.++.++..+.. .+..        .+.+..... 
T Consensus       249 ~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~-  317 (437)
T TIGR00792       249 FTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF-FFAG--------SNLPLILVL-  317 (437)
T ss_pred             EeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHcc--------hhHHHHHHH-
Confidence            555566 45566766666788889999999999999999998877766555433321 1110        011111111 


Q ss_pred             HHHHHHH-HhhHHHHHHHHHhhcC-------CChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCC-------
Q 008185          442 GLAETLA-QFKLLPFSMLLARLCP-------QGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSS-------  506 (574)
Q Consensus       442 ~l~~~~~-~~~~~p~~~l~~~~~p-------~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~-------  506 (574)
                      .+..+++ +.......++++|.++       ++.+|+++|+.+...++|.++++.+.|.+.+..|+..+.-+.       
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~  397 (437)
T TIGR00792       318 IILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGI  397 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHH
Confidence            1111222 2222333455666654       567899999999999999999999999999998875321111       


Q ss_pred             hhHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHh
Q 008185          507 LPVGIVIQFLAALLPLIWIH-NVPMSETIIEKGRK  540 (574)
Q Consensus       507 l~~~~li~~~~~ll~l~~~~-~vp~~~~~~~~~~~  540 (574)
                      ......+.++..+++++.+. ..|.+|++.+|.++
T Consensus       398 ~~~~~~~p~i~~~~~~~~~~~~y~l~~~~~~~i~~  432 (437)
T TIGR00792       398 KILMFAVPALFLLLAAIIIGRFYKLTEKKHAEIVE  432 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHeeCcHHHHHHHHH
Confidence            12334455555666666665 89988887766443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.96  E-value=5.7e-26  Score=241.80  Aligned_cols=382  Identities=13%  Similarity=0.053  Sum_probs=250.5

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhhhheeeccccccCC-CccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGG-AHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~~~G-~rRk~~l~i~~~~~~~~  197 (574)
                      +...|+.|++.. +...+++.++++ .|++.+++|++..+ ..++.++|+||+++||++..+ .|||++++++.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~-~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLV-GQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHH-HHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            456789999987 777888888887 59999999998544 446888999999999973221 26677888888887777


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc-CCh
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK-TPP  276 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~-~gw  276 (574)
                      ..++++..... .++.+++..++.++..+..++..++++.|..++++|+++.++...+..+|.++|+.+++.+.+. .||
T Consensus        82 ~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw  160 (402)
T PRK11902         82 IAAMAFCPPHA-ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW  160 (402)
T ss_pred             HHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence            77766664322 2455555666667778888999999999999999999999999988899999999999998885 599


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccc
Q 008185          277 TTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSG  356 (574)
Q Consensus       277 r~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~  356 (574)
                      |..|++.+++.++..+..+++||++.+..+.       ++..+..   .+.+++.+++|.++..++..++..........
T Consensus       161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~-------~~~~~~~---~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~  230 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTTLWAPEPEVPARPP-------RSLGEAV---VGPLRDFFSRRGAWALLLLIVLYKLGDAFAGS  230 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccccccc-------chhHHHH---HHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHH
Confidence            9999999887766555456678865432110       0001111   22344567788776655443331111111111


Q ss_pred             cceeehccccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcce
Q 008185          357 SMFCYQTQCLNINPSVIGMSRVI-GQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEV  435 (574)
Q Consensus       357 ~~~~~~~~~~g~s~~~~gl~~i~-~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~  435 (574)
                      ..+.+..+.+|+++.+.|+.... +.++.+++..+.+++.||+++|+.+..+.++..+..+....+...      ..+.+
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~------~~~~~  304 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT------PKHLW  304 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc------CCcHH
Confidence            12234556789999999998644 455688888999999999998887766555444332221111110      01111


Q ss_pred             EEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHH
Q 008185          436 FVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQF  515 (574)
Q Consensus       436 ~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~  515 (574)
                      .......+..+.+++...+..+.....++++..++.+++++++..++..+++.++|.+.+.+|+.        .++.+.+
T Consensus       305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~--------~~f~~~~  376 (402)
T PRK11902        305 TMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWP--------GFYLMTV  376 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHHHHHH
Confidence            11111111112233334444555666777777778888888888888887777899999998853        3344444


Q ss_pred             HHHHHHHHHHHhc
Q 008185          516 LAALLPLIWIHNV  528 (574)
Q Consensus       516 ~~~ll~l~~~~~v  528 (574)
                      ++.+++++.....
T Consensus       377 ~~~~~~~~~~~~~  389 (402)
T PRK11902        377 VIALPGLALLWLM  389 (402)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.95  E-value=3.1e-26  Score=248.72  Aligned_cols=369  Identities=11%  Similarity=-0.027  Sum_probs=236.4

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      .|..+.++++.|+...++- ......+ .+.+++|++..+.|++.+.+.+++.+ +|+.|+++||+     +||+++.++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~r~~l~~~  100 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQN-DMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-----NTKQFLPFL  100 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-----CccchHHHH
Confidence            4666666777777666544 4555555 56778999999999999999999876 88999999985     455666555


Q ss_pred             HHHHHHHHHHhhccc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHH
Q 008185          191 VFLQILSWGPLALFP-VAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGY  269 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~  269 (574)
                      .++..++....+... ....+++.++++|++.+++.+...+....++.|..++++||.+++++..+..+|+++|++++.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~  180 (467)
T PRK09556        101 LILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALW  180 (467)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHH
Confidence            555444444333320 0011367788899999988877777777889999999999999999999899999999999887


Q ss_pred             hhccC---ChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhc----c--hhhhhhhhHHHHHHH-H-HHHHcchhh
Q 008185          270 FLLKT---PPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQN----V--ASKSIAQSIKKQFSD-L-IATIGEESI  337 (574)
Q Consensus       270 l~~~~---gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~----~--~~~~~~~~~~~~~~~-~-~~~~~~~~v  337 (574)
                      +.+..   +||..|.+.+++.++..++. ++.++++......++++    .  +.++..+..+...++ . +..+++|.+
T Consensus       181 ~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  260 (467)
T PRK09556        181 GANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVI  260 (467)
T ss_pred             HHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHH
Confidence            76543   69999998888777666554 34555432211000000    0  000000000000011 1 125788888


Q ss_pred             HHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhH
Q 008185          338 SYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLL  417 (574)
Q Consensus       338 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~  417 (574)
                      +...+..++.+..........|.|+.+.+|+++.+.++......++.+++..+.+++.||+++|+.......+..+....
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~  340 (467)
T PRK09556        261 WLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTL  340 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence            87766555433333333334566777889999999998888888889999999999999999887665443322221111


Q ss_pred             HHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHh-HHHHHHHHHHHHHH
Q 008185          418 DLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCL-SSIASGFLGVGLAS  495 (574)
Q Consensus       418 ~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~l-g~~lg~~i~g~l~~  495 (574)
                       +.+...       .+.+.......+..........+......|..|++.+|++.|+.+...++ |..++|.+.|.+.+
T Consensus       341 -~~~~~~-------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        341 -GVYQHA-------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             -HHHHhc-------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence             111100       01111101111111111111111224566999999999999999999997 77899999999988

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.95  E-value=8.1e-26  Score=241.70  Aligned_cols=374  Identities=10%  Similarity=-0.001  Sum_probs=246.1

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhc---ccCc
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLAL---FPVA  207 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~---~~~~  207 (574)
                      +....++.+. ++++.++.+.|++.+.+.+++.+ .|+.|+++||+     +||+.+.++.++..+++..++.   ...+
T Consensus        35 ~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~~  108 (417)
T PRK10489         35 LLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-----DRKKLILLARGTCGLGFIGLALNAFLPEP  108 (417)
T ss_pred             HHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-----CCceEEEehHHHHHHHHHHHHHHHHcCCC
Confidence            3444455444 45788999999999999998866 88999999985     4555565565555554443321   1111


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 008185          208 AKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLL  287 (574)
Q Consensus       208 ~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~  287 (574)
                        +++.+++.|++.+++.+...+...+.+.|..++++|+++.++......+|.++||.++|.+.+..||+|.|++.++..
T Consensus       109 --~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~  186 (417)
T PRK10489        109 --SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGT  186 (417)
T ss_pred             --cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence              255667788888888777766777888999988999999999888999999999999999988889999999987776


Q ss_pred             HHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccC
Q 008185          288 SLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLN  367 (574)
Q Consensus       288 ~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g  367 (574)
                      ++..++.+.+||++.+..+ +      ++..++.+   +..+..+++|.++...+..++ ..........++.|..+.+|
T Consensus       187 ~~~~~~~~~l~~~~~~~~~-~------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~g  255 (417)
T PRK10489        187 FITLLPLLRLPALPPPPQP-R------EHPLRSLL---AGFRFLLASPVVGGIALLGGL-LTMASAVRVLYPALADEVWQ  255 (417)
T ss_pred             HHHHHHHHhCCCCCCCCcc-c------ccchHHHH---HHHHHHHcChHHHHHHHHHHH-HHHHHhHHHhhHHHHHhccC
Confidence            6655555667775432210 0      00111111   223334566665444332222 11111222234556677799


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHH
Q 008185          368 INPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETL  447 (574)
Q Consensus       368 ~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~  447 (574)
                      .++.+.|+......++.+++..+.+++.+|.+.++.+..+.++..+..+. +...         ++.+.... ..+..++
T Consensus       256 ~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~-~~~~---------~~~~~~~~-~~~~~g~  324 (417)
T PRK10489        256 MGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGL-FGLM---------PMWILAVL-CLALFGY  324 (417)
T ss_pred             CChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHH-HHcc---------chHHHHHH-HHHHHHH
Confidence            99999999988889999999999999888866666666555444333221 1111         11111111 1111122


Q ss_pred             HHhhHHH-HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHH
Q 008185          448 AQFKLLP-FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIH  526 (574)
Q Consensus       448 ~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~  526 (574)
                      +.....+ ..+++.+..|++.||+++|+++...++|+.+|+.++|.+.+.+|..       ......+++..+++++...
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~-------~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPV-------ASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh-------hHHHHHHHHHHHHHHHHHH
Confidence            2222222 3467789999999999999999999999999999999999987742       1223334444445566667


Q ss_pred             hcCCCHHHHHHHHhcC
Q 008185          527 NVPMSETIIEKGRKRG  542 (574)
Q Consensus       527 ~vp~~~~~~~~~~~~~  542 (574)
                      .+|+.|+.++||.+.+
T Consensus       398 ~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        398 VLGELRRFRQTPPEVD  413 (417)
T ss_pred             hcccccccccccccCC
Confidence            8899888888777655

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.95  E-value=2.2e-25  Score=242.35  Aligned_cols=418  Identities=13%  Similarity=0.069  Sum_probs=247.6

Q ss_pred             HHHHHHHHHHHhhhcc-chhhhhHHHHHHhc--------CCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccch
Q 008185          116 MLVLCGLGYWVQGFRC-FPWLALNFHMAHNL--------SLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIP  185 (574)
Q Consensus       116 ~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~--------~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~  185 (574)
                      .+++..++.+..+++. +...+.+ .+++++        +.+..+.+++.+.+.++..+ .+++|+++||+     +||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-----Grr~   86 (479)
T PRK10077         13 ITLVATLGGLLFGYDTAVISGTVE-SLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-----GRRD   86 (479)
T ss_pred             HHHHHHHHHHhcCcccceehHhHH-HHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHH
Confidence            4444666677788776 4444444 345555        88999999999999998876 77899999985     5666


Q ss_pred             hHhHHHHHHHHHHHHhhcc--------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHH
Q 008185          186 YICIGVFLQILSWGPLALF--------PVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAA  257 (574)
Q Consensus       186 ~l~i~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~  257 (574)
                      .++++.++..++..+.++.        ..+...+..++++|++++++.+...+...++++|..++++||.++++...+..
T Consensus        87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~  166 (479)
T PRK10077         87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII  166 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence            6666766666665544432        11112245678899999999999888889999999999999999999999989


Q ss_pred             HHHHHHHHHHHHhh--------ccCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcch-----hhhhhhhHHHH
Q 008185          258 SGGILGNLFGGYFL--------LKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVA-----SKSIAQSIKKQ  324 (574)
Q Consensus       258 ~G~~igp~igg~l~--------~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~-----~~~~~~~~~~~  324 (574)
                      +|.++++++++.+.        +..|||+.|++.++..++..+..+++||++.+..++.+.+..     +....+..++.
T Consensus       167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  246 (479)
T PRK10077        167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA  246 (479)
T ss_pred             HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence            99999988877653        356999999998877777655567799987543211111000     00000000111


Q ss_pred             HHHHHHHHc-----chhhHHH---HHHHHhHhhhcccc--cccceee---hccccCCCchhHHHHHHHHHHHHHHHHHHH
Q 008185          325 FSDLIATIG-----EESISYP---LTWLVASVAMVPVL--SGSMFCY---QTQCLNINPSVIGMSRVIGQSMLLSLTVFY  391 (574)
Q Consensus       325 ~~~~~~~~~-----~~~v~~~---~l~~~l~~~~~~~~--~~~~~~~---~~~~~g~s~~~~gl~~i~~~ig~lig~~l~  391 (574)
                      .++.+..++     .+..+..   .....+........  .....++   ..+..|++....++..+..+++.+++..+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~  326 (479)
T PRK10077        247 LQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLA  326 (479)
T ss_pred             HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            111111111     1111100   00100000000000  0011111   124578877666666667777788888889


Q ss_pred             HHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHH
Q 008185          392 DRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGS  470 (574)
Q Consensus       392 ~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt  470 (574)
                      +++.+|+++|+++..+.++.+++.+... .....+    ....+. .....++.+.......|. .++++|.+|++.||+
T Consensus       327 g~l~dr~g~r~~~i~~~~~~~v~~~~l~-~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  400 (479)
T PRK10077        327 IMTVDKFGRKPLQIIGALGMAIGMFSLG-TAFYTQ----APGIVA-LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGK  400 (479)
T ss_pred             HHHHHHhcChHHHHHhHHHHHHHHHHHH-HHHhcC----cccHHH-HHHHHHHHHHHhccccchhHHHhHhhCChhHHHH
Confidence            9999999999998888776665543321 111000    000010 111111111111222343 577899999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCCCcc
Q 008185          471 LTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKGRKRGLSRR  546 (574)
Q Consensus       471 ~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp~~~~~~~~~~~~~~~~~  546 (574)
                      +.|+.+..++++..+++.+.+.+.+. ++..+.+...+...+...+..+..++.+++.||++++++||.++.+++.
T Consensus       401 ~~g~~~~~~~~g~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  475 (479)
T PRK10077        401 ALAIAVAAQWIANYFVSWTFPMMDKN-SWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPE  475 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhc-cchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhc
Confidence            99999999999999988776655421 1111111111122222222222233334578999988888777665443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.95  E-value=5.8e-26  Score=255.05  Aligned_cols=183  Identities=16%  Similarity=0.087  Sum_probs=142.1

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      .|.++++++++.+..++.. +....++ .+.+++|++..+.+++.+++.++.++ .+++|+++||+     +||+.++++
T Consensus       165 ~~~l~~i~~l~~~~~g~d~~~is~ilp-~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-----GRR~~lii~  238 (742)
T TIGR01299       165 QWALFFVLGLALMADGVEVFVVGFVLP-SAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-----GRKQCLLIC  238 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHH
Confidence            5666666677777777655 3444444 56667999999999999999998877 67899999985     566666667


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++.++.++.++    ++.++++|++.++|.+...+...+++.|..|+++||..+++..++..+|.++++.++..+
T Consensus       239 lil~~i~~ll~afa~s----~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       239 LSVNGFFAFFSSFVQG----YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666665555532    567888999999998888888899999999999999999999999999999999888766


Q ss_pred             hcc-------------CChhHHHHHHHHHHHHHHHHhhhccccccccc
Q 008185          271 LLK-------------TPPTTMFLVFAVLLSLQLAISFSAREESLGLA  305 (574)
Q Consensus       271 ~~~-------------~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~  305 (574)
                      ...             .+||+.|++.++..++.++..+++||++.+..
T Consensus       315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~  362 (742)
T TIGR01299       315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL  362 (742)
T ss_pred             HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            532             36999999887766655555678999987643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.95  E-value=9.1e-26  Score=242.73  Aligned_cols=365  Identities=15%  Similarity=0.046  Sum_probs=231.7

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      ++.......+.+++..+.. ......+ .+.+++|+++.+.+++.+.+.+++.+ +|+.|+++||+     +||+.+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~~~~~   94 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMP-EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-----NARYFMGIG   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-----CCchhHHHH
Confidence            3344444555566555543 3334444 44566999999999999999998866 88999999995     566677777


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++..+.+...+    ++.+++.|++.+++.+...+...+++.|..++++|+.++++.+.+..+|.++||.+++++
T Consensus        95 ~~~~~~~~~~~~~~~~----~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  170 (434)
T PRK11663         95 LIATGIINILFGFSSS----LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI  170 (434)
T ss_pred             HHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777776665532    566677788877777766666678899999989999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHHHHHHH-hhhcccccccccccc-----hhcc--hhhhh--hhhHHHHHHHHHHHHcchhhHHH
Q 008185          271 LLKTPPTTMFLVFAVLLSLQLAI-SFSAREESLGLAQVS-----YQNV--ASKSI--AQSIKKQFSDLIATIGEESISYP  340 (574)
Q Consensus       271 ~~~~gwr~~f~i~ai~~~~~~~~-~~~lpEt~~~~~~~~-----~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~v~~~  340 (574)
                      .+..|||+.|++.+++.++..++ .+++||++.....+.     ++..  .++..  ..+.++..+  ...+++|.++..
T Consensus       171 ~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  248 (434)
T PRK11663        171 ALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILT--KYVLLNPYIWLL  248 (434)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHH--HHHhcChHHHHH
Confidence            99899999999988777655544 356787654321000     0000  00000  001111111  124567777765


Q ss_pred             HHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhHH
Q 008185          341 LTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKV--PLRKLVGAVQILYASSLLLD  418 (574)
Q Consensus       341 ~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~--~~r~ll~~~~ll~~~~~l~~  418 (574)
                      .+..++.+.........++.|..+.+|+++.+.+.......++.+++..+.+++.||+  +.|+.......+........
T Consensus       249 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~  328 (434)
T PRK11663        249 SFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGS  328 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHH
Confidence            5443332222222223345566677899999988887777888888888888888887  33333211111111111111


Q ss_pred             HHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHH---HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          419 LILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLP---FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       419 l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p---~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      +....       ..+......   +...++.....|   ......|..|++.+|++.|+.++..++|.+++|.+.|.+.+
T Consensus       329 ~~~~~-------~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~  398 (434)
T PRK11663        329 LWLMP-------FASYVMQAA---CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE  398 (434)
T ss_pred             HHHcc-------cccHHHHHH---HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            11110       011111000   011111111111   12346788899999999999999999999999999999999


Q ss_pred             hhCc
Q 008185          496 LTGI  499 (574)
Q Consensus       496 ~~g~  499 (574)
                      ..|+
T Consensus       399 ~~g~  402 (434)
T PRK11663        399 IWHW  402 (434)
T ss_pred             hccc
Confidence            7764

>PRK10504 putative transporter; Provisional

Probab=99.95  E-value=1.8e-25  Score=242.81  Aligned_cols=404  Identities=15%  Similarity=0.132  Sum_probs=260.7

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|..+. +++.+++..+.. ......+.+ .+++|.++.+.+++.+.+.++..+ .|++|+++||+     +||+.++.+
T Consensus         9 ~~~~~~-~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~   81 (471)
T PRK10504          9 RWQLWI-VAFGFFMQSLDTTIVNTALPSM-AQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-----GVRNIFFTA   81 (471)
T ss_pred             HHHHHH-HHHHHHHHHHhHHHHHHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHH
Confidence            344443 666677776665 445555544 456999999999999988888655 88899999985     455556556


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++..+.++.. +   .+.+++.|++.+++.+...+...+.+.|..++++|+.++++......+|..+||.++|.+
T Consensus        82 ~~~~~~~~~~~~~~~-~---~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l  157 (471)
T PRK10504         82 IVLFTLGSLFCALSG-T---LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLL  157 (471)
T ss_pred             HHHHHHHHHHHHHhC-C---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            666666665555443 2   566788899999988887777788899999999999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHHHHHHHhh-hcccccccccccchh----------------cchhh-hhhh-h-----------
Q 008185          271 LLKTPPTTMFLVFAVLLSLQLAISF-SAREESLGLAQVSYQ----------------NVASK-SIAQ-S-----------  320 (574)
Q Consensus       271 ~~~~gwr~~f~i~ai~~~~~~~~~~-~lpEt~~~~~~~~~~----------------~~~~~-~~~~-~-----------  320 (574)
                      .+..||||.|++.+....+..+... ..|+.+....+.+..                +.++. .... .           
T Consensus       158 ~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (471)
T PRK10504        158 VEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVA  237 (471)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHH
Confidence            9999999999998777666555543 445433211110000                00000 0000 0           


Q ss_pred             -----HHH-----HHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHH
Q 008185          321 -----IKK-----QFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVF  390 (574)
Q Consensus       321 -----~~~-----~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l  390 (574)
                           .++     ...+ .+++++|.+...++..++.+..........++|++..+|.++.+.++......++.+++..+
T Consensus       238 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~  316 (471)
T PRK10504        238 LLLYLLHARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRI  316 (471)
T ss_pred             HHHHHHHHhcCCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                 000     0001 23567777766555444422222222334566777778999999999988888888888888


Q ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHH-HhhHHHHHHHHHhhcCCChhH
Q 008185          391 YDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLA-QFKLLPFSMLLARLCPQGCEG  469 (574)
Q Consensus       391 ~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~p~~~l~~~~~p~~~~g  469 (574)
                      .+++.+|+++|+++..+.++.++..++.... .       ............+..+++ .....+...+..+..|++.+|
T Consensus       317 ~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g  388 (471)
T PRK10504        317 VVQVVNRFGYRRVLVATTLGLALVSLLFMLV-A-------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLAS  388 (471)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHHHHHHhc-c-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhcc
Confidence            9999999999999887766555443322111 0       001111011111112122 233344566778889999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccC--CC----CChhHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 008185          470 SLTSFSASALCLSSIASGFLGVGLASLTGITFG--DY----SSLPVGIVIQFLAALLPLIWIHNVPMSETIIE  536 (574)
Q Consensus       470 t~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~--~~----~~l~~~~li~~~~~ll~l~~~~~vp~~~~~~~  536 (574)
                      +++|+.++.+++|.++|+.++|.+.+..|+...  ..    ..+...++..+++.+++++.+..+|.++++.+
T Consensus       389 ~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (471)
T PRK10504        389 SGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQHVSVDSGATHTVFMYTYLCMALIIALPALIFARVPNDTHQNV  461 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCCcchhhhh
Confidence            999999999999999999999999998876421  00    01111122224445555555566776654443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.95  E-value=2.3e-25  Score=231.92  Aligned_cols=353  Identities=14%  Similarity=0.056  Sum_probs=237.3

Q ss_pred             HHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHH
Q 008185          123 GYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGP  200 (574)
Q Consensus       123 ~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~  200 (574)
                      ..+...+.. +....++.+.. +++.++.+.+++.+++.++..+ .|++|+++||+     +||+.+..+.++..++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-----DRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-----chhHHHHHHHHHHHHHHHH
Confidence            334444433 44455555554 4899999999999999998765 88999999985     4666666666655555544


Q ss_pred             hhccc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 008185          201 LALFP-VAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTM  279 (574)
Q Consensus       201 ~~~~~-~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~  279 (574)
                      ..... ....+++.+++.|++.+++.+...+...+++.|..++++|++++++.+.+..+|.++||.+++++.+..|||+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~  160 (365)
T TIGR00900        81 LPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWA  160 (365)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            44433 11012567788899999999988888899999999999999999999999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHhhhc--ccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhccccc-c
Q 008185          280 FLVFAVLLSLQLAISFSA--REESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLS-G  356 (574)
Q Consensus       280 f~i~ai~~~~~~~~~~~l--pEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~-~  356 (574)
                      |++.++..++..+..+++  ||++....+.    . +++   ..++..+..+..+++|.++...+..++......... .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (365)
T TIGR00900       161 IWVDAVGFAISALLIVSVRIPELAASEIQA----L-SNA---VLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVA  232 (365)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCCccccc----c-chh---HHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999877665554444333  3332211100    0 000   111122233445677777665544433222211122 3


Q ss_pred             cceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceE
Q 008185          357 SMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVF  436 (574)
Q Consensus       357 ~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~  436 (574)
                      ..+++..+.+|+++.+.|+......++.+++..+.+++.||.++++++..+.++.++..+.. ....        ++.+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~  303 (365)
T TIGR00900       233 LFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVV-GLTP--------PNFPL  303 (365)
T ss_pred             HhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH-Hhhc--------hhHHH
Confidence            45666666789999999999888899999999999999999998887776654444332221 1110        01111


Q ss_pred             EeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          437 VLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       437 ~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      ......+..........+...++.|.+|++.||+++|+.++..+++..+++.++|.+.+.+|
T Consensus       304 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       304 FLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            11111122222223333345778899999999999999999999999999999999988654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.95  E-value=4.4e-25  Score=236.37  Aligned_cols=365  Identities=13%  Similarity=0.085  Sum_probs=238.4

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|.....+.+.++..++.. ...... +.+++++|+++.+.+++.+++.++..+ .|++|+++||+     +||+.+.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-----g~r~~l~~~   89 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIM-YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-----GRKPLMMWS   89 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHH
Confidence            4555555777777777766 444444 466788999999999999999998876 78899999985     577777778


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++..+.++..+    ++.++++|++.++|.+...+...+++.|..++++|++++++...+..+|+++++.+++.+
T Consensus        90 ~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l  165 (426)
T PRK12307         90 IVAYSVGTGLSGLASG----VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF  165 (426)
T ss_pred             HHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence            7777777766666542    567888999999998887777788999999999999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHh--
Q 008185          271 LLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASV--  348 (574)
Q Consensus       271 ~~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~--  348 (574)
                      .+..|||+.|++.++..++...+....||++....+..+++ .++. ....+......+..+++|.+........+.+  
T Consensus       166 ~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (426)
T PRK12307        166 AEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK-GKHS-QSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSI  243 (426)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc-cccc-ccchhhhhHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            88899999999864433222221223566532211100000 0000 0000111123344566666543322111111  


Q ss_pred             -hhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhc
Q 008185          349 -AMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINL  427 (574)
Q Consensus       349 -~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~  427 (574)
                       .........++.|..+ .|+++.+.+.......++.+++..+.+++.||+++|+++..+.++..+..+.. ....    
T Consensus       244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~----  317 (426)
T PRK12307        244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPL-FRIP----  317 (426)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHc----
Confidence             1111112233444444 68898888988888888999999999999999999988776665544332211 1110    


Q ss_pred             ccCcCcceEEeehhHHHHHHHHhhH-HHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          428 QFGVPNEVFVLCFAGLAETLAQFKL-LPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       428 ~~~~~~~~~~l~~~~l~~~~~~~~~-~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                          .+....+....+......... .....++.|..|++.+|+++|+...+.++|+.++|.+.|.+.+.+|+
T Consensus       318 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~  386 (426)
T PRK12307        318 ----QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGL  386 (426)
T ss_pred             ----cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence                011110111111111111111 11235678999999999999999999999999999999999988764

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.94  E-value=6.1e-25  Score=232.53  Aligned_cols=367  Identities=11%  Similarity=0.046  Sum_probs=241.6

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|.....+.+.++..+++. +.....+ .+++++|++..+.+++.+++.++..+ +|+.|+++||+     +||+.+.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----g~r~~~~~~   83 (405)
T TIGR00891        10 QWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-----GRRLPMVTS   83 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHH
Confidence            6777777778888888776 4444444 56778999999999999999988766 88999999985     456666667


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++..+..+.++    ++.+++.|++.+++.+...+...+++.|..++++|+.++++...+..+|.++|+.+++.+
T Consensus        84 ~~~~~~~~~~~~~~~~----~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l  159 (405)
T TIGR00891        84 IVLFSAGTLACGFAPG----YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLV  159 (405)
T ss_pred             HHHHHHHHHHHHHhcc----HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776777666655532    567788899999998888888889999999999999999999999999999999999998


Q ss_pred             hccCC--hhHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhh------hhHHHHHH----HHHHHHc-chh-
Q 008185          271 LLKTP--PTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIA------QSIKKQFS----DLIATIG-EES-  336 (574)
Q Consensus       271 ~~~~g--wr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~-~~~-  336 (574)
                      .+..+  ||+.|++.++..++..+....+||++....+.++++..++...      ...++..+    ..++..+ .+. 
T Consensus       160 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (405)
T TIGR00891       160 VPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPT  239 (405)
T ss_pred             HHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHH
Confidence            87666  9999998766555544444567886543211110000000000      00000000    1111000 000 


Q ss_pred             hHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Q 008185          337 ISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLL  416 (574)
Q Consensus       337 v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l  416 (574)
                      +........+...........++.|..+.+|+++.+.+.......++.+++..+.+++.||+++|+.+..+.++..+..+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  319 (405)
T TIGR00891       240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLII  319 (405)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence            11111111111111112223345566677899999999998888899999999999999999999887766554322222


Q ss_pred             HHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008185          417 LDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASL  496 (574)
Q Consensus       417 ~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~  496 (574)
                      ... ...        .+.+.......+...+..........+++|.+|++.+|+++|+.+.+.++|..++|.++|.+.+.
T Consensus       320 ~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       320 PVF-AIG--------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             HHH-HhC--------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111 100        11111111111112222222223346678999999999999999999999999999999999998


Q ss_pred             hC
Q 008185          497 TG  498 (574)
Q Consensus       497 ~g  498 (574)
                      .|
T Consensus       391 ~g  392 (405)
T TIGR00891       391 LD  392 (405)
T ss_pred             cc
Confidence            77

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=4.7e-25  Score=240.86  Aligned_cols=396  Identities=13%  Similarity=0.036  Sum_probs=233.2

Q ss_pred             HHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhH-HHHH-----HHHhhhhhhh-hhhheeeccccccCCCccchhH
Q 008185          116 MLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPST-LQLV-----QNSGNLPMVA-KPLYGILSDALYIGGAHRIPYI  187 (574)
Q Consensus       116 ~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~-~~l~-----~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l  187 (574)
                      .++...++.+..+++. +.....+ .+.++++.+... .+++     .++..+++.+ ++++|+++||+     +||+.+
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-----Grr~~l   90 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAY-ALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-----GRQKIL   90 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHH
Confidence            4444667778888876 4444443 667777643321 1221     3555667766 66799999985     677778


Q ss_pred             hHHHHHHHHHHHHhhcccCccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHH
Q 008185          188 CIGVFLQILSWGPLALFPVAAK----ALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILG  263 (574)
Q Consensus       188 ~i~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~ig  263 (574)
                      .++.++..++.++++++++...    ....++++|+++++|.+...+...+++.|.+|+++||.+.++...+..+|.++|
T Consensus        91 ~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg  170 (490)
T PRK10642         91 AITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLG  170 (490)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            8888888888888887764210    001367889999999988888888999999999999999998888777888888


Q ss_pred             HHHHHHhh--------ccCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcc-hhhhhhhhHHHHHHHHHHHHc-
Q 008185          264 NLFGGYFL--------LKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNV-ASKSIAQSIKKQFSDLIATIG-  333 (574)
Q Consensus       264 p~igg~l~--------~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-  333 (574)
                      +.++..+.        ..+|||++|++.+++.++..++...+||++......++.+. +++...+..+   .+++++++ 
T Consensus       171 ~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  247 (490)
T PRK10642        171 AGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPK---VSFKEIATK  247 (490)
T ss_pred             HHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcccccccccc---CCHHHHHHH
Confidence            76655442        25799999999876555444334578998654321110000 0000000000   01112222 


Q ss_pred             chhhHHHHH-HHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 008185          334 EESISYPLT-WLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYA  412 (574)
Q Consensus       334 ~~~v~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~  412 (574)
                      +++.+.... ..++.....+.....++.|+.+.+|++....++......++.+++.++.+++.||+++|+.+..+.++..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~  327 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALF  327 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            111111111 1111112222233334556667789988877777777888899999999999999999988776654333


Q ss_pred             HHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHH
Q 008185          413 SSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVG  492 (574)
Q Consensus       413 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~  492 (574)
                      +..+..+.....       .+.........+..+...........+..|.+|++.||++.|+...+..+++.++|.+.+.
T Consensus       328 ~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~  400 (490)
T PRK10642        328 VLAIPAFILINS-------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAW  400 (490)
T ss_pred             HHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222211111110       0111111111111111111222234556789999999999998666677777888998888


Q ss_pred             HHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 008185          493 LASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETI  534 (574)
Q Consensus       493 l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp~~~~~  534 (574)
                      +.+..+.    +   +....+..+..+++++..+++||+++.
T Consensus       401 l~~~~~~----~---~~~~~~~~~~~~i~~~~~~~~pes~~~  435 (490)
T PRK10642        401 LVESTQN----L---MMPAYYLMVVAVIGLITGVTMKETANR  435 (490)
T ss_pred             HHHHhCC----c---hHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            8775431    1   111222223333444455567887654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.94  E-value=1.8e-24  Score=229.80  Aligned_cols=321  Identities=11%  Similarity=0.005  Sum_probs=220.4

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACV  218 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (574)
                      .+.+++|+++++.++..+.+.+...+ +|++|+++||+     +||+.++.+.++..++..+....+ +   ++.++++|
T Consensus        45 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~-~---~~~l~~~r  115 (394)
T PRK10213         45 PMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-----DRRYVVILFAVLLTLSCLLVSFAN-S---FSLLLIGR  115 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcHHHHHHHHHHHHHHHHHHHHHC-h---HHHHHHHH
Confidence            45677999999999999998887655 88999999985     566777777777777776665543 2   67788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh-hhc
Q 008185          219 LLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS-FSA  297 (574)
Q Consensus       219 ~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~-~~l  297 (574)
                      ++.+++.+...+...+++.|..++++|++++++...+.++|.++||.+++++.+..|||+.|++.+++.++..+.. ..+
T Consensus       116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~  195 (394)
T PRK10213        116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSL  195 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999998888778889999999999999999999999999999999999999999999999999887766554443 346


Q ss_pred             ccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccc-eeehccccCCCchhHHHH
Q 008185          298 REESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSM-FCYQTQCLNINPSVIGMS  376 (574)
Q Consensus       298 pEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~g~s~~~~gl~  376 (574)
                      ||++.+..          +   . .   +..++.+++|.++...+..++.+.........+ +++ .+.+|+++...|+.
T Consensus       196 p~~~~~~~----------~---~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~g~~  257 (394)
T PRK10213        196 PSLPGEPS----------H---Q-K---QNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVY-MNLAGFGVDGLTLV  257 (394)
T ss_pred             CCCCcccc----------c---c-h---hHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChhHHHHH
Confidence            77532110          0   0 0   112344677777765443333222111111222 333 35689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHH-hhHHHH
Q 008185          377 RVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQ-FKLLPF  455 (574)
Q Consensus       377 ~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~p~  455 (574)
                      ....+++.+++..+.+++.||.+ ++.+..+.++...+.+......         ++.+..... .+..+++. ......
T Consensus       258 ~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~---------~~~~~~~~~-~~l~G~~~~~~~~~~  326 (394)
T PRK10213        258 LLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG---------SDKIVATGV-AIIWGLTFALVPVGW  326 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHH-HHHHHHHHHhhhHHH
Confidence            88888999999999999999854 4443333333333222211111         011111111 12222222 223333


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          456 SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       456 ~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      .+++++..| +..+...++.....++|..+|+.++|.+.+..|.
T Consensus       327 ~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~  369 (394)
T PRK10213        327 STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGL  369 (394)
T ss_pred             HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            456777777 4567788888888899999999999999997764

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.94  E-value=9.9e-25  Score=232.42  Aligned_cols=358  Identities=15%  Similarity=0.039  Sum_probs=241.3

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|.+++.+.+..++..+.. +..+..+ .+.+++|.++.+.++..+.+.++..+ .|+.|+++||+     +||+++.++
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~   84 (406)
T PRK15402         11 ALLFPLCLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-----GRRPVMLAG   84 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHH
Confidence            6666676777777666654 4555555 45677999999999999999998766 78899999985     566677777


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      ..+..++....+..++    ++.+++.|++.+++.+.......+.+.|..++++|++.+++......+|..+||.+++++
T Consensus        85 ~~~~~~~~~~~~~~~~----~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  160 (406)
T PRK15402         85 VAFFILTCLAILLAQS----IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL  160 (406)
T ss_pred             HHHHHHHHHHHHHHcc----HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777666655532    566788899988888776666778889999988888888888777788999999999999


Q ss_pred             hccCChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhh
Q 008185          271 LLKTPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVA  349 (574)
Q Consensus       271 ~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~  349 (574)
                      .+..+||+.|++.+++.++..+.. +..||++.+..+.       .    ..++..++.+..+++|.++...+..++...
T Consensus       161 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (406)
T PRK15402        161 IHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK-------L----SLKELGRDYKLVLKNRRFVAGALALGLVSL  229 (406)
T ss_pred             HHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc-------c----cHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            888899999999888877766554 4578765322110       0    011122334456788887765554433222


Q ss_pred             hcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 008185          350 MVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQF  429 (574)
Q Consensus       350 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~  429 (574)
                      .........+.++.+.+|+++.+.|+......++.+++..+.+++.+|+++|+.+.++.++..+..+.. ......    
T Consensus       230 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~-~~~~~~----  304 (406)
T PRK15402        230 PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLA-ALATVI----  304 (406)
T ss_pred             HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHc----
Confidence            111222234556667789999999988777778888999999999999999988777655444332221 111100    


Q ss_pred             CcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          430 GVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       430 ~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                       ....+..+....+..+++.....|. .... ...+++.+|++.++++..++++..+|+.+++.+.+..+
T Consensus       305 -~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  372 (406)
T PRK15402        305 -SSHAYLWLTAGLSLYAFGIGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG  372 (406)
T ss_pred             -ccccHHHHHHHHHHHHHHHHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence             0011111111112222222222222 2222 33455899999999999999999999999888776544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.94  E-value=1.3e-24  Score=234.96  Aligned_cols=367  Identities=12%  Similarity=0.028  Sum_probs=225.4

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|.++..+++.+....+.. ......+ ++.++ |++..+.++..+.+.+++.+ +|++|+++||+     +||++++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-----g~k~~l~~~   99 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPAG   99 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----CCchhHHHH
Confidence            4555544444444433321 2223344 56676 99999999999999998876 88999999985     566677777


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHH-HHHHHHHHH
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGG-ILGNLFGGY  269 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~-~igp~igg~  269 (574)
                      .++.+++...+++......++..+++.|++.+++.+...+.....+.|..++++|+.++++++.+..+|. +++|+++..
T Consensus       100 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~  179 (452)
T PRK11273        100 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLG  179 (452)
T ss_pred             HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            7776777666655432111245567778888877776666566778898888999999999888888776 556665544


Q ss_pred             hhccCChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcc-h--------hhhhhhhHHHHHHHHHHHHcchhhHH
Q 008185          270 FLLKTPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNV-A--------SKSIAQSIKKQFSDLIATIGEESISY  339 (574)
Q Consensus       270 l~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~v~~  339 (574)
                      +....|||+.|++.+++.++..++. +++||+++....+++++. +        ++....+.++..  ....+++|.++.
T Consensus       180 ~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  257 (452)
T PRK11273        180 MAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIF--MQYVLPNKLLWY  257 (452)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHH--HHHHHcChHHHH
Confidence            4344599999999888777765554 567887643211110000 0        000000111111  122467788777


Q ss_pred             HHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHH-HHHHHHHHHHh
Q 008185          340 PLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKV--PLRKLVG-AVQILYASSLL  416 (574)
Q Consensus       340 ~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~--~~r~ll~-~~~ll~~~~~l  416 (574)
                      ..+..++.+...+.....+|.|+++..|++..+.+.......++.+++..+.+++.||+  ++|.... ....+..+. +
T Consensus       258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~-~  336 (452)
T PRK11273        258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA-T  336 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH-H
Confidence            65555443333333444566777778899988888887777788888888888888887  3333221 111111111 1


Q ss_pred             HHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHH---HHHHHHHhhcCCChhHHHHHHHHHHHHhHHHH-HHHHHHH
Q 008185          417 LDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLL---PFSMLLARLCPQGCEGSLTSFSASALCLSSIA-SGFLGVG  492 (574)
Q Consensus       417 ~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~l-g~~i~g~  492 (574)
                      ..+.+...       .+.+.... ..+  .++.....   ...++..|.+|++.+|+++|+.+...++|+.+ +|.++|.
T Consensus       337 ~~~~~~~~-------~~~~~~~~-~~~--~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~  406 (452)
T PRK11273        337 IVYWLNPA-------GNPTVDMA-CMI--VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  406 (452)
T ss_pred             HHHHHhcc-------cChHHHHH-HHH--HHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Confidence            11111100       01110001 111  11111111   12245678999999999999999999998765 7999999


Q ss_pred             HHHhhCc
Q 008185          493 LASLTGI  499 (574)
Q Consensus       493 l~~~~g~  499 (574)
                      +.+..|+
T Consensus       407 l~~~~g~  413 (452)
T PRK11273        407 TVDFFGW  413 (452)
T ss_pred             HHHHhcc
Confidence            9998774

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.94  E-value=1e-24  Score=232.00  Aligned_cols=356  Identities=17%  Similarity=0.058  Sum_probs=234.5

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|.......+..+..+++. ......+ .+.+++|.++.+.+++.+.+.++..+ .++.|+++||+     +||+.+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~   86 (406)
T PRK11551         13 LALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-----GRKRILIVS   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHH
Confidence            5666666666777777765 4444444 45677999999999999999988766 78899999985     466666666


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++..+.....+    ++.+++.|++.+++.+...+...+++.|..++++|++++++.+.+..+|..+++.+++.+
T Consensus        87 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  162 (406)
T PRK11551         87 VALFGLFSLATAQAWD----FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA  162 (406)
T ss_pred             HHHHHHHHHHHHHhcc----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666655555432    566788899999988887777889999999999999999999999999999999999988


Q ss_pred             hccCChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhh
Q 008185          271 LLKTPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVA  349 (574)
Q Consensus       271 ~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~  349 (574)
                      .+..+||+.|++.+++.++..++. +++||++.+.....++    ++ .+...+   ..++..+.+..+...+..++...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  234 (406)
T PRK11551        163 AGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG----KQ-RAPVLR---ALFGEGRATATLLLWISYFFTLI  234 (406)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc----hh-hhhhHH---HHhhhhhhhHHHHHHHHHHHHHH
Confidence            888999999999887666655543 5688875432211000    00 001111   11000011111111111111111


Q ss_pred             hcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 008185          350 MVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQF  429 (574)
Q Consensus       350 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~  429 (574)
                      ..+.....++.+.. .+|+++.+.++......++.+++..+.+++.||+++|+.+..+.+...+..+. +...       
T Consensus       235 ~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~-------  305 (406)
T PRK11551        235 VLYFLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAA-LAAA-------  305 (406)
T ss_pred             HHHHHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhc-------
Confidence            11111122334444 47999999999988888999999999999999999888876654433332221 1111       


Q ss_pred             CcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008185          430 GVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLT  497 (574)
Q Consensus       430 ~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~  497 (574)
                        ++.+.......+.............++..|.+|++.+|++.|+.++..++|..+||.++|.+.+..
T Consensus       306 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  371 (406)
T PRK11551        306 --PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG  371 (406)
T ss_pred             --CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence              111111111111111111122223567889999999999999999999999999999999988754

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.94  E-value=9.1e-25  Score=238.91  Aligned_cols=364  Identities=15%  Similarity=0.028  Sum_probs=252.9

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|..+..+++.+|...++. +...++|. +.+++|.+..+.+|+.+.+.+++.. .|++|+++||+     +||+.++++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-----Grk~~l~~~   77 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-----GFKRLLMLG   77 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHH
Confidence            6777777888899988887 77777764 5677999999999999999998754 88999999984     677777778


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccCccchHHHHHHHHHHHHHHHHHHHHH
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYG-QKNGIVGLQSYAFMAAASGGILGNLFGGY  269 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~-~~~~rg~~~s~~~~~~~~G~~igp~igg~  269 (574)
                      .++..++..+++..++    .+.++++|+++++|.+...+.....+.+.. ++++|++++++......+|.++||.++|+
T Consensus        78 ~~~~~~~~~~~~~a~~----~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~  153 (495)
T PRK14995         78 GTLFGLASLAAAFSPT----ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGI  153 (495)
T ss_pred             HHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777777777666543    677889999999988876665556666665 66899999999999999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchh-------------------hhhhhh---------
Q 008185          270 FLLKTPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVAS-------------------KSIAQS---------  320 (574)
Q Consensus       270 l~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~-------------------~~~~~~---------  320 (574)
                      +.+..||||+|++...+.++..++. +++||++....++  .+...                   +.....         
T Consensus       154 l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~--~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  231 (495)
T PRK14995        154 LLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQP--LNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLT  231 (495)
T ss_pred             hhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            9999999999999877776665554 5677754321110  00000                   000000         


Q ss_pred             --------HHHHHH---H--HHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHH
Q 008185          321 --------IKKQFS---D--LIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSL  387 (574)
Q Consensus       321 --------~~~~~~---~--~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig  387 (574)
                              ...+.+   +  ..+++++|.+....+..++...........++.|+++.+|+++.+.|+......++..++
T Consensus       232 ~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~  311 (495)
T PRK14995        232 GALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFS  311 (495)
T ss_pred             HHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence                    000000   0  024566766655444443322222222223455777889999999999999999999999


Q ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHH-HhhHHHHHHHHHhhcCCC
Q 008185          388 TVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLA-QFKLLPFSMLLARLCPQG  466 (574)
Q Consensus       388 ~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~p~~~l~~~~~p~~  466 (574)
                      ..+.+++.+|+++|+++..+.++..+.... +.... .     ..+.+.. ....+..+++ +....+......+..|++
T Consensus       312 ~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~-l~~~~-~-----~~~~~~~-~~~~~l~G~g~g~~~~~~~~~~~~~~~~~  383 (495)
T PRK14995        312 GPIAGILVSRLGLRLVATGGMALSALSFYG-LAMTD-F-----STQQWQA-WGLMALLGFSAASALLASTSAIMAAAPPE  383 (495)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHH-HHHhc-C-----CCchHHH-HHHHHHHHHhHHHHHHHHHHHHHhcCCHH
Confidence            999999999999988877666555433221 11111 0     0111111 1112222233 344445666778889999


Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008185          467 CEGSLTSFSASALCLSSIASGFLGVGLASL  496 (574)
Q Consensus       467 ~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~  496 (574)
                      ++|.+.++++..+++|.++|+.+.|.+.+.
T Consensus       384 ~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        384 KAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.94  E-value=5e-25  Score=237.55  Aligned_cols=370  Identities=15%  Similarity=0.038  Sum_probs=224.6

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCC--------hhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLH--------PSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICI  189 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s--------~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i  189 (574)
                      +.+..+..+++. ......+ .+..+++.+        ..+.+++.+++.++..+ .|++|+++||+     +||+.+.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~~~~  106 (481)
T TIGR00879        33 AAIGGLMFGYDTGVIGGALA-LPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-----GRKKSLLI  106 (481)
T ss_pred             HHHHHHhcccccchhhhhhh-cHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-----hhHHHHHH
Confidence            333445555554 3333333 334445555        89999999999998766 88999999985     56777777


Q ss_pred             HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHH--
Q 008185          190 GVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFG--  267 (574)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~ig--  267 (574)
                      +.++..++..+....... ..++.+++.|++.++|.+...+...+++.|..++++|+.++++.+.+..+|.++|+.++  
T Consensus       107 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~  185 (481)
T TIGR00879       107 IALLFVIGAILMGLAAFA-LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG  185 (481)
T ss_pred             HHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            777766666655444322 12346788999999998888888889999999999999999999999999999999999  


Q ss_pred             -HHhhccCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcch----------hhhhhhhHH--H-----------
Q 008185          268 -GYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVA----------SKSIAQSIK--K-----------  323 (574)
Q Consensus       268 -g~l~~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~----------~~~~~~~~~--~-----------  323 (574)
                       +...+..+||+.|++.++..++..+..+++||++.....+++.+.+          +.......+  +           
T Consensus       186 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (481)
T TIGR00879       186 KVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR  265 (481)
T ss_pred             hhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence             7666778999999997665555544456788875422111000000          000000000  0           


Q ss_pred             ----HHHHHHHHHcc--hhhH-HHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008185          324 ----QFSDLIATIGE--ESIS-YPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWK  396 (574)
Q Consensus       324 ----~~~~~~~~~~~--~~v~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~  396 (574)
                          ..+..+...++  +..+ ...+..+. ..........+..+..+..|++..+.++......++.+++..+.+++.|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  344 (481)
T TIGR00879       266 SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQ-QFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVD  344 (481)
T ss_pred             hccccHHHHHhcCchhHHHHHHHHHHHHHH-HHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                00111111111  1111 11111111 1111111111111223457888878888888888888888888999999


Q ss_pred             cCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCc--CcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHH
Q 008185          397 KVPLRKLVGAVQILYASSLLLDLILVRQINLQFGV--PNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTS  473 (574)
Q Consensus       397 r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~g  473 (574)
                      |+++|+.+..+.++.+++.+.........  ....  ......+....+..........|. ..++.|..|++.+|+++|
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  422 (481)
T TIGR00879       345 RFGRRPLLLIGAAGMAICLFVLGILGASF--VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGIS  422 (481)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHhhcc--cCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHH
Confidence            99999888777555544433221110000  0000  001111111111111122222232 345689999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          474 FSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       474 l~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      +.+...++|..+++.+.+.+.+..|+
T Consensus       423 ~~~~~~~lg~~i~~~~~~~~~~~~~~  448 (481)
T TIGR00879       423 IAVAANWLANFIVGFLFPTMLESIGV  448 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999998887654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09669 putative symporter YagG; Provisional

Probab=99.94  E-value=8.7e-24  Score=228.06  Aligned_cols=384  Identities=15%  Similarity=0.084  Sum_probs=242.5

Q ss_pred             hhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCcc--ch
Q 008185          134 WLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAA--KA  210 (574)
Q Consensus       134 ~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~--~~  210 (574)
                      ...+.+++.+++|+++.++|++.++..+..++ +|+.|.++||.+.+.+||||+++.+.+..++++.++...++..  ..
T Consensus        29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence            44456688899999999999999999886655 9999999999988777899999888777777766555554321  11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCccchHHHHHHHHHHHHHHHHHHHHHhhc-------cCChhHHHHH
Q 008185          211 LPNLMACVLLSNLGASITEVAKDALVAEYGQK-NGIVGLQSYAFMAAASGGILGNLFGGYFLL-------KTPPTTMFLV  282 (574)
Q Consensus       211 ~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~-~~rg~~~s~~~~~~~~G~~igp~igg~l~~-------~~gwr~~f~i  282 (574)
                      +.++++..++...+.+...++..++.+|++++ ++|+++.++......+|..+++.++..+..       ..||+..+.+
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i  188 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMV  188 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            23334444455556667778888999999854 789988887777777777777665443332       3578989988


Q ss_pred             HHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceee
Q 008185          283 FAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCY  361 (574)
Q Consensus       283 ~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~  361 (574)
                      .+++..+..++. +..||+..+..+ +         ..+.+   ++++..++||.++..++..++.............||
T Consensus       189 ~~ii~~v~~~~~~~~~~e~~~~~~~-~---------~~~~~---~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~  255 (444)
T PRK09669        189 MGLLGVVLFFCCFFMTKERYTPEVD-N---------SSSVW---KDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYY  255 (444)
T ss_pred             HHHHHHHHHHHHhCCeEEecCCCCc-C---------CCCHH---HHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhhee
Confidence            888777666654 456775432210 0         01122   334455788877665544333222222222333445


Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      .+...+. +...+.......+..+++..+.+++.+|+++|+.+..+.++..+..+... +..       ..+.+..+.. 
T Consensus       256 ~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~-  325 (444)
T PRK09669        256 VNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIF-FIP-------PSNVWLIFAL-  325 (444)
T ss_pred             eeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HhC-------cchHHHHHHH-
Confidence            5544442 33444455566677888888889999999999988776654443332211 110       0111111111 


Q ss_pred             HHHHHHHHhhHHH-HHHHHHhhcC-------CChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCC-CC---h--
Q 008185          442 GLAETLAQFKLLP-FSMLLARLCP-------QGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDY-SS---L--  507 (574)
Q Consensus       442 ~l~~~~~~~~~~p-~~~l~~~~~p-------~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~-~~---l--  507 (574)
                      .+..+++.....| ..++++|.++       ++.+|..+|+.+...++|.++|+.++|.+.+..|++.+.- +.   .  
T Consensus       326 ~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~~~~~~q~~~~~~~  405 (444)
T PRK09669        326 NILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYVGGAAVQSASVLTT  405 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence            1222222222222 3456666653       5668999999999999999999999999999999864321 11   1  


Q ss_pred             --hHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHh
Q 008185          508 --PVGIVIQFLAALLPLIWIHNVPMSETIIEKGRK  540 (574)
Q Consensus       508 --~~~~li~~~~~ll~l~~~~~vp~~~~~~~~~~~  540 (574)
                        .....+.+++.+++++.+.++|-+|++.+|.++
T Consensus       406 i~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~~i~~  440 (444)
T PRK09669        406 INLLFTVIPGVLFAGMAIILNFYKLNDARVEAIAQ  440 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence              122334455556666677789988887776443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.94  E-value=3.6e-24  Score=224.77  Aligned_cols=364  Identities=14%  Similarity=0.067  Sum_probs=226.4

Q ss_pred             HHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhh-hhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHh
Q 008185          124 YWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPM-VAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPL  201 (574)
Q Consensus       124 ~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~-~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~  201 (574)
                      ++..++.. +..+.++.++++++|.++.+.+++.+.+.+.. ..+|++|.++||+   | |||.++..+.+...++..+.
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~---g-~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ---G-DRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---C-CchHHHHHHHHHHHHHHHHH
Confidence            45555554 55566666788889999999999999988755 5599999999985   3 55555554545444454444


Q ss_pred             hcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccch--HHHHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 008185          202 ALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGL--QSYAFMAAASGGILGNLFGGYFLLKTPPTTM  279 (574)
Q Consensus       202 ~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~--~s~~~~~~~~G~~igp~igg~l~~~~gwr~~  279 (574)
                      +..++    ++.+++.|++.+.+.+...+...++..|..++++|+..  .+....+.++|.++||.+++++.+..|||+.
T Consensus        82 ~~~~~----~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~  157 (375)
T TIGR00899        82 AWNRN----YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVM  157 (375)
T ss_pred             Hhcch----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHH
Confidence            44432    45566777766555555555667777888776666543  4666677789999999999999988999999


Q ss_pred             HHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccc
Q 008185          280 FLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSM  358 (574)
Q Consensus       280 f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~  358 (574)
                      |++.++..++..++. +++||++.+..+.+        ...       +.+..+++|.++......++.+.........+
T Consensus       158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (375)
T TIGR00899       158 FLTAALAFVLCGVLVWLFLPSYPRGAPGAL--------TRL-------EVRGLLASRDTRLLFVACTLMWGCNILYIINM  222 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCccccc--------Ccc-------hhhhhhcCcchHHHHHHHHHHHHHHHHHHhhh
Confidence            999988777666654 45888653221100        000       11112445554433322222122111222234


Q ss_pred             eeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEe
Q 008185          359 FCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVL  438 (574)
Q Consensus       359 ~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l  438 (574)
                      +.|..+.+|.++.+.|+......+..+++..+.+++.||+++|+.+..+.++..+..+. .....         +.+...
T Consensus       223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~  292 (375)
T TIGR00899       223 PLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTG-LAADN---------SLWALL  292 (375)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHH-HHHHH---------HHHHHH
Confidence            55666778999998888776666666777788889999999998877665443332211 11110         111111


Q ss_pred             ehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHH
Q 008185          439 CFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAA  518 (574)
Q Consensus       439 ~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~  518 (574)
                      ....+.....+........+..|..|+ ++++++|+++...++|..++|.++|.+.+..|+.        ..+.+.++..
T Consensus       293 ~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~--------~~~~~~~~~~  363 (375)
T TIGR00899       293 MLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYH--------AVYWFAIVML  363 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------hHHHHHHHHH
Confidence            111111111122222234567788775 5679999999999999999999999999877642        2334444444


Q ss_pred             HHHHHHHHhcC
Q 008185          519 LLPLIWIHNVP  529 (574)
Q Consensus       519 ll~l~~~~~vp  529 (574)
                      +++++...+++
T Consensus       364 ~~~~~~~~~~~  374 (375)
T TIGR00899       364 IVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHheec
Confidence            45555555554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.94  E-value=1.7e-24  Score=234.18  Aligned_cols=363  Identities=10%  Similarity=-0.056  Sum_probs=217.4

Q ss_pred             chhHHHHHHHHHHH-hhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhh-hhhhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWV-QGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPM-VAKPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~-~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~-~~~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|.++..+.+..+. .+.........+ .+.+++|.+..+.+++.+++.+.. ..+|++|+++||+     +||+.++.+
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~   90 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFK-ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-----GCRPVVIAG   90 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHH-HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-----CchHHHHhh
Confidence            66566544444322 111112222333 456779999999999999987765 4589999999985     456666667


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHH
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMA-CVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGY  269 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~  269 (574)
                      .++..+...++++..+    ++.+++ .|++.+++.+.......+++.|..+ ++|+.+.++.+.+..+|..++|.+++.
T Consensus        91 ~~~~~~~~~~~~~~~~----~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~  165 (455)
T TIGR00892        91 GLLASLGMILASFSSN----VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQY  165 (455)
T ss_pred             HHHHHHHHHHHHHhhh----HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            6666666665555432    344443 4677777776554455567778775 789999999999999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHHHHHHHhhh-cccccccc-cccc-hh----cchhhh-hhhhHHHHHHHH--HHHHcchhhHH
Q 008185          270 FLLKTPPTTMFLVFAVLLSLQLAISFS-AREESLGL-AQVS-YQ----NVASKS-IAQSIKKQFSDL--IATIGEESISY  339 (574)
Q Consensus       270 l~~~~gwr~~f~i~ai~~~~~~~~~~~-lpEt~~~~-~~~~-~~----~~~~~~-~~~~~~~~~~~~--~~~~~~~~v~~  339 (574)
                      +.+..|||+.|++.+++.++..+..++ .++...+. .+.+ ++    +...++ ......+..++.  .+.+++|.++.
T Consensus       166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (455)
T TIGR00892       166 LFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLV  245 (455)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHH
Confidence            999899999999998877665544433 33221100 0000 00    000000 000001111111  24567787765


Q ss_pred             HHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHHH--HHHHHHH
Q 008185          340 PLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKV--PLRKLVGAVQ--ILYASSL  415 (574)
Q Consensus       340 ~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~--~~r~ll~~~~--ll~~~~~  415 (574)
                      .....++...........++.|.. .+|+++.+.++.....+++.+++.++.+++.+|.  +.++...+..  ++..+..
T Consensus       246 ~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~  324 (455)
T TIGR00892       246 YLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTH  324 (455)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHH
Confidence            554443322222222222233444 4799999999988888888888888888888763  3333322222  2111111


Q ss_pred             hHHHHhhhhhhcccCcCcceEEeehhHHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008185          416 LLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLA  494 (574)
Q Consensus       416 l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~  494 (574)
                      +   .+..       ..+.+..+.. .+..+++. ....+...++.+..|++.+|+.+|++++..++|+.+||.++|.+.
T Consensus       325 l---l~~~-------~~~~~~~~i~-~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~  393 (455)
T TIGR00892       325 L---LCAL-------AGDYTGLVIY-CIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV  393 (455)
T ss_pred             H---HHHH-------hchHHHHHHH-HHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence            1   1110       0111111111 12222222 222334567788999999999999999999999999999999988


Q ss_pred             HhhC
Q 008185          495 SLTG  498 (574)
Q Consensus       495 ~~~g  498 (574)
                      +..|
T Consensus       394 ~~~g  397 (455)
T TIGR00892       394 DATK  397 (455)
T ss_pred             hhcC
Confidence            8764

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.94  E-value=5.1e-25  Score=231.08  Aligned_cols=345  Identities=13%  Similarity=-0.024  Sum_probs=228.9

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACV  218 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (574)
                      .+++++|.+..+.+++.+++.++..+ .|++|+++||+     +||+.+.++.++..++..+.++..+    ++.++++|
T Consensus        19 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~   89 (399)
T TIGR00893        19 MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-----GARKTLAVFIVIWGVFTGLQAFAGA----YVSLYILR   89 (399)
T ss_pred             HHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-----CcceeeHHHHHHHHHHHHHHHHHcC----HHHHHHHH
Confidence            46778999999999999999998766 88999999985     4555666677766666666665542    56778899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh-hhc
Q 008185          219 LLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS-FSA  297 (574)
Q Consensus       219 ~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~-~~l  297 (574)
                      ++.+++.+...+...+++.|..++++|++++++......+|.++||.+++++.+..+||+.|++.+++.++..++. ++.
T Consensus        90 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (399)
T TIGR00893        90 VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFI  169 (399)
T ss_pred             HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhhee
Confidence            9999998888888889999999999999999999999999999999999999999999999999988877666654 456


Q ss_pred             ccccccccccchhcch--hhh------hhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCC
Q 008185          298 REESLGLAQVSYQNVA--SKS------IAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNIN  369 (574)
Q Consensus       298 pEt~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s  369 (574)
                      ||++.......+++.+  .+.      ..+..++.....++.+++|.++...+..++...........++.|..+.+|++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (399)
T TIGR00893       170 PDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLS  249 (399)
T ss_pred             cCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc
Confidence            6654322111100000  000      00000001122345567777766555444422222223333455667778999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHH
Q 008185          370 PSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRK--LVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETL  447 (574)
Q Consensus       370 ~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~--ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~  447 (574)
                      +.+.++......++.+++..+.+++.||+++|+  +.... .......+.........+  . .+..+..+. .......
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~~~~  324 (399)
T TIGR00893       250 ILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFAR-KTAIIAGLVLSLLMFATN--Y-VNIPYAALA-LVALGFF  324 (399)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HHHHHHHHHHHHHHHHhc--c-chhHHHHHH-HHHHHHh
Confidence            989999888888888888888888888888775  21111 111111110000000000  0 011111111 1111111


Q ss_pred             HHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          448 AQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       448 ~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      +.....+...+.+|..|++.||+++|+.+.+.++|..++|.+.|.+.+..|
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       325 GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             chhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence            112233346778999999999999999999999999999999999988765

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.94  E-value=1.8e-24  Score=236.36  Aligned_cols=368  Identities=11%  Similarity=0.038  Sum_probs=233.7

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|.....+.+.++...++. ......+ .+.+++|+++.+.+++.+.+.++..+ .|+.|+++||+     +||+.+..+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~   91 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITLVLT-EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-----GRRLAMVIS   91 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHH
Confidence            4556665777777777765 4444444 56778999999999999999888766 78899999985     566667677


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++..+.++..+    ++.+++.|++.+++.+.......+++.|..++++|+.++++...+..+|.+++|.+++++
T Consensus        92 ~~~~~~~~~~~~~~~~----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  167 (496)
T PRK03893         92 IVLFSVGTLACGFAPG----YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV  167 (496)
T ss_pred             HHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777776665532    566788899999888887777788999999999999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhh----HHHHHH---------HHHHHHcc---
Q 008185          271 LLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQS----IKKQFS---------DLIATIGE---  334 (574)
Q Consensus       271 ~~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~----~~~~~~---------~~~~~~~~---  334 (574)
                      .+..+||+.|++.++..++..+....+||++....+.+++. +.++..+.    .++...         .....+..   
T Consensus       168 ~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (496)
T PRK03893        168 VPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKA-PVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQ  246 (496)
T ss_pred             hccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccc-cchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999998864443332222345676543211100000 00000000    000000         00000000   


Q ss_pred             h------------------------hhHHH--HHHHHhHhhhccc--ccccceeehccccCCCchhHHHHHHHHHHHHHH
Q 008185          335 E------------------------SISYP--LTWLVASVAMVPV--LSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLS  386 (574)
Q Consensus       335 ~------------------------~v~~~--~l~~~l~~~~~~~--~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~li  386 (574)
                      +                        ..+..  ...........+.  ....++.|..+.+|+++.+.|+......++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~  326 (496)
T PRK03893        247 NAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAV  326 (496)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence            0                        00000  0000000000010  112235566678999999999999999999999


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCC
Q 008185          387 LTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQG  466 (574)
Q Consensus       387 g~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~  466 (574)
                      +..+.+++.||+++|+.+..+.++..+..+. +.....       ...+.......+....+.........++++.+|++
T Consensus       327 g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (496)
T PRK03893        327 GCCVGGFLGDWLGTRKAYVCSLLISQLLIIP-VFAIGG-------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE  398 (496)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-Hhhccc-------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH
Confidence            9999999999999998877665444332221 111100       01111101111111122111222345678999999


Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          467 CEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       467 ~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      .+|+++|++++..++|..+||.++|.+.+.+|+
T Consensus       399 ~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~  431 (496)
T PRK03893        399 QRAAGLGFTYNVGALGGALAPILGALIAQRLDL  431 (496)
T ss_pred             HhhcccchhhhhhhHHHHHHHHHHHHHhccCCh
Confidence            999999999999999999999999999998764

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.94  E-value=1.5e-24  Score=231.72  Aligned_cols=365  Identities=11%  Similarity=0.004  Sum_probs=239.8

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|...+.+++.+++++++- ......+ .+++++|++..+.+++.+++.+++.+ +++.|+++||+     +||+.+.++
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----G~r~~~~~~   79 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-----GARRWIAGI   79 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-----ChHHHHHHH
Confidence            5777777888888888876 4444444 67888999999999999999998876 78899999985     566677777


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++..+.++.++    +..+++.|++.+++.+...+....++.|..++++|+.++++++.+..+|.++|+.+++++
T Consensus        80 ~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  155 (412)
T TIGR02332        80 MVLWGIASTATMFATG----PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI  155 (412)
T ss_pred             HHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777776666533    567788999999888877666667789999999999999999999999999999999988


Q ss_pred             hc------cCChhHHHHHHHHHHHHHHHHh-hhccccccccc---ccchhcchh----hh-----hh---hhHHHHHHHH
Q 008185          271 LL------KTPPTTMFLVFAVLLSLQLAIS-FSAREESLGLA---QVSYQNVAS----KS-----IA---QSIKKQFSDL  328 (574)
Q Consensus       271 ~~------~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~---~~~~~~~~~----~~-----~~---~~~~~~~~~~  328 (574)
                      .+      ..|||++|++.++..++..++. +++||++....   +.+++...+    ..     ..   ...+...+..
T Consensus       156 ~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
T TIGR02332       156 LALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSM  235 (412)
T ss_pred             HhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Confidence            64      3699999999888877665554 57888874321   100000000    00     00   0000001111


Q ss_pred             HHHHcchhhHHHHHHHHhHhhhcccccccceeehcc-ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH-H
Q 008185          329 IATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQ-CLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVG-A  406 (574)
Q Consensus       329 ~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~-~  406 (574)
                      ++.+.+|.++...+..++.......+...+|.++.+ ..|+++.+.+.......++.+++..+.+++.||+++|+... .
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~  315 (412)
T TIGR02332       236 LREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTAL  315 (412)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHH
Confidence            222335665554443333222222333445556655 35778888888888888999999999999999998776533 2


Q ss_pred             HHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHH
Q 008185          407 VQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIA  485 (574)
Q Consensus       407 ~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~l  485 (574)
                      ..++..+ .+.   +...      ..+....+. ..+....+.....+. .+...+..|++.+|+++|+.+...++|.++
T Consensus       316 ~~~~~~~-~~~---~~~~------~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~  384 (412)
T TIGR02332       316 PYLFAAA-GWL---LASA------TDHNLIQLL-GIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSAL  384 (412)
T ss_pred             HHHHHHH-HHH---HHHh------cCCHHHHHH-HHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhh
Confidence            2222222 111   1110      011111000 011111111111222 233456789999999999999999999999


Q ss_pred             HHHHHHHHHHhhC
Q 008185          486 SGFLGVGLASLTG  498 (574)
Q Consensus       486 g~~i~g~l~~~~g  498 (574)
                      +|.+.|.+.+..|
T Consensus       385 ~p~~~g~i~~~~g  397 (412)
T TIGR02332       385 SPFLIGILKDATG  397 (412)
T ss_pred             hhhhcccccccCC
Confidence            9999998888654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.94  E-value=1.3e-23  Score=228.48  Aligned_cols=394  Identities=14%  Similarity=0.089  Sum_probs=243.8

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccc-
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAK-  209 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~-  209 (574)
                      +....+..|+++.+|+++.++|.+..+..+-.++ +|++|.++||.+++.+|||||++.+.+..++++.++...++... 
T Consensus        24 ~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~  103 (473)
T PRK10429         24 IVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGT  103 (473)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCcc
Confidence            3344455688898999999999999988776554 99999999998777668899999998888887766654432211 


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccCccchHHHHHHHHHHHHHHHHHHHHHhhc-------cCChhHHH
Q 008185          210 -ALPNLMACVLLSNLGASITEVAKDALVAEYGQ-KNGIVGLQSYAFMAAASGGILGNLFGGYFLL-------KTPPTTMF  280 (574)
Q Consensus       210 -~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~-~~~rg~~~s~~~~~~~~G~~igp~igg~l~~-------~~gwr~~f  280 (574)
                       .+.++++..++..++.+..+++..++.+|+++ ++||.++.++.+.+..+|..+++.++..+.+       ..+|++..
T Consensus       104 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~  183 (473)
T PRK10429        104 AQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFT  183 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence             12233444455577888888899999999994 6899998887667667776666555443321       23688888


Q ss_pred             HHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccce
Q 008185          281 LVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMF  359 (574)
Q Consensus       281 ~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~  359 (574)
                      ++.+++.++..++. +..||++.+.....+     +..+.+.++.+   +.+++||.++..++..++.+..........+
T Consensus       184 ~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~-----~~~~~~~~~~~---~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~  255 (473)
T PRK10429        184 LVLIAFFIVSTIITLRNVHEVYSSDNQVSA-----EGSHLTLKDIV---ALIYKNDQLSCLLGMALAYNIASNIINGFAI  255 (473)
T ss_pred             HHHHHHHHHHHHHHHcCceecCCccccccc-----cccCCCHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            88877777666555 457886432110000     00011233332   2345777776655544442322223333344


Q ss_pred             eehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEee
Q 008185          360 CYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLC  439 (574)
Q Consensus       360 ~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~  439 (574)
                      ||.+...+ ++...++......++.+++.++.+++.||+++|+.+.++.++..+..+.......     ....+.+..+.
T Consensus       256 y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i  329 (473)
T PRK10429        256 YYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL-----AAPHNALLIVI  329 (473)
T ss_pred             eEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-----cCchhHHHHHH
Confidence            55554444 4556666666667888888899999999999999987776554433332211100     00011111111


Q ss_pred             hhHHHHHHHHhhHHHHHHHHHhhcC-------CChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCC---h--
Q 008185          440 FAGLAETLAQFKLLPFSMLLARLCP-------QGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSS---L--  507 (574)
Q Consensus       440 ~~~l~~~~~~~~~~p~~~l~~~~~p-------~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~---l--  507 (574)
                      ...+.............++++|.++       ++.+|..+|..+.+.++|.++++.+.|.+.+..|++.+.-+.   +  
T Consensus       330 ~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~~~~~q~~~~~~~  409 (473)
T PRK10429        330 AGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYVPNVEQSAQTLLG  409 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHH
Confidence            1112111112222333456677654       567899999999999999999999999999999986432111   1  


Q ss_pred             --hHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHH
Q 008185          508 --PVGIVIQFLAALLPLIWI-HNVPMSETIIEKGR  539 (574)
Q Consensus       508 --~~~~li~~~~~ll~l~~~-~~vp~~~~~~~~~~  539 (574)
                        .....+.+++.+++++++ .++|-++++.+|.+
T Consensus       410 i~~~~~~~p~~~~~~~~~~~~~~y~l~~~~~~~i~  444 (473)
T PRK10429        410 MQFIMIGLPTLFFMITLVLYFRYYRLNGDFLRRIQ  444 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheeCCHHHHHHHH
Confidence              122233444444555544 57888887766533

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.94  E-value=1.8e-23  Score=221.52  Aligned_cols=363  Identities=15%  Similarity=0.052  Sum_probs=227.0

Q ss_pred             HHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhhhheeeccccccC-CCccchhHhHHHHHH
Q 008185          117 LVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIG-GAHRIPYICIGVFLQ  194 (574)
Q Consensus       117 ~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~~~-G~rRk~~l~i~~~~~  194 (574)
                      ...+...|+.||+.. +..+.++.++++ .|.|.+++|+. ++..+++.++++++|+.|++... .+|||.+++...++.
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~-~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFL-PLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHH-HHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence            344777899999985 777777777776 69999999987 44445666666666666664222 236666655443433


Q ss_pred             HHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 008185          195 ILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKT  274 (574)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~  274 (574)
                      .++...++..........+++...++.++..+..|+..|++..|..++++++...+....+..+|.++|+...+++.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~  160 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF  160 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            32333333221111112233444555667788899999999889888777777777777777889999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccc
Q 008185          275 PPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVL  354 (574)
Q Consensus       275 gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~  354 (574)
                      |||..|++.+++.++..+..++++|++.+..+.       +      ++..++.++.+++|.++......++........
T Consensus       161 gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~  227 (390)
T TIGR02718       161 GQRPAFLLVACVPLASLVCVLWLKDRAVASPEA-------P------LARRASLFRFFRRPLAWSLLALALLSAMTAVSG  227 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCcCcccc-------c------hhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence            999999999988877666655555443211100       0      001123455677887766555444421111112


Q ss_pred             cccceeehccccCCCchhHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCc
Q 008185          355 SGSMFCYQTQCLNINPSVIGMSRVIGQ-SMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPN  433 (574)
Q Consensus       355 ~~~~~~~~~~~~g~s~~~~gl~~i~~~-ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~  433 (574)
                      ....+.|..+ .|+++++.|+...... ++.+++..+.+++.||+++|+.+..+.++.+...+........    ...+.
T Consensus       228 ~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~  302 (390)
T TIGR02718       228 FGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF----WLAPG  302 (390)
T ss_pred             HHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc----ccCCc
Confidence            2222335554 7999999999866554 5677788889999999999998877655443322221111100    00111


Q ss_pred             ceEEeehhHHHHHHHHhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          434 EVFVLCFAGLAETLAQFKLLPFSMLLARLCPQ-GCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       434 ~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~-~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      .........+.....+....+......+.+++ +.+|+.+++.++..++|..+||.++|.+.+..|+
T Consensus       303 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~  369 (390)
T TIGR02718       303 IAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGY  369 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            11101111111111223333444555666766 8899999999999999999999999999998874

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=4.8e-25  Score=224.50  Aligned_cols=366  Identities=14%  Similarity=0.075  Sum_probs=255.8

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|++.+.+.++|...++.= -...+.| .+.++.++|.+++|++.+.+.+.|.+ +.++|.+|||.     +-|.++..+
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p-~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-----npr~fm~~g  100 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMP-ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-----NPRYFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-----CCceeehHH
Confidence            6777777778887666543 4556666 45666889999999999999999988 88999999984     566677778


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHH--H
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFG--G  268 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~ig--g  268 (574)
                      .++++++.+++++.++    +..+.++.++.++.-+...++....++..++++|||+..++++.+-++|+.+.|++.  +
T Consensus       101 Lilsai~nil~Gfs~s----~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la  176 (448)
T COG2271         101 LILSAIVNILFGFSPS----LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA  176 (448)
T ss_pred             HHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHH
Confidence            8889999988888752    555666677776666666666678889999999999999999999999999999999  8


Q ss_pred             HhhccCChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcc-----hh-hhhhh----hHHHHHHHHHHHHcchhh
Q 008185          269 YFLLKTPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNV-----AS-KSIAQ----SIKKQFSDLIATIGEESI  337 (574)
Q Consensus       269 ~l~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~-----~~-~~~~~----~~~~~~~~~~~~~~~~~v  337 (574)
                      ++..+.+||..|++-+++++++.++. +.++++|.....++-++.     +. +..++    +.++..  .+..++||.+
T Consensus       177 ~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~--~~YVL~Nk~i  254 (448)
T COG2271         177 FFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIF--VKYVLKNKLI  254 (448)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHH--HHHHHcChHH
Confidence            88888899999999999998888775 467887754332211110     00 00000    112222  2236899999


Q ss_pred             HHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHH
Q 008185          338 SYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKV--PLRKLVGAVQILYASSL  415 (574)
Q Consensus       338 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~--~~r~ll~~~~ll~~~~~  415 (574)
                      |.+++.-++.|.+-+....-.|.|..+..|+|....+......=++.+.|+.+.+++.||.  ++|....+.+.+.....
T Consensus       255 W~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~  334 (448)
T COG2271         255 WLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITAS  334 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            9887655555776666666677888999999998888877777777777777777777764  34544333322222222


Q ss_pred             hHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHH---HHHHhhcCCChhHHHHHHHHHHHHh-HHHHHHHHHH
Q 008185          416 LLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFS---MLLARLCPQGCEGSLTSFSASALCL-SSIASGFLGV  491 (574)
Q Consensus       416 l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~---~l~~~~~p~~~~gt~~gl~~~~~~l-g~~lg~~i~g  491 (574)
                      +...++         .++.-+. ....+...+|...+.|-+   ....|..|++..|++.|+...+..+ |.+.+....|
T Consensus       335 ~~~~w~---------~~~~~~~-l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g  404 (448)
T COG2271         335 LVLYWL---------APNGSYL-LDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLG  404 (448)
T ss_pred             HHHHHc---------CCCccHH-HHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcce
Confidence            221111         1222111 111222223333344432   3467899999999999999999998 7788888878


Q ss_pred             HHHHhhCcc
Q 008185          492 GLASLTGIT  500 (574)
Q Consensus       492 ~l~~~~g~~  500 (574)
                      .+.|.+|+.
T Consensus       405 ~i~d~~gW~  413 (448)
T COG2271         405 YIADTWGWD  413 (448)
T ss_pred             eeEecCCCc
Confidence            887776653

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.94  E-value=6.2e-24  Score=224.59  Aligned_cols=338  Identities=13%  Similarity=0.066  Sum_probs=226.1

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +.+.++..++.. .....++ .+++++|++..+.++..+.+.++..+ +|++|+++||+     +||+.+.++.++..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~   81 (382)
T PRK10091          8 LALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-----SLKHILLFLVALCVIG   81 (382)
T ss_pred             HHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-----ccHHHHHHHHHHHHHH
Confidence            455556556554 4444444 46777999999999999999998876 88999999984     6777787788888888


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPT  277 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr  277 (574)
                      ..+.+..++    ++.+++.|++.+++.+...+.....+.|..++++|++++++...+..+|..+||.+++++.+..|||
T Consensus        82 ~~l~~~~~~----~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr  157 (382)
T PRK10091         82 NAMFTLSSS----YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWR  157 (382)
T ss_pred             HHHHHHhCc----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHH
Confidence            777766643    5778889999988877766666777888888888999999998989999999999999999889999


Q ss_pred             HHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccc
Q 008185          278 TMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSG  356 (574)
Q Consensus       278 ~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~  356 (574)
                      ++|++.+++.++..+.. +++||.+....         .    ..++.    ++.++++..+......++.+........
T Consensus       158 ~~f~~~~~~~~~~~~~~~~~lp~~~~~~~---------~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (382)
T PRK10091        158 YTFLLIAVFNIAVLASIYFWVPDIRDEAK---------G----GLREQ----FHFLRSPAPWLIFAATMFGNAGVFAWFS  220 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCcccc---------c----CHHHH----HHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988777666554 46787532110         0    01111    1234566555443333222221111122


Q ss_pred             cceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceE
Q 008185          357 SMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVF  436 (574)
Q Consensus       357 ~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~  436 (574)
                      ..+.++.+.+|+++.+.++......++.+++..+.+++.||+++++++..+.++.++..+.......         ..+.
T Consensus       221 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~  291 (382)
T PRK10091        221 YIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGG---------MKTA  291 (382)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHh---------hHHH
Confidence            2233455668999999999998899999999999999999999998887776655444322111110         0111


Q ss_pred             EeehhHHHHHHHH-hhHHHHHHH-HHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008185          437 VLCFAGLAETLAQ-FKLLPFSML-LARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASL  496 (574)
Q Consensus       437 ~l~~~~l~~~~~~-~~~~p~~~l-~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~  496 (574)
                      .+.. .+....+. ....|.... ..+..|++..+..  ..+...++|.++||.++|.+.+.
T Consensus       292 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~  350 (382)
T PRK10091        292 SLIF-AFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTL  350 (382)
T ss_pred             HHHH-HHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHc
Confidence            1111 11111111 112233322 3333444555554  34677899999999999999885

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.1e-23  Score=221.36  Aligned_cols=388  Identities=17%  Similarity=0.128  Sum_probs=271.5

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCcc--
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAA--  208 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~--  208 (574)
                      +...-+.+++.|.+|+++..+|.++.+.-+-.++ +|+.|.++||.+.+.+|||||++.+.+..++...++...++..  
T Consensus        30 ~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~  109 (467)
T COG2211          30 IVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMT  109 (467)
T ss_pred             HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccC
Confidence            4445566788999999999999999888776555 9999999999988877999999999888888888777776422  


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCccchHHHHHHHHHHHHHHHHHHHHHhhc-------cCChhHHH
Q 008185          209 KALPNLMACVLLSNLGASITEVAKDALVAEYGQK-NGIVGLQSYAFMAAASGGILGNLFGGYFLL-------KTPPTTMF  280 (574)
Q Consensus       209 ~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~-~~rg~~~s~~~~~~~~G~~igp~igg~l~~-------~~gwr~~f  280 (574)
                      .......+..++.+++.+..+++..++.++++++ +||.+..+....+..+|..+..++.+.+..       ..||+.+.
T Consensus       110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~  189 (467)
T COG2211         110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTA  189 (467)
T ss_pred             cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHH
Confidence            1233345566777889999999999999999865 899999998888888886666555554442       35899888


Q ss_pred             HHHHHHHHHHHHHhh-hcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccce
Q 008185          281 LVFAVLLSLQLAISF-SAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMF  359 (574)
Q Consensus       281 ~i~ai~~~~~~~~~~-~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~  359 (574)
                      ++.++++.+..+.++ -++|++.+....+      .+.+...+   ..+...++||.....++..++.+.......+.+.
T Consensus       190 ~~~~vi~~i~~l~~~~~v~ER~~~~~~~~------~~~~~~~~---~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~  260 (467)
T COG2211         190 LVLGVIGVILLLFCFFNVKERVVETQPTK------TGVKLKLK---DSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMV  260 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCccccCc------ccccccHH---HHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            888888877777765 4899875332110      00111122   2233356777776666544443444444455667


Q ss_pred             eehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEee
Q 008185          360 CYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLC  439 (574)
Q Consensus       360 ~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~  439 (574)
                      ||.+..+|.++....+.......+.+++..++.++.+|+++|+++.++.++.++..+..++..        ..+..+.++
T Consensus       261 yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~--------~~~~~l~~~  332 (467)
T COG2211         261 YYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP--------AGSVVLIVV  332 (467)
T ss_pred             eeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc--------CcchHHHHH
Confidence            888888998888888888888889999899999999999999999999887777665433221        111222222


Q ss_pred             hhHHHHHHHHhhHHHH-HHHHHhh-------cCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCC-CCChh--
Q 008185          440 FAGLAETLAQFKLLPF-SMLLARL-------CPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGD-YSSLP--  508 (574)
Q Consensus       440 ~~~l~~~~~~~~~~p~-~~l~~~~-------~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~-~~~l~--  508 (574)
                      ...+. .++.....+. +++++|.       ..++.+|..+|.++.+.++|.+++..+.|++.+..|+.++. -+...  
T Consensus       333 ~~~i~-~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~~~Q~~~al  411 (467)
T COG2211         333 ALIIA-GVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQSASAL  411 (467)
T ss_pred             HHHHH-HHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCHHHH
Confidence            21222 2221111111 2333332       46788999999999999999999999999999999987654 23222  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 008185          509 -----VGIVIQFLAALLPLIWIHNVPMSETIIEK  537 (574)
Q Consensus       509 -----~~~li~~~~~ll~l~~~~~vp~~~~~~~~  537 (574)
                           .++++.+++.++.++.+.+.|-+++..++
T Consensus       412 ~gI~~~~~~~Pa~l~l~~~i~~~~y~L~~~~~~~  445 (467)
T COG2211         412 FGIRFLFIILPALLLLLAAIIIFFYKLNEKMHKE  445 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence                 33445555666666667788888776654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=1.1e-23  Score=224.06  Aligned_cols=330  Identities=16%  Similarity=0.171  Sum_probs=219.0

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccch
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKA  210 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~  210 (574)
                      ...+.++.++++++|.|+.+.|+..+.+.++.. ++|+.|+++||+     +||+.+.++..+..++...+...+ +   
T Consensus        28 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-----g~k~~l~~~~~~~~~~~~~~~~~~-~---   98 (400)
T PRK11646         28 VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-----GAKPMIVTGMLMRAAGFATMAIAH-E---   98 (400)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-----CchHHHHHHHHHHHHHHHHHHHhc-c---
Confidence            344555557778899999999999999888764 489999999985     567777778777777777666543 2   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 008185          211 LPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQ  290 (574)
Q Consensus       211 ~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~  290 (574)
                      .+.+++.|++.+++.+...+...+++.|..++++|++++++......+|..+||.++|++. ..|||+.|++.++..++.
T Consensus        99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~  177 (400)
T PRK11646         99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLA  177 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence            5667788999888888777777888999999999999999999999999999999999998 679999999988777665


Q ss_pred             HHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCC
Q 008185          291 LAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNIN  369 (574)
Q Consensus       291 ~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s  369 (574)
                      .++. +++||.+....            .++.++   .+++.+++|.++...+..+..+.........+|.|.++..+ +
T Consensus       178 ~i~~~~~~~~~~~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~  241 (400)
T PRK11646        178 AAFNAWLLPAYKLSTV------------RTPVRE---GMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-S  241 (400)
T ss_pred             HHHHHHhCCccccccc------------chhhHH---HHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-C
Confidence            5443 45666321110            011111   23344667776554333222111111112234556665444 6


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHH
Q 008185          370 PSVIGMSRVIGQSMLLSLTVFYDRYW-KKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLA  448 (574)
Q Consensus       370 ~~~~gl~~i~~~ig~lig~~l~~~l~-~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~  448 (574)
                      +.+.|+.+....++.+.+....+++. +|++.++.+..+.++..+..+. +...         ++.+.... ..+....+
T Consensus       242 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-l~~~---------~~~~~~~~-~~~l~~~g  310 (400)
T PRK11646        242 PSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFP-IGMV---------SNLQQLFT-LICLFYIG  310 (400)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH-HHHh---------hhHHHHHH-HHHHHHHH
Confidence            77888877666665554444445554 5566555555554444433221 1111         11111111 11111222


Q ss_pred             HhhHHH-HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          449 QFKLLP-FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       449 ~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      .....| ..++..+..|++.+|+++|+++...++|.++||.++|.+.+..+
T Consensus       311 ~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        311 SIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence            222333 35778899999999999999999999999999999999999753

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.93  E-value=2.1e-23  Score=219.56  Aligned_cols=343  Identities=20%  Similarity=0.166  Sum_probs=228.8

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +....+...+.. +..+..+ .+.+++|.++.+.+++.+.+.++..+ +|++|+++||+     +||+++..+.++..++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~~~   83 (385)
T TIGR00710        10 LGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-----GRRPVLLLGLFIFALS   83 (385)
T ss_pred             HHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-----CChHHHHHHHHHHHHH
Confidence            344444444443 3444444 56777999999999999999988766 88999999985     5677777777777777


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPT  277 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr  277 (574)
                      ..+....++    .+.+++.|++.+++.+...+...+++.|..++++|++++++.+....+|..+||.+++++.+..+||
T Consensus        84 ~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  159 (385)
T TIGR00710        84 SLGLALSNN----IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWH  159 (385)
T ss_pred             HHHHHHHcc----HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            766655532    5667888999999988888888999999999999999999999999999999999999999889999


Q ss_pred             HHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccc
Q 008185          278 TMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSG  356 (574)
Q Consensus       278 ~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~  356 (574)
                      ++|++.++..++..+.. ++.||++....+.            ..++..+..++.+++|.++...+...+.+........
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (385)
T TIGR00710       160 AIFAFLSLAGILLSALIFFILPETLPYEARI------------QISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFS  227 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCcccC------------CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence            99999888777666654 4577764322110            0111223344556777776654433332222222233


Q ss_pred             cceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceE
Q 008185          357 SMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVF  436 (574)
Q Consensus       357 ~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~  436 (574)
                      ..+.+..+.+|+++.+.|+......++.+++..+.+++.+|+++|+.+..+.++..+..+....... .    ..+ .+.
T Consensus       228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~-~~~  301 (385)
T TIGR00710       228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI-L----GLG-SWA  301 (385)
T ss_pred             cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-h----ccc-hHH
Confidence            3455666789999999999988888999999999999999999998877665554443332211110 0    000 111


Q ss_pred             EeehhHHHHHHHHhhHHH-HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHH
Q 008185          437 VLCFAGLAETLAQFKLLP-FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGV  491 (574)
Q Consensus       437 ~l~~~~l~~~~~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g  491 (574)
                      ......+..+++.....+ ......|..| +.+|++.++.+.....++.+.+.+.+
T Consensus       302 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       302 MIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111222222222 2344556665 67899999999888765544443333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.93  E-value=5.8e-23  Score=219.51  Aligned_cols=345  Identities=12%  Similarity=0.030  Sum_probs=229.4

Q ss_pred             HHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhh
Q 008185          125 WVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLA  202 (574)
Q Consensus       125 f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~  202 (574)
                      +...+.. +..+.++ .+.+++|.+..+.++..+++.+++.+ +|++|+++||+     +||++++.+.++..++..+.+
T Consensus        26 ~~~~~~~~~~~p~l~-~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~l~~~~~~~~~~~~~~~   99 (413)
T PRK15403         26 FAAYLTTDLIQPGII-NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-----GRRPVLITGALIFTLACAATL   99 (413)
T ss_pred             HHHHHHHHhhccCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-----CchHHHHHHHHHHHHHHHHHH
Confidence            3333433 5555555 46778999999999999999998866 88999999985     567777777777777777666


Q ss_pred             cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 008185          203 LFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLV  282 (574)
Q Consensus       203 ~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i  282 (574)
                      ..++    ++.++++|++++++.+.......+.+.|..++++|++++++......+|+++||++++++.+..|||+.|++
T Consensus       100 ~a~~----~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403        100 FTTS----MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             HcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            5532    567889999998887765555667788998888899999999999999999999999999988899999999


Q ss_pred             HHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceee
Q 008185          283 FAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCY  361 (574)
Q Consensus       283 ~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~  361 (574)
                      .++..++..+.. +++||++....+    +   .    ..+...++.++.++||.++...+..++.+.....+....|++
T Consensus       176 ~~~~~~i~~~~~~~~lp~~~~~~~~----~---~----~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~  244 (413)
T PRK15403        176 IAVMGLIAFVGLLLAMPETVKRGAV----P---F----SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVI  244 (413)
T ss_pred             HHHHHHHHHHHHHHhCCCCccccCC----C---C----ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            988877766553 468887532110    0   0    111223455567889988876655444333333333445667


Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      .++.+|+++.+.|+..+...++.+++..+.+++.+|...++.......+..++.++. .....    . .++.+......
T Consensus       245 l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~-~~~~~----~-~~~~~~~~~~~  318 (413)
T PRK15403        245 LIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALL-IVGNL----L-WPHVWLWSVLG  318 (413)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHH-HHHHH----H-ccccHHHHHHH
Confidence            788899999999999888888888888888888766555554332222221111111 11000    0 01111111111


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008185          442 GLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASL  496 (574)
Q Consensus       442 ~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~  496 (574)
                      ....+.+.....|...-.+.......+|++.|+++..+..+..+++..++.+.+.
T Consensus       319 ~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        319 TSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1112223233333322122222233579999999999999999999999887765

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.93  E-value=3.3e-23  Score=219.58  Aligned_cols=330  Identities=16%  Similarity=0.123  Sum_probs=219.1

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccch
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKA  210 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~  210 (574)
                      +....++ .+.+++|.+..+.++..+++.++..+ .|+.|+++||+     +||++++++.++..++.......++    
T Consensus        21 ~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----g~r~~l~~~~~~~~i~~~~~~~~~~----   90 (392)
T PRK10473         21 MYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-----GRKPVAIPGAALFIIASLLCSLAET----   90 (392)
T ss_pred             HHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-----CChHHHHHHHHHHHHHHHHHHHhCc----
Confidence            3334454 45667999999999999999988766 88999999985     5677777777777777766655432    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 008185          211 LPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQ  290 (574)
Q Consensus       211 ~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~  290 (574)
                      ...+++.|++.+++.+.......+++.|..++++|++++++.+....+|.+++|.+++.+.+..|||+.|++.+++.++.
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~  170 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILV  170 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHH
Confidence            45567889998888887777778899999999999999999999889999999999999888889999999998887776


Q ss_pred             HHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCC
Q 008185          291 LAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNIN  369 (574)
Q Consensus       291 ~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s  369 (574)
                      .++. +++||++....+ + +    ..    .   .++.++.++++.++...+...+.+.....+....+++..+.+|++
T Consensus       171 ~~~~~~~~~~~~~~~~~-~-~----~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  237 (392)
T PRK10473        171 LLLSLFILKETRPARAP-A-A----SS----K---PRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFS  237 (392)
T ss_pred             HHHHHHHcCCCCCcccC-C-c----cc----h---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCC
Confidence            6654 567886532210 0 0    00    0   112223456666554433332222211122223345566778999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHH
Q 008185          370 PSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQ  449 (574)
Q Consensus       370 ~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~  449 (574)
                      +.+.+.......++.+++..+.+++.||+++|+.+..+.++..+..+... .....        ....+....+.  .+ 
T Consensus       238 ~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~l~~--~g-  305 (392)
T PRK10473        238 RGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA-LSPSH--------AVSLFGITLIC--AG-  305 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHH--------HHHHHHHHHHH--HH-
Confidence            99999988888889999999999999999999988777665544433221 11100        00001111111  11 


Q ss_pred             hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          450 FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       450 ~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      ...........+..|.+.++   |...+...+++.+|+.+++++.+.+|.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~  352 (392)
T PRK10473        306 FSVGFGVAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGI  352 (392)
T ss_pred             HHHHhHHHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            11111123334555654443   344455667888888888888888774

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.93  E-value=1.5e-23  Score=222.55  Aligned_cols=371  Identities=15%  Similarity=0.054  Sum_probs=226.4

Q ss_pred             hhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHH
Q 008185          114 KQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGV  191 (574)
Q Consensus       114 ~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~  191 (574)
                      |.+.. +.+.++...+.. +..+.++.++++++|.|+.+.+++.+++.+++.+ +|+.|+++||+     +||+.+.++.
T Consensus        15 ~~~~~-l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-----g~r~~l~~~~   88 (399)
T PRK05122         15 LRIVS-IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-----GPKKAVVFGL   88 (399)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-----CCcchHHHHH
Confidence            33444 555556656655 6666677678888999999999999999998766 89999999985     5666666666


Q ss_pred             HHHHHHHHHhhccc--Cc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHH
Q 008185          192 FLQILSWGPLALFP--VA--AKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFG  267 (574)
Q Consensus       192 ~~~~~~~~~~~~~~--~~--~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~ig  267 (574)
                      ++.+++...++...  ++  ..++..+++.|++.++|.+...+.....+.|..++++|++++++...+..+|.++||.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  168 (399)
T PRK05122         89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLG  168 (399)
T ss_pred             HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHH
Confidence            65555444333321  11  012456788899999998888777778889999999999999988888889999999999


Q ss_pred             HHhhccCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhH
Q 008185          268 GYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVAS  347 (574)
Q Consensus       268 g~l~~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~  347 (574)
                      +++.+..|||+.+++.+++.++..+.....||++..  + ++    +.    +.++..++.+   ......  .++. +.
T Consensus       169 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~----~~----~~~~~~~~~~---~~~~~~--~~~~-~~  231 (399)
T PRK05122        169 VLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPPV--K-GE----RL----PFRRVLGRVW---PYGMGL--ALAS-IG  231 (399)
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCCC--C-cc----ch----hHHHHHHHHH---HHHHHH--HHHH-HH
Confidence            999999999999988766554333322223332211  0 00    00    1111111111   111000  0111 11


Q ss_pred             hhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhc
Q 008185          348 VAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINL  427 (574)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~  427 (574)
                      +...   ....+.|.. ..|++  ..+.......++.+++..+.+++.+|+++|+.+..+.++..+..+. ....     
T Consensus       232 ~~~~---~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~-~~~~-----  299 (399)
T PRK05122        232 FGTI---ATFITLYYA-ARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLL-LWLA-----  299 (399)
T ss_pred             HHHH---HHHHHHHHH-Hcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHh-----
Confidence            1111   111122232 24543  3345555666777888888899999999888877665544433221 1111     


Q ss_pred             ccCcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCC
Q 008185          428 QFGVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSS  506 (574)
Q Consensus       428 ~~~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~  506 (574)
                          ++.+..+. ..+..+++.....|. .....+..|++.+|+++|+++...++|..+++.+.|.+.+..|+.      
T Consensus       300 ----~~~~~~~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~------  368 (399)
T PRK05122        300 ----PSPWMALI-GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYP------  368 (399)
T ss_pred             ----ccHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------
Confidence                11111111 112222222222333 345678899999999999999999999999999999998876632      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCH
Q 008185          507 LPVGIVIQFLAALLPLIWIHNVPMSE  532 (574)
Q Consensus       507 l~~~~li~~~~~ll~l~~~~~vp~~~  532 (574)
                        ..+.+.+++.+++++....+++++
T Consensus       369 --~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        369 --SIFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhcccc
Confidence              233333344444444444454433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.93  E-value=4.2e-23  Score=221.96  Aligned_cols=356  Identities=14%  Similarity=0.046  Sum_probs=215.6

Q ss_pred             chhHHHHHHHHHHHhhhccchhhhhHHHHHHhcC---CChhHHHHHHHHhhhhhh---h-hhhheeeccccccCCCccch
Q 008185          113 NKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLS---LHPSTLQLVQNSGNLPMV---A-KPLYGILSDALYIGGAHRIP  185 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~---~s~~~~~l~~s~~~l~~~---~-~pl~G~lsD~~~~~G~rRk~  185 (574)
                      ++.......++++...++........+.+.++++   .+..+.+...+++...+.   + ++++|+++||+     +||+
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-----Grr~   94 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-----GRKK   94 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CcHH
Confidence            4444444566777777776223333346677774   555544444444433333   4 56789999995     6777


Q ss_pred             hHhHHHHHHHHHHHHhhcccCcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHH
Q 008185          186 YICIGVFLQILSWGPLALFPVAA----KALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGI  261 (574)
Q Consensus       186 ~l~i~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~  261 (574)
                      .+.++.++..++..+.++.++..    .....++++|+++++|.+...+...+++.|..|+++||.+.++...+..+|.+
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~  174 (432)
T PRK10406         95 SMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQL  174 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Confidence            77778888777777777665421    11235788899999998887777889999999999999999988887788888


Q ss_pred             HHHHHHHHhh--------ccCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHc
Q 008185          262 LGNLFGGYFL--------LKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIG  333 (574)
Q Consensus       262 igp~igg~l~--------~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (574)
                      ++++++..+.        +..|||++|++.+++.++...+...+||++....+.       +.  +  +   .+++++++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~-------~~--~--~---~~~~~l~~  240 (432)
T PRK10406        175 LALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA-------LK--E--A---GSLKGLWR  240 (432)
T ss_pred             HHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh-------hc--c--c---ccHHHHHh
Confidence            8887765543        257999999998776665544344577764321100       00  0  0   12233455


Q ss_pred             chhhHHHHHHHHhH-hhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 008185          334 EESISYPLTWLVAS-VAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYA  412 (574)
Q Consensus       334 ~~~v~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~  412 (574)
                      +++.+...+...+. ....+.+...+|.|+.+.+|++..+.+.......++..++..+.+++.||+++|+.+.++.++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~  320 (432)
T PRK10406        241 NRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAA  320 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            66555433322221 22222233334555666789998888887766666667777788999999999987766544332


Q ss_pred             HHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHh-HHHHHHHHHH
Q 008185          413 SSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCL-SSIASGFLGV  491 (574)
Q Consensus       413 ~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~l-g~~lg~~i~g  491 (574)
                      +..+........      ..+....+....+..+.......+...+.+|.+|++.||+++|+.+.+.++ .+...|.+.+
T Consensus       321 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~  394 (432)
T PRK10406        321 LFTVPILSALQN------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL  394 (432)
T ss_pred             HHHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH
Confidence            222211111110      011111011111111111122223446688999999999999999887764 3445777777


Q ss_pred             HH
Q 008185          492 GL  493 (574)
Q Consensus       492 ~l  493 (574)
                      .+
T Consensus       395 ~l  396 (432)
T PRK10406        395 SL  396 (432)
T ss_pred             HH
Confidence            54

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=1.3e-23  Score=220.89  Aligned_cols=322  Identities=16%  Similarity=0.115  Sum_probs=204.0

Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHH
Q 008185          139 FHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMAC  217 (574)
Q Consensus       139 ~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  217 (574)
                      +.+++|+|+|+.+.|++.+.+.+++.+ +++.|+++||+     +||+.+. +.+...+...+......   ++..++++
T Consensus        15 p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-----grr~~~~-~~~~~~~~~~~~~~~~~---~~~~l~~~   85 (368)
T TIGR00903        15 SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-----FKRWFLF-GSLATFAAAAGRLLDPF---NYEWLLAC   85 (368)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHHH-HHHHHHHHHHHHHHHhc---cHHHHHHH
Confidence            356778999999999999999998866 78899999995     4555554 33333333222222212   26778999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh-hh
Q 008185          218 VLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS-FS  296 (574)
Q Consensus       218 ~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~-~~  296 (574)
                      |++.++|.+.. ......++|..++++|++++++...+..+|.++++++++++.+..|||+.|++.++++++..++. ++
T Consensus        86 R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~  164 (368)
T TIGR00903        86 QLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA  164 (368)
T ss_pred             HHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99998887753 34455678999999999999999999999999999999999999999999999888887776654 57


Q ss_pred             cccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHH
Q 008185          297 AREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMS  376 (574)
Q Consensus       297 lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~  376 (574)
                      +||++++..+.       .+.    ++..+++++++++|.++...+..++.+...+.+..-.|.|+.+ .|++.. .+..
T Consensus       165 lp~~p~~~~~~-------~~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~  231 (368)
T TIGR00903       165 LPALPFQAAEG-------FGF----KDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDA  231 (368)
T ss_pred             cCCCCCCCCCC-------cch----HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHH
Confidence            89876432110       000    1112345567888988877666555444444444445556644 677764 4444


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHH
Q 008185          377 -RVIGQSMLLSLTVFYDRYWKKVPLRKLVGA-VQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLP  454 (574)
Q Consensus       377 -~i~~~ig~lig~~l~~~l~~r~~~r~ll~~-~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p  454 (574)
                       .+....+.+....+.+++.|| ++|+.... ..++.++..+ .  +...       .+....+....+..+........
T Consensus       232 ~~l~~~~g~~g~~~~~d~~~r~-~~r~~~~~~~~~~~a~~~~-~--~~~~-------~~~~~~~~~~~l~~~~~~~~~~~  300 (368)
T TIGR00903       232 VALAILAGLIGVAVIPDRVARA-GLRSIYIRAAALLIAAFFL-A--LAFE-------LNRLALFAFIGIAGLLMLPAYAI  300 (368)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhh-hhHHHHHHHHHHHHHHHHH-H--HHHc-------cccHHHHHHHHHHHHhhhhhHHH
Confidence             333333444444555554333 43443332 2222222111 1  1100       01111111111111111112222


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008185          455 FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLA  494 (574)
Q Consensus       455 ~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~  494 (574)
                      ...+.+|.+|++.||++.|+.++..++++.++|.+.+.+.
T Consensus       301 ~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       301 IMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999999999999999999998887666

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.93  E-value=1.5e-23  Score=219.17  Aligned_cols=331  Identities=14%  Similarity=0.097  Sum_probs=214.4

Q ss_pred             hhHHHHHHhcCCChhHHHHHHHHhhhhhhhhhhheeeccccccC--CCccchhHhHHHHHHHHHHHHhhcccCccchHHH
Q 008185          136 ALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIG--GAHRIPYICIGVFLQILSWGPLALFPVAAKALPN  213 (574)
Q Consensus       136 ~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~~~--G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~  213 (574)
                      ..+ .+.+++|+|.+++++...+ .+++.++|++|+++||++.+  | |||++++.+.++.++++..+++..+.. ..+.
T Consensus        10 ~~~-~~~~~~g~s~~~~g~~~~~-~~~~~~~~~~g~~~Dr~~~~~~G-rr~~~l~~~~~~~~~~~~~l~~~~~~~-~l~~   85 (356)
T TIGR00901        10 TLP-YWLRSKNVSLKTIGFFSLV-GLPYSLKFLWSPLVDTVYLPFFG-RRRSWLVLTQVLLLSLLLILSFLVPST-DLPL   85 (356)
T ss_pred             HHH-HHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCCC-ccHHHHHHHHHHHHHHHHHHHcCCcch-hHHH
Confidence            344 3455689999999998655 66777799999999997443  4 777777777777777766666654322 2444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC--------hhHHHHHHHH
Q 008185          214 LMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP--------PTTMFLVFAV  285 (574)
Q Consensus       214 l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g--------wr~~f~i~ai  285 (574)
                      +....++.+++.+..+++.++++.|..++++|+.+.++...+..+|.++|+.+++.+.+..|        ||++|++.++
T Consensus        86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai  165 (356)
T TIGR00901        86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTAL  165 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHH
Confidence            55556666778888899999999999999999999999999999999999999999988888        9999999988


Q ss_pred             HHHHHHHHhh-hcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchh---hHHHHHHHHhHhhhcccccccceee
Q 008185          286 LLSLQLAISF-SAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEES---ISYPLTWLVASVAMVPVLSGSMFCY  361 (574)
Q Consensus       286 ~~~~~~~~~~-~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~l~~~l~~~~~~~~~~~~~~~  361 (574)
                      ..++..+..+ ..||+.......       ++...+.++   .++..+++|.   ++...+..++...........++.|
T Consensus       166 ~~l~~~~~~~~~~~e~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (356)
T TIGR00901       166 LILPGLLVTLFLAKEPQEDASVP-------KPLTQAVLK---PIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLF  235 (356)
T ss_pred             HHHHHHHHHHHhccCCCcccccc-------hhHHHHHHH---HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766555544 467753221100       000111122   2333445554   4443333332122222233344556


Q ss_pred             hccccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhh-hcccCcCcceEEee
Q 008185          362 QTQCLNINPSVIGMSRVI-GQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQI-NLQFGVPNEVFVLC  439 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~-~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~-~~~~~~~~~~~~l~  439 (574)
                      ..+ +|+++.+.|..... +.++.+++..+.+++.||+++|+.+..+.++.++...+........ +...+.++.+....
T Consensus       236 l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (356)
T TIGR00901       236 LLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFL  314 (356)
T ss_pred             HHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHH
Confidence            665 89999999987654 4467788888889999999988887777666554433221111100 00000011111111


Q ss_pred             hhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 008185          440 FAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCL  481 (574)
Q Consensus       440 ~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~l  481 (574)
                      ...+..+...+...+..++++|.+|++.+|+++|++++..++
T Consensus       315 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  356 (356)
T TIGR00901       315 TITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSAL  356 (356)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhC
Confidence            111222222344555678899999999999999999887653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.93  E-value=1.1e-23  Score=224.00  Aligned_cols=344  Identities=16%  Similarity=0.148  Sum_probs=215.7

Q ss_pred             HHHHHHhhhcc-chhhhhHHHHHHhcCCChhH-----HHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHH
Q 008185          121 GLGYWVQGFRC-FPWLALNFHMAHNLSLHPST-----LQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFL  193 (574)
Q Consensus       121 ~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~-----~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~  193 (574)
                      .++.++.++.. +..+.++.+.+ ++|++..+     .+++.+++.++..+ +|++|+++||+     +||+.+..+.+.
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~   93 (408)
T PRK09874         20 WLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-----GRKIMLLRSALG   93 (408)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----CcHHHHHHHHHH
Confidence            33445555554 44445555554 48888654     47788888887655 89999999985     466666667766


Q ss_pred             HHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008185          194 QILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK  273 (574)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~  273 (574)
                      ..++..++....+    ++.+++.|++.+++.+.. ....+.+.|..++++|+.++++...+..+|.++||.+++.+.+.
T Consensus        94 ~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  168 (408)
T PRK09874         94 MGIVMVLMGLAQN----IWQFLILRALLGLLGGFV-PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS  168 (408)
T ss_pred             HHHHHHHHHHHhh----HHHHHHHHHHHHHhhhhH-HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666665554432    566778888887765543 44567788888889999999999999999999999999999888


Q ss_pred             CChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhc-
Q 008185          274 TPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMV-  351 (574)
Q Consensus       274 ~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~-  351 (574)
                      .+||+.|++.+++.++..+.. +++||+..+..+.+         ..    ..++..+.+++|+++.......+.+... 
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (408)
T PRK09874        169 YGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE---------ML----HMREVVTSLKNPKLVLSLFVTTLIIQVAT  235 (408)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh---------hh----HHHHHHHhCcCCchHHHHHHHHHHHHHHH
Confidence            999999999988776665554 45777543221100         00    1122234456666654332222211111 


Q ss_pred             ccccccceeehccccCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcc
Q 008185          352 PVLSGSMFCYQTQCLNINP---SVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQ  428 (574)
Q Consensus       352 ~~~~~~~~~~~~~~~g~s~---~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~  428 (574)
                      ......++.|..+..+...   ...|+......++.+++....+++.||+++|+.+..+.++..+..+. ....      
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~------  308 (408)
T PRK09874        236 GSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIP-MSFV------  308 (408)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-HHHh------
Confidence            1111222333333222211   12344455556777788888899999999998887765544332221 1111      


Q ss_pred             cCcCcceEEeehhHHHHHHHHhhHHH-HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          429 FGVPNEVFVLCFAGLAETLAQFKLLP-FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       429 ~~~~~~~~~l~~~~l~~~~~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                         ++.+.... ..+..+++.....| ..+++.+..|++.+|+.+|++++..++|..+||.++|.+.+..|+
T Consensus       309 ---~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~  376 (408)
T PRK09874        309 ---QTPLQLGI-LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGF  376 (408)
T ss_pred             ---ccHHHHHH-HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcch
Confidence               11111111 11122222222333 345667888999999999999999999999999999999887664

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.93  E-value=8.3e-24  Score=230.17  Aligned_cols=363  Identities=13%  Similarity=0.060  Sum_probs=250.0

Q ss_pred             HHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHH
Q 008185          117 LVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQ  194 (574)
Q Consensus       117 ~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~  194 (574)
                      +..+.++.+...++. +....++ .+.+++|.+..+.+++.+.+.++..+ .|++|+++||+     +||+.+.++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~   77 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-----GTRRLFLISTFAF   77 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-----CcHHHHHHHHHHH
Confidence            444666677777766 5555555 55667999999999999999998766 78899999985     5667777777777


Q ss_pred             HHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 008185          195 ILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKT  274 (574)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~  274 (574)
                      .++..+++..++    +..+++.|++.+++.+...+...+++.|..++++|+.+++++.....+|..+||.++|++.+..
T Consensus        78 ~~~~~~~~~~~~----~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  153 (485)
T TIGR00711        78 TLGSLLCGVAPN----LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY  153 (485)
T ss_pred             HHHHHHHhCcCC----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc
Confidence            777776665542    5677889999999988888888899999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHh-hhcccccccccccchh------------------cchhhhhhhh--H------------
Q 008185          275 PPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQ------------------NVASKSIAQS--I------------  321 (574)
Q Consensus       275 gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~------------------~~~~~~~~~~--~------------  321 (574)
                      ||||.|++.+++.++..++. +++||+++...++...                  +.++..+...  .            
T Consensus       154 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (485)
T TIGR00711       154 HWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAII  233 (485)
T ss_pred             CceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHH
Confidence            99999999888776666554 4567653321110000                  0000000000  0            


Q ss_pred             ---HHHHH-----HHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008185          322 ---KKQFS-----DLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDR  393 (574)
Q Consensus       322 ---~~~~~-----~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~  393 (574)
                         .+..+     ...+.+++|.++...+..++.+.........++.|+++.+|+++.+.|+......++.+++..+.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~  313 (485)
T TIGR00711       234 AFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGR  313 (485)
T ss_pred             HHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               00000     0123567776665554444423322333334566778889999999999999999999999999999


Q ss_pred             HHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHH-HhhHHHHHHHHHhhcCCChhHHHH
Q 008185          394 YWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLA-QFKLLPFSMLLARLCPQGCEGSLT  472 (574)
Q Consensus       394 l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~  472 (574)
                      +.+|+++|+++..+.++.++...... ...  .    ............+..+++ +....|......+..|++.+|++.
T Consensus       314 l~~r~~~~~~~~~g~~~~~~~~~~~~-~~~--~----~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~  386 (485)
T TIGR00711       314 MGDKIDPRKLVTIGLILYAVGFYWRA-FTF--T----PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGS  386 (485)
T ss_pred             HHhhcCcHHHHHHHHHHHHHHHHHHh-ccC--C----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHH
Confidence            99999999887777655544433211 000  0    001111111112222222 233445556667888999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHh
Q 008185          473 SFSASALCLSSIASGFLGVGLASL  496 (574)
Q Consensus       473 gl~~~~~~lg~~lg~~i~g~l~~~  496 (574)
                      |+.+..+++|+++|+.+.+.+.+.
T Consensus       387 ~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       387 SLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888774

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.93  E-value=1.4e-23  Score=222.82  Aligned_cols=375  Identities=13%  Similarity=0.061  Sum_probs=241.1

Q ss_pred             chhHHHHHHHHHHHhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHH
Q 008185          113 NKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGV  191 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~  191 (574)
                      +|.+...++.+.+...+.....+..+ .+++++|+|..+.++..+.+.+++.+ .|+.|+++||+     +||+.+..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-----G~r~~l~~~~   81 (393)
T PRK09705          8 NFMLLVLVLIGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-----SERRSVAISL   81 (393)
T ss_pred             HHHHHHHHHHHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----CchHHHHHHH
Confidence            55555545555544433333334444 56788999999999999999998876 88999999984     5777777888


Q ss_pred             HHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhh
Q 008185          192 FLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFL  271 (574)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~  271 (574)
                      .+..++..+.+++++    +..+++.|+++++|.+...+...+++.|..+ ++|+.+++++..+..+|+.+|+.+++++.
T Consensus        82 ~l~~~~~~~~~~a~~----~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~  156 (393)
T PRK09705         82 LLIAVGALMRELYPQ----SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV  156 (393)
T ss_pred             HHHHHHHHHHHHCcc----hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887754    5667888999999999887777777888775 78999999999988999999999999988


Q ss_pred             ccC-ChhHHHHHHHHHHHHHHHHhhhc-ccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhh
Q 008185          272 LKT-PPTTMFLVFAVLLSLQLAISFSA-REESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVA  349 (574)
Q Consensus       272 ~~~-gwr~~f~i~ai~~~~~~~~~~~l-pEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~  349 (574)
                      ++. +||+.+.+.++..++..+..+.. ++++....+   +    +   ..       .++.++++..+...+..++...
T Consensus       157 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~---~~-------~~~~l~~~~~~~l~~~~~~~~~  219 (393)
T PRK09705        157 QHSETWYQTLAWWALPAVVALFAWWWQSAREVASSHK---T----T---TT-------PVRVVFTPRAWTLGVYFGLING  219 (393)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC---C----C---cC-------CcccccCHhHHHHHHHHHHHHH
Confidence            875 89999877665544333322222 222111100   0    0   00       0122345555544333322111


Q ss_pred             hcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 008185          350 MVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQF  429 (574)
Q Consensus       350 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~  429 (574)
                      .........+.+..+ +|+++.+.|.......++.+++..+.+++.||.++|+....+..+..+..+.. .....     
T Consensus       220 ~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~-~~~~~-----  292 (393)
T PRK09705        220 GYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF-IWLPL-----  292 (393)
T ss_pred             HHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH-HHccc-----
Confidence            111222233445554 79999999999888999999999999999999999888776654443332211 11110     


Q ss_pred             CcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhc-CCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCCh
Q 008185          430 GVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLC-PQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSL  507 (574)
Q Consensus       430 ~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~-p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l  507 (574)
                         +... +.  .+..+++.....|. .....+.. |++.+|+.+|+.+...+++..++|.+.|++.+..|.    +.  
T Consensus       293 ---~~~~-~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~----~~--  360 (393)
T PRK09705        293 ---QLPV-LW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN----YL--  360 (393)
T ss_pred             ---hHHH-HH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----ch--
Confidence               0000 00  11112222222232 23444555 467889999999999999999999999999998762    22  


Q ss_pred             hHHHHHHHHHHHHH-HHHHHhcCCCHHHH
Q 008185          508 PVGIVIQFLAALLP-LIWIHNVPMSETII  535 (574)
Q Consensus       508 ~~~~li~~~~~ll~-l~~~~~vp~~~~~~  535 (574)
                       ..+.+.++..++. .+.+.+.||++++.
T Consensus       361 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        361 -MDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhccccccch
Confidence             2223332222222 22345677776543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.93  E-value=7.7e-24  Score=221.30  Aligned_cols=355  Identities=13%  Similarity=0.086  Sum_probs=228.7

Q ss_pred             hHHHHHHHHHHHhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHH
Q 008185          115 QMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFL  193 (574)
Q Consensus       115 ~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~  193 (574)
                      ..+....+..+..+... ...+..+.+++++|++..+.+++.+++.+++.+ +|++|+++||+     +||+.+.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-----G~r~~~~~~~~~   77 (377)
T TIGR00890         4 YVLVGTVIMCFTSGYVY-TWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-----GPRAVAMLGGIL   77 (377)
T ss_pred             EEeHHHHHHHHHhhHHh-hhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-----CccchhHHhHHH
Confidence            33443344444444433 223334467888999999999999999998876 88999999985     455666667777


Q ss_pred             HHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008185          194 QILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK  273 (574)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~  273 (574)
                      ..+.....+..++    ++.++++|++.+++.+.........+.+..+ ++|+.++++...+..+|.++++.+.+.+.+.
T Consensus        78 ~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (377)
T TIGR00890        78 YGLGFTFYAIADS----LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL  152 (377)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc
Confidence            7777766666542    5667888988888877655444455566655 6799999999888889988777677777777


Q ss_pred             CChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcc
Q 008185          274 TPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVP  352 (574)
Q Consensus       274 ~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~  352 (574)
                      .|||+.|++.+++.++..+.. +++||++.+..+++++    .   +..+   +..++.+++|.++...+..++......
T Consensus       153 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (377)
T TIGR00890       153 EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIE----V---SVKD---YTVWEMLRTPQFWVLYLSFFLNAVSGL  222 (377)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcc----c---chhh---hhHHHHHcCccHHHHHHHHHHHhHHHH
Confidence            899999999988887776664 4565543221111000    0   0001   122345677776654443332111111


Q ss_pred             cccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcC
Q 008185          353 VLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVP  432 (574)
Q Consensus       353 ~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~  432 (574)
                      .....++.| .+.+|+++.+.+.......++.+++..+.+++.||+++|+.+..+.++..+..+.. .....       .
T Consensus       223 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~~-------~  293 (377)
T TIGR00890       223 LLIGLYKPY-GQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAM-LFIPM-------L  293 (377)
T ss_pred             HHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-HHccc-------c
Confidence            111112223 34578888888888888888999999999999999999988877766555443321 11110       0


Q ss_pred             cceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          433 NEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       433 ~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      .....+....+.....+........+.+|..|++++|+++|+.+...++|..++|.+.|.+.+..|+
T Consensus       294 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  360 (377)
T TIGR00890       294 NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF  360 (377)
T ss_pred             hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence            0110001111111111122222345678999999999999999999999999999999999887764

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.93  E-value=3e-23  Score=220.32  Aligned_cols=349  Identities=13%  Similarity=0.049  Sum_probs=228.4

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +.++.++..+.. +.....+.. .++++.++.+.+++.+.+.+++.+ +|++|+++||+     +||+.++.+.++..++
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-----grr~vl~~~~~~~~~~   81 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-----PKGRVMFIANGIKLLG   81 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-----CCchhhHHHHHHHHHH
Confidence            344455555533 333444434 456899999999999999999866 99999999995     5666676677666555


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPT  277 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr  277 (574)
                      ..++++..+       .++.|++++++.+...+...+++.|+.++++|++++++.+....+|.++||.++|++.+. .|+
T Consensus        82 ~~~~~~~~~-------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~  153 (393)
T PRK11195         82 CLLMLFGIH-------PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAE  153 (393)
T ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            554433321       267789999999999999999999999999999999999999999999999999999875 488


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhccccccc
Q 008185          278 TMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGS  357 (574)
Q Consensus       278 ~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~  357 (574)
                      ..+++.+...++..+..+.+||++.+..+.+.   +...   ..++..+..+.++++|.+........+.+.........
T Consensus       154 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (393)
T PRK11195        154 AALAVCALIYLLAALFNLFIPRLGARRPGQSW---NPIA---LLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFL  227 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcccccccCC---CHHH---HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence            88877765554443434568876532211100   0000   11111122334566676554333222222222222223


Q ss_pred             ceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEE
Q 008185          358 MFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFV  437 (574)
Q Consensus       358 ~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~  437 (574)
                      ++.|.++.+|.++.+.|+......+|.+++..+.+++.+|++.++++..+.++ ++..+. +...         ++.+..
T Consensus       228 ~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~-~~~~---------~~~~~~  296 (393)
T PRK11195        228 VLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLL-MALQ---------HSLLPA  296 (393)
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHH-HHHH---------hHHHHH
Confidence            34466778999999999999999999999999999999888887766655332 222111 1111         111111


Q ss_pred             eehhHHHHHHHHhhHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcc
Q 008185          438 LCFAGLAETLAQFKLLPFSMLLARLCPQGC-EGSLTSFSASALCLSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       438 l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~-~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~  500 (574)
                      .....+.....+....|..+.+++..|++. +|++.|+.+..++++..++..+.+.+ +.+|..
T Consensus       297 ~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~  359 (393)
T PRK11195        297 YPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVP  359 (393)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCC
Confidence            111112222223444566777778766655 79999999999999999999888855 556653

>TIGR00897 2A0118 polyol permease family

Probab=99.93  E-value=8.9e-23  Score=217.28  Aligned_cols=341  Identities=11%  Similarity=0.035  Sum_probs=213.3

Q ss_pred             hhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhh---cccCcc
Q 008185          133 PWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLA---LFPVAA  208 (574)
Q Consensus       133 ~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~---~~~~~~  208 (574)
                      ....++.++ +++|.++.+.++..+.+.+++.+ .|++|+++||+     +||+.+..+..+..++..+..   ....+ 
T Consensus        32 ~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-----g~k~~l~~~~~~~~~~~~~~~~~~~~~~~-  104 (402)
T TIGR00897        32 EQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-----GPLKTMMIGLLLWCVGHAAFIVFGLGHAN-  104 (402)
T ss_pred             HHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHHHHHHHHHHhccCcc-
Confidence            333444565 45899999999999999998766 89999999985     566666666666555544332   21122 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHH-HHHHHHHHHhhccCChhHHHHHHHHHH
Q 008185          209 KALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGG-ILGNLFGGYFLLKTPPTTMFLVFAVLL  287 (574)
Q Consensus       209 ~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~-~igp~igg~l~~~~gwr~~f~i~ai~~  287 (574)
                        ...+++.|++.++|.+.......+.+.|..++++|++++|+.+.+..+|. ++||++++++.+..||+..+|......
T Consensus       105 --~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  182 (402)
T TIGR00897       105 --YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFV  182 (402)
T ss_pred             --HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence              45567789988887776655556777888888999999999999988886 689999999988889877777655443


Q ss_pred             HHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehcccc
Q 008185          288 SLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCL  366 (574)
Q Consensus       288 ~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  366 (574)
                      .+..++. ++.++.+.+..+++      +.   +.++..+..+..+++|.++...+..++............|.|. +.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~  252 (402)
T TIGR00897       183 LTGGVIALFSNKDIFTPQHMQT------RE---KFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFV-AEL  252 (402)
T ss_pred             HHHHHHHHhccCCCCCcccccC------Cc---chhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHc
Confidence            3333333 34555432211100      00   0111122334567788776654433332222222223345455 458


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHH
Q 008185          367 NINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVG-AVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAE  445 (574)
Q Consensus       367 g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~-~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~  445 (574)
                      |+++.+.+.......++.+++..+.+++.||+++|+.+. .+.+...+.... +......    .....+.......+. 
T Consensus       253 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~-l~~~~~~----~~~~~~~~~~~~~~~-  326 (402)
T TIGR00897       253 GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLA-LYYIPQH----FGHSFAVALIIAIAL-  326 (402)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH-HHHHHHc----cCCcHHHHHHHHHHH-
Confidence            999988888877788899999999999999999887653 222222222111 1111000    001111111111111 


Q ss_pred             HHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          446 TLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       446 ~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      +.+.....|......+.. ++.+|+++|+.+...++|..++|.++|.+.+..|+
T Consensus       327 G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~  379 (402)
T TIGR00897       327 GIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGA  379 (402)
T ss_pred             HHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            122222344445556654 56899999999999999999999999999997663

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.92  E-value=7.5e-23  Score=222.73  Aligned_cols=356  Identities=16%  Similarity=0.148  Sum_probs=243.1

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +....+...++. +...+.+.++.+ +.-|+...+++.....+|.. ++|+.|.++||+     .||++++.+.++.++.
T Consensus        15 lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-----drrrili~~~~~~~~~   88 (524)
T PF05977_consen   15 LWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRF-----DRRRILILSQLLRALV   88 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cchHHHHHHHHHHHHH
Confidence            334444555554 555566655554 67799999999999999985 599999999995     6777777777665544


Q ss_pred             HHHhhcc-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 008185          198 WGPLALF-PVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPP  276 (574)
Q Consensus       198 ~~~~~~~-~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gw  276 (574)
                      ..+++.. ..+..+.+.++++-++.+++.++..+...+++.|+.++++...+.++.....++.-++||.+||.++...|-
T Consensus        89 ~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~  168 (524)
T PF05977_consen   89 ALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGA  168 (524)
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            3333322 122223566777788889999999999999999999999999999999999999999999999999998999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccc
Q 008185          277 TTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSG  356 (574)
Q Consensus       277 r~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~  356 (574)
                      .++|.+.++..++..+..+.+|.+..+....      +++....+++.++-   ..++|.+...++..++..........
T Consensus       169 ~~~f~inalsfl~~i~~l~~~~~~~~~~~~~------~e~~~~~l~~G~ry---v~~~~~l~~~l~~~~~~~l~~~a~~a  239 (524)
T PF05977_consen  169 AAAFLINALSFLISILALLRWKPPPPPSSLP------RERFFSALREGLRY---VRSSPPLRSVLLRSFLFNLFASAVWA  239 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccccccccccc------hhhhhhhHHHHHHH---HhcchHHHHHHHHHHHHHHhhhHHHH
Confidence            9999999877666544444444322111100      11222233333322   23455544443322221111112223


Q ss_pred             cceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceE
Q 008185          357 SMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVF  436 (574)
Q Consensus       357 ~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~  436 (574)
                      .+|.+..+.+|.++..+|++....++|+++|+.+.+++.+|.+.++++..+.++.+++.+. +.+.         ++.+.
T Consensus       240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~-lal~---------~~~~~  309 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLL-LALS---------PSFWL  309 (524)
T ss_pred             hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHH-Hhcc---------hHHHH
Confidence            4566777889999999999999999999999999999999988888877776665554332 1111         11221


Q ss_pred             EeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcc
Q 008185          437 VLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       437 ~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~  500 (574)
                      ......+.+........+..+..++..|++.+|+++|++.++...+.++|.++.|.+.+.+|..
T Consensus       310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~  373 (524)
T PF05977_consen  310 ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVR  373 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            1111122222222333445677899999999999999999999999999999999999998853

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.92  E-value=1.5e-23  Score=225.81  Aligned_cols=370  Identities=11%  Similarity=0.001  Sum_probs=226.7

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|..++.+.+.+....... ......+ ++++ +|+++.+.++..+++.++..+ .++.|+++||+     +||+.+..+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~~~~~~~~   97 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-----NPRVFLPAG   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-----CCceehHHH
Confidence            4555554555555554432 2222333 5566 599999999999999998766 78899999995     455566667


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++..+++..+....++..+.+.|++.+++.+.........+.|..++++|+.++++.+.+..+|..++|.+.+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~  177 (438)
T TIGR00712        98 LILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLG  177 (438)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHH
Confidence            66666666655544211112445567788877777666566677888999999999999999999999999998877754


Q ss_pred             hc-cCChhHHHHHHHHHHHHHHHH-hhhcccccccccccc--hhcch-----hhhhh--hhHHHHHHHHHHHHcchhhHH
Q 008185          271 LL-KTPPTTMFLVFAVLLSLQLAI-SFSAREESLGLAQVS--YQNVA-----SKSIA--QSIKKQFSDLIATIGEESISY  339 (574)
Q Consensus       271 ~~-~~gwr~~f~i~ai~~~~~~~~-~~~lpEt~~~~~~~~--~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~v~~  339 (574)
                      .. ..+||+.|++.+++.++..++ .+++||++.....++  +.+.+     .++..  .+.++...  ...++++.++.
T Consensus       178 ~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  255 (438)
T TIGR00712       178 MAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFM--QYVLPNKLLWY  255 (438)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHH--HHHccCchHHH
Confidence            44 569999999998888776655 456787654321000  00000     00000  01111111  12467787776


Q ss_pred             HHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHH
Q 008185          340 PLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDL  419 (574)
Q Consensus       340 ~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l  419 (574)
                      ..+..++.+...+......|.|.++.+|+++.+.++......++.+++..+.+++.||+++++....+..+........+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  335 (438)
T TIGR00712       256 IAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVI  335 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHH
Confidence            65554443333233334456677777899999999988888888888888888888887543222222211111111111


Q ss_pred             HhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH---HHHHHhhcCCChhHHHHHHHHHHHHhHH-HHHHHHHHHHHH
Q 008185          420 ILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF---SMLLARLCPQGCEGSLTSFSASALCLSS-IASGFLGVGLAS  495 (574)
Q Consensus       420 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~---~~l~~~~~p~~~~gt~~gl~~~~~~lg~-~lg~~i~g~l~~  495 (574)
                      .+....     ..+.+. .....+  ..+.....|.   .....|.+|++.+|+++|+.++..++|+ .++|.+.|.+.+
T Consensus       336 ~~~~~~-----~~~~~~-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~  407 (438)
T TIGR00712       336 VYWMNP-----AGNPLV-DMICMI--VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  407 (438)
T ss_pred             HHHhcC-----CCchHH-HHHHHH--HHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH
Confidence            111000     001110 000011  1111111221   2346789999999999999999988874 689999999999


Q ss_pred             hhCc
Q 008185          496 LTGI  499 (574)
Q Consensus       496 ~~g~  499 (574)
                      ..|+
T Consensus       408 ~~g~  411 (438)
T TIGR00712       408 FFGW  411 (438)
T ss_pred             hccc
Confidence            8764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.92  E-value=1.1e-23  Score=229.09  Aligned_cols=247  Identities=10%  Similarity=-0.085  Sum_probs=155.9

Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHH
Q 008185          139 FHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMAC  217 (574)
Q Consensus       139 ~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  217 (574)
                      +.+.+++|++..+.+++.+.+.+++.+ .++.|+++||+     +||+.+..+.++..++..+.++..+    ...++++
T Consensus        60 ~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----G~r~~~~~~~~~~~~~~~~~~~~~s----~~~l~~~  130 (476)
T PLN00028         60 PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-----GPRYGSAFLLMLTAPAVFCMSLVSS----ATGFIAV  130 (476)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHhcC----HHHHHHH
Confidence            366788999999999998888888776 68899999995     4555666666666666665655532    4566778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhh----c-----cCChhHHHHHHHHHHH
Q 008185          218 VLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFL----L-----KTPPTTMFLVFAVLLS  288 (574)
Q Consensus       218 ~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~----~-----~~gwr~~f~i~ai~~~  288 (574)
                      |++.+++.+... .....+.|..++++||.++++.+....+|..+++.+.+.+.    +     ..|||++|++.+++.+
T Consensus       131 r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l  209 (476)
T PLN00028        131 RFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHI  209 (476)
T ss_pred             HHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH
Confidence            888877766433 34456889999999999999887666666666655554432    2     2589999999998887


Q ss_pred             HHHHHhhhccc-ccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccC
Q 008185          289 LQLAISFSARE-ESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLN  367 (574)
Q Consensus       289 ~~~~~~~~lpE-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g  367 (574)
                      +..++.+++++ ++....+..+++.  +.....   ..+.+++.+++++++...+..++.+..........+.|+.+.+|
T Consensus       210 ~~~l~~~~~~~~~p~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g  284 (476)
T PLN00028        210 IMGILVLTLGQDLPDGNYRELKKSG--TMPKDS---FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFG  284 (476)
T ss_pred             HHHHHHHHHcCcCCCCchhhHHhcC--cccccc---HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence            77666544443 2221100000000  000000   11234445677777655443333222222222234455667789


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 008185          368 INPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPL  400 (574)
Q Consensus       368 ~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~  400 (574)
                      +++...+.......++.+++..+.+++.||+++
T Consensus       285 ~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~  317 (476)
T PLN00028        285 LSLETAGAIAASFGLMNLFARPAGGYLSDVAAR  317 (476)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            999888887766666666666666666665543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.92  E-value=9.5e-23  Score=216.42  Aligned_cols=363  Identities=13%  Similarity=0.112  Sum_probs=217.5

Q ss_pred             HHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhh-hhhhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHh
Q 008185          124 YWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGN-LPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPL  201 (574)
Q Consensus       124 ~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~-l~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~  201 (574)
                      .|..++.. +..+.++.++++++|.+++++|++.+... .++.++|++|.++||+   | +||.+++.+.+...+...+.
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~---g-~r~~~~~~~~~~~~~~~~~~   99 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKR---G-DRKSLIVFCCLLGVLACTLF   99 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-chhHHHHHHHHHHHHHHHHH
Confidence            45555554 55566777889999999999999877654 4677777765559985   3 55655555555444444444


Q ss_pred             hcccCccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccCc--cchHHHHHHHHHHHHHHHHHHHHHhhccCChhH
Q 008185          202 ALFPVAAKALPNLMAC-VLLSNLGASITEVAKDALVAEYGQKNGI--VGLQSYAFMAAASGGILGNLFGGYFLLKTPPTT  278 (574)
Q Consensus       202 ~~~~~~~~~~~~l~~~-~~l~~~g~~~~~~~~~a~i~d~~~~~~r--g~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~  278 (574)
                      ++..+    ++.+++. +++++.+. ...+...++..|..++++|  +...++.+++.++|.++||.+++++.+..|||+
T Consensus       100 ~~~~~----~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~  174 (393)
T PRK15011        100 AWNRN----YFVLLFVGVFLSSFGS-TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTV  174 (393)
T ss_pred             HHhhH----HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHH
Confidence            44322    4444444 44444443 4455566777777655544  233467777888999999999999998899999


Q ss_pred             HHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhccccccc
Q 008185          279 MFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGS  357 (574)
Q Consensus       279 ~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~  357 (574)
                      .|++.++..++..+.. +++||.+....+. +     ++ .+..++         +.+..+......++.+.....+...
T Consensus       175 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  238 (393)
T PRK15011        175 MYLSAAVAFIVCGVMVWLFLPSMRKELPLA-T-----GT-LEAPRR---------NRRDTLLLFVICTLMWGTNSLYIIN  238 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCccCCCCccc-c-----cc-cccccc---------ccccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988777666554 4678764321110 0     00 000000         0111111111111112211222223


Q ss_pred             ceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEE
Q 008185          358 MFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFV  437 (574)
Q Consensus       358 ~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~  437 (574)
                      .+.|.++.+|+++.+.|+......++.+++..+.+++.||+++|+.+..+.+...+. +......         .+.+..
T Consensus       239 ~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~  308 (393)
T PRK15011        239 MPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF-YAGMLMA---------HSPAIL  308 (393)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHHHHHH---------hhHHHH
Confidence            455666778999988888776666777888889999999999998776554433322 1111111         011111


Q ss_pred             eehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHH
Q 008185          438 LCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLA  517 (574)
Q Consensus       438 l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~  517 (574)
                      +....+.....+..........+|..|+ .+|++.++++...++|..+++.++|.+.+.+|+.        ..+.++.+.
T Consensus       309 l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~--------~~~~~~~~~  379 (393)
T PRK15011        309 LGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYH--------AVFWFALVM  379 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHH
Confidence            1111111111111112223556788875 5999999999999999999999999999976642        334445555


Q ss_pred             HHHHHHHHHhcCC
Q 008185          518 ALLPLIWIHNVPM  530 (574)
Q Consensus       518 ~ll~l~~~~~vp~  530 (574)
                      .+++++.++++||
T Consensus       380 ~~~~~~~~~~~~~  392 (393)
T PRK15011        380 IIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHhhcC
Confidence            5566666666665

>PRK09952 shikimate transporter; Provisional

Probab=99.92  E-value=1.2e-22  Score=218.71  Aligned_cols=392  Identities=11%  Similarity=0.062  Sum_probs=228.0

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhc--CCChhHHHHHHHH--hhhh---hhh-hhhheeeccccccCCCcc
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNL--SLHPSTLQLVQNS--GNLP---MVA-KPLYGILSDALYIGGAHR  183 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~--~~s~~~~~l~~s~--~~l~---~~~-~pl~G~lsD~~~~~G~rR  183 (574)
                      +|.......++.+..+++. +.....+..+.+++  +.++. .++..+.  +.++   ..+ +++.|+++||+     +|
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-----Gr   93 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-----GR   93 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-----cc
Confidence            4445555666777777765 33333333556555  67776 4554322  2223   333 45679999985     56


Q ss_pred             chhHhHHHHHHHHHHHHhhcccCccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHH
Q 008185          184 IPYICIGVFLQILSWGPLALFPVAAK----ALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASG  259 (574)
Q Consensus       184 k~~l~i~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G  259 (574)
                      |+.+.++.++..++..+.+++++...    ....++++|++++++.+...+....++.|..|+++|+...+....+..+|
T Consensus        94 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G  173 (438)
T PRK09952         94 KRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            67777788888888887777754210    01146788999999988877777788999999999999999888888899


Q ss_pred             HHHHHHHHHHhh--------ccCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHH
Q 008185          260 GILGNLFGGYFL--------LKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIAT  331 (574)
Q Consensus       260 ~~igp~igg~l~--------~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (574)
                      .++++.+++.+.        +.+|||++|++.++..++...+...+||+++......+.+    +.++    ........
T Consensus       174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~----~~~~----~~~~~~~l  245 (438)
T PRK09952        174 LLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQA----AAKK----RIPVIEAL  245 (438)
T ss_pred             HHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcc----cccc----cCCHHHHH
Confidence            998887776654        2579999999987765443332345778754321110000    0000    00001112


Q ss_pred             HcchhhHHHHHHH-HhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 008185          332 IGEESISYPLTWL-VASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQIL  410 (574)
Q Consensus       332 ~~~~~v~~~~l~~-~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll  410 (574)
                      +++|+.+...... +......+......+.|..+.+|++............+..+++..+.+++.||+++|+.+..+.++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~  325 (438)
T PRK09952        246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALI  325 (438)
T ss_pred             HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            3455544433211 111111222222334466677888877655554455566677778889999999999887766554


Q ss_pred             HHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHH-HhHHHHHHH
Q 008185          411 YASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASAL-CLSSIASGF  488 (574)
Q Consensus       411 ~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~-~lg~~lg~~  488 (574)
                      ..++.+.. .....      ..+....+....+...++ +....+...+..|.+|.+.|+++.|+.+.+. .+|+.++|.
T Consensus       326 ~~~~~~~~-~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~  398 (438)
T PRK09952        326 GTLSAFPF-FMALE------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPF  398 (438)
T ss_pred             HHHHHHHH-HHHHH------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHH
Confidence            43322211 11100      001111111111111112 2222334567889999999999999976665 488899999


Q ss_pred             HHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Q 008185          489 LGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMS  531 (574)
Q Consensus       489 i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp~~  531 (574)
                      +.+.+.+..+.   ++.   ..+.+.++..+++++....++++
T Consensus       399 i~g~l~~~~~~---~~~---~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        399 IAAALVTYFGG---SWH---SVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHhcCC---Cch---HHHHHHHHHHHHHHHHHHHcccc
Confidence            99998875431   122   22333444444444444556653

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.92  E-value=3.2e-24  Score=224.39  Aligned_cols=345  Identities=15%  Similarity=0.015  Sum_probs=225.7

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACV  218 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (574)
                      ++.+++|.+..+.+++.+++.++..+ .++.|+++||+     +||+.+.++.++..++..+.+...+    ++.+++.|
T Consensus        20 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~   90 (379)
T TIGR00881        20 YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-----NPRVFLPIGLILCAIVNLFFGFSTS----LWVMAALW   90 (379)
T ss_pred             HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-----CCeehhHHHHHHHHHHHHHHHHhhh----HHHHHHHH
Confidence            56778999999999999999998766 78899999985     5667777787777777776666642    56678889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHH-HHHHHhhccCChhHHHHHHHHHHHHHHHHh-hh
Q 008185          219 LLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGN-LFGGYFLLKTPPTTMFLVFAVLLSLQLAIS-FS  296 (574)
Q Consensus       219 ~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp-~igg~l~~~~gwr~~f~i~ai~~~~~~~~~-~~  296 (574)
                      ++.+++.+...+...+++.|..++++|+.++++...+..+|.+++| ++++.+.+..+||+.|++.+++.++..++. ++
T Consensus        91 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (379)
T TIGR00881        91 ALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLL  170 (379)
T ss_pred             HHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhee
Confidence            9998888887777888999999999999999999999999999999 577777778899999999888777665554 45


Q ss_pred             cccccccccccchhc----c-h--hhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCC
Q 008185          297 AREESLGLAQVSYQN----V-A--SKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNIN  369 (574)
Q Consensus       297 lpEt~~~~~~~~~~~----~-~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s  369 (574)
                      .||++........++    . +  ++...+..+......+..+++|.++...+..++.+..........+.|..+.+|++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  250 (379)
T TIGR00881       171 LRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFS  250 (379)
T ss_pred             eCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            676543221100000    0 0  00000000001112334567777766555444323222223333455667788999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHH-HHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHH
Q 008185          370 PSVIGMSRVIGQSMLLSLTVFYDRYWKKVPL-RKLVGA-VQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETL  447 (574)
Q Consensus       370 ~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~-r~ll~~-~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~  447 (574)
                      +.+.++......++.+++..+.+++.+|... |+.... .........+......       ...+.+.......+....
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~  323 (379)
T TIGR00881       251 KEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN-------PAANPLMDLICLFALGFL  323 (379)
T ss_pred             HHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC-------cchhHHHHHHHHHHHHHH
Confidence            9999998888888888888888888887532 322221 1111111111110000       001111111111111111


Q ss_pred             HHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcc
Q 008185          448 AQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       448 ~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~  500 (574)
                      ..........+.+|..|++.||+++|+.+...++|..++|.+.|.+.+..|+.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  376 (379)
T TIGR00881       324 VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA  376 (379)
T ss_pred             HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence            11111222356789999999999999999999999999999999999988754

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.92  E-value=6.6e-23  Score=216.78  Aligned_cols=345  Identities=12%  Similarity=0.021  Sum_probs=217.5

Q ss_pred             HHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHHH
Q 008185          121 GLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILSW  198 (574)
Q Consensus       121 ~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~  198 (574)
                      .+.++...+.. +..+.++.+++ ++|+|..++|++.+++.+... .+|++|+++||.   | ||+....+......+..
T Consensus        10 ~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~---~-~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902        10 ALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA---N-HIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C-cHHHHHHHHHHHHHHHH
Confidence            34444444433 44444555654 589999999999999888654 489999999985   2 32211111111111111


Q ss_pred             HHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhH
Q 008185          199 GPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTT  278 (574)
Q Consensus       199 ~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~  278 (574)
                      ..+....+   +++.+++.|.+.+.+.+...+..+++..|.  +++|+.+++......++|.++||.++|++.+..|||+
T Consensus        85 ~~~~~~~~---~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~  159 (382)
T TIGR00902        85 AAFSAGAH---NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQN  159 (382)
T ss_pred             HHHHHhhh---hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence            11222222   256677778876666655555667776554  4678888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccc
Q 008185          279 MFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSM  358 (574)
Q Consensus       279 ~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~  358 (574)
                      .|++.++..+ ..+..+.++|+..+..+ +++    +.     .+..++.++.+++|+++...+..++.......+....
T Consensus       160 ~f~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~----~~-----~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~  228 (382)
T TIGR00902       160 ILAILTAGLA-FMLIGFLIKPTIPPKDA-IPE----DE-----SQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFS  228 (382)
T ss_pred             HHHHHHHHHH-HHHHHHHcCCCCCCCcc-ccc----cc-----cccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998765532 22223334443211111 000    00     0011233456788888776655544233222223333


Q ss_pred             eeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEe
Q 008185          359 FCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVL  438 (574)
Q Consensus       359 ~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l  438 (574)
                      +.|.++ +|.++.+.|+......++.+++..+.+++.||++.|+++.++.++..+..... ...         ++.+..+
T Consensus       229 ~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~-~~~---------~~~~~~~  297 (382)
T TIGR00902       229 AIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII-GAI---------EAFPLIF  297 (382)
T ss_pred             HHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH-HhH---------hhHHHHH
Confidence            445554 89999999999888999999999999999999999999887776665443221 111         1112112


Q ss_pred             ehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHH-HHHhHHHHHHHHHHHHHHhhC
Q 008185          439 CFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSAS-ALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       439 ~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~-~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      ....+..........+.+.++.+. |++.++++++++++ ...+|..+|+.++|.+.+.+|
T Consensus       298 ~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g  357 (382)
T TIGR00902       298 LLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG  357 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            222232222234444456677777 99999999999875 457899999999999999876

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.92  E-value=2.5e-24  Score=223.21  Aligned_cols=344  Identities=19%  Similarity=0.161  Sum_probs=226.9

Q ss_pred             HHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHH
Q 008185          123 GYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGP  200 (574)
Q Consensus       123 ~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~  200 (574)
                      .++...+.. +.....+.++.+++|.+..+.+++.+++.++..+ .|++|+++||+     +||+.+.++.++..++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~~~   78 (352)
T PF07690_consen    4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-----GRRRVLIIGLLLFALGSLL   78 (352)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCeeeEeehhhhhhhHHHH
Confidence            344444443 3444444367888999999999999999887655 88999999985     4666777787777777444


Q ss_pred             hhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 008185          201 LALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMF  280 (574)
Q Consensus       201 ~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f  280 (574)
                      ..+. ++   .+.+++.|++.+++.+...+...+++.|..++++|++++++...+..+|.++||.+++++.+..+||+.|
T Consensus        79 ~~~~-~~---~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~  154 (352)
T PF07690_consen   79 LAFA-SN---FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAF  154 (352)
T ss_dssp             HHHH-CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHH
T ss_pred             hhhh-hh---HHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccc
Confidence            4433 22   4467888999999999988889999999999999999999999999999999999999999889999999


Q ss_pred             HHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHH-HHHHHcchhhHHHHHHHHhHhhhcccccccc
Q 008185          281 LVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSD-LIATIGEESISYPLTWLVASVAMVPVLSGSM  358 (574)
Q Consensus       281 ~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~  358 (574)
                      ++.+++.++..++. ++++|++.+..+.++++.  +   +..++..++ .+...++|.++......++............
T Consensus       155 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (352)
T PF07690_consen  155 LISAILSLIAAILFILFLPEPPPPRERESPKES--E---SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFL  229 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCC---STTTT--SSTTT--T-----HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhHhhhhhhccccccccccccc--c---cccccccccccccccccchhhhhhhhhhHHHHHHHHhhccc
Confidence            99999888877653 455554433221111100  0   001111112 2333455555422222222111222233334


Q ss_pred             eeehccccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEE
Q 008185          359 FCYQTQCLNIN-PSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFV  437 (574)
Q Consensus       359 ~~~~~~~~g~s-~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~  437 (574)
                      +.|..+.+|++ ..+.+.......++.+++..+.+++.+|+++++..........+..+........       .+....
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  302 (352)
T PF07690_consen  230 PLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS-------SSPVWL  302 (352)
T ss_dssp             HHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH-------CHHHHH
T ss_pred             chhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHH
Confidence            44567789999 7888888888888888888899999999988766655544443333221111110       011111


Q ss_pred             eehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHH
Q 008185          438 LCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASG  487 (574)
Q Consensus       438 l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~  487 (574)
                      +....+.....+........++.+..|++.+|+++|+.++..++|..+||
T Consensus       303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            11222222222333444567889999999999999999999999998886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11462 putative transporter; Provisional

Probab=99.92  E-value=2.4e-22  Score=217.56  Aligned_cols=384  Identities=15%  Similarity=0.071  Sum_probs=239.1

Q ss_pred             hhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccch-
Q 008185          133 PWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKA-  210 (574)
Q Consensus       133 ~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~-  210 (574)
                      ....+.+++.+.+|+++..+|++..+..+-.++ +|+.|.++||.+.+.+|||||++++.+...+++.++...++.... 
T Consensus        28 ~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~  107 (460)
T PRK11462         28 VMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNG  107 (460)
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcch
Confidence            334455678899999999999999988876655 999999999998886799999999988888887766655532111 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCccchHHHHHHHHHHHHHHHHHHHHHhhcc-------CChhHHHH
Q 008185          211 -LPNLMACVLLSNLGASITEVAKDALVAEYGQK-NGIVGLQSYAFMAAASGGILGNLFGGYFLLK-------TPPTTMFL  281 (574)
Q Consensus       211 -~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~-~~rg~~~s~~~~~~~~G~~igp~igg~l~~~-------~gwr~~f~  281 (574)
                       ..++.+..++..++.+..+++..++.+|++++ +||+++.++...+..+|..+++.+...+.+.       .||+....
T Consensus       108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~  187 (460)
T PRK11462        108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIA  187 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence             22344445556778888899999999999975 8999999988888888888887776554432       36888888


Q ss_pred             HHHHHHHHHHHHhh-hcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhccccccccee
Q 008185          282 VFAVLLSLQLAISF-SAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFC  360 (574)
Q Consensus       282 i~ai~~~~~~~~~~-~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~  360 (574)
                      +.+++..++.++.+ ..||+.....+           +.+.++   .++..++||.+...+...++.+...........|
T Consensus       188 i~~ii~~i~~~i~~~~~kE~~~~~~~-----------~~~~~~---~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y  253 (460)
T PRK11462        188 VLSVVAFMMLAFCFFTTKERVEAPPT-----------TTSMRE---DLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMY  253 (460)
T ss_pred             HHHHHHHHHHHHHHhcceeccCCCcc-----------CCCHHH---HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence            88777666655544 46775422110           011232   2334467776655443332322222222333445


Q ss_pred             ehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeeh
Q 008185          361 YQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCF  440 (574)
Q Consensus       361 ~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~  440 (574)
                      |.+...|. +...+.......++.+++..+.+++.+|+++|+++..+.++..+..+.. .+...       .+.+.....
T Consensus       254 ~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~  324 (460)
T PRK11462        254 YVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAM-FFVPM-------QASITMFVF  324 (460)
T ss_pred             hhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHhch-------hHHHHHHHH
Confidence            55555553 3344555566677888888889999999998887654443333222221 11110       011000111


Q ss_pred             hHHHHHHHHhhHHHHHHHHHhhcC-------CChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCC-CC---hh-
Q 008185          441 AGLAETLAQFKLLPFSMLLARLCP-------QGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDY-SS---LP-  508 (574)
Q Consensus       441 ~~l~~~~~~~~~~p~~~l~~~~~p-------~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~-~~---l~-  508 (574)
                      ..+..............+++|..+       ++.+|..++..+...++|.++++.++|.+.+..|+..+.- ++   .. 
T Consensus       325 ~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~~~~~~q~~~~~~~  404 (460)
T PRK11462        325 IFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDAAEKAQNSATISI  404 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence            111111111111111344455443       6778999999999999999999999999999888864211 11   11 


Q ss_pred             ---HHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHH
Q 008185          509 ---VGIVIQFLAALLPLIWI-HNVPMSETIIEKGR  539 (574)
Q Consensus       509 ---~~~li~~~~~ll~l~~~-~~vp~~~~~~~~~~  539 (574)
                         ....+.+++.+++++.+ .+.|-+|++.+|.+
T Consensus       405 i~~~~~~~P~~~~~~~~~~~~~~y~l~~~~~~~i~  439 (460)
T PRK11462        405 IIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVM  439 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence               22234444445555554 46788888776643

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=7.4e-23  Score=224.29  Aligned_cols=414  Identities=13%  Similarity=0.061  Sum_probs=241.5

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHh-----cCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccch
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHN-----LSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIP  185 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~-----~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~  185 (574)
                      .+....++.++.+..+++. ......+ .+..+     .+.+..+.+++.+.+.++..+ .+++|+++||+     +||+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-----Grr~   87 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-----GRKR   87 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccHH
Confidence            3445555677778888876 4343333 33332     234566778888888888766 77899999985     5777


Q ss_pred             hHhHHHHHHHHHHHHhhcccCccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHH
Q 008185          186 YICIGVFLQILSWGPLALFPVAAK--ALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILG  263 (574)
Q Consensus       186 ~l~i~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~ig  263 (574)
                      .+.++.++..++..+.+...+...  .+..++++|++.+++.+...+....++.|.+|+++||.++++.+....+|.++|
T Consensus        88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g  167 (502)
T TIGR00887        88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG  167 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence            776677766666665555433111  145678899999999998888888999999999999999999999999999999


Q ss_pred             HHHHHHhhc-----------------------cCChhHHHHHHHHHHHHHHHHhhhcccccccccccchh-cch-----h
Q 008185          264 NLFGGYFLL-----------------------KTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQ-NVA-----S  314 (574)
Q Consensus       264 p~igg~l~~-----------------------~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~-~~~-----~  314 (574)
                      +.++.++..                       ..+||++|.+.++..++..+..+++||++++...++++ +.+     +
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~  247 (502)
T TIGR00887       168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA  247 (502)
T ss_pred             HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence            988876532                       24799999888776665555567899998864321111 000     0


Q ss_pred             ------hhhhhh---H---HH-HHHHHHHHHcc---hhhHHHHHHHHhHhh----hcccccccceeehccccCCCchhHH
Q 008185          315 ------KSIAQS---I---KK-QFSDLIATIGE---ESISYPLTWLVASVA----MVPVLSGSMFCYQTQCLNINPSVIG  374 (574)
Q Consensus       315 ------~~~~~~---~---~~-~~~~~~~~~~~---~~v~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~g~s~~~~g  374 (574)
                            +...+.   .   ++ ....+++++++   ++..+..+...+.+.    ..+......|.++ +..|+++...+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~-~~~G~~~~~~~  326 (502)
T TIGR00887       248 VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVIL-SAIGYSPPAAT  326 (502)
T ss_pred             HhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHH-HHHcCCCCccc
Confidence                  000000   0   00 00122333321   222121111111011    1111111123333 24666543211


Q ss_pred             -----------H-HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          375 -----------M-SRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       375 -----------l-~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                                 . ..+...++.+++..+.+++.+|+++|++++.+.++.+++.++.........     ....  +....
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~-----~~~~--~~~~~  399 (502)
T TIGR00887       327 NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS-----THGF--LAIYV  399 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc-----hhHH--HHHHH
Confidence                       1 123344566667778888999999999887776655544332221111000     0000  01111


Q ss_pred             HHHHHHHhhHHH-HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCC--ChhHHHHHHHHHHH
Q 008185          443 LAETLAQFKLLP-FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYS--SLPVGIVIQFLAAL  519 (574)
Q Consensus       443 l~~~~~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~--~l~~~~li~~~~~l  519 (574)
                      +..........+ ...+.+|..|.+.||+++|+.+.+..+++.+++.+.+.+.+.-+.+.+.+.  .....+.+.++..+
T Consensus       400 ~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~  479 (502)
T TIGR00887       400 LAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMF  479 (502)
T ss_pred             HHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHH
Confidence            111111122222 235578999999999999999999999999999999988774321110000  11222333333334


Q ss_pred             HHHHHHHhcCCCHHHHHHHHh
Q 008185          520 LPLIWIHNVPMSETIIEKGRK  540 (574)
Q Consensus       520 l~l~~~~~vp~~~~~~~~~~~  540 (574)
                      ++.++.+++||++++++||..
T Consensus       480 ~~~i~~~~lpEt~~~~leei~  500 (502)
T TIGR00887       480 LGILFTLLIPETKGKSLEELS  500 (502)
T ss_pred             HHHHHheEeccCCCCCHHhhh
Confidence            444455788999998887754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.92  E-value=1.6e-22  Score=214.53  Aligned_cols=324  Identities=18%  Similarity=0.120  Sum_probs=212.8

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACV  218 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (574)
                      .+.+++|.|+.+.++..+.+.+++.+ .|++|+++||+     +||+.+.++.++..++.......++    +..+++.|
T Consensus        33 ~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~  103 (394)
T PRK11652         33 DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-----GRRPVILVGMSIFILGTLVALFAHS----LTVLIAAS  103 (394)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-----CChHHHHHHHHHHHHHHHHHHHHcc----HHHHHHHH
Confidence            45677999999999999999998876 78899999985     5666776677766666665555432    56678889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH-hhhc
Q 008185          219 LLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI-SFSA  297 (574)
Q Consensus       219 ~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~-~~~l  297 (574)
                      ++.+++.+...+....+..|..++++++.++++...+..+|..+||.+++++.+..|||+.|++.++..++..++ .+++
T Consensus       104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  183 (394)
T PRK11652        104 AIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWM  183 (394)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhC
Confidence            998888777766777788898888889999999889999999999999999998889999999988777665554 3567


Q ss_pred             ccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHH
Q 008185          298 REESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSR  377 (574)
Q Consensus       298 pEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~  377 (574)
                      ||++....+        +   ++.+   +..+..+++|.++...+..+........+....+.+..+.+|+++.+.|+..
T Consensus       184 ~~~~~~~~~--------~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  249 (394)
T PRK11652        184 PETRPADAR--------R---TRVL---ASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILF  249 (394)
T ss_pred             CccCccccc--------h---hHHH---HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHH
Confidence            886432110        0   1111   2333446677665544433332211111222234456677999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHH-HH
Q 008185          378 VIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLP-FS  456 (574)
Q Consensus       378 i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p-~~  456 (574)
                      ....++.+++..+.+++.+|++++...  .........+......  ..   ...+.+.... ..+..+++.....| ..
T Consensus       250 ~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~-~~~~~~~g~~~~~~~~~  321 (394)
T PRK11652        250 ILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPG--WF---GVMNVWTLLV-PAALFFFGAGMLFPLAT  321 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--Hh---ccccHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            888899999999999999887632222  2111111111111110  00   0011111111 11222222222333 34


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          457 MLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       457 ~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      .+..+..| +.+|++.++.+...++|..+++.+++.+.+
T Consensus       322 ~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        322 SGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            55667776 578999999999999999988888776543

>PRK12382 putative transporter; Provisional

Probab=99.92  E-value=2.7e-22  Score=212.63  Aligned_cols=329  Identities=16%  Similarity=0.083  Sum_probs=207.7

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHH---HhhcccC-
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWG---PLALFPV-  206 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~---~~~~~~~-  206 (574)
                      +..+.++.++++++|.|+.+.|++.+.+.+++.+ +|++|+++||+     +||+.+.++.+...++..   ..+..+. 
T Consensus        33 ~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~~~~  107 (392)
T PRK12382         33 LPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-----GAKRSALQGMLACGLAGLAYLLAAILPVS  107 (392)
T ss_pred             HHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-----cchHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            4445566678888999999999999999998766 99999999995     455566656555444332   2222211 


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 008185          207 AAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVL  286 (574)
Q Consensus       207 ~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~  286 (574)
                      ...++..+++.|++++++.+...+...+.+.|..++++|++++++...+..+|.++||.+++++.+..|||+.+++.++.
T Consensus       108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        108 APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            11235667888999999988777777788899999999999999999888899999999999999889999988876554


Q ss_pred             HHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehcccc
Q 008185          287 LSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCL  366 (574)
Q Consensus       287 ~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  366 (574)
                      .++........||++.+.   ++     +   .+.++..+..    ..+.+... ++.+ .+..   .....+.|+.+ .
T Consensus       188 ~~~~~~~~~~~~~~~~~~---~~-----~---~~~~~~~~~~----~~~~~~~~-l~~~-~~~~---~~~~~~~~~~~-~  246 (392)
T PRK12382        188 PLLAWAFNGTVRKVPAHA---GE-----R---PSLWSVVGLI----WKPGLGLA-LQGV-GFAV---IGTFVSLYFAS-K  246 (392)
T ss_pred             HHHHHHHHHhccCCCCCc---cc-----C---chHHHHHHHH----HHhHHHHH-HHHH-HHhH---HHHHHHHHHHh-c
Confidence            433322222334432111   00     0   1112222211    11221111 1111 0111   11111223332 4


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHH
Q 008185          367 NINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAET  446 (574)
Q Consensus       367 g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~  446 (574)
                      |++.  .++......++.+++..+.+++.+|+++|+.+..+..+..+..+. ....         ++.+..+.. .+..+
T Consensus       247 ~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~-~~l~g  313 (392)
T PRK12382        247 GWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL-LWLA---------PTAWVALAG-AALTG  313 (392)
T ss_pred             CCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH-HHHc---------ccHHHHHHH-HHHHH
Confidence            5543  455555566777888888999999999988877766555443322 1111         111111111 11112


Q ss_pred             HHHhhHHH-HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          447 LAQFKLLP-FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       447 ~~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      ++.....| ..+...+.+|++.+|+++|++++..++|..++|.+.|.+.+..|+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~  367 (392)
T PRK12382        314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGY  367 (392)
T ss_pred             HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            22222233 345678889999999999999999999999999999999998774

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.92  E-value=1.7e-22  Score=212.54  Aligned_cols=260  Identities=17%  Similarity=0.183  Sum_probs=193.1

Q ss_pred             hhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHH
Q 008185          135 LALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPN  213 (574)
Q Consensus       135 ~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~  213 (574)
                      +..+ .+.+++|+++.+.++..+++.++..+ .|++|+++||+     +||+++..+.++..++...+...++    ++.
T Consensus        12 p~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~i~~~~~~~~~~----~~~   81 (377)
T PRK11102         12 PALP-VIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-----GRKPVILGGTLVFALAAVACALAQT----IDQ   81 (377)
T ss_pred             ccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-----CChHHHHHHHHHHHHHHHHHHHHcc----HHH
Confidence            3444 44566999999999999999988766 78899999985     5777777777777777776665532    566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 008185          214 LMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI  293 (574)
Q Consensus       214 l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~  293 (574)
                      ++++|++.+++.+...+...+++.|..++++|++++++.+....+|..+||.+++.+.+..+||+.|++.+++..+..+.
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL  161 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence            77889999998888888888999999999999999999999999999999999999999899999999988877766555


Q ss_pred             h-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchh
Q 008185          294 S-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSV  372 (574)
Q Consensus       294 ~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~  372 (574)
                      . +++||++....+.+          .+.++..++.++.+++|.++...+..++.+.....+....++++.+.+|+++.+
T Consensus       162 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  231 (377)
T PRK11102        162 VFFFIPETLPKERRQP----------FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQN  231 (377)
T ss_pred             HHHhCCccCcccccCC----------CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHH
Confidence            4 56787643221100          011222334445577777665544433322222222233344566778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 008185          373 IGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASS  414 (574)
Q Consensus       373 ~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~  414 (574)
                      .|+......++.+++..+.+++.||+++|+.+..+.++..+.
T Consensus       232 ~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        232 FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIM  273 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887776554333

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=5e-23  Score=216.99  Aligned_cols=360  Identities=15%  Similarity=0.084  Sum_probs=228.2

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|..+....+.++..++.. ......+ .+.+++|.++.+.+++.++..++..+ .++.|+++||+     +||+.+..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~   88 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAP-AISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-----GRKRVLLWS   88 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHH-HHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-----hhHHHHHHH
Confidence            4555555555666665544 2333333 55677999999999999998888766 78899999985     567777777


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++..+.....+    ++.+++.+++.+++.+...+...+++.|..++++|+.++++...+..+|..+||.+++++
T Consensus        89 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  164 (398)
T TIGR00895        89 ILLFSVFTLLCALATN----VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL  164 (398)
T ss_pred             HHHHHHHHHHHHHccc----hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence            7776776666655532    456778899988888888888889999999999999999999999999999999999999


Q ss_pred             hccCChhHHHHHHHHHHHHHHHH-hhhcccccccccccchhcc----hh------------hhhhhhHHHHHHHHHHHHc
Q 008185          271 LLKTPPTTMFLVFAVLLSLQLAI-SFSAREESLGLAQVSYQNV----AS------------KSIAQSIKKQFSDLIATIG  333 (574)
Q Consensus       271 ~~~~gwr~~f~i~ai~~~~~~~~-~~~lpEt~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~  333 (574)
                      .+..|||+.|++.+++..+..++ .+++||++....+++.++.    ++            .......++..++.++.++
T Consensus       165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (398)
T TIGR00895       165 IPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALF  244 (398)
T ss_pred             hhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHh
Confidence            99999999999987666655554 3567876532211100000    00            0000000001111112111


Q ss_pred             ch----hhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 008185          334 EE----SISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQI  409 (574)
Q Consensus       334 ~~----~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~l  409 (574)
                      ++    ..+...+..++............+ ++.+.+|+++.+.++......++.+++..+.+++.+|+++|++.... .
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~  322 (398)
T TIGR00895       245 QGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-L  322 (398)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-H
Confidence            11    111111111111111111112223 34456899998999988888899999999999999999988444333 2


Q ss_pred             HHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHH
Q 008185          410 LYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFL  489 (574)
Q Consensus       410 l~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i  489 (574)
                      +..+...+.....         .+.........+..............++++.+|++.+|+++|+.+++.++|..+||.+
T Consensus       323 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  393 (398)
T TIGR00895       323 LGAVFAVLVGSTL---------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPIL  393 (398)
T ss_pred             HHHHHHHHHHHHh---------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222222111100         1111111111222222223333346778999999999999999999999999999999


Q ss_pred             HHHH
Q 008185          490 GVGL  493 (574)
Q Consensus       490 ~g~l  493 (574)
                      +|.+
T Consensus       394 ~G~l  397 (398)
T TIGR00895       394 AGYL  397 (398)
T ss_pred             HHhc
Confidence            8865

>PRK03699 putative transporter; Provisional

Probab=99.91  E-value=3.1e-22  Score=212.52  Aligned_cols=350  Identities=9%  Similarity=0.005  Sum_probs=222.8

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      ||...+.+++.++..+... ......+ .+++++|+|.++.++..+.+.+++.+ .++.|+++||+     +||+.+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----g~r~~~~~~   78 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMG-PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-----PLKRQLIFG   78 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHH
Confidence            4445555666666665543 3333344 46778999999999999999888876 77899999985     566666667


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++..+.+..++    +..++++|++.+++.+.......+.+.|..++++|+.+++..+....+|..++|.+.+++
T Consensus        79 ~~~~~i~~~l~~~~~~----~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699         79 FALMILAVAGLMFSHS----LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             HHHHHHHHHHHHHcch----HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666665532    566788899988887776666678889999888899998888788888999999998887


Q ss_pred             hc-cCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhh
Q 008185          271 LL-KTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVA  349 (574)
Q Consensus       271 ~~-~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~  349 (574)
                      .. ..|||+.|++.+++.++..++.++.+ .+....+.+++      ..+..    +.    ..++.++...+..++...
T Consensus       155 ~~~~~gw~~~f~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~------~~~~~----~~----~~~~~~~~~~~~~~~~~~  219 (394)
T PRK03699        155 LARSIEWYWVYACIGLVYVAIFILTLFSE-FPALGKHAPKA------DKPVA----KE----KWGIGVLFLAIAALLYIL  219 (394)
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhcC-CccccccCccc------cCccc----cc----cCChHHHHHHHHHHHHHH
Confidence            64 57999999998877766554443321 11111000000      00000    00    112333333322222111


Q ss_pred             hcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 008185          350 MVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQF  429 (574)
Q Consensus       350 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~  429 (574)
                      .........|.|..+.+|+++.+.+.......++.+++..+.+++.||+++|+.+....++..+.... +...       
T Consensus       220 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~-~~~~-------  291 (394)
T PRK03699        220 AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL-FVNT-------  291 (394)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH-HHHc-------
Confidence            11122233455677789999999999888888888889999999999999998877655444332211 1110       


Q ss_pred             CcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          430 GVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       430 ~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                        ++.........+. ++......|. .....+..|+ .+++..|......++|..++|.+.|.+.+..|+
T Consensus       292 --~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~  358 (394)
T PRK03699        292 --DDPSHLLYAILGL-GFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGL  358 (394)
T ss_pred             --CCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCc
Confidence              1111111111111 1211122222 3345565554 457778888888999999999999999998775

>TIGR00898 2A0119 cation transport protein

Probab=99.91  E-value=6.2e-23  Score=224.89  Aligned_cols=362  Identities=17%  Similarity=0.070  Sum_probs=228.8

Q ss_pred             HHHHhcCCC---hhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          140 HMAHNLSLH---PSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       140 ~l~~~~~~s---~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      .+.+|++++   ..+.++..+++.+++.+ .+++|+++||+     +||+.++++.++..++.++.++.++    ++.++
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-----Grr~~~~~~~~~~~i~~~~~~~~~~----~~~~~  184 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-----GRKKVLLLSTLVTAVSGVLTAFSPN----YTVFL  184 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-----cchHHHHHHHHHHHHHHHHHHHccc----HHHHH
Confidence            456789998   89999999999999877 77899999985     5667777777777777776666543    67788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISF  295 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~  295 (574)
                      ++|++.+++.+...+...+++.|..++++|+.+.++...+..+|.+++|.+++.+.   +||+.|++.++..++..+..+
T Consensus       185 ~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~  261 (505)
T TIGR00898       185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSW  261 (505)
T ss_pred             HHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988877788899999999999999999988888999999999987664   399999999888776666667


Q ss_pred             hcccccccccccchhcchhh---------------hh-hhhHHHH---H---HHHHHHHcchhhHHHHHHHHhHhhhccc
Q 008185          296 SAREESLGLAQVSYQNVASK---------------SI-AQSIKKQ---F---SDLIATIGEESISYPLTWLVASVAMVPV  353 (574)
Q Consensus       296 ~lpEt~~~~~~~~~~~~~~~---------------~~-~~~~~~~---~---~~~~~~~~~~~v~~~~l~~~l~~~~~~~  353 (574)
                      ++||++++...+++.+.+++               .. ....++.   .   ...+.++++|.++...+...+.+.....
T Consensus       262 ~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  341 (505)
T TIGR00898       262 FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF  341 (505)
T ss_pred             hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            89998765321111100000               00 0000000   0   1334567777766554433332222111


Q ss_pred             ccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCc
Q 008185          354 LSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPN  433 (574)
Q Consensus       354 ~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~  433 (574)
                      .......+ ...++.+..   ...+..++..+++..+.+++.+|+++|+.+.++.++.+++.+... ....       ..
T Consensus       342 ~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~-~~~~-------~~  409 (505)
T TIGR00898       342 SYYGLVLD-LGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL-FVPV-------DL  409 (505)
T ss_pred             HHHHHhcc-ccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HcCC-------Cc
Confidence            11111112 223444422   233344556667777778888999999888777666555433221 1110       00


Q ss_pred             ceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHH
Q 008185          434 EVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVI  513 (574)
Q Consensus       434 ~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li  513 (574)
                      .+.......+..+.....+.....+.+|.+|++.|++++|+.+++..+|+.++|.+.+ +.+. +.        ...+.+
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-~~--------~~~~~~  479 (505)
T TIGR00898       410 YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK-WL--------FLPLVL  479 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-HH--------hhHHHH
Confidence            0111111111111112222233567789999999999999999999999999999888 4332 21        122333


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHH
Q 008185          514 QFLAALLPLIWIHNVPMSETII  535 (574)
Q Consensus       514 ~~~~~ll~l~~~~~vp~~~~~~  535 (574)
                      .+++.+++.+...++||++++.
T Consensus       480 ~~~~~~~~~~~~~~lpet~~~~  501 (505)
T TIGR00898       480 FGGLALLAGILTLFLPETKGVP  501 (505)
T ss_pred             HHHHHHHHHHHHHcCcCCCCCC
Confidence            3444444455566789887643

>PRK11043 putative transporter; Provisional

Probab=99.91  E-value=1.4e-21  Score=207.70  Aligned_cols=324  Identities=15%  Similarity=0.078  Sum_probs=212.9

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACV  218 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (574)
                      .+++++|.++++.++..+++.++..+ .+++|+++||+     +||+.+..+.++..++..+.+..++    ++.+++.|
T Consensus        31 ~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~  101 (401)
T PRK11043         31 AIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-----GRKPVLLAGLSLFALGSLGMLWVES----AAQLLVLR  101 (401)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-----CCcHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHH
Confidence            46778999999999999999998766 78899999985     5666777777676666666655532    56678889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhcc
Q 008185          219 LLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAR  298 (574)
Q Consensus       219 ~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~~lp  298 (574)
                      ++.+++.+...+...+++.|..++++++...+..+....+|..+||.+++++.+..|||+.|++.+++.++..+..++++
T Consensus       102 ~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  181 (401)
T PRK11043        102 FVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLK  181 (401)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcC
Confidence            99888877766667788999998888888888888888899999999999999999999999999888777666555566


Q ss_pred             cccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHH
Q 008185          299 EESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRV  378 (574)
Q Consensus       299 Et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i  378 (574)
                      |++....  +          +..+   ...++.+++|..+...+...+.......+....+++.. .+|+++.+.|+..+
T Consensus       182 ~~~~~~~--~----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~  245 (401)
T PRK11043        182 PSKKARK--Q----------SQDA---LTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYV  245 (401)
T ss_pred             CCCCccc--c----------chHH---HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHH
Confidence            5432111  0          0001   12334456666554333222211111112222344443 47999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH-HH
Q 008185          379 IGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF-SM  457 (574)
Q Consensus       379 ~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~-~~  457 (574)
                      ...++.+++..+.+++.+|+++|+......++.+++.+....... .    . .+.+..........+.+.....|. ..
T Consensus       246 ~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (401)
T PRK11043        246 PQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASL-L----S-HPSLVPLLIPFCVMAAANGAIYPIVVA  319 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH-h----c-cCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999888665444433333222111110 0    0 111111111111111222223333 33


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          458 LLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       458 l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      ...+..| +.+|++.|++++++..+..+++.+.|.+.+
T Consensus       320 ~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        320 QALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            3445555 579999999999988888888888777655

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.91  E-value=7e-23  Score=219.96  Aligned_cols=376  Identities=20%  Similarity=0.191  Sum_probs=253.1

Q ss_pred             hhHHHHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcc-cCccc---h
Q 008185          136 ALNFHMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALF-PVAAK---A  210 (574)
Q Consensus       136 ~~~~~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~-~~~~~---~  210 (574)
                      .+.+++.+.+|+++..+|++..+..+-.+ .+|+.|.++||.+.+.+||||+++++.++..+++.++... +....   .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            44557788899999999999998877554 5999999999988877799999999999988888877766 31111   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCccchHHHHHHHHHHHHHHHHHHHHHhhcc-------CChhHHHHH
Q 008185          211 LPNLMACVLLSNLGASITEVAKDALVAEYGQK-NGIVGLQSYAFMAAASGGILGNLFGGYFLLK-------TPPTTMFLV  282 (574)
Q Consensus       211 ~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~-~~rg~~~s~~~~~~~~G~~igp~igg~l~~~-------~gwr~~f~i  282 (574)
                      ..++.+..++..++.+..+++..++.+|++++ ++|.++.+....+..+|.++...+.+.+.+.       .+|++++++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            22334555555788888889999999999975 7899999988888888887666666665532       169999999


Q ss_pred             HHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceee
Q 008185          283 FAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCY  361 (574)
Q Consensus       283 ~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~  361 (574)
                      .+++.++..++. +.+||+.....+.        ....+.++   .++..++||.+....+..++.+..........+||
T Consensus       183 ~~iv~~v~~~i~~~~~ke~~~~~~~~--------~~~~~~~~---~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~  251 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKERSVEVTEQ--------EKKISLRD---SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYY  251 (428)
T ss_pred             HHHHHHHHhhhhhheeeecccccccc--------cccccccc---chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            998888877775 5689832221111        01112222   23445678877666555554333333444556677


Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      .++.+|.+ ...+.......++.+++.++.+++.||+++|+.+..+.++.++..+....+..        .+.+..+...
T Consensus       252 ~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~  322 (428)
T PF13347_consen  252 FTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP--------GSPWLVLILF  322 (428)
T ss_pred             HHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--------hhHHHHHHHH
Confidence            77778766 56677777788888999999999999999999998888877766554322210        1122212212


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhcC-------CChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCC-CCChh-----
Q 008185          442 GLAETLAQFKLLPFSMLLARLCP-------QGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGD-YSSLP-----  508 (574)
Q Consensus       442 ~l~~~~~~~~~~p~~~l~~~~~p-------~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~-~~~l~-----  508 (574)
                      .+.+...+........+.+|.++       ++.+|..+|+.+...+++.++++.+.+.+.+..|++.+. .+.-.     
T Consensus       323 ~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~~~q~~~~~~~i  402 (428)
T PF13347_consen  323 ILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANAAVQSASALSGI  402 (428)
T ss_pred             HHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCcCcCCHHHHHHH
Confidence            22221112222222344555543       567899999999999999999999999999999987543 22211     


Q ss_pred             --HHHHHHHHHHHHHHHHHHhcCCC
Q 008185          509 --VGIVIQFLAALLPLIWIHNVPMS  531 (574)
Q Consensus       509 --~~~li~~~~~ll~l~~~~~vp~~  531 (574)
                        ....+.+++.+++++++.++|-+
T Consensus       403 ~~~~~~~p~~~~~~~~i~~~~y~l~  427 (428)
T PF13347_consen  403 RILFSIVPAIFLLLAIIFMRFYPLT  427 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCC
Confidence              22334444445555555666644

>PRK10054 putative transporter; Provisional

Probab=99.91  E-value=3.2e-22  Score=212.51  Aligned_cols=351  Identities=12%  Similarity=0.105  Sum_probs=224.5

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      |+..+. +.+..++..+.. ...+.++.++++++|.+..++++..+++.+...+ +|+.|.++||+     +||+.++++
T Consensus         6 ~~~~~~-l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~k~~~~~~   79 (395)
T PRK10054          6 RRSTSA-LLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-----DKKRYMLLA   79 (395)
T ss_pred             CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CcchhHHHH
Confidence            344444 334444444443 4444455688888999999999999998776654 89999999985     456667667


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .+...++..+.++.++    ++.+++++.+.+.+.+.......+...|..++++|++++++.+...++|.++||.+++++
T Consensus        80 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l  155 (395)
T PRK10054         80 ITAFASGFIAIPLVNN----VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL  155 (395)
T ss_pred             HHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766666666655542    444556666665555555556678889999888999999999999999999999999988


Q ss_pred             hccCChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhh
Q 008185          271 LLKTPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVA  349 (574)
Q Consensus       271 ~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~  349 (574)
                      .+ .||+++|++.++..++..++. +++||++.+..+ +      +   +.   . .+.++.+++|.++...+..++...
T Consensus       156 ~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~-~------~---~~---~-~~~~~~~~~~~~~~~~~~~~l~~~  220 (395)
T PRK10054        156 VM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIAT-E------T---GS---V-WSPSVLLQDKALLWFTCSGFLASF  220 (395)
T ss_pred             HH-hccCcHHHHHHHHHHHHHHHHHHHHhcccccccc-c------h---hh---h-hhhhhhccCceehHHHHHHHHHHH
Confidence            75 799999999887776665544 456665422110 0      0   00   0 112345677877665544333111


Q ss_pred             hcccccccceeehc--cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhc
Q 008185          350 MVPVLSGSMFCYQT--QCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINL  427 (574)
Q Consensus       350 ~~~~~~~~~~~~~~--~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~  427 (574)
                      ....+....+.|..  +..+.+....+.......+..+......+++.+|+++|+.+..+.++.++.... +....    
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~----  295 (395)
T PRK10054        221 VSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVG-FIFSG----  295 (395)
T ss_pred             HHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHH-HHHcc----
Confidence            11111111122222  234556666777766666666666677788889998888877665544443321 11110    


Q ss_pred             ccCcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          428 QFGVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       428 ~~~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                          .+.+ .+....+..+++.....|. .+++.+..|++.+|++++..+ ...+|.++||.++|.+.+.+|.
T Consensus       296 ----~~~~-~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~  362 (395)
T PRK10054        296 ----NSLL-LWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPP  362 (395)
T ss_pred             ----hHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcCh
Confidence                0111 1111122223333444444 456788999999999999755 6778999999999999998874

>PRK09848 glucuronide transporter; Provisional

Probab=99.91  E-value=3.6e-21  Score=207.87  Aligned_cols=381  Identities=12%  Similarity=0.014  Sum_probs=229.2

Q ss_pred             hhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCc-cc--h
Q 008185          135 LALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVA-AK--A  210 (574)
Q Consensus       135 ~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~-~~--~  210 (574)
                      ..+..|+++.+|+++.++|++.++..+..++ +|++|.++||...+.+||||++..+.+...++..++...+.. ..  .
T Consensus        29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (448)
T PRK09848         29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK  108 (448)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence            3344578888999999999999998887665 899999999987665588999877776555444433222211 11  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCccchHHHHHHH-----HHHHHHHHHHHHHHhhccC--ChhHHHHH
Q 008185          211 LPNLMACVLLSNLGASITEVAKDALVAEYGQK-NGIVGLQSYAFMA-----AASGGILGNLFGGYFLLKT--PPTTMFLV  282 (574)
Q Consensus       211 ~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~-~~rg~~~s~~~~~-----~~~G~~igp~igg~l~~~~--gwr~~f~i  282 (574)
                      ...+++..++.+++.+...++..++..+++++ ++|....+....+     ..+|..++|++++......  +|.....+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~  188 (448)
T PRK09848        109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIV  188 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            12223334455667777777778888888765 6787776554432     2355666666665432111  22222233


Q ss_pred             HHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceee
Q 008185          283 FAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCY  361 (574)
Q Consensus       283 ~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~  361 (574)
                      .+++..+..++. ...||+.....+           ....++   .++.+++||.+....+..++.+..........++|
T Consensus       189 ~~v~~~~~~~~~~~~~~e~~~~~~~-----------~~~~~~---~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~  254 (448)
T PRK09848        189 LAIAGMVLYFICFKSTRENVVRIVA-----------QPSLKI---SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFY  254 (448)
T ss_pred             HHHHHHHHHHHHHcCcEeccCCCcc-----------CCCHHH---HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheee
Confidence            333333333333 346776432110           011222   23456788888766554444333333344456777


Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      .++.+|.++...++..+...++.+++.++.+++.+|++.|+.+.++.++..+..+... +...       .+.+. +...
T Consensus       255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~-~~~~-------~~~~~-~~~~  325 (448)
T PRK09848        255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF-WVSV-------WSLPV-ALVA  325 (448)
T ss_pred             EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HcCc-------hhHHH-HHHH
Confidence            8888898776655555555677888889999999999999998887766554433221 1100       01111 1111


Q ss_pred             HHHHHHHH-hhHHHHHHHHHhhcCC-------ChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCC------h
Q 008185          442 GLAETLAQ-FKLLPFSMLLARLCPQ-------GCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSS------L  507 (574)
Q Consensus       442 ~l~~~~~~-~~~~p~~~l~~~~~p~-------~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~------l  507 (574)
                      .+..+++. +...+..++.++.+|+       +.+|.++|+++..+++|.++|+.+.+.+.+..|++...-+.      .
T Consensus       326 ~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~~~~~~~i  405 (448)
T PRK09848        326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIMGI  405 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHH
Confidence            22222332 2233345666676654       45799999999999999999999999999988875321111      1


Q ss_pred             h-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 008185          508 P-VGIVIQFLAALLPLIWIHNVPMSETIIEKG  538 (574)
Q Consensus       508 ~-~~~li~~~~~ll~l~~~~~vp~~~~~~~~~  538 (574)
                      . ...++.+++.+++++.++++|.+|++.+|.
T Consensus       406 ~~~~~~~p~~~~~~~~~~~~~y~l~~~~~~~~  437 (448)
T PRK09848        406 RTSIALVPCGFMLLAFVIIWFYPLTDKKFKEI  437 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHeeCCHHHHHHH
Confidence            1 222444555556666677899988877653

>PRK15075 citrate-proton symporter; Provisional

Probab=99.91  E-value=1.3e-21  Score=210.54  Aligned_cols=363  Identities=12%  Similarity=0.026  Sum_probs=216.2

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHH-HHHhhh--hhh---h-hhhheeeccccccCCCccc
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLV-QNSGNL--PMV---A-KPLYGILSDALYIGGAHRI  184 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~-~s~~~l--~~~---~-~pl~G~lsD~~~~~G~rRk  184 (574)
                      ||.....+.++.+.+.++- ......+ .++++++.++.+.+.. .+...+  .+.   + +++.|+++||+     +||
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-----Grr   86 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYAT-AIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-----GRR   86 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-----chH
Confidence            4556666777888888876 4444444 6777899887775543 333322  222   2 45689999985     566


Q ss_pred             hhHhHHHHHHHHHHHHhhcccCccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHH
Q 008185          185 PYICIGVFLQILSWGPLALFPVAAKA----LPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGG  260 (574)
Q Consensus       185 ~~l~i~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~  260 (574)
                      +.++.+.++..++..+++++++....    ...++++|++.+++.+...+....++.|..|+++|++++++...+..+|.
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~  166 (434)
T PRK15075         87 KGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV  166 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH
Confidence            66667777777777777766532100    01357889999988877666667889999999999999999888877888


Q ss_pred             HHHHHHHHHhh--------ccCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHH
Q 008185          261 ILGNLFGGYFL--------LKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATI  332 (574)
Q Consensus       261 ~igp~igg~l~--------~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (574)
                      .+|+.+|+.+.        +..|||++|++.++...+........||++....+.+     +.+    .++..+   ...
T Consensus       167 ~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-----~~~----~~~~~~---~~~  234 (434)
T PRK15075        167 VFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH-----RPS----MREIFR---SLA  234 (434)
T ss_pred             HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-----ccc----cccHHH---HHH
Confidence            88888777653        4689999999865433222111223455432111000     000    011111   112


Q ss_pred             cchhhHHHHHHH-HhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 008185          333 GEESISYPLTWL-VASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILY  411 (574)
Q Consensus       333 ~~~~v~~~~l~~-~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~  411 (574)
                      +++..+...... ++............|.|+++.+|+++.+.++......++.+++..+.+++.||+++|+.+..+.++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~  314 (434)
T PRK15075        235 ANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLA  314 (434)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            233333221111 1111111112222455667778999888888888888888899999999999999998876654433


Q ss_pred             HHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHh-HHHHHHHHH
Q 008185          412 ASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCL-SSIASGFLG  490 (574)
Q Consensus       412 ~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~l-g~~lg~~i~  490 (574)
                      .+..+..+.....      .+..........+..............+..|..|++.||++.|+.+.+... ++.++|.+.
T Consensus       315 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~  388 (434)
T PRK15075        315 ILTAYPALSWLVA------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIS  388 (434)
T ss_pred             HHHHHHHHHHHHc------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHH
Confidence            2221111111100      011100001011111111111122345678999999999999997666654 578899999


Q ss_pred             HHHHHhhCc
Q 008185          491 VGLASLTGI  499 (574)
Q Consensus       491 g~l~~~~g~  499 (574)
                      |.+.+..|.
T Consensus       389 g~i~~~~g~  397 (434)
T PRK15075        389 TWLIHVTGD  397 (434)
T ss_pred             HHHHHhcCC
Confidence            999998763

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.90  E-value=2.3e-22  Score=215.31  Aligned_cols=344  Identities=13%  Similarity=0.090  Sum_probs=195.0

Q ss_pred             hhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchH
Q 008185          133 PWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKAL  211 (574)
Q Consensus       133 ~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~  211 (574)
                      ..+..+.++++++|+++.++|++.+++.+...+ +|++|+++||+     +||+.++++.....+...............
T Consensus        29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (420)
T PRK09528         29 WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-----GLKKHLLWIISGLLVLFGPFFIYVFAPLLQ  103 (420)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455578888999999999999999998766 88999999995     455555444333332222111100000000


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 008185          212 PNLMACVLLSNLGASIT----EVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLL  287 (574)
Q Consensus       212 ~~l~~~~~l~~~g~~~~----~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~  287 (574)
                      .......+++++..+..    ......+..+.  .++++..++.......+|.++||.++|.+.+ .+|+++|++.++..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~  180 (420)
T PRK09528        104 YNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSA  180 (420)
T ss_pred             HHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHH
Confidence            00111122222211111    11122222222  2456777787788888999999999998876 48999999988777


Q ss_pred             HHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccc--
Q 008185          288 SLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQC--  365 (574)
Q Consensus       288 ~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~--  365 (574)
                      ++..++.+++++++.+..+.++++ +++.    .+...++.++.+++|.++...++.+............++.|..+.  
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~  255 (420)
T PRK09528        181 LILLVLLFFAKPDAPSTAKVANAL-GANA----SAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFA  255 (420)
T ss_pred             HHHHHHHhcccccccchhhhccch-hccc----ccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666655554433222211100000 0000    011223444567788765544433221111111111233333332  


Q ss_pred             -cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHH
Q 008185          366 -LNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLA  444 (574)
Q Consensus       366 -~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~  444 (574)
                       .+.+..+.|+......++..++..+.+++.||+++|+.+..+.++..+..+. ..+.         ++.+..+....+.
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l-~~~~---------~~~~~~~~~~~l~  325 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIG-SGFA---------TGPLEVSILKLLH  325 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH-HHhc---------ccHHHHHHHHHHH
Confidence             3566677888888778888888899999999999999887766655443322 1111         1111111111111


Q ss_pred             HHHHHhhHHHHHHHHHhhcCCChhHHHHHH-HHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          445 ETLAQFKLLPFSMLLARLCPQGCEGSLTSF-SASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       445 ~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl-~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      .............++.+..|++.+++.++. +++..++|.++++.+.|.+.+..|+
T Consensus       326 g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~  381 (420)
T PRK09528        326 AFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGF  381 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            111112222334567888999999988766 6777899999999999999998774

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.90  E-value=1.4e-21  Score=206.74  Aligned_cols=331  Identities=13%  Similarity=0.006  Sum_probs=205.9

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCcc---chhHhHHHHHHHHHHHHhhcccCc
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHR---IPYICIGVFLQILSWGPLALFPVA  207 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rR---k~~l~i~~~~~~~~~~~~~~~~~~  207 (574)
                      +..+.++.++++ +|.|..++|+..+++.++..+ +|++|+++||+   | ||   ++.+.+....   .........++
T Consensus        22 ~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~---g-~~~~~~~~~~~~~~~---~~~~~~~~~~~   93 (382)
T PRK11128         22 VFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP---S-QLIPALRLLALLTLL---FAVAFWFGAHS   93 (382)
T ss_pred             HHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh---c-chHHHHHHHHHHHHH---HHHHHHHhccc
Confidence            344445556655 899999999999999988765 89999999985   2 32   1222222111   11122222222


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 008185          208 AKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLL  287 (574)
Q Consensus       208 ~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~  287 (574)
                         ++.+++.|++.+++.+...+..++++.|.  +++|+++++......++|.++||+++|++.+.+|||..|++.++..
T Consensus        94 ---~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~  168 (382)
T PRK11128         94 ---FWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV  168 (382)
T ss_pred             ---HHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence               56667788887776665555567777776  3557777888888889999999999999999999999999887655


Q ss_pred             HHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccC
Q 008185          288 SLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLN  367 (574)
Q Consensus       288 ~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g  367 (574)
                      ++..+..++.||+++... .+      +..    ++..+..++.+++|.++...+..++............+.|.. ++|
T Consensus       169 ~~~~~~~~~~~~~~~~~~-~~------~~~----~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g  236 (382)
T PRK11128        169 ASMLLGQLLRPTIMPQGE-SR------QQE----SAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAG  236 (382)
T ss_pred             HHHHHHHHccCCCCCccc-cc------ccc----ccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCC
Confidence            444333344565432111 00      000    001123345678888876655443311111111222233443 489


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHH
Q 008185          368 INPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETL  447 (574)
Q Consensus       368 ~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~  447 (574)
                      +++.+.|+......++.++...+.+++.||++.++.+..+.++.++..+. +...         ++.+..+....+....
T Consensus       237 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~l~g~~  306 (382)
T PRK11128        237 YSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGL-MGST---------TALPWLIVIQILHCGT  306 (382)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHhh---------hhHHHHHHHHHHHHHH
Confidence            99999999888888888888899999999999999877776655543321 1111         1112111212222211


Q ss_pred             HHhhHHHHHHHHHhhcCCChhHHHHHHHHHH-HHhHHHHHHHHHHHHHHhhC
Q 008185          448 AQFKLLPFSMLLARLCPQGCEGSLTSFSASA-LCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       448 ~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~-~~lg~~lg~~i~g~l~~~~g  498 (574)
                      ......+...+..+. +++.+++++++++.. ..+|.++||.++|.+.|.+|
T Consensus       307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g  357 (382)
T PRK11128        307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG  357 (382)
T ss_pred             HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            222233334556665 566678999988744 45777999999999999876

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.90  E-value=6.3e-22  Score=204.42  Aligned_cols=324  Identities=20%  Similarity=0.141  Sum_probs=230.1

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +.+.++...+.. ......+.+. +++|.+..+.++..++..++..+ .|++|+++||+     +||+.+.++.++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-----g~r~~~~~~~~~~~~~   77 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-----GRRRVLLLGLLLFALG   77 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----CCchhhHHHHHHHHHH
Confidence            344455555544 4444444444 55899999999999999887755 88999999985     4666777777777777


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPT  277 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr  277 (574)
                      ........+    .+.+++.|++.+++.+...+...+++.|..++++|++.+++......+|..+||.+++.+.+..+||
T Consensus        78 ~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  153 (352)
T cd06174          78 SLLLAFASS----LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR  153 (352)
T ss_pred             HHHHHHhcc----HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            776666532    5667888999988888888888999999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhccccccc
Q 008185          278 TMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGS  357 (574)
Q Consensus       278 ~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~  357 (574)
                      +.|++.++..++..+..++++                                    |.++...+..++...........
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  197 (352)
T cd06174         154 WLFLILAILGLLLALLLLFLL------------------------------------RLLLLLALAFFLLSFGYYGLLTY  197 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHhHHHHHHHH
Confidence            999999887776665544443                                    11111111111111111112222


Q ss_pred             ceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceE
Q 008185          358 MFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRK-LVGAVQILYASSLLLDLILVRQINLQFGVPNEVF  436 (574)
Q Consensus       358 ~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~-ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~  436 (574)
                      .+.+..+.+|+++.+.+.......++.+++..+.+++.||+++|+ .+..+.++..++.+... ..         ++.+.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---------~~~~~  267 (352)
T cd06174         198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-LA---------PSLAL  267 (352)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-Hh---------ccHHH
Confidence            334555566899999999999999999999999999999999998 77777666555443221 11         11111


Q ss_pred             EeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          437 VLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       437 ~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      ......+..............+..|..|+++||+.+|+.+...++|..+++.+.|.+.+..++
T Consensus       268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~  330 (352)
T cd06174         268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY  330 (352)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence            111112222222233334467788999999999999999999999999999999999886553

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.90  E-value=2.2e-21  Score=205.06  Aligned_cols=342  Identities=12%  Similarity=0.038  Sum_probs=218.6

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +..++. +.++.+..++.. +..+.++.+ .+++|.|..++|++.+.+.++..+ .|++|+++||+     +||+.+..+
T Consensus         5 ~~~~~~-~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-----g~k~~~~~~   77 (381)
T PRK03633          5 TRPVLL-LLCGLLLLTLAIAVLNTLVPLW-LAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-----GFNRSYYLA   77 (381)
T ss_pred             HHHHHH-HHHHHHHHHHhhhhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHH
Confidence            444444 445555555554 555556655 456899999999999999998766 88899999985     566666667


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++....+..++    ++.++++|++.+++.+...+...+.+.|..++++|+++++++..+..+|..+||.+++.+
T Consensus        78 ~~~~~~~~~~~~~~~~----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         78 SLIFAAGCAGLGLMVG----FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             HHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7777777666655532    567788899999988877666667777888888999999999999999999999999988


Q ss_pred             hccCChhHHHHHHHHHHHHHHHHhh-hcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhh
Q 008185          271 LLKTPPTTMFLVFAVLLSLQLAISF-SAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVA  349 (574)
Q Consensus       271 ~~~~gwr~~f~i~ai~~~~~~~~~~-~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~  349 (574)
                      .+.. ++..+|..+........+.+ ..+|++.+  + +      +  .+       +.++.+++|..+......++...
T Consensus       154 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~------~--~~-------~~~~~~~~~~~~~~~~~~~~~~~  214 (381)
T PRK03633        154 STEL-MSVLPWVTGLVLAAILPLLFTRILNQQAE--N-H------D--ST-------SIWPMLKLRQARLGVNGCIISGI  214 (381)
T ss_pred             cccc-cchHHHHHHHHHHHHHHHHHhcccCCCCC--C-C------C--CC-------CHHHHHHhcchHHHHHHHHHHHH
Confidence            7653 33344444333222222222 22322110  0 0      0  00       11123445554432221111111


Q ss_pred             hcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 008185          350 MVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQF  429 (574)
Q Consensus       350 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~  429 (574)
                      ........++.|..+ .|.++.+.|.......++.+++....+++.||+++|+++..+..+..+..+..  . ..     
T Consensus       215 ~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~--~-~~-----  285 (381)
T PRK03633        215 VLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM--L-SQ-----  285 (381)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH--h-hh-----
Confidence            111111223445544 68998888988888888889999999999999999988776655544432211  1 00     


Q ss_pred             CcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          430 GVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       430 ~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                          ..+. . .....+.+.....|. .....|..|++.++.+.+.++...++|..+||.++|.+.+..|+
T Consensus       286 ----~~~~-~-~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~  350 (381)
T PRK03633        286 ----AAMA-P-ALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD  350 (381)
T ss_pred             ----HHHH-H-HHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence                0000 0 111112222233343 45677888888888888888888999999999999999998764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.90  E-value=7.2e-22  Score=236.96  Aligned_cols=331  Identities=11%  Similarity=0.046  Sum_probs=218.4

Q ss_pred             hHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhH--HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHH
Q 008185          150 STLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICI--GVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGAS  226 (574)
Q Consensus       150 ~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~  226 (574)
                      ...++..+++.+++++ +|++|.++||+     +||+.+..  ...+.+....+.++..+   +++.++++|++++++.+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-----~rk~~~~~~~~~~~~~~~~~~~~~~~~---s~~~l~~~~~l~gi~~a  123 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-----DKAKLAKILKFAEIGIAALAIYGFHLN---SVPLLFAALFLMGIHSA  123 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-----cHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHH
Confidence            4567788888898865 99999999995     45554321  11111122222222222   26778899999999999


Q ss_pred             HHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhcccccccccc
Q 008185          227 ITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQ  306 (574)
Q Consensus       227 ~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~  306 (574)
                      +..+...+++.|++++++|+.++++.+++..+|.++||+++|++.+..||++.|++.++..++.+++.+++||++.....
T Consensus       124 ~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (1140)
T PRK06814        124 LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAPD  203 (1140)
T ss_pred             hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence            98888899999999999999999999999999999999999999999999999965555555444445677776432111


Q ss_pred             cchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHH
Q 008185          307 VSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLS  386 (574)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~li  386 (574)
                      .+. +   ...   .++....++.+.++|.++...+..++.+.....+...++.|..+.+|.++.+.|++.....+|+++
T Consensus       204 ~~~-~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~i  276 (1140)
T PRK06814        204 LKI-D---RNI---IRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAV  276 (1140)
T ss_pred             Cee-c---cch---HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            000 0   011   111122344456777777665544443333333344566677888999999999999999999999


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhh---hc----c---cCcCcceEEeehhHHHHHHHHhhHHHHH
Q 008185          387 LTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQI---NL----Q---FGVPNEVFVLCFAGLAETLAQFKLLPFS  456 (574)
Q Consensus       387 g~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~---~~----~---~~~~~~~~~l~~~~l~~~~~~~~~~p~~  456 (574)
                      |..+.+++.++...++.+..+.++.+++.+...+.....   ..    .   ....+.+.......+....+++...+..
T Consensus       277 g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  356 (1140)
T PRK06814        277 GSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLF  356 (1140)
T ss_pred             HHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHH
Confidence            999999998877666655544444333332111110000   00    0   0001111111222223333344555667


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          457 MLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       457 ~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      +++++.+|++.+|+++|+.+++.+++.++++.++|.+.+
T Consensus       357 ~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        357 AALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999888865

>PRK10133 L-fucose transporter; Provisional

Probab=99.90  E-value=3.3e-21  Score=207.43  Aligned_cols=345  Identities=12%  Similarity=0.016  Sum_probs=218.2

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +.+.+|..++.. +.....| .+++++|+++.+.++..+.+.+++.+ .|+.|+++||+     +||+.+.++.++.+++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-----G~r~~l~~g~~~~~~~  104 (438)
T PRK10133         31 LCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITGLFLYALG  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHH
Confidence            555556666655 4444444 56888999999999999999998876 88999999985     6777777787777777


Q ss_pred             HHHhh--cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc-c-
Q 008185          198 WGPLA--LFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL-K-  273 (574)
Q Consensus       198 ~~~~~--~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~-~-  273 (574)
                      ..++.  ...+   ++..++++|++.++|.+..++....++.|..++++|+..+++......+|+.+||.+++.+.. . 
T Consensus       105 ~~l~~~~~~a~---~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        105 AALFWPAAEIM---NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            76542  1222   267788899999999999999988999988766666667888888888999999999876541 0 


Q ss_pred             ------------------------CChhHHHHHHHHHHHHHHHHh--hhcccccccccccchhcchhhhhhhhHHHHHHH
Q 008185          274 ------------------------TPPTTMFLVFAVLLSLQLAIS--FSAREESLGLAQVSYQNVASKSIAQSIKKQFSD  327 (574)
Q Consensus       274 ------------------------~gwr~~f~i~ai~~~~~~~~~--~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (574)
                                              .+||++|+..+.+..+..++.  ..+||.+...  .++     ++ .   ....+.
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~--~~~-----~~-~---~~~~~~  250 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN--HSD-----AK-Q---GSFSAS  250 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc--ccc-----cc-c---cchhhh
Confidence                                    256666764433333222222  2345532111  000     00 0   011123


Q ss_pred             HHHHHcchhhHHHHHHHHhHhhhcccccccceee-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Q 008185          328 LIATIGEESISYPLTWLVASVAMVPVLSGSMFCY-QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGA  406 (574)
Q Consensus       328 ~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~  406 (574)
                      .++++++|.++...+..++............+.| .++.+|+++.+.|+......++.++|.++.+++.+|+++|+++..
T Consensus       251 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~  330 (438)
T PRK10133        251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA  330 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            3455677776654433333111111111112223 456789999999999999999999999999999999999998777


Q ss_pred             HHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHH
Q 008185          407 VQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIA  485 (574)
Q Consensus       407 ~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~l  485 (574)
                      +.++..+..++ ..+.         +..+ .+ ......+++.....|. .....+..|+ ..+++.++.. +..+|..+
T Consensus       331 ~~~~~~~~~~~-~~~~---------~~~~-~~-~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~  396 (438)
T PRK10133        331 YALIAMALCLI-SAFA---------GGHV-GL-IALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGI  396 (438)
T ss_pred             HHHHHHHHHHH-HHHc---------CChH-HH-HHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhccchH
Confidence            65554433221 1111         1110 01 1112222333334443 4556666655 4677777775 45577888


Q ss_pred             HHHHHHHHHHhhC
Q 008185          486 SGFLGVGLASLTG  498 (574)
Q Consensus       486 g~~i~g~l~~~~g  498 (574)
                      +|.+.|.+.+..|
T Consensus       397 ~~~i~G~l~~~~g  409 (438)
T PRK10133        397 VTPVMGFVSDAAG  409 (438)
T ss_pred             HHHHHHHHHHhcc
Confidence            8888888888765

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.90  E-value=1e-22  Score=221.00  Aligned_cols=365  Identities=12%  Similarity=0.055  Sum_probs=218.5

Q ss_pred             hcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHH
Q 008185          144 NLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSN  222 (574)
Q Consensus       144 ~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~  222 (574)
                      +++.+..+.|++.+.+.+++.+ +++.|+++||+     +||..+.++.++..++..+.......  .+..+++.|++.+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~~~G  142 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-----VFKWSIGIGMFLSSVISIVIPWAAGG--GIALVVFCRVIQG  142 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-----CcchhhHHHHHHHHHHHHHHHHHHHc--CchHHHHHHHHHH
Confidence            6899999999999999999877 78899999995     45556666666655555444322111  1455788899999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc-CChhHHHHHHHHHHHHHHHHhh-hcccc
Q 008185          223 LGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK-TPPTTMFLVFAVLLSLQLAISF-SAREE  300 (574)
Q Consensus       223 ~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~-~gwr~~f~i~ai~~~~~~~~~~-~lpEt  300 (574)
                      ++.+...+....++.|..|+++|++++++...+..+|.++||++++++.+. .|||+.|++.+++.++..++.+ +.+|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       143 LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            998888888888999999999999999999999999999999999999888 4999999999888777666554 45554


Q ss_pred             cccccccchhcchhhhhhhhH------HHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHH
Q 008185          301 SLGLAQVSYQNVASKSIAQSI------KKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIG  374 (574)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g  374 (574)
                      +....+.++++.  +...+..      .+...++++.++++.++...+..+..+.....+...+|.|+.+.+|++..+.|
T Consensus       223 p~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g  300 (465)
T TIGR00894       223 PSIHPCISKFEK--KYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENG  300 (465)
T ss_pred             cccCCCCCHHHH--HHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhH
Confidence            432211111000  0000000      00011244567788777665544443333333334456677788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCch-----hHH--HHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHH
Q 008185          375 MSRVIGQSMLLSLTVFYDRYWKKVPLR-----KLV--GAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETL  447 (574)
Q Consensus       375 l~~i~~~ig~lig~~l~~~l~~r~~~r-----~ll--~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~  447 (574)
                      +......++.+++..+.+++.||..+|     +..  ....+......+..+ .....     ..+.+..+....+..+.
T Consensus       301 ~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~l~~~~  374 (465)
T TIGR00894       301 LLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAY-ALPYL-----SAAFYLTIIILTLANAV  374 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHc-----CCchHHHHHHHHHHHHH
Confidence            887666666666666666666553322     111  111111100011111 11000     00111111111111111


Q ss_pred             HHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHh
Q 008185          448 AQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHN  527 (574)
Q Consensus       448 ~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~  527 (574)
                      .............+..|+ ..|++.|+.+...++|..++|.+.|.+.+..+     .......+.+.++..+++.++...
T Consensus       375 ~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~-----~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       375 SSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDS-----KNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             hhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC-----chHHHHHHHHHHHHHHHHHHHeee
Confidence            111122222334466654 88999999999988888888888776655321     112334445555555555544444


Q ss_pred             cC
Q 008185          528 VP  529 (574)
Q Consensus       528 vp  529 (574)
                      ++
T Consensus       449 ~~  450 (465)
T TIGR00894       449 FG  450 (465)
T ss_pred             ee
Confidence            44

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.90  E-value=3.4e-21  Score=205.32  Aligned_cols=378  Identities=11%  Similarity=0.030  Sum_probs=221.8

Q ss_pred             cccccCCcCCCCCCcccccccccccccccchhHHHHHHHHHHHhhhcc-chhhhhHHHH-HHhcCCChhHHHHHHHHhhh
Q 008185           84 ESKRLGSWAGGGGDEERRRDFGEVGINNFNKQMLVLCGLGYWVQGFRC-FPWLALNFHM-AHNLSLHPSTLQLVQNSGNL  161 (574)
Q Consensus        84 ~~~~~v~w~~~~d~~np~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l-~~~~~~s~~~~~l~~s~~~l  161 (574)
                      .+..|.+|| ||||+    -|.+... .--|+.+. ++..+|..++.. ....++...+ ++++|+|+.+.+++.+++.+
T Consensus         9 ~~~~~~~w~-pe~~~----~w~~~~~-~~a~r~l~-~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l   81 (462)
T PRK15034          9 SRYLLRDWK-PENPA----FWENKGK-HIARRNLW-ISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSV   81 (462)
T ss_pred             CcccccCCC-CCChH----HHhhcCc-hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHH
Confidence            344577787 66555    3333320 00224444 444455556655 4444433344 44799999999999999998


Q ss_pred             hhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008185          162 PMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPV-AAKALPNLMACVLLSNLGASITEVAKDALVAEY  239 (574)
Q Consensus       162 ~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~  239 (574)
                      .+.+ +.+.|++.||+   | .|| ++.++.++..+....++++.+ ...++..+++.|++.+++ +...+.....+.+.
T Consensus        82 ~~al~rip~G~l~Dr~---G-~R~-v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~w  155 (462)
T PRK15034         82 SGALLRVPYSFMVPIF---G-GRR-WTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFF  155 (462)
T ss_pred             HHHHHHHHHHHHHHHh---C-ChH-HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence            8766 67789999996   4 344 455566666666666665411 112367788899998887 44555567778888


Q ss_pred             hcccCccchHHHHHHHHHHHHHHHHHHHHHhh-----c-------------cCChhHHHHHHHHHHHHHHHHhh-hcccc
Q 008185          240 GQKNGIVGLQSYAFMAAASGGILGNLFGGYFL-----L-------------KTPPTTMFLVFAVLLSLQLAISF-SAREE  300 (574)
Q Consensus       240 ~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~-----~-------------~~gwr~~f~i~ai~~~~~~~~~~-~lpEt  300 (574)
                      .++++||.++++.....++|..++++++..++     +             ..+||.++++.+++.++..++.+ ++++.
T Consensus       156 fp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        156 FPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             CCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999999999886555566655544443322     2             23478888777766666555544 44443


Q ss_pred             cccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHH
Q 008185          301 SLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIG  380 (574)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~  380 (574)
                      +..  +            .+    .++.+..+|+|..|...++.+++|.....+...+|+|..+.+.  ...........
T Consensus       236 ~~~--~------------~~----~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~  295 (462)
T PRK15034        236 ASS--R------------AS----IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFG  295 (462)
T ss_pred             ccc--c------------cC----HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHH
Confidence            211  0            01    1233446899999988887777676655555566677666442  22222223334


Q ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHH
Q 008185          381 QSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLA  460 (574)
Q Consensus       381 ~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~  460 (574)
                      .+...+..++.+++.||++.++++.++.++..++.......... .  ...+...+...+..++... ++......-++.
T Consensus       296 ~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~-~--~~~~~~~~~~~~~~l~~~~-G~gngsvfk~ip  371 (462)
T PRK15034        296 PFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPG-T--GSGNFIAFYAVFMGLFLTA-GLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhcc-c--cccHHHHHHHHHHHHHHHh-cccchHHHHhhH
Confidence            45555566788999999999998887776555544322222110 0  0000011111111111111 111112222333


Q ss_pred             hhcCC---------------------ChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          461 RLCPQ---------------------GCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       461 ~~~p~---------------------~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      +++|+                     ++.|.+.|+......+|+.+-|.+.|...+..|
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g  430 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG  430 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC
Confidence            44442                     257888999999999988888888777777665

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.89  E-value=3.3e-21  Score=231.45  Aligned_cols=335  Identities=13%  Similarity=0.018  Sum_probs=218.5

Q ss_pred             HHHHhcCCC--hhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHH
Q 008185          140 HMAHNLSLH--PSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMA  216 (574)
Q Consensus       140 ~l~~~~~~s--~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~  216 (574)
                      ++..+++.+  ....+++.+++.+++++ .|++|+++||+     +||+.++++.++.++...+..+... ..+++.+++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-----grk~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~  108 (1146)
T PRK08633         35 TLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-----SKNRVIRIVKLFEVGLTLLIVLAYY-LGWFWLAFA  108 (1146)
T ss_pred             HHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHH
Confidence            444445654  34468888888888765 88999999985     5666666555443333332222110 012677888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc---------CChhHHHHHHHHHH
Q 008185          217 CVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK---------TPPTTMFLVFAVLL  287 (574)
Q Consensus       217 ~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~---------~gwr~~f~i~ai~~  287 (574)
                      +|++.+++.+...+...+++.|+.++++|+.++++...+..+|.++||++++++.+.         .+|+|.+.+.++..
T Consensus       109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (1146)
T PRK08633        109 VTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAV  188 (1146)
T ss_pred             HHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHH
Confidence            999999999988888889999999999999999999999999999999999998865         24555555544444


Q ss_pred             HHHHHH-hhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehcccc
Q 008185          288 SLQLAI-SFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCL  366 (574)
Q Consensus       288 ~~~~~~-~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  366 (574)
                      ++..++ .+++||++.......++    +. ....++..+.++.++++|.++..++..++.+.........++.|+.+.+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (1146)
T PRK08633        189 AVLGLIFAYRLPKVPAAAPEVFDK----KK-YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVL  263 (1146)
T ss_pred             HHHHHHHHhcCcCCCCCCcccccc----cc-cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            333333 45677765432211000    00 0011112233444567777665554443323333333344566777789


Q ss_pred             CCCch-hHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHH
Q 008185          367 NINPS-VIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAE  445 (574)
Q Consensus       367 g~s~~-~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~  445 (574)
                      |++.. ..|++.....++.+++.++.+++.+|++.++++.++.++.+++.++. .+.         .+.+..++...+..
T Consensus       264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~g  333 (1146)
T PRK08633        264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLL-PTA---------PSLASVLVLFFLFG  333 (1146)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHH-HHh---------hhHHHHHHHHHHHH
Confidence            99998 89999999999999999999999999988877766655544433221 111         11111111122222


Q ss_pred             HHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          446 TLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       446 ~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      +..++...+..+++.+.+|++.+|+++|+.+++.++|..+++.+++.+..
T Consensus       334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22334445566788899999999999999999999999888888776654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6e-23  Score=206.71  Aligned_cols=328  Identities=17%  Similarity=0.151  Sum_probs=238.0

Q ss_pred             hcCCChhHHHHHHHHhhhhh-hhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHH
Q 008185          144 NLSLHPSTLQLVQNSGNLPM-VAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSN  222 (574)
Q Consensus       144 ~~~~s~~~~~l~~s~~~l~~-~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~  222 (574)
                      +.+-+.+++|++++...+.. .+.|+.|++.||+     ++|..+++|..+++.+..++++...    ++.+++.|.+++
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-----Gy~ipm~~Gl~vmf~sTilFafg~s----y~~l~vAR~LQg  170 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-----GYKIPMVAGLFVMFLSTILFAFGNS----YPMLFVARSLQG  170 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-----ccccHHHHHHHHHHHHHHHHHHcch----hHHHHHHHHHhh
Confidence            35567789999999988765 5599999999986     4555566798889999988887754    677899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcc-cCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhc-ccc
Q 008185          223 LGASITEVAKDALVAEYGQK-NGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSA-REE  300 (574)
Q Consensus       223 ~g~~~~~~~~~a~i~d~~~~-~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~~l-pEt  300 (574)
                      +|.+++++...++++|..++ ++|+.+||+.-.+.++|-++||.+||++.+..|.+..|.+++++.++-.++.+++ +.+
T Consensus       171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcc
Confidence            99999999999999999987 6789999999999999999999999999999999999999999998888887654 333


Q ss_pred             cccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHH
Q 008185          301 SLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIG  380 (574)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~  380 (574)
                      +.+...               .++-.++++++++|.++....-+..+..........++.+..+.+.-+.++.|+.++..
T Consensus       251 ~~~~~~---------------~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~  315 (464)
T KOG3764|consen  251 EMDPDS---------------TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPA  315 (464)
T ss_pred             ccCccc---------------cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeeccc
Confidence            322110               01112456778889887665433332222222333445566677776667999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHH
Q 008185          381 QSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLA  460 (574)
Q Consensus       381 ~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~  460 (574)
                      .+..++++.+.+.+.+|++..+.+.....+.++ ++.. ..+.-.+   +....+.......+........++|.+.++.
T Consensus       316 ~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~-G~~~-~~iP~~~---~~~~L~vp~~~l~~~i~~~dasl~P~l~~lv  390 (464)
T KOG3764|consen  316 SLSYAIGTNLFGKLADKYPHLRWLLSLGGLATV-GVSS-GPIPFAT---SIAQLWVPNFGLGFGIGLADASLIPTLGYLV  390 (464)
T ss_pred             ccchhccCchHHHHHHhcCchhHHHHHHHHHHH-HHHh-chhHhhh---hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhc
Confidence            999999999999999999854443322211111 1111 1111000   0111111122233333444567888877777


Q ss_pred             hhcCCC---hhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcc
Q 008185          461 RLCPQG---CEGSLTSFSASALCLSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       461 ~~~p~~---~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~  500 (574)
                      +....+   ..|+++++.....++|.++||.++|.+.+.+|.+
T Consensus       391 d~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~  433 (464)
T KOG3764|consen  391 DPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFE  433 (464)
T ss_pred             chhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHH
Confidence            766666   8899999999999999999999999999998864

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.88  E-value=3.8e-21  Score=202.14  Aligned_cols=330  Identities=15%  Similarity=0.111  Sum_probs=206.6

Q ss_pred             CChhHHHHHHHHhhh--hh---hh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccc----hHHHHHH
Q 008185          147 LHPSTLQLVQNSGNL--PM---VA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAK----ALPNLMA  216 (574)
Q Consensus       147 ~s~~~~~l~~s~~~l--~~---~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~----~~~~l~~  216 (574)
                      .+.++.++..+...+  ++   .+ .|++|+++||+     +||+.+.++.++..++..+.+..++...    ....+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-----GRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLL  101 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-----hhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHH
Confidence            455666655544322  22   23 67899999985     5666677777777777776666653210    0123567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhh--------ccCChhHHHHHHHHHHH
Q 008185          217 CVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFL--------LKTPPTTMFLVFAVLLS  288 (574)
Q Consensus       217 ~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~--------~~~gwr~~f~i~ai~~~  288 (574)
                      .|++++++.+...+...+++.|..++++|+..+++...+..+|.++++.+++.+.        +..+||+.|++.+++.+
T Consensus       102 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  181 (394)
T TIGR00883       102 ARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVL  181 (394)
T ss_pred             HHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHH
Confidence            7999998888777777888999999999999999999999999999998887653        35799999998776655


Q ss_pred             HHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchh--hHHHHHHHHhHhhhcccccccceeehcccc
Q 008185          289 LQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEES--ISYPLTWLVASVAMVPVLSGSMFCYQTQCL  366 (574)
Q Consensus       289 ~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  366 (574)
                      +..+....+||++....+.+++    +...       ++.++.++++.  ++......++............+.|.++.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (394)
T TIGR00883       182 IGLYLRRNLEETPVFEKAQEKH----KKKR-------GPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTL  250 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHhcc----cccc-------CCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444344567765332111000    0000       11122233332  333333332222222222333455666778


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHH
Q 008185          367 NINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAET  446 (574)
Q Consensus       367 g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~  446 (574)
                      |.++.+.+.......++.+++..+.+++.||+++|+.+..+..+..+..+........      ..+.+.......+...
T Consensus       251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~  324 (394)
T TIGR00883       251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD------SGSFTLFFFLVLGLAL  324 (394)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHH
Confidence            9999999988888888889999999999999999987665444333322111111100      0111111111122222


Q ss_pred             HHHhhHHHHHHHHHhhcCCChhHHHHHHHH-HHHHhHHHHHHHHHHHHHHhhC
Q 008185          447 LAQFKLLPFSMLLARLCPQGCEGSLTSFSA-SALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       447 ~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~-~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      ..+....+...++.|..|++.|++++|+.. ....+|..++|.++|.+.+..|
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       325 IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            223334455678899999999999999854 4456788899999999999876

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.88  E-value=1.5e-19  Score=194.83  Aligned_cols=365  Identities=15%  Similarity=0.119  Sum_probs=237.5

Q ss_pred             HHHHHHhhhh-hhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHH
Q 008185          153 QLVQNSGNLP-MVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVA  231 (574)
Q Consensus       153 ~l~~s~~~l~-~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~  231 (574)
                      +...++..+- .++.|+.|.++|+    +.+||+++.+..+++.++...+.+....  ......++.+++..+...+.+.
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~----~~~Rk~~l~~~~~~~~~~~~~l~~v~~~--~~~~~~~l~iia~v~~~~~~vf  146 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADY----GGRRKRFLLIFTLLGVLATALLWFVSPG--QWWLALVLFIIANVGYEASNVF  146 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc----cccchHHHHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555543 3458999999997    4588888888888877777777776433  2344455677788899999999


Q ss_pred             HHHHHHhhhcccCc--------------------------cchHHHHHHHHHHHHHHHHHHHHHhhcc--------CChh
Q 008185          232 KDALVAEYGQKNGI--------------------------VGLQSYAFMAAASGGILGNLFGGYFLLK--------TPPT  277 (574)
Q Consensus       232 ~~a~i~d~~~~~~r--------------------------g~~~s~~~~~~~~G~~igp~igg~l~~~--------~gwr  277 (574)
                      .++++.|+.+++.+                          ++..+..+....+|.++.-++.-.+...        ..-|
T Consensus       147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            99999999988766                          8888888888888988877776554321        2358


Q ss_pred             HHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccc
Q 008185          278 TMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSG  356 (574)
Q Consensus       278 ~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~  356 (574)
                      ..+.+.++..++..+.. +++||++.+...++..    .......++-.+.+++..+.|.+.+.++..++-.-.......
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~----~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~  302 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGS----SYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIIS  302 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcch----hHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888777775 5789886532211100    111122222223333334455555444332220111111222


Q ss_pred             cceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcc
Q 008185          357 SMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLR--KLVGAVQILYASSLLLDLILVRQINLQFGVPNE  434 (574)
Q Consensus       357 ~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r--~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~  434 (574)
                      ....|..+++|++..+.....+...+..++|+++.+++.||++.|  +++..+.++..+..+..+.-.  .....+..+.
T Consensus       303 ~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~--~~~~~g~~~~  380 (477)
T PF11700_consen  303 FAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGF--WPSFFGLKSP  380 (477)
T ss_pred             HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHh--hhcccCcccH
Confidence            223467788999999999999999999999999999999999999  777766655544333222100  0111122222


Q ss_pred             eEEeehhHHHH-HHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHH
Q 008185          435 VFVLCFAGLAE-TLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVI  513 (574)
Q Consensus       435 ~~~l~~~~l~~-~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li  513 (574)
                      +-......+.+ +.+..+ ...-++.+++.|++++++.||+++...+.++.+||++.|.+.+..|-       ....++.
T Consensus       381 ~~f~~~a~~~G~~~G~~q-s~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~-------~r~g~~~  452 (477)
T PF11700_consen  381 WEFWVLAVLIGLFMGGIQ-SASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS-------QRYGFLF  452 (477)
T ss_pred             HHHHHHHHHHHHHhhhHH-HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------chhHHHH
Confidence            21111111111 111111 11246789999999999999999999999999999999999998762       2344555


Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHH
Q 008185          514 QFLAALLPLIWIHNVPMSETIIEK  537 (574)
Q Consensus       514 ~~~~~ll~l~~~~~vp~~~~~~~~  537 (574)
                      ..++.+++++++.+++++|++.+.
T Consensus       453 l~~lf~~gl~ll~~v~~~~g~~~A  476 (477)
T PF11700_consen  453 LLVLFLIGLILLFFVDVEKGREDA  476 (477)
T ss_pred             HHHHHHHHHHHHhhccchhhhhcc
Confidence            555666777788888887765543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.87  E-value=4.1e-21  Score=200.97  Aligned_cols=331  Identities=9%  Similarity=-0.024  Sum_probs=203.8

Q ss_pred             hhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHH
Q 008185          135 LALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPN  213 (574)
Q Consensus       135 ~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~  213 (574)
                      +..+.++++++|+|+.+.+++.+++.+++.+ .|++|+++||+     +||+.+.++.++..++..++++.+.+   ++.
T Consensus        22 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~i~~~~~~~~~~~---~~~   93 (366)
T TIGR00886        22 PLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-----GPRYTTTLSLLLLAIPCLWAGLAVQS---YSV   93 (366)
T ss_pred             HhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHhhh---HHH
Confidence            3344358888999999999999999998766 78899999985     56666777877777777766665412   566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc----------cCChhHHHHH-
Q 008185          214 LMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL----------KTPPTTMFLV-  282 (574)
Q Consensus       214 l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~----------~~gwr~~f~i-  282 (574)
                      +++.|++.+++.+.. ....+++.|..++++|+.++++......+|..+|+.+++.+..          ..+|||.|++ 
T Consensus        94 ~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~  172 (366)
T TIGR00886        94 LLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIV  172 (366)
T ss_pred             HHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHH
Confidence            778899888776544 4457889999999999999998887777777777777766553          3489999944 


Q ss_pred             HHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceee
Q 008185          283 FAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCY  361 (574)
Q Consensus       283 ~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~  361 (574)
                      .+++..+..++. ++.+|++....+.++.+.++.. ....++..++.++.+++|.++...+..++.+..........+.|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (366)
T TIGR00886       173 PAGILLLPALLIFFVGADTPPGKPATGKLSFKGAR-WSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMF  251 (366)
T ss_pred             HHHHHHHHHHHHHHhcccCCcccccchhccccccc-ccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            455554444443 4566654322111100000000 00001111234456777777665554443233222333445567


Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      ..+.+|+++.+.++......++.+++..+.+++.+|+++|+....+.++...+.... .+....+     .+........
T Consensus       252 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~  325 (366)
T TIGR00886       252 FKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLV-VLGLVSP-----LSLAVFIVLF  325 (366)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHH-HhcCCCc-----chHHHHHHHH
Confidence            778899999999988777777888888888999999998877665544433322211 1110000     0111001111


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhH
Q 008185          442 GLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLS  482 (574)
Q Consensus       442 ~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg  482 (574)
                      .+.....+....+...+..+..| +.+|+++|+.+++.++|
T Consensus       326 ~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       326 VALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            11111112222233445566666 68999999999888775

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.87  E-value=1.9e-20  Score=198.91  Aligned_cols=355  Identities=12%  Similarity=0.077  Sum_probs=206.4

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +...+++..... ...+.++.++++++|.++.+.+++.+++.+...+ +|++|+++||+     +||+.++.+....++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         7 FGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-----GLKKHLLWIISGLLVL   81 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHH
Confidence            334444444432 4445556688888999999999999999998765 89999999995     3444444333332222


Q ss_pred             HHH---hhcccCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008185          198 WGP---LALFPVA-AKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK  273 (574)
Q Consensus       198 ~~~---~~~~~~~-~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~  273 (574)
                      ...   ....+.. ......+++.+++.+++.+.......++..|..+  +++..++......++|.++||.++|.+.+ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-  158 (396)
T TIGR00882        82 FAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-  158 (396)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-
Confidence            221   1111100 0011222344555556555555555566666533  23445566677778999999999998765 


Q ss_pred             CChhHHHHHHHHHHHHHHHHhhh-cccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcc
Q 008185          274 TPPTTMFLVFAVLLSLQLAISFS-AREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVP  352 (574)
Q Consensus       274 ~gwr~~f~i~ai~~~~~~~~~~~-lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~  352 (574)
                      .+||+.|++.+++.++..++.++ .||++.+....++ ..+ +..    ++..++.++.+++|.++...++.+.......
T Consensus       159 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~----~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  232 (396)
T TIGR00882       159 IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANA-LGA-NAS----AFSLKLALELFRQRKFWMFVLYVVGVACVYD  232 (396)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcc-ccc-ccC----CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            59999999998888776655544 4443221110000 000 000    1112344566788887665544433221111


Q ss_pred             cccccceeehcccc---CCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 008185          353 VLSGSMFCYQTQCL---NINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQF  429 (574)
Q Consensus       353 ~~~~~~~~~~~~~~---g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~  429 (574)
                      .....++.|..+.+   +.+....|.......+...++....+++.||+++|+++.++.++.++.... ....       
T Consensus       233 ~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~-~~~~-------  304 (396)
T TIGR00882       233 VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIG-SSFA-------  304 (396)
T ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-HHhc-------
Confidence            12222333444433   555667788777777777778888899999999999887776655543221 1111       


Q ss_pred             CcCcceEEeehhHHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHH-HHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          430 GVPNEVFVLCFAGLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSF-SASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       430 ~~~~~~~~l~~~~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl-~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                        .+.+.... ..+..+.+. ........+..+..|++.+++.++. ++...++|+.+++.++|.+.+..|+
T Consensus       305 --~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~  373 (396)
T TIGR00882       305 --TTALEVVI-LKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGF  373 (396)
T ss_pred             --CChHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence              11111111 111112221 1111122345667788888887776 6788899999999999999998774

>TIGR00889 2A0110 nucleoside transporter

Probab=99.87  E-value=5.1e-20  Score=197.11  Aligned_cols=334  Identities=11%  Similarity=-0.005  Sum_probs=199.4

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccch
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKA  210 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~  210 (574)
                      +..+++..++++++|++.+++|++.+++.++..+ +|++|.++||+   | |||+.+.++.+...++..+..+.. +   
T Consensus        20 ~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~---g-~~r~~~~~~~~~~~~~~~~~~~~~-~---   91 (418)
T TIGR00889        20 SWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW---L-SAQKVYAVCHFAGALLLFFAAQVT-T---   91 (418)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-ccHHHHHHHHHHHHHHHHHHHHhc-C---
Confidence            4556666788888999999999999999988765 88999999985   3 566676666666655555544442 2   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----H----hhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 008185          211 LPNLMACVLLSNLGASITEVAKDALV----A----EYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLV  282 (574)
Q Consensus       211 ~~~l~~~~~l~~~g~~~~~~~~~a~i----~----d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i  282 (574)
                      +..+++.|++.+++.+......+++.    .    |..+...|.+.++      .+|.++||.++|.+....+|+ .|++
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~  164 (418)
T TIGR00889        92 PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYI  164 (418)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHH
Confidence            45556677766655443333333332    2    3222233444444      468888898988774333354 4666


Q ss_pred             HHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHH-HHHHHHHcchhhHHHHHHHHhHhhhcccccccceee
Q 008185          283 FAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQF-SDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCY  361 (574)
Q Consensus       283 ~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~  361 (574)
                      .++..++..+..+++||++....+++      .+    .++.. ......+++|.++...+..++...........++.+
T Consensus       165 ~~~~~~~~~~~~~~~~e~~~~~~~~~------~~----~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (418)
T TIGR00889       165 TAGSSALLGVFALTLPDIPVAKSTAK------MS----IKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGF  234 (418)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCccccc------cC----HHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHH
Confidence            66666655555567888743211100      00    11111 122345788877655544443211111111111222


Q ss_pred             hccccCCC--------chhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCc
Q 008185          362 QTQCLNIN--------PSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPN  433 (574)
Q Consensus       362 ~~~~~g~s--------~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~  433 (574)
                      .. ..|.+        ....|+......++.+++....+++.||+++|+++..+.++..+...... ....      ...
T Consensus       235 ~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~-~~~~------~~~  306 (418)
T TIGR00889       235 LH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFA-YGDP------EYF  306 (418)
T ss_pred             HH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HcCc------chh
Confidence            32 34433        35668888888888888889999999999999998888776655432211 1000      000


Q ss_pred             ceEEeehhHHHHHHHHhhHHH-HHHHHHhhcCCChhHHHHHHHH-HHHHhHHHHHHHHHHHHHHhhC
Q 008185          434 EVFVLCFAGLAETLAQFKLLP-FSMLLARLCPQGCEGSLTSFSA-SALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       434 ~~~~l~~~~l~~~~~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~-~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      .+..+....+..+++.....+ ...+++|..|++.+|+++|+.+ ....+|..+||.++|.+.+..|
T Consensus       307 ~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g  373 (418)
T TIGR00889       307 GYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF  373 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            011111111222222222223 3567889999999999999997 5678999999999999999876

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=6.9e-20  Score=194.60  Aligned_cols=383  Identities=19%  Similarity=0.137  Sum_probs=248.2

Q ss_pred             HhcC--CChhHHHH----HHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          143 HNLS--LHPSTLQL----VQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       143 ~~~~--~s~~~~~l----~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      +.+|  ++..+..+    ..+++.++.++ ..+.|+++|++     +||..+.+..++..++..+..+.. ....+..++
T Consensus        47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~-----GRK~~l~~~~~l~~~~~~~~~~s~-~~~~~e~li  120 (485)
T KOG0569|consen   47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF-----GRKNALLLSNLLAVLAALLMGLSK-SAPSFEMLI  120 (485)
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cchHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHH
Confidence            3455  45555444    45556666666 45689999984     677766666665555444333332 122367788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHH--hhccCChhHHHHHHHHHHHHHHHH
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGY--FLLKTPPTTMFLVFAVLLSLQLAI  293 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~--l~~~~gwr~~f~i~ai~~~~~~~~  293 (574)
                      +.|++.|+..+.......-++.|.+|++.||.+-.+...+..+|.++|..+|.-  +-....|++.+.+.++..++.+++
T Consensus       121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~  200 (485)
T KOG0569|consen  121 LGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL  200 (485)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH
Confidence            999999999999988889999999999999998888888888888888666542  223456999999998888888887


Q ss_pred             hhhcccccccccc-cchhcchhh------------hhhhh----HH-H-----HHHHHHHHHcchhhHHHHHHHHhHhhh
Q 008185          294 SFSAREESLGLAQ-VSYQNVASK------------SIAQS----IK-K-----QFSDLIATIGEESISYPLTWLVASVAM  350 (574)
Q Consensus       294 ~~~lpEt~~~~~~-~~~~~~~~~------------~~~~~----~~-~-----~~~~~~~~~~~~~v~~~~l~~~l~~~~  350 (574)
                      ..++||+|+.... +.+++.+++            ...+.    .+ +     .-..+++++++|...++....+. ...
T Consensus       201 l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~-v~~  279 (485)
T KOG0569|consen  201 LPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIV-VSF  279 (485)
T ss_pred             HhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHH-HHH
Confidence            8899999987643 221111100            00000    00 0     11135567788777665433322 122


Q ss_pred             cccccc--cceeehc---cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhh
Q 008185          351 VPVLSG--SMFCYQT---QCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQI  425 (574)
Q Consensus       351 ~~~~~~--~~~~~~~---~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~  425 (574)
                      .+++.+  +..+|.+   ...|++..+.-++..+.++..++.+.+...+.+|.|||++++.+..++.+..++......-.
T Consensus       280 ~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~  359 (485)
T KOG0569|consen  280 AQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLS  359 (485)
T ss_pred             HHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222  2233333   34789998888888888888999999999999999999999988877766655433222111


Q ss_pred             hcccCcCcceE-EeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCC
Q 008185          426 NLQFGVPNEVF-VLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGD  503 (574)
Q Consensus       426 ~~~~~~~~~~~-~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~  503 (574)
                      + ..+ +...+ .+....++....++...|. .-+.+|++|++.|.++++...++..++..+-......+.+.+|.    
T Consensus       360 ~-~~~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~----  433 (485)
T KOG0569|consen  360 N-SFG-SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP----  433 (485)
T ss_pred             H-Hhh-hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            1 010 10111 1222222333334444555 35678999999999999999999999988877777777777762    


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Q 008185          504 YSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKGRKRG  542 (574)
Q Consensus       504 ~~~l~~~~li~~~~~ll~l~~~~~vp~~~~~~~~~~~~~  542 (574)
                          +.++++.....+..+..++.+||||+++-+|..+.
T Consensus       434 ----~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~  468 (485)
T KOG0569|consen  434 ----YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEE  468 (485)
T ss_pred             ----hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH
Confidence                33444444444455556789999999886655444

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.87  E-value=8.8e-20  Score=200.94  Aligned_cols=415  Identities=16%  Similarity=0.078  Sum_probs=253.2

Q ss_pred             ccccccCCcCCCCCCcccccccccccccccchhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhh
Q 008185           83 KESKRLGSWAGGGGDEERRRDFGEVGINNFNKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNL  161 (574)
Q Consensus        83 ~~~~~~v~w~~~~d~~np~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l  161 (574)
                      .+++..+.|+.++||++|. +|....    |+......+...+.....+ ......+   .+.++.+.....+..+++.+
T Consensus        58 ~~~~c~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~c~~~~~~~~~~s~~~~  129 (521)
T KOG0255|consen   58 AEDSCLVYWDPTLDPANPL-NWPSWK----KWLLVIVICLDGWVYDYGSSVYSIVSE---WNLVCDSSTLVALGQSLFFL  129 (521)
T ss_pred             CcccceecccCccCcCCcc-cccccc----ccccccccccceeEecCCCCcccccch---hceeeCcHhHHHHHHHHHHH
Confidence            4445556777888999998 555444    5554443444433333333 2222222   34577888999999999999


Q ss_pred             hhhhhh-hheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008185          162 PMVAKP-LYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYG  240 (574)
Q Consensus       162 ~~~~~p-l~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~  240 (574)
                      +..++| ++|++||++     +||+.++++.++.+++.++.+++++    ++.++++|++.+++.+.......+++.|+.
T Consensus       130 G~~vG~~i~g~lsD~~-----GRk~~~~~~~~~~~i~~~~~a~a~~----~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~  200 (521)
T KOG0255|consen  130 GVLVGSLIFGPLSDRF-----GRKPVLLVSLLLFIIFGILTAFAPN----YWMFLIFRFLSGFFGSGPLTVGFGLVAEIV  200 (521)
T ss_pred             HHHHHHhhheehHhhc-----ccHHHHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHHHhhccchhHHhHhhheeec
Confidence            999988 589999984     6888888888888888877777754    788899999999999888888889999999


Q ss_pred             cccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcch-----h-
Q 008185          241 QKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVA-----S-  314 (574)
Q Consensus       241 ~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~-----~-  314 (574)
                      .+++|+.++++ ......|+.++|..++++..  +|||.+|+..+..++.++..++.||++++...+++.+.+     + 
T Consensus       201 ~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~  277 (521)
T KOG0255|consen  201 SPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKI  277 (521)
T ss_pred             CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHH
Confidence            99999999998 77888999999999999987  899999999998887777766677998876532221110     0 


Q ss_pred             -------hhhhhhHHHH--HH-----------HHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHH
Q 008185          315 -------KSIAQSIKKQ--FS-----------DLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIG  374 (574)
Q Consensus       315 -------~~~~~~~~~~--~~-----------~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g  374 (574)
                             ....+..+..  .+           .+..+++.|.+....++..+.+...-....... +....+|-+   ..
T Consensus       278 a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~-~~~~~lg~~---~~  353 (521)
T KOG0255|consen  278 AKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLS-LNVSGLGGN---IY  353 (521)
T ss_pred             HhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhh-hhhhhcCch---HH
Confidence                   0000001110  00           122334444333333333332211100000000 111223322   22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHH
Q 008185          375 MSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLP  454 (574)
Q Consensus       375 l~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p  454 (574)
                      +.....+.....+....+...++.+||.....+..+..++.+...+.....       ..+.......+..+..+..+..
T Consensus       354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  426 (521)
T KOG0255|consen  354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL-------GGWLHWILPLLGKFFIGSAFNL  426 (521)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc-------hhHHHHHHHHHHHHHHHHHHHH
Confidence            223333334445555556777888888877777666555544332221110       0001111122222222333444


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 008185          455 FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETI  534 (574)
Q Consensus       455 ~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp~~~~~  534 (574)
                      ...+.+|+.|...|+.+.+..+....+|..++|.+....... .      ..+... ++..+..+.+++...++||+++.
T Consensus       427 ~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~-~------~~~~~~-~~~~~~~l~~~~~~~~lpet~~~  498 (521)
T KOG0255|consen  427 IFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM-F------PLLGLI-LFGWLALLLGLLSLLLLPETKGK  498 (521)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c------ccchHH-HHHHHHHHHHHHHHhcCcccCCC
Confidence            456788999999999999999999999999998876544331 1      111222 22333333444445889999885


Q ss_pred             HH
Q 008185          535 IE  536 (574)
Q Consensus       535 ~~  536 (574)
                      .+
T Consensus       499 ~l  500 (521)
T KOG0255|consen  499 PL  500 (521)
T ss_pred             CC
Confidence            54

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2e-22  Score=207.28  Aligned_cols=369  Identities=17%  Similarity=0.131  Sum_probs=233.6

Q ss_pred             hhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHH
Q 008185          114 KQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGV  191 (574)
Q Consensus       114 ~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~  191 (574)
                      +...+++++..+...++- ...... .-+++.||+++...|++.+.+.+.+. +.|++|.|+||     |.||.++.+|.
T Consensus        32 ~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-----yNR~~v~~vG~  105 (493)
T KOG1330|consen   32 TLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-----YNRKRVIAVGI  105 (493)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-----cCcceEEeeHH
Confidence            334444666677777764 333333 35788899999999999999998875 49999999998     58999999999


Q ss_pred             HHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhh
Q 008185          192 FLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFL  271 (574)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~  271 (574)
                      .+..++.++.++..    .+++++++|.+.++|-+...+..+++++|.++.++|++++++++.+..+|..+|-+.|+.+.
T Consensus       106 ~iW~~Av~~~~fs~----~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va  181 (493)
T KOG1330|consen  106 FIWTLAVFASGFSN----HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVA  181 (493)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeec
Confidence            99888888777763    27889999999999999999999999999999999999999999999999999999999888


Q ss_pred             ccCC-hhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHH-HHHhHh
Q 008185          272 LKTP-PTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLT-WLVASV  348 (574)
Q Consensus       272 ~~~g-wr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l-~~~l~~  348 (574)
                      ...+ |||.|++.+++++++.++. ++++|+++....+  .+...+. ..+....+++++.+.++|.+....+ +... .
T Consensus       182 ~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~--~~~~~~~-~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~-~  257 (493)
T KOG1330|consen  182 SLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE--VDGENKM-VKPFTSVWKDLKVLAKIKVFVLSSLGIIAA-Q  257 (493)
T ss_pred             cCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc--cccCCcC-CCCccchHHHHHHHHccCceeeehHHHHHH-H
Confidence            7666 9999999999999988885 5788866432211  0000000 0112233456666566554432222 2222 1


Q ss_pred             hhcccccc---cceeehccccCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh---HH
Q 008185          349 AMVPVLSG---SMFCYQTQCLNINP----SVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLL---LD  418 (574)
Q Consensus       349 ~~~~~~~~---~~~~~~~~~~g~s~----~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l---~~  418 (574)
                      +....+..   .+.++..+..|++.    ...|+.-..+.+|.+.|+.+.+++.+.++.........+..+....   ..
T Consensus       258 fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~  337 (493)
T KOG1330|consen  258 FVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPF  337 (493)
T ss_pred             HhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHH
Confidence            11111111   11122223344432    2334446667788889999999887755442222233322222211   11


Q ss_pred             HHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHh-HHHHHHHHHHHHHHhh
Q 008185          419 LILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCL-SSIASGFLGVGLASLT  497 (574)
Q Consensus       419 l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~l-g~~lg~~i~g~l~~~~  497 (574)
                      +.+.....    ....++.+....+...+.....-+..-+..++.|++.|.+++++...+.-+ |.+-+|.+.|++.+.+
T Consensus       338 L~~~~~~~----~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  338 LFLFPAFT----SSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             HHHHHhhh----hHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            11111100    001111111111111111111111123456788999999999999988764 5556676888888854


Q ss_pred             -Ccc
Q 008185          498 -GIT  500 (574)
Q Consensus       498 -g~~  500 (574)
                       |+.
T Consensus       414 ~g~~  417 (493)
T KOG1330|consen  414 RGYK  417 (493)
T ss_pred             hCCC
Confidence             554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.85  E-value=5.8e-19  Score=193.94  Aligned_cols=374  Identities=15%  Similarity=0.063  Sum_probs=224.8

Q ss_pred             HHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHH
Q 008185          151 TLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITE  229 (574)
Q Consensus       151 ~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~  229 (574)
                      +.+++.+...++..+ .++.|+++|++     +||..++++.++..+.+++.+++.+    ..+++++|++.++|.+...
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-----GRk~~l~~~~~~~~iG~ii~~~a~~----~~~l~~GR~l~G~g~G~~~  160 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-----GRKKTLLLAVVLFLIGAIIIALAPS----WYQLIVGRILTGLGVGGAS  160 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHhccchhhhh
Confidence            458888888887655 78899999985     6888888888888999988888763    6788999999999999998


Q ss_pred             HHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHHHHhhhccccccccccc
Q 008185          230 VAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK--TPPTTMFLVFAVLLSLQLAISFSAREESLGLAQV  307 (574)
Q Consensus       230 ~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~--~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~  307 (574)
                      ...+.+++|+.|++.||...+..+....+|..+|.+++ ...++  .+||..+++.++.+++..+..+++||++++..+.
T Consensus       161 ~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~-~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~  239 (513)
T KOG0254|consen  161 VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN-YGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEK  239 (513)
T ss_pred             hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh-hhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHc
Confidence            88999999999999999999999999999999995554 44444  4899999999888887777767899999876543


Q ss_pred             chhcch--------h---hh---hhhhHH-HHHHH--------HHHHHcchhhHHHHHHHHhHhhhcccc--cccceeeh
Q 008185          308 SYQNVA--------S---KS---IAQSIK-KQFSD--------LIATIGEESISYPLTWLVASVAMVPVL--SGSMFCYQ  362 (574)
Q Consensus       308 ~~~~~~--------~---~~---~~~~~~-~~~~~--------~~~~~~~~~v~~~~l~~~l~~~~~~~~--~~~~~~~~  362 (574)
                      .+...+        .   .+   ..+..+ +...+        .+.-+..|...+....... ....+++  .....+|.
T Consensus       240 g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~-l~~fqq~tG~~~~~~Y~  318 (513)
T KOG0254|consen  240 GRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLL-LQLFQQLTGINYVFYYS  318 (513)
T ss_pred             CChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHH-HHHHHHHhCCceEEeeh
Confidence            211110        0   00   000011 00000        0111222334333322211 1111111  11222333


Q ss_pred             c---cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccC-cC--cceE
Q 008185          363 T---QCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFG-VP--NEVF  436 (574)
Q Consensus       363 ~---~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~-~~--~~~~  436 (574)
                      .   +..|++... ....+..++..++++.+...+.||.++|++++.+...+.++.++.. .......... ..  ..++
T Consensus       319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~  396 (513)
T KOG0254|consen  319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILA-VVGVFALYYPNSSKGAGWL  396 (513)
T ss_pred             HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH-HHHHHhccCCCcccchhHH
Confidence            2   234544322 2233333344444444456677888999999988877766655332 2211110000 00  1111


Q ss_pred             EeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHH
Q 008185          437 VLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQF  515 (574)
Q Consensus       437 ~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~  515 (574)
                      .+....++.........|. +.+.+|+.|.+.|+++.++...+..+...+-....-.+.+..+     .  ...+..+.+
T Consensus       397 ~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-----~--~~~f~~f~~  469 (513)
T KOG0254|consen  397 AIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-----I--GGTFGYFGG  469 (513)
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c--cchHHHHHH
Confidence            2222222222222333333 3567999999999999999888887766443333323333222     0  122333444


Q ss_pred             HHHHHHH-HHHHhcCCCHHHHHHHHhcCCC
Q 008185          516 LAALLPL-IWIHNVPMSETIIEKGRKRGLS  544 (574)
Q Consensus       516 ~~~ll~l-~~~~~vp~~~~~~~~~~~~~~~  544 (574)
                      +..+..+ +.++++|||+++++||.++...
T Consensus       470 ~~~~~~~~fv~~~~pETkg~sleei~~~~~  499 (513)
T KOG0254|consen  470 ICLLSLIIFVFFFVPETKGLTLEEINELFE  499 (513)
T ss_pred             HHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence            4444444 4578999999999998876543

>TIGR00896 CynX cyanate transporter

Probab=99.85  E-value=1.2e-19  Score=189.67  Aligned_cols=320  Identities=14%  Similarity=0.057  Sum_probs=205.9

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACV  218 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (574)
                      .+++++|++.++.++..+++.+++.+ .|+.|+++||+     +||+.+.++.+...++.... .. ++   ...+++.|
T Consensus        25 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~-~~-~~---~~~l~~~~   94 (355)
T TIGR00896        25 QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-----GEERSVAAGLLLIAAGILIR-SA-PG---TALLFAGT   94 (355)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----CchHHHHHHHHHHHHHHHHH-Hh-cc---HHHHHHHH
Confidence            56778999999999999999998866 78899999985     46666666666655555443 32 22   45667889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccC--ChhHHHHHHHHHHHHHHHHhhh
Q 008185          219 LLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKT--PPTTMFLVFAVLLSLQLAISFS  296 (574)
Q Consensus       219 ~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~--gwr~~f~i~ai~~~~~~~~~~~  296 (574)
                      ++.++|.+.........+.|..+ ++|++++++.+.+..+|..+|+.+++.+.+..  +||+.|.+.++..++..  ..+
T Consensus        95 ~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~  171 (355)
T TIGR00896        95 ALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--LAW  171 (355)
T ss_pred             HHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHH
Confidence            99888888776666667777765 68999999999999999999999999887654  39999987765443322  233


Q ss_pred             cccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHH
Q 008185          297 AREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMS  376 (574)
Q Consensus       297 lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~  376 (574)
                      +||.+....+..      ....       ...++.+++|.++...+..++...........++.|.++ +|+++.+.|..
T Consensus       172 ~~~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~  237 (355)
T TIGR00896       172 IPQVRRRVAANQ------TTTR-------LTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSL  237 (355)
T ss_pred             hhhhccccCCCC------CCCC-------CCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence            454332111000      0000       012234566766655443333222222222334445554 79999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH
Q 008185          377 RVIGQSMLLSLTVFYDRYWKKVP-LRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF  455 (574)
Q Consensus       377 ~i~~~ig~lig~~l~~~l~~r~~-~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~  455 (574)
                      .....++.+++..+.+++.||++ +|+.+..+.++.+++.+. +.....        +... . ...+. +++.....|.
T Consensus       238 ~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~-~-~~~l~-g~~~g~~~~~  305 (355)
T TIGR00896       238 LALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCG-LLFAPM--------HGLW-A-WALVL-GLGQGGAFPL  305 (355)
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH-HHHhhh--------hHHH-H-HHHHH-HHhhhhHhHH
Confidence            88899999999999999999995 444444444444333221 111110        0000 0 11111 2222233333


Q ss_pred             -HHHHHhhc-CCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          456 -SMLLARLC-PQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       456 -~~l~~~~~-p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                       .....+.. +++.+|+.+++.+++.+++..++|.+.|.+.+..|
T Consensus       306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             33344333 45677999999999999999999999999999876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.84  E-value=5.6e-18  Score=181.87  Aligned_cols=388  Identities=17%  Similarity=0.130  Sum_probs=219.5

Q ss_pred             hhhHHHHHHhcCCChhHHHHHHHHhhhh-hhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCcc-----
Q 008185          135 LALNFHMAHNLSLHPSTLQLVQNSGNLP-MVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAA-----  208 (574)
Q Consensus       135 ~~~~~~l~~~~~~s~~~~~l~~s~~~l~-~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~-----  208 (574)
                      ..+++++ +++|++....+++..+..+. ...+|++|.+|||...+.+|||++++.+.+..++++.++.+..+..     
T Consensus        25 ~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~  103 (477)
T TIGR01301        25 SLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGD  103 (477)
T ss_pred             HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccc
Confidence            3344455 45999999999998888765 4569999999997555445888888777777777777666543210     


Q ss_pred             ------ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCc--cchHHHHHHHHHHHHHHHHHHHHHh--hcc---
Q 008185          209 ------KA--LPNLMACVLLSNLGASITEVAKDALVAEYGQKNGI--VGLQSYAFMAAASGGILGNLFGGYF--LLK---  273 (574)
Q Consensus       209 ------~~--~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~r--g~~~s~~~~~~~~G~~igp~igg~l--~~~---  273 (574)
                            ..  ....++...+..++......+..++++|+.++++|  +.+.++......+|.++|+.+|++.  .+.   
T Consensus       104 ~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~  183 (477)
T TIGR01301       104 NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPF  183 (477)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence                  00  01122223334456666666778999999998654  5678888888899999999999875  211   


Q ss_pred             ----------CChhHHHHHHHHHHHHHHHHh-hhcccccccccccch-hcchhhhhhhhHHHHHHHHHHHHc--chhhHH
Q 008185          274 ----------TPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSY-QNVASKSIAQSIKKQFSDLIATIG--EESISY  339 (574)
Q Consensus       274 ----------~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~  339 (574)
                                .+.|+.|++.+++.++..++. +++||++....+... ++.++.+ ....+..++++++.++  -|..++
T Consensus       184 ~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~mP~~m~~  262 (477)
T TIGR01301       184 TKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPS-KHGEEAFFGELFGAFKYLPRPVWI  262 (477)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhccccc-ccchhhhHHHHHHHHHHCCHHHHH
Confidence                      157899999888777777664 679997542211100 0000000 0001112223222222  244555


Q ss_pred             HHHHHHhHhhhcccccccc-eeehccccCCCch------h---HHH-HHHHHHHHHHHHHHHHHHHHhcCCch-hHHHHH
Q 008185          340 PLTWLVASVAMVPVLSGSM-FCYQTQCLNINPS------V---IGM-SRVIGQSMLLSLTVFYDRYWKKVPLR-KLVGAV  407 (574)
Q Consensus       340 ~~l~~~l~~~~~~~~~~~~-~~~~~~~~g~s~~------~---~gl-~~i~~~ig~lig~~l~~~l~~r~~~r-~ll~~~  407 (574)
                      +++..+++|.....+.... .++-.++|+-++.      +   .|. ..+...+.+.+..++..++.|+++.| +....+
T Consensus       263 l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s  342 (477)
T TIGR01301       263 LLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIV  342 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            5555565554322111100 1112234443221      1   122 24444555556667788899999864 444555


Q ss_pred             HHHHHHHHhHHHHhhhhhhc---c------cCcCcc---eEEeeh-hHHHHHHHHhhHHHHHHHHHhhcCC--ChhHHHH
Q 008185          408 QILYASSLLLDLILVRQINL---Q------FGVPNE---VFVLCF-AGLAETLAQFKLLPFSMLLARLCPQ--GCEGSLT  472 (574)
Q Consensus       408 ~ll~~~~~l~~l~l~~~~~~---~------~~~~~~---~~~l~~-~~l~~~~~~~~~~p~~~l~~~~~p~--~~~gt~~  472 (574)
                      .++.+++.... .+......   .      ...++.   +..++. ..+....+....+|+ +++++..++  +..|..+
T Consensus       343 ~~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPf-al~s~~~~~~~~~~G~~m  420 (477)
T TIGR01301       343 NIILAICLAAT-VLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPF-ALASIRSSNLGAGQGLSM  420 (477)
T ss_pred             HHHHHHHHHHH-HHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhH-HHHHHHccccCCCCcchh
Confidence            55554443332 22221000   0      000110   111111 111111223455665 455666664  5569999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHH-HHHhcCCCH
Q 008185          473 SFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLI-WIHNVPMSE  532 (574)
Q Consensus       473 gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~-~~~~vp~~~  532 (574)
                      |+.|++..+.+.+.++..|.+.+.+|-+     + ...+.++++..+++.+ .++.+|+.+
T Consensus       421 gilN~~I~lpQii~sl~~g~~~~~~g~~-----~-~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       421 GVLNLAIVIPQIIVSLGSGPWDQLFGGG-----N-LPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcCCC-----C-eeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999998888877777732     1 2345555555555444 467888764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.84  E-value=2.4e-18  Score=187.05  Aligned_cols=366  Identities=13%  Similarity=0.052  Sum_probs=211.0

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHh--cCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHN--LSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQI  195 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~--~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~  195 (574)
                      +.+..++..+.. .....++.|++++  +|.+..+++++.+.+.+...+ .++.|+++||+    .+||+.+.++.++..
T Consensus        15 l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~----~G~~~~l~~~~~~~~   90 (475)
T TIGR00924        15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRV----WGTKKTMVLGGIVLM   90 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhh----cchHHHHHHHHHHHH
Confidence            344445544443 3444456677877  999999999999999887655 66789999982    257777777888878


Q ss_pred             HHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC---ccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008185          196 LSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNG---IVGLQSYAFMAAASGGILGNLFGGYFLL  272 (574)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~---rg~~~s~~~~~~~~G~~igp~igg~l~~  272 (574)
                      ++..+++..++    ...+++.+++.++|.+...+...++++|..++++   |+.+.++.+.+.++|.++||.+++++.+
T Consensus        91 ~g~~~~~~~~~----~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~  166 (475)
T TIGR00924        91 LGHFMLAMSIY----PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE  166 (475)
T ss_pred             HHHHHHHhccc----HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766542    3445667878788877766677788999987643   8888999999999999999999999998


Q ss_pred             cCChhHHHHHHHHHHHHHHHHhhhcccccccc----cccchhcchh-hhhh-------hhHHH-----------------
Q 008185          273 KTPPTTMFLVFAVLLSLQLAISFSAREESLGL----AQVSYQNVAS-KSIA-------QSIKK-----------------  323 (574)
Q Consensus       273 ~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~----~~~~~~~~~~-~~~~-------~~~~~-----------------  323 (574)
                      ..|||+.|++.++..++..+..++.++..++.    ...++++.+. +...       ...+.                 
T Consensus       167 ~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (475)
T TIGR00924       167 NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTV  246 (475)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            88999999998755444433333333222110    0000000000 0000       00000                 


Q ss_pred             -----------HHHH-HHHHHcch--hhHHHHHHHHhHhhhcccccccceeehccccCCCch----hHHHHHHHHHHHHH
Q 008185          324 -----------QFSD-LIATIGEE--SISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPS----VIGMSRVIGQSMLL  385 (574)
Q Consensus       324 -----------~~~~-~~~~~~~~--~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~----~~gl~~i~~~ig~l  385 (574)
                                 ..++ ....-+++  .+....+...+.+....+..+.++.+..+..+.+..    ..+++.....+..+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~ii  326 (475)
T TIGR00924       247 TLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVV  326 (475)
T ss_pred             HHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHH
Confidence                       0000 00000111  111111122222333333444444444443332211    24566666666666


Q ss_pred             HHHHHHH----HHHhc-CCchhHH--HHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH-HH
Q 008185          386 SLTVFYD----RYWKK-VPLRKLV--GAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF-SM  457 (574)
Q Consensus       386 ig~~l~~----~l~~r-~~~r~ll--~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~-~~  457 (574)
                      +..++..    ++.+| .+.+...  .++.++.+++.+..... .. ...-..+...+.+....+..+++++...|. ..
T Consensus       327 l~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~-~~-~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~  404 (475)
T TIGR00924       327 VGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAAS-IW-FADAGGLTSPWFMVLIYLFQTLGELMISPLGLS  404 (475)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH-Hh-hcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            6655544    44443 2223322  45555555443332211 10 000011122222333445556777767675 67


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          458 LLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       458 l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      +..+.+|++.||+++|++.....+|..+++.+......
T Consensus       405 ~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~  442 (475)
T TIGR00924       405 WWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV  442 (475)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88999999999999999998888888887777665443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.83  E-value=1.7e-17  Score=170.37  Aligned_cols=373  Identities=15%  Similarity=0.115  Sum_probs=241.7

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhhhhhhheeeccccc-cCCCccchhHhHHHHHHHHHHHHhhcc----cC-----c-c
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALY-IGGAHRIPYICIGVFLQILSWGPLALF----PV-----A-A  208 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~-~~G~rRk~~l~i~~~~~~~~~~~~~~~----~~-----~-~  208 (574)
                      .|-.|+++.....+..+++..+-..++|.+|..||+.| .+|+||-||+..|.+.++....+....    ..     + .
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            35567999999999888888776667888999999998 889999999998888766544333221    11     0 1


Q ss_pred             chHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 008185          209 KALPNL--MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVL  286 (574)
Q Consensus       209 ~~~~~l--~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~  286 (574)
                      ...+..  .+.+.+.++|.+.+.....++++|..++++|+++.++.|....+|.+++.++.|.+.+.+...-..-+....
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~  164 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV  164 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence            112222  223445688888888889999999999999999999999999999999999999988876644433333333


Q ss_pred             HHHHHHH---hhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccce-eeh
Q 008185          287 LSLQLAI---SFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMF-CYQ  362 (574)
Q Consensus       287 ~~~~~~~---~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~-~~~  362 (574)
                      +++..++   ..+=.|++.+.....     ++....++++.++++   ..+|...+...++++ ....+...+... .|-
T Consensus       165 a~i~~~l~~ia~wg~E~r~~~~~~~-----~~~~~~~f~~a~~~~---~~~~~a~~f~~fl~l-~t~a~~~QD~iLEPyg  235 (403)
T PF03209_consen  165 ALIALLLNLIALWGQEPRRSRRAAA-----AERPRPPFREAWRQV---WASPQARRFFVFLFL-GTLAFFMQDVILEPYG  235 (403)
T ss_pred             HHHHHHHHHHHHHhcccCCcccccC-----CCCCCccHHHHHHHH---HhCCChhHHHHHHHH-HHHHHHhhHHHcCCch
Confidence            3333332   333345443322100     011223445555544   367777777777666 222222222221 245


Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWK-KVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~-r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      .+++|+++.+..-+......|.++|..+.+++.. |.+.++.-.+++.+.+++... +.+...      ..+.+......
T Consensus       236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l-ii~a~~------~~~~~~~~~~~  308 (403)
T PF03209_consen  236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL-IILAGP------LGSPWLFRPGV  308 (403)
T ss_pred             hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH-HHHHHh------cccchHHHHHH
Confidence            6789999999999988888899999888887765 566666666666655544332 222211      11222211222


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccC--CCCChhHHHHHHHHHHH
Q 008185          442 GLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFG--DYSSLPVGIVIQFLAAL  519 (574)
Q Consensus       442 ~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~--~~~~l~~~~li~~~~~l  519 (574)
                      .++++..++........+.+++.++..|++.|.....+.++..++.+++|.+.|....-.+  ....+...+.+-+++.+
T Consensus       309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~  388 (403)
T PF03209_consen  309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL  388 (403)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence            2222223444555567788999999999999999999999999999999999986543222  22333445556666666


Q ss_pred             HHHHHHHhc
Q 008185          520 LPLIWIHNV  528 (574)
Q Consensus       520 l~l~~~~~v  528 (574)
                      +++..+..+
T Consensus       389 ~a~~ll~~l  397 (403)
T PF03209_consen  389 AALVLLGRL  397 (403)
T ss_pred             HHHHHHHHh
Confidence            666555444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.83  E-value=3.3e-18  Score=182.58  Aligned_cols=344  Identities=10%  Similarity=0.022  Sum_probs=214.1

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      ++..++..++.. +..+..+ .+++++|++..+.+++.+.+.+++.+ .|+.|+++||+     +||+.+.++.++.+++
T Consensus         8 ~~~~f~~~G~~~~~~~~l~~-~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-----G~r~~~~~g~~l~~~g   81 (410)
T TIGR00885         8 ITSLFALWGFANDITNPMVP-QFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-----SYKAGILLGLFLYALG   81 (410)
T ss_pred             HHHHHHHHHHHHHhHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHH
Confidence            566667777765 4444444 56888999999999999999998866 78899999985     5777777787777777


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc----
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK----  273 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~----  273 (574)
                      ..+....... .+++.+++.|++.++|.+..+...+.++.+..++++|++.+++.+....+|..+||.+++.+...    
T Consensus        82 ~~l~~~~~~~-~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~  160 (410)
T TIGR00885        82 AFLFWPAAEI-MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPH  160 (410)
T ss_pred             HHHHHHHHhh-ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            6654333211 12667788899999999999888888899998888899999999999999999999999877532    


Q ss_pred             ----------------------CChhHHHHHHHHHHHHHHHHhhh--cccccccccccchhcchhhhhhhhHHHHHHHHH
Q 008185          274 ----------------------TPPTTMFLVFAVLLSLQLAISFS--AREESLGLAQVSYQNVASKSIAQSIKKQFSDLI  329 (574)
Q Consensus       274 ----------------------~gwr~~f~i~ai~~~~~~~~~~~--lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (574)
                                            .+||++|++.+++.++..++..+  .||.+...  .+      +   +..++   +.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~--~~------~---~~~~~---~~~  226 (410)
T TIGR00885       161 QSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSD--AK------Q---ISFSA---SLS  226 (410)
T ss_pred             chhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc--cc------c---ccchh---hHH
Confidence                                  36999999998877665544433  34321110  00      0   01111   122


Q ss_pred             HHHcchhhHHHHHHHHhHhhhccc-ccccceeehcc-ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 008185          330 ATIGEESISYPLTWLVASVAMVPV-LSGSMFCYQTQ-CLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAV  407 (574)
Q Consensus       330 ~~~~~~~v~~~~l~~~l~~~~~~~-~~~~~~~~~~~-~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~  407 (574)
                      +.+++|.++...+..++ |..... ....++-|..+ ..+.+....+........+..+|..+.+++.+|.+.|+++.++
T Consensus       227 ~~~~~~~~~~~~l~~f~-yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~  305 (410)
T TIGR00885       227 RLARIRHYREGVIAQFF-YVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAY  305 (410)
T ss_pred             HHHhChhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            34567776665544444 332221 11112223322 1233433334333334455667777778888888888887766


Q ss_pred             HHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHH
Q 008185          408 QILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASG  487 (574)
Q Consensus       408 ~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~  487 (574)
                      .++..++.++.. ..         ++... +....+...+....+.....+..+..+++......++..+.  +|+++.|
T Consensus       306 ~~~~~~~~ll~~-~~---------~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p  372 (410)
T TIGR00885       306 AIIGMALCLGSI-FA---------GGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVP  372 (410)
T ss_pred             HHHHHHHHHHHH-Hc---------CChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHH
Confidence            665554433221 11         11110 11111111222233323356666777776654445554443  9999999


Q ss_pred             HHHHHHHHhhC
Q 008185          488 FLGVGLASLTG  498 (574)
Q Consensus       488 ~i~g~l~~~~g  498 (574)
                      .+.|.+.|..|
T Consensus       373 ~l~G~~~d~~~  383 (410)
T TIGR00885       373 PLQGFIIDMKE  383 (410)
T ss_pred             HHHHHHHHHhc
Confidence            99999999654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.83  E-value=3.4e-18  Score=186.17  Aligned_cols=364  Identities=9%  Similarity=0.042  Sum_probs=205.9

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhh-hhhhhhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNL-PMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l-~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +++..+...+.. .....+..|+++++|++.++++++.+.+.. .+.+.|+.|+++||+    .+||+.++++.++..+.
T Consensus        19 ~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~----~G~r~~~~~g~~~~~~g   94 (489)
T PRK10207         19 IFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHL----LGTKRTIVLGAIVLAIG   94 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhc----cchHHHHHHHHHHHHHH
Confidence            445555555554 444445568888899999999999888875 556677899999982    35777777788877777


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CccchHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKN--GIVGLQSYAFMAAASGGILGNLFGGYFLLKTP  275 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~--~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g  275 (574)
                      ...+++..+.   ...+++.|.++++|.+...+...++++|..|++  +|+.++++++.+.++|..+||.++|++.+..|
T Consensus        95 ~~~~~~~~~~---~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g  171 (489)
T PRK10207         95 YFMTGMSLLK---PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG  171 (489)
T ss_pred             HHHHHHhccc---hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            7766665432   122446788888888877666678999999775  45778899999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhccccccccc-ccchhcchhhhh-----------------hh--hH--------------
Q 008185          276 PTTMFLVFAVLLSLQLAISFSAREESLGLA-QVSYQNVASKSI-----------------AQ--SI--------------  321 (574)
Q Consensus       276 wr~~f~i~ai~~~~~~~~~~~lpEt~~~~~-~~~~~~~~~~~~-----------------~~--~~--------------  321 (574)
                      ||+.|++.++...+..+..++.++...... +.+++..+....                 .+  ..              
T Consensus       172 w~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  251 (489)
T PRK10207        172 YSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTI  251 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            999999975533322222223332211100 000000000000                 00  00              


Q ss_pred             ---HHHHHHHHHHHcchhhHHHHHH--HHhHhhhcccccccceeehccc-----cCCCchhHHHHHHHHHHHHHHHHHHH
Q 008185          322 ---KKQFSDLIATIGEESISYPLTW--LVASVAMVPVLSGSMFCYQTQC-----LNINPSVIGMSRVIGQSMLLSLTVFY  391 (574)
Q Consensus       322 ---~~~~~~~~~~~~~~~v~~~~l~--~~l~~~~~~~~~~~~~~~~~~~-----~g~s~~~~gl~~i~~~ig~lig~~l~  391 (574)
                         .+. +...+.+++|.+....++  ..+.+....+....++.+.++.     .|+.. ..........+..++..++.
T Consensus       252 ~f~~~~-~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i-~~~~~~~~n~~~iii~~pl~  329 (489)
T PRK10207        252 IFFREA-FKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSI-NPVSFQALNPFWVVVASPIL  329 (489)
T ss_pred             HHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEE-CHHHHHhHhHHHHHHHHHHH
Confidence               000 000122344433322222  1112233333334444444422     12221 11222233334454555556


Q ss_pred             HHHHhcCCchh-------HHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhc
Q 008185          392 DRYWKKVPLRK-------LVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLC  463 (574)
Q Consensus       392 ~~l~~r~~~r~-------ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~  463 (574)
                      +++.+|.++|+       .+.++.++.+++.+.......... ........+.+....+..++++....|. ..++.+.+
T Consensus       330 ~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~-~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~a  408 (489)
T PRK10207        330 AGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFA-DAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALV  408 (489)
T ss_pred             HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence            66666666654       244555554443322111000000 0000111122223344455666555554 77888999


Q ss_pred             CCChhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008185          464 PQGCEGSLTSFSASALCLSSIASGFLGVGL  493 (574)
Q Consensus       464 p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l  493 (574)
                      |++.+|.++|+++...++|+.+|..++...
T Consensus       409 P~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        409 PQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999888887776544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.82  E-value=1.4e-17  Score=176.30  Aligned_cols=353  Identities=15%  Similarity=0.113  Sum_probs=207.8

Q ss_pred             hhHHHHHHHHHHHhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHH
Q 008185          114 KQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVF  192 (574)
Q Consensus       114 ~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~  192 (574)
                      .++....++.++..|.-   .+..+.++++ .|.|.+|+|++.++..+.-.+ .|++|.++||.    .++|+.+.+..+
T Consensus         5 ~rLs~~~f~~f~~~G~~---~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~----~~~~~~l~~~~l   76 (400)
T PF03825_consen    5 FRLSLMYFLYFFAYGAF---LPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRF----GSAKRILALLSL   76 (400)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhHHHHHHHHHH
Confidence            33334333334444432   2334447776 689999999999998887666 66899999985    355666666666


Q ss_pred             HHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHH-HHHhh
Q 008185          193 LQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLF-GGYFL  271 (574)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~i-gg~l~  271 (574)
                      +.++.........+    ++.+++..++..+......+..|++.-+..++  ++.-.+-..+.+++|-+++... ++.+.
T Consensus        77 ~~~~~~~~~~~~~~----f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~  150 (400)
T PF03825_consen   77 LSALALLLLAFSSS----FWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLG  150 (400)
T ss_pred             HHHHHHHHHHHhcc----HHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHH
Confidence            65555544443322    44455555555555555555566666666543  1222333444455566555433 23333


Q ss_pred             ccC---ChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHh
Q 008185          272 LKT---PPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASV  348 (574)
Q Consensus       272 ~~~---gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~  348 (574)
                      ...   +..+.+++.++..++.....+.+|+++.+...  +     ++.+   +...++.++++++|++...++..++..
T Consensus       151 ~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~--~-----~~~~---~~~~~~~~~llk~~~~~~Fll~~~l~~  220 (400)
T PF03825_consen  151 GYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSA--K-----ESVK---KLLGLDALKLLKNPRFLVFLLAAFLIG  220 (400)
T ss_pred             hhhccccccHHHHHHHHHHHHHHHHHHhCCCCcccccc--C-----CCcc---cccchHHHHHhcCccHHHHHHHHHHHH
Confidence            322   33456777766665555556678877522111  0     0000   111223446788998876655554421


Q ss_pred             hhcccccccceeehccccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhc
Q 008185          349 AMVPVLSGSMFCYQTQCLN-INPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINL  427 (574)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~g-~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~  427 (574)
                      .....+......|.++ .| .+....|.....+.++.++.....+++.+|++.++++.++.+.+++=..    +...   
T Consensus       221 ~~~~~~~~f~~~yl~~-~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~----l~a~---  292 (400)
T PF03825_consen  221 ISHAAYYTFFSIYLQE-LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWL----LYAY---  292 (400)
T ss_pred             HHHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH----HHHH---
Confidence            1111111111223443 55 7777778887888889999989999999999999999888766544322    1110   


Q ss_pred             ccCcCcceEEeehhH----HHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHH-HhHHHHHHHHHHHHHHhhCcc
Q 008185          428 QFGVPNEVFVLCFAG----LAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASAL-CLSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       428 ~~~~~~~~~~l~~~~----l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~-~lg~~lg~~i~g~l~~~~g~~  500 (574)
                        ..++.+.......    +.+...+........++.+.+|++.|+++.|+++.+. .+|..+|+.++|.+++.+|..
T Consensus       293 --~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~  368 (400)
T PF03825_consen  293 --FSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR  368 (400)
T ss_pred             --hcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence              0011111111111    1222223344555678899999999999999999876 689999999999999998854

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.81  E-value=8.7e-19  Score=175.83  Aligned_cols=332  Identities=14%  Similarity=0.060  Sum_probs=193.6

Q ss_pred             CChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHH
Q 008185          147 LHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGA  225 (574)
Q Consensus       147 ~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~  225 (574)
                      .+..-.|++-+.+.+.-++ .|+||.+||+     |+|||.+.++.+..++...+.+... +   ++.+++.|+++|+.-
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-----yGRkpvll~c~~~va~s~ll~~~S~-~---F~afv~aR~l~Gi~k  135 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDR-----YGRKPVLLACLIGVALSYLLWALSR-N---FAAFVLARFLGGIFK  135 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhh-----hCchHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHhhhhcc
Confidence            3556678888888887655 8999999998     5899999988888888777666553 2   555556699988776


Q ss_pred             HHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc---cCChhHHHHHH---HHHHHH-HHHHhhhcc
Q 008185          226 SITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL---KTPPTTMFLVF---AVLLSL-QLAISFSAR  298 (574)
Q Consensus       226 ~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~---~~gwr~~f~i~---ai~~~~-~~~~~~~lp  298 (574)
                      +-..+. .+++.|+.++|+|+..|+....+..+|.++||.+||++.+   ..|--+-++..   .++... ...+.+++|
T Consensus       136 gnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lp  214 (451)
T KOG2615|consen  136 GNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLP  214 (451)
T ss_pred             CchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            665554 6889999999999999999999999999999999999987   33333323222   222222 222346899


Q ss_pred             cccccccccchhc-ch--hhhhhhhHHHHHHHHHHHHcchhhH------HHHHHHHhHhhh-cccccccceeehccccCC
Q 008185          299 EESLGLAQVSYQN-VA--SKSIAQSIKKQFSDLIATIGEESIS------YPLTWLVASVAM-VPVLSGSMFCYQTQCLNI  368 (574)
Q Consensus       299 Et~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~v~------~~~l~~~l~~~~-~~~~~~~~~~~~~~~~g~  368 (574)
                      ||-+...+.++.. ..  .+...+..+-....-...++|+...      +......+.|.- +..+.....++....+|+
T Consensus       215 ETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~  294 (451)
T KOG2615|consen  215 ETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGY  294 (451)
T ss_pred             ccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCC
Confidence            9954332221000 00  0000000000001111123333222      111111111111 111122222344567999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHH
Q 008185          369 NPSVIGMSRVIGQSMLLSLTVFYDRYWKKVP--LRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAET  446 (574)
Q Consensus       369 s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~--~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~  446 (574)
                      ++.+.|-++...++++++....+.+..+|..  .+-.+..+..++     .+..+....     ......+.....+..+
T Consensus       295 ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~-----vP~~llls~-----~~~~~~l~~~s~l~sf  364 (451)
T KOG2615|consen  295 SSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLI-----VPAFLLLSL-----ARTPVVLYLGSTLKSF  364 (451)
T ss_pred             ChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHH-----HHHHHHHhc-----cccchhhhHHHHHHHH
Confidence            9999998866666555544443333444432  121222221111     111111110     1111122223334444


Q ss_pred             HHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          447 LAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       447 ~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      .+......++.+..+..|+++||++.|+..+...++.++||.++|.+.++.-
T Consensus       365 ~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~  416 (451)
T KOG2615|consen  365 STASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQ  416 (451)
T ss_pred             HHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEec
Confidence            4444444456778889999999999999999999999999999998877653

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.80  E-value=1.5e-18  Score=186.57  Aligned_cols=288  Identities=13%  Similarity=-0.023  Sum_probs=199.4

Q ss_pred             HHHHHHHHHhhhcc--chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHH
Q 008185          118 VLCGLGYWVQGFRC--FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQ  194 (574)
Q Consensus       118 ~~~~~~~f~~~~~~--~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~  194 (574)
                      ..++..++.....-  +....+. -++++.+....+.+.+.+++.++|++ .++.|.|.||+|     -...+....+..
T Consensus        48 ~~~~~~y~~~~~d~~si~~a~l~-g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~-----ls~~l~~~~~~w  121 (495)
T KOG2533|consen   48 PFLCYLYFHAYLDKSSIVNASLS-GLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP-----LSKGLSVSGILW  121 (495)
T ss_pred             HHHHHHHHHHhcchhcchhHHHc-CCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC-----hHHHHHHHHHHH
Confidence            33444455555543  3333332 35678899999999999999999987 778999999974     112222222222


Q ss_pred             HHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhh---
Q 008185          195 ILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFL---  271 (574)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~---  271 (574)
                      .+...+.+.. +   +++.+++.|++.|+.-+...+....+++...+++|||..++++++...+|.++|.+++..+.   
T Consensus       122 ~~~~~~~~~~-~---s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~  197 (495)
T KOG2533|consen  122 GLFGFLTAAV-H---SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN  197 (495)
T ss_pred             HHHHHHHHHH-h---hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence            2222222222 2   36788999999998888888888888999999999999999999999999999999988763   


Q ss_pred             ---ccCChhHHHHHHHHHHHHHHHHh-hhccccccccc--ccchhcc---h-hhhhhhh--HHHHHHHHHHHHcchhhHH
Q 008185          272 ---LKTPPTTMFLVFAVLLSLQLAIS-FSAREESLGLA--QVSYQNV---A-SKSIAQS--IKKQFSDLIATIGEESISY  339 (574)
Q Consensus       272 ---~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~--~~~~~~~---~-~~~~~~~--~~~~~~~~~~~~~~~~v~~  339 (574)
                         ...||||+|.+.+++.++..++. +++|+.+....  ..++++.   + ++...+.  .+...+.+++.+++|.+|.
T Consensus       198 ~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~  277 (495)
T KOG2533|consen  198 GSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWP  277 (495)
T ss_pred             CCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHH
Confidence               35799999999999999888876 57888765322  1111100   0 0000000  0123456677899999999


Q ss_pred             HHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHHH
Q 008185          340 PLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKK----VPLRKLVGAVQILYASSL  415 (574)
Q Consensus       340 ~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r----~~~r~ll~~~~ll~~~~~  415 (574)
                      ..+..+++....+.+....|++..+..|++..+.+++.+...++.+++..+.+.+.+|    ..+|.+......++...+
T Consensus       278 ~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g  357 (495)
T KOG2533|consen  278 FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG  357 (495)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            8887777666666666666777777677999999998888888888888888888888    445545555444444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.79  E-value=1.2e-18  Score=186.88  Aligned_cols=364  Identities=13%  Similarity=0.084  Sum_probs=229.5

Q ss_pred             HHhcCCChhHHHHHHHHhhhhhhhhh-hheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHH
Q 008185          142 AHNLSLHPSTLQLVQNSGNLPMVAKP-LYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLL  220 (574)
Q Consensus       142 ~~~~~~s~~~~~l~~s~~~l~~~~~p-l~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  220 (574)
                      +.++..+..+.+++.+.+..|+.++. ..|++.||+   | .| +++..+.++.+++.++.-.+.+..  ++.+++.|++
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~---G-~r-~v~~~~~~~sa~~t~l~P~aa~~~--~~~~~~~R~l  137 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF---G-AR-RVFFISGLISALLTLLTPLAASIG--FYLLLVLRFL  137 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc---C-ch-HHHHHHHHHHHHHHHHHHHHHHhc--chhhHHHHHH
Confidence            34688899999999999999998855 589999986   4 34 445556677677766666655432  3456888999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc-CChhHHHHHHHHHHHHHHHHh-hhcc
Q 008185          221 SNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK-TPPTTMFLVFAVLLSLQLAIS-FSAR  298 (574)
Q Consensus       221 ~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~-~gwr~~f~i~ai~~~~~~~~~-~~lp  298 (574)
                      +|++.+...+....+.+...|++||++..++...+..+|.+++..++|++.+. .||+++|++.++++.+..++. ++..
T Consensus       138 qGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  138 QGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             hHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            99999998888888899999999999999999999999999999999999998 999999999999998888875 4566


Q ss_pred             cccccccccchhcchh--hhhhhhHHH--HHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHH
Q 008185          299 EESLGLAQVSYQNVAS--KSIAQSIKK--QFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIG  374 (574)
Q Consensus       299 Et~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g  374 (574)
                      |++.....-+++++++  ++..+...+  ...+++++++++.+|...+..+.-....+.+....|.|+.+++|++..+.|
T Consensus       218 d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G  297 (466)
T KOG2532|consen  218 DSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETG  297 (466)
T ss_pred             CCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhh
Confidence            6554432212111110  000000000  123566788999998776655553333444455567889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC--------chhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHH
Q 008185          375 MSRVIGQSMLLSLTVFYDRYWKKVP--------LRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAET  446 (574)
Q Consensus       375 l~~i~~~ig~lig~~l~~~l~~r~~--------~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~  446 (574)
                      +....-.+.+.+...+.+.+.|+..        .||++-....+.....++.+.+..       -.+.+..+....+...
T Consensus       298 ~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~-------~~~~~~a~~~l~~~~~  370 (466)
T KOG2532|consen  298 FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS-------DEHRLLAVILLTIAIG  370 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC-------CCcchHHHHHHHHHHH
Confidence            8766665655555555544444332        234433222222111111111110       0011111111111111


Q ss_pred             HHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHH
Q 008185          447 LAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWI  525 (574)
Q Consensus       447 ~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~  525 (574)
                      +.+....-...-..+.+ ++..+..+|+.+.+.++++.++|.+.|.+.. -+    ........+++.+++.+++-+++
T Consensus       371 ~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~~----t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  371 LSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT-DN----TREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             HcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC-CC----CHHHHHHHHHHHHHHHHHhchhe
Confidence            22222211111122224 5788999999999999999999999888764 11    12233445555555555544443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.79  E-value=1.1e-17  Score=174.63  Aligned_cols=344  Identities=13%  Similarity=0.098  Sum_probs=199.4

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhh-hhhhhheeeccccccCCCccchhH-hHHHHHH-HHHHHHhhcc---c
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPM-VAKPLYGILSDALYIGGAHRIPYI-CIGVFLQ-ILSWGPLALF---P  205 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~-~~~pl~G~lsD~~~~~G~rRk~~l-~i~~~~~-~~~~~~~~~~---~  205 (574)
                      +..+..+.+++++.|+|.+++|.+.+...+.. ..+|++|.++||+   | .||..+ .+..+.. ...+....+.   .
T Consensus        25 i~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl---g-~kK~Ll~~i~~l~~l~~pff~~v~~pll~  100 (412)
T PF01306_consen   25 IFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL---G-LKKHLLWFIAILLLLFGPFFIYVFGPLLQ  100 (412)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC---T-TCSHHHHHHHHHHHTCHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh---h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555888878999999999999987755 5599999999997   4 344433 2222211 1222211111   1


Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHH
Q 008185          206 VAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAV  285 (574)
Q Consensus       206 ~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai  285 (574)
                      .|.  ....++.-+..++......+..++++....+++  +.-.|-..+.+++|.+++..++|++.+ .+.+..||+..+
T Consensus       101 ~n~--~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~--~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~  175 (412)
T PF01306_consen  101 SNF--WLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRN--GFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASA  175 (412)
T ss_dssp             TT---HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHh--cCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHH
Confidence            110  111111111111111222233355555554332  222344567778999999999999886 578899998876


Q ss_pred             HHHHHHHHhhhcc-cccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehcc
Q 008185          286 LLSLQLAISFSAR-EESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQ  364 (574)
Q Consensus       286 ~~~~~~~~~~~lp-Et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~  364 (574)
                      .+++..++.++.+ +.+......+.+ .+     +..+...++..+++++|++|...+++.........+...++.|++.
T Consensus       176 ~~~il~lll~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~  249 (412)
T PF01306_consen  176 AAIILLLLLLLLKPDVPPQAEVADAL-GA-----KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFAS  249 (412)
T ss_dssp             HHHHHHHHHHSS---SSSSS-SSTTS-SS-----------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcCchhhhhhccc-cc-----CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655555444433 332221111000 00     0111124566778999999988887766433333333334434432


Q ss_pred             c---cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          365 C---LNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       365 ~---~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      .   .+.+...+|++...+.+...+...+.+++.+|++.|+.++++.+++++=... ..+         .++.+.+...-
T Consensus       250 ~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~-~~~---------~~~~~~i~~~k  319 (412)
T PF01306_consen  250 FFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIG-SGF---------ATNPWVISLIK  319 (412)
T ss_dssp             TSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHT-----------SHHHHHHHH
T ss_pred             HhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHH-Hhh---------hcchHHHHHHH
Confidence            2   2334566888888888899999999999999999999998876655433211 111         12223222233


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHH-HHHHHhHHHHHHHHHHHHHHhhCcc
Q 008185          442 GLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFS-ASALCLSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       442 ~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~-~~~~~lg~~lg~~i~g~l~~~~g~~  500 (574)
                      .+...-..+..++.+-++++..|++..+|.+.+. +...++|..+.+.++|.++|.+|..
T Consensus       320 lLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~  379 (412)
T PF01306_consen  320 LLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ  379 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH
Confidence            3333333455666677899999999999999985 5667899999999999999999853

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=6e-18  Score=173.14  Aligned_cols=355  Identities=16%  Similarity=0.095  Sum_probs=234.6

Q ss_pred             hhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhh-hhhhhhheeeccccccCCCccchhHhHHH
Q 008185          114 KQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLP-MVAKPLYGILSDALYIGGAHRIPYICIGV  191 (574)
Q Consensus       114 ~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~-~~~~pl~G~lsD~~~~~G~rRk~~l~i~~  191 (574)
                      ++.+. ++..+|..++.. ....++...+++++|+|+.|.+++.++..+. ..+..+.|++.||+   | +||.++ ++.
T Consensus        13 ~~~L~-~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf---G-gR~~~~-~s~   86 (417)
T COG2223          13 RRNLW-LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF---G-GRKWTI-LSM   86 (417)
T ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc---C-chHHHH-HHH
Confidence            33444 555566666665 5666677788899999999999999999874 45688899999996   4 666554 455


Q ss_pred             HHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhh
Q 008185          192 FLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFL  271 (574)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~  271 (574)
                      ++..+-.+.++++.+... ++++++++++.+++++.-.+ ....+....|||+.|.+++++. ..++|..+...++-.++
T Consensus        87 ~l~~IP~~~~~~a~~~~~-~~~ll~~gll~G~~GasFav-~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~  163 (417)
T COG2223          87 LLLLIPCLGLAFAVTYPS-TWQLLVIGLLLGLAGASFAV-GMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA  163 (417)
T ss_pred             HHHHHHHHHHHHHccCCc-hHHHHHHHHHHhcccceehc-ccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence            555666666666655433 36778887776655443322 3456788899999999999877 78888888888888887


Q ss_pred             ccCC---hhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhH
Q 008185          272 LKTP---PTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVAS  347 (574)
Q Consensus       272 ~~~g---wr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~  347 (574)
                      ...|   ||.+.++-.+..++..+.. +.+++.+......       +    +.+.  .+++..++++..|...++-+.+
T Consensus       164 ~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~-------~----~~~~--~~~~~v~~~~~~W~lsllY~~t  230 (417)
T COG2223         164 VAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV-------K----PQLP--AQLKAVFSNKDTWLLSLLYFAT  230 (417)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc-------c----ccch--hHHHHHhcCcchHHHHHHHHHH
Confidence            7788   9999998877777766664 4566654332111       0    1110  3344557789999888766666


Q ss_pred             hhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhc
Q 008185          348 VAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINL  427 (574)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~  427 (574)
                      +.....+...++.|+.+.||.++...|...........+.-.+-+++.||++.+|.......+++++..+.......   
T Consensus       231 FG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~---  307 (417)
T COG2223         231 FGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTG---  307 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccc---
Confidence            77666677777889999999999998876554444444556778899999999998887776666554432211110   


Q ss_pred             ccCc-Ccc-eEEeehh--HHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          428 QFGV-PNE-VFVLCFA--GLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       428 ~~~~-~~~-~~~l~~~--~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                       .+. ++. .+.....  .+..++++..   ..-++..+.| ++.|.+.|+...+..+|+..-|..-|...+..|
T Consensus       308 -~~~~~~~~~~~~~~l~l~~~~G~GnGs---vfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg  377 (417)
T COG2223         308 -FGHGGSFVVFVAVFLALFVFAGLGNGS---VFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG  377 (417)
T ss_pred             -cccCcchHHHHHHHHHHHHHhccCcch---heeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcc
Confidence             000 111 1111111  1111112111   1112223343 478999999999999998888888888888766

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.78  E-value=3.2e-18  Score=191.62  Aligned_cols=287  Identities=13%  Similarity=-0.012  Sum_probs=199.7

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +++.++.+.+.. .....++ .++++|+++..+.|++.+.+.+++++ .++.|++.||.     +||+++.++.++.+++
T Consensus        38 ~~~~~~~~~~~~g~~~~~l~-~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-----~r~~~i~~g~ll~~lg  111 (633)
T TIGR00805        38 LTCAQLQGLLYNGLVNSSLT-TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-----HRPIVIGIGCAIMGLG  111 (633)
T ss_pred             HHHHHHHHHHHHHHHHhhch-hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-----CcceEEEecHHHHHHH
Confidence            444556666544 4445554 56777999999999999999998866 78899999983     6777777788887877


Q ss_pred             HHHhhccc----------------C-----------c--------------------cchHHHHHHHHHHHHHHHHHHHH
Q 008185          198 WGPLALFP----------------V-----------A--------------------AKALPNLMACVLLSNLGASITEV  230 (574)
Q Consensus       198 ~~~~~~~~----------------~-----------~--------------------~~~~~~l~~~~~l~~~g~~~~~~  230 (574)
                      .++.++.+                +           +                    ...+..++++|+++++|.+...+
T Consensus       112 ~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~  191 (633)
T TIGR00805       112 SFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP  191 (633)
T ss_pred             HHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh
Confidence            77666542                0           0                    00234567889999999998888


Q ss_pred             HHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccC----------------------ChhHHHHHHHHHHH
Q 008185          231 AKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKT----------------------PPTTMFLVFAVLLS  288 (574)
Q Consensus       231 ~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~----------------------gwr~~f~i~ai~~~  288 (574)
                      ...+++.|..++++|+..+++++.+..+|+++|++++|++.+.+                      .|+..|++.+++.+
T Consensus       192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~  271 (633)
T TIGR00805       192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL  271 (633)
T ss_pred             cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999987542                      16667888877777


Q ss_pred             HHHHHhhhcccccccccc-c--chhc-c-----hhh---hhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccc
Q 008185          289 LQLAISFSAREESLGLAQ-V--SYQN-V-----ASK---SIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSG  356 (574)
Q Consensus       289 ~~~~~~~~lpEt~~~~~~-~--~~~~-~-----~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~  356 (574)
                      +..++.+++|++.+.... .  +.++ .     +++   ......++..+.+++++++|.++...+..++.+.....+..
T Consensus       272 l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~  351 (633)
T TIGR00805       272 LTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYIT  351 (633)
T ss_pred             HHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            666555566654322110 0  0000 0     000   00011233345567789999888777666554454455555


Q ss_pred             cceeehccccCCCchhHHHHHHHHHH-HHHHHHHHHHHHHhcCC--chhHHHHHHHHHH
Q 008185          357 SMFCYQTQCLNINPSVIGMSRVIGQS-MLLSLTVFYDRYWKKVP--LRKLVGAVQILYA  412 (574)
Q Consensus       357 ~~~~~~~~~~g~s~~~~gl~~i~~~i-g~lig~~l~~~l~~r~~--~r~ll~~~~ll~~  412 (574)
                      .+|.|+++.+|+++.+.+++.....+ +.++|.++.+++.+|++  .|++..++.++..
T Consensus       352 ~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~  410 (633)
T TIGR00805       352 FLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLST  410 (633)
T ss_pred             HHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHH
Confidence            66778888899999999988766554 66788888899999877  4455555544433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.77  E-value=5.1e-16  Score=169.84  Aligned_cols=165  Identities=12%  Similarity=0.052  Sum_probs=118.2

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhh-hhhhhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLP-MVAKPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~-~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +.+..++..+.. .....++.++++++|++..+.++..+.+... +...+++|+++||+    .+||+.+.++.++..++
T Consensus        26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~----~G~r~~~~~g~~~~~ig  101 (500)
T PRK09584         26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKV----LGTKRVIMLGAIVLAIG  101 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHH
Confidence            444555555543 3333455688888999999988887776543 44456899999983    25666677777777777


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CccchHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKN--GIVGLQSYAFMAAASGGILGNLFGGYFLLKTP  275 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~--~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g  275 (574)
                      ..+++...+.   ...+.+.+++.++|.+...+...+++.|..+++  +|+.++++++.+.++|..+||+++|++.+..|
T Consensus       102 ~~l~~~~~~~---~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g  178 (500)
T PRK09584        102 YALVAWSGHD---AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG  178 (500)
T ss_pred             HHHHHHhccc---HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            6666654332   234556677788887766666678889998753  34557788889999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHH
Q 008185          276 PTTMFLVFAVLLSLQL  291 (574)
Q Consensus       276 wr~~f~i~ai~~~~~~  291 (574)
                      ||+.|++.++...+..
T Consensus       179 ~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        179 WSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999876544443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.77  E-value=4.6e-17  Score=166.66  Aligned_cols=351  Identities=14%  Similarity=0.126  Sum_probs=224.6

Q ss_pred             HHHHHHHhhhh-hhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHH
Q 008185          152 LQLVQNSGNLP-MVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEV  230 (574)
Q Consensus       152 ~~l~~s~~~l~-~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~  230 (574)
                      .+...++..+- .++.|+.|-++|..    ..||+++.+...+..++...+++.++. ..+..++++..+..++...+++
T Consensus        60 ~gy~~aia~llia~LapiLG~iaD~~----g~Rk~~~~~f~~i~i~~~~~L~~i~~~-s~~~~~l~~~il~~i~~~~s~V  134 (438)
T COG2270          60 WGYASAIAGLLIALLAPILGTIADYP----GPRKKFFGFFTAIGIISTFLLWFIPPG-SYLLLLLLFLILASIGFEFSNV  134 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccC----CCcchHHHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHhcchhhe
Confidence            34444455443 35699999999973    478888887888888888888888763 2244455567778889999999


Q ss_pred             HHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHH--HHhh----------------ccCChhHHHHHHHHHHHHHHH
Q 008185          231 AKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFG--GYFL----------------LKTPPTTMFLVFAVLLSLQLA  292 (574)
Q Consensus       231 ~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~ig--g~l~----------------~~~gwr~~f~i~ai~~~~~~~  292 (574)
                      .+++++.|..++++.++..++.+....+|.++.-++.  +++.                +...-|.++.++|++.++..+
T Consensus       135 fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i  214 (438)
T COG2270         135 FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL  214 (438)
T ss_pred             ehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence            9999999999987777777766666666666654442  1111                123578889999998888877


Q ss_pred             Hh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHh-HhhhcccccccceeehccccCCCc
Q 008185          293 IS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVA-SVAMVPVLSGSMFCYQTQCLNINP  370 (574)
Q Consensus       293 ~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~g~s~  370 (574)
                      .. +.+|+.+.......      +......++-...+++..+++.+.+.++--++ .-.+. .....--.|....+|++.
T Consensus       215 Pm~~~v~~~~~~~~~~~------~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~-til~~~~~fg~~~~gls~  287 (438)
T COG2270         215 PMILNVHDAEKISSPPP------TALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVN-TILAMGGVFGAADLGLSS  287 (438)
T ss_pred             HHHhcccccccccccch------HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHH-HHHHHHHHHHHHHcCccH
Confidence            75 45766543210000      11112233333334444445555443332222 11111 111111124566899999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHh
Q 008185          371 SVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQF  450 (574)
Q Consensus       371 ~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  450 (574)
                      .+..+..+...+..++|+.+++++.+|++.|+++.++.++..+..+......         ...-+.++..++..+.+..
T Consensus       288 ~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~---------~~~~f~i~gll~g~s~G~~  358 (438)
T COG2270         288 TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE---------GELDFWILGLLVGTSLGGA  358 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc---------ccHHHHHHHHHHHHhcchH
Confidence            9999999999999999999999999999999998888776655544322111         1111112211121122222


Q ss_pred             hHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcCC
Q 008185          451 KLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPM  530 (574)
Q Consensus       451 ~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp~  530 (574)
                      +.. .-.+..++.|++++++.+|+++.....++.+||+..+.+.+..|-.       ...+....++.+++++.+..+|.
T Consensus       359 qA~-SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~-------r~g~~~i~vll~iGl~~L~~v~~  430 (438)
T COG2270         359 QAS-SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS-------RAGVLSIIVLLLIGLLLLLRVKV  430 (438)
T ss_pred             HHH-HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch-------hhHHHHHHHHHHhhHhhEEeecC
Confidence            222 2367899999999999999999999999999999999999987632       23333334445566666777776


Q ss_pred             C
Q 008185          531 S  531 (574)
Q Consensus       531 ~  531 (574)
                      .
T Consensus       431 ~  431 (438)
T COG2270         431 P  431 (438)
T ss_pred             C
Confidence            5

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.73  E-value=3.7e-16  Score=164.20  Aligned_cols=168  Identities=12%  Similarity=0.055  Sum_probs=130.7

Q ss_pred             HHHHHHHhhhccchhhhhHHHHHHhcCCChhH-HHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRCFPWLALNFHMAHNLSLHPST-LQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~~~-~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +|+..|..-+........+ ++.+++|++.++ .|.+.+.+..+|++ +.+.|+++||+     |-|+++.++.+...+.
T Consensus        32 lC~fGF~~e~R~n~s~a~p-~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-----G~K~vL~l~~l~Wsl~  105 (511)
T TIGR00806        32 LCFYGFMAQFRPGESFITP-YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-----RYKPVLVLQALSFVCV  105 (511)
T ss_pred             HHHHHHHHHhhchHHHHHH-HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHH
Confidence            4555566667653333333 667789999999 99999999999977 77899999996     4566777788888888


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPT  277 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr  277 (574)
                      +.++++..+    +..+.+.|++.|++-+... +...++....|+++|+++.++...+..+|.+++++++++ +..+|||
T Consensus       106 t~L~~fa~S----l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr  179 (511)
T TIGR00806       106 WLLLLLGTS----VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWI  179 (511)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCch
Confidence            887777642    6778899999999888877 778999999999999999999999999999999999999 5568999


Q ss_pred             HHHHHHHHHHH---HHHHHhhhccc
Q 008185          278 TMFLVFAVLLS---LQLAISFSARE  299 (574)
Q Consensus       278 ~~f~i~ai~~~---~~~~~~~~lpE  299 (574)
                      +-+.+.-+-.+   +.+++.+++|-
T Consensus       180 ~y~~Ln~Isl~s~~~a~~~a~~LP~  204 (511)
T TIGR00806       180 SYSTLNIISLVFMTFSVFLALFLKR  204 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            86655533222   22333467773

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.73  E-value=1.1e-16  Score=173.75  Aligned_cols=363  Identities=12%  Similarity=-0.003  Sum_probs=227.1

Q ss_pred             chhHHHHHHHHH-HHhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhh-hhhhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGY-WVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPM-VAKPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~-f~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~-~~~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      -|-+++..++.. ++.++..... .....++++|+.+..+++|+.++..... ..+|+.+.+.||+     +.|++.++|
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~G-v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-----g~R~v~i~G  117 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFG-LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-----GCRTVMIAG  117 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheeh-hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-----CchHHHHHH
Confidence            455554333333 3334433222 2334567789999999999999887654 5599999999984     567788889


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHH
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMAC-VLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGY  269 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~  269 (574)
                      .++..+++.+.+++.+    ++++++. -++.|+|.++...+.-..+..++ +++|+.+.++...+..+|.++-|.+..+
T Consensus       118 ~~v~~~g~~lssF~~~----i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~  192 (509)
T KOG2504|consen  118 GLVAALGLLLSSFATS----LWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKY  192 (509)
T ss_pred             HHHHHHHHHHHHHHhh----HHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHH
Confidence            9999999988877754    4445544 56678888887766555555444 4789999999999999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHHHHHHHhhhcccccccc---------------------cccchhcch---h-----------
Q 008185          270 FLLKTPPTTMFLVFAVLLSLQLAISFSAREESLGL---------------------AQVSYQNVA---S-----------  314 (574)
Q Consensus       270 l~~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~---------------------~~~~~~~~~---~-----------  314 (574)
                      +.+.+|||+.+++.+.+.+-..+..+.+++.....                     .+.+..+.+   .           
T Consensus       193 l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (509)
T KOG2504|consen  193 LLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLK  272 (509)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhh
Confidence            99999999999999888865555544433311110                     000000000   0           


Q ss_pred             --hhhhhhHHHHHHHH---HHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHH
Q 008185          315 --KSIAQSIKKQFSDL---IATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTV  389 (574)
Q Consensus       315 --~~~~~~~~~~~~~~---~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~  389 (574)
                        ....+....+..-.   +.++++|.++...+...+.+.........++.+ .+.+|++..+...+....++..+++-+
T Consensus       273 ~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~-~~~~g~~~~~aa~l~Siigi~~i~gRi  351 (509)
T KOG2504|consen  273 RGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSY-AKSLGLSSNDAAFLLSIIGVSDIIGRI  351 (509)
T ss_pred             hCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCChhhhHHHHHHHHHhhhhhhh
Confidence              00000000011111   356788877766655444222221111112223 347899999999999999999999999


Q ss_pred             HHHHHHhcCCchhHHH--HHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHH-HHHHhhcCCC
Q 008185          390 FYDRYWKKVPLRKLVG--AVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFS-MLLARLCPQG  466 (574)
Q Consensus       390 l~~~l~~r~~~r~ll~--~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~-~l~~~~~p~~  466 (574)
                      +.+.+.++...++...  ++.++.++..   +++...       .+.+.......+++...+ .+..+. ..+.++++.+
T Consensus       352 ~~G~laD~~~~~~~~~~~~~ll~~gl~~---~~~p~~-------~~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~  420 (509)
T KOG2504|consen  352 ILGLLADKPGIRALVLFLLTLLIAGLAR---LFLPFA-------TTYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLE  420 (509)
T ss_pred             hhhhhcCccccchHHHHHHHHHHHHHHH---HHHHHh-------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChh
Confidence            9999998877544433  3333222222   111110       011111112222222221 222222 4578899999


Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          467 CEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       467 ~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      .-..++|+...++.++..+||.+.|.+.+..|
T Consensus       421 ~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg  452 (509)
T KOG2504|consen  421 KLSNAYGLLLLFQGIGALVGPPIAGLLYDITG  452 (509)
T ss_pred             hcchHHHHHHHHhHHHHHcCcccceeeeeccC
Confidence            99999999999999999999999998887665

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.73  E-value=8.4e-18  Score=172.54  Aligned_cols=401  Identities=13%  Similarity=0.046  Sum_probs=230.9

Q ss_pred             HHHHhhhcc-chhhhhHHHHHHhcC-------CChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHH
Q 008185          123 GYWVQGFRC-FPWLALNFHMAHNLS-------LHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFL  193 (574)
Q Consensus       123 ~~f~~~~~~-~~~~~~~~~l~~~~~-------~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~  193 (574)
                      +.|...++. ...+..+.+-.-+.|       .+....+++-.+..++-++ +.++|++.|++     +||.++....++
T Consensus        49 GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-----GRK~vYG~~liI  123 (538)
T KOG0252|consen   49 GFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-----GRKKVYGKELII  123 (538)
T ss_pred             hhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cchhhhhHHHHH
Confidence            345555554 444444433333333       3455677777778888877 66799999985     677777777777


Q ss_pred             HHHHHHHhhcccCc--c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          194 QILSWGPLALFPVA--A-KALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       194 ~~~~~~~~~~~~~~--~-~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      ++++..+.++....  + ....++..+|++.++|.+.-.+.....+.|.+.++.||...+...+....|.+.|.+++-.+
T Consensus       124 mIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv  203 (538)
T KOG0252|consen  124 MIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV  203 (538)
T ss_pred             HHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence            78887755554321  1 22466788899998888876666667788998888999888766555555555444444332


Q ss_pred             h----ccC-----------ChhHHHHHHHHHHHHHHHHhhhcccccccccccch------hcchhh-hh-----------
Q 008185          271 L----LKT-----------PPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSY------QNVASK-SI-----------  317 (574)
Q Consensus       271 ~----~~~-----------gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~------~~~~~~-~~-----------  317 (574)
                      .    ..+           =||..|.+.++.+++++...+.+|||.+......+      ++..++ +.           
T Consensus       204 ~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~  283 (538)
T KOG0252|consen  204 SAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESD  283 (538)
T ss_pred             HHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccC
Confidence            2    111           29999999988887777767889998765421110      000000 00           


Q ss_pred             hhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehc---cccCCCchhHHH-----H----HHHHHHHHH
Q 008185          318 AQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQT---QCLNINPSVIGM-----S----RVIGQSMLL  385 (574)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~g~s~~~~gl-----~----~i~~~ig~l  385 (574)
                      ....++..+.+.+.+... .-+.++-...+|+..-..+...-.++.   +..|+.+....+     .    .+....+.+
T Consensus       284 ~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~v  362 (538)
T KOG0252|consen  284 VPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTV  362 (538)
T ss_pred             CCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccC
Confidence            000000111111112222 112222222234333222222222222   224555443333     1    122223333


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH---HHHHHhh
Q 008185          386 SLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF---SMLLARL  462 (574)
Q Consensus       386 ig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~---~~l~~~~  462 (574)
                      .|.++...+.++.+++.+.+.+.+++.+.+++..   ..++. . .....+..+ ..+..++++  +.|.   .+..+|.
T Consensus       363 PGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~---~~y~~-~-~~~~Gf~v~-y~l~~ff~N--FGPn~ttfivpaE~  434 (538)
T KOG0252|consen  363 PGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIA---GPYNQ-L-ENTIGFVVL-YSLTFFFGN--FGPNATTFIVPAEI  434 (538)
T ss_pred             CceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHc---CCccc-c-cccCceeeh-HHHHHHHHh--cCCCceeEEeehhh
Confidence            4445555677889999998888887776654321   11221 0 111122222 233333332  2332   2346899


Q ss_pred             cCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHh
Q 008185          463 CPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKGRK  540 (574)
Q Consensus       463 ~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp~~~~~~~~~~~  540 (574)
                      +|.+.||+..|+.....++|..+|......+.+.--   .........+.+.+.+.++++++-+++||++++++||..
T Consensus       435 FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~y---p~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~  509 (538)
T KOG0252|consen  435 FPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNY---PPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEIS  509 (538)
T ss_pred             chHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccC---CccccchHHHHHHHHHHHHhHheeEEeecccccCHHHhc
Confidence            999999999999999999999999888777777210   111223455667777778888888899999999998773

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.71  E-value=1.5e-15  Score=165.63  Aligned_cols=336  Identities=15%  Similarity=0.062  Sum_probs=193.4

Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHH
Q 008185          139 FHMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMAC  217 (574)
Q Consensus       139 ~~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  217 (574)
                      .++..++|-+ ....|+.+...++.+ ..|+.|.+||.+     +||..++.+.++..+..++.+.+.+    ..++++.
T Consensus        68 ~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-----GRr~~~i~g~~l~vvG~Iv~atA~~----~~~~iag  137 (599)
T PF06609_consen   68 PYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-----GRRYFFIIGSLLGVVGSIVCATAQN----MNTFIAG  137 (599)
T ss_pred             HHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-----cchHHHHHHHHHHHhHHHHhhcCCc----HHHHHHH
Confidence            3666778865 566777777777654 489999999974     5778888888888888887776643    5667888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh-h-
Q 008185          218 VLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS-F-  295 (574)
Q Consensus       218 ~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~-~-  295 (574)
                      ..+.++|.+..... ...++|..+.+.|+...++......+...+||.++..+..+.+|||.|++.+++..+.+++. + 
T Consensus       138 ~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  138 MVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             HHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            88888888777654 45589999988887666555444444555677777766667799999999999887776653 3 


Q ss_pred             hcccccccc-cc-c-chhcc---h----------------------h-hhhhhh------------------HHHHH---
Q 008185          296 SAREESLGL-AQ-V-SYQNV---A----------------------S-KSIAQS------------------IKKQF---  325 (574)
Q Consensus       296 ~lpEt~~~~-~~-~-~~~~~---~----------------------~-~~~~~~------------------~~~~~---  325 (574)
                      ..|.++... .+ . +++..   |                      . ...+.+                  +.+..   
T Consensus       217 Y~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~  296 (599)
T PF06609_consen  217 YFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAP  296 (599)
T ss_pred             hCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccC
Confidence            344332211 11 0 11110   1                      0 000000                  00100   


Q ss_pred             H---HHHHHHcchhhHHH-HHHHHhHhhhcccccccceeehccccCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008185          326 S---DLIATIGEESISYP-LTWLVASVAMVPVLSGSMFCYQTQCLNINP---SVIGMSRVIGQSMLLSLTVFYDRYWKKV  398 (574)
Q Consensus       326 ~---~~~~~~~~~~v~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~---~~~gl~~i~~~ig~lig~~l~~~l~~r~  398 (574)
                      +   -..+++++++.+.. ++..++.....+.....+|......++-++   ...++......++.+.|..+.+.+.++.
T Consensus       297 ~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i  376 (599)
T PF06609_consen  297 KDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI  376 (599)
T ss_pred             CCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc
Confidence            0   12356777544333 233333111111111112222223344443   2456666667777777777777777655


Q ss_pred             CchhH-HHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHH
Q 008185          399 PLRKL-VGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSAS  477 (574)
Q Consensus       399 ~~r~l-l~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~  477 (574)
                      ++-|. ++++.+++++.. ..+.....       ++.-..+....+.++..+....|..+..+-.+|++..|++.|+..+
T Consensus       377 r~~Kw~li~~~~~~ta~~-Gama~~~~-------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s  448 (599)
T PF06609_consen  377 RHIKWQLIFGSVLMTAFC-GAMAAVRP-------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGS  448 (599)
T ss_pred             cchhHHHHHHHHHHHHHH-HHHHHccC-------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHH
Confidence            54443 344544443321 11111111       1111112222222222233444555556667899999999999999


Q ss_pred             HHHhHHHHHHHHHHHH
Q 008185          478 ALCLSSIASGFLGVGL  493 (574)
Q Consensus       478 ~~~lg~~lg~~i~g~l  493 (574)
                      ++.+|+++|..+...+
T Consensus       449 ~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  449 IRSIGGSIGYAIYNAI  464 (599)
T ss_pred             HHHHhhHHHHHHHHHH
Confidence            9999999987765443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.70  E-value=3.3e-21  Score=208.02  Aligned_cols=375  Identities=17%  Similarity=0.071  Sum_probs=216.0

Q ss_pred             HHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHH
Q 008185          151 TLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITE  229 (574)
Q Consensus       151 ~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~  229 (574)
                      ..++..+...++..+ .+++|.++||+     +||+.+.++.++..++..+.++.+.. .+...++++|++.|++.+...
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-----GRk~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~R~~~G~~~g~~~  120 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-----GRKPALIISALLMIIGSILIAFAPSY-NNFWMLLIGRFLIGFGIGGAY  120 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-----cccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            467778888888777 66789999985     56677777777777888777777522 124667888999999988888


Q ss_pred             HHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc---CChhHHHHHHHHHHHHHHHHhhhcccccccccc
Q 008185          230 VAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK---TPPTTMFLVFAVLLSLQLAISFSAREESLGLAQ  306 (574)
Q Consensus       230 ~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~---~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~  306 (574)
                      .....++.|..+++.|+...++...+..+|.+++..++-.+...   .+||+.+++.+++.++..+..+++||++++...
T Consensus       121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~  200 (451)
T PF00083_consen  121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLS  200 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecc
Confidence            78888999999999999999988888888888888776544333   349999999988887766666789999987653


Q ss_pred             cchhcch-----h---h-hhhhhH---HHHH-------HHHHHHHcchhhH-HHHHHHHhHhhhcccccccceeeh---c
Q 008185          307 VSYQNVA-----S---K-SIAQSI---KKQF-------SDLIATIGEESIS-YPLTWLVASVAMVPVLSGSMFCYQ---T  363 (574)
Q Consensus       307 ~~~~~~~-----~---~-~~~~~~---~~~~-------~~~~~~~~~~~v~-~~~l~~~l~~~~~~~~~~~~~~~~---~  363 (574)
                      +++.+.+     +   + ...++.   ++..       ....++++++... .......+.............+|.   .
T Consensus       201 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~  280 (451)
T PF00083_consen  201 KGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIF  280 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccc
Confidence            3222111     0   0 000000   0000       0112233332211 111111110111000101111121   2


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHH
Q 008185          364 QCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGL  443 (574)
Q Consensus       364 ~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l  443 (574)
                      +..+.+..  -+..+...+..+++..+...+.+|+++|++++.+.++.+++.+....... .............+....+
T Consensus       281 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~l  357 (451)
T PF00083_consen  281 ENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFF-LGVSSSSWWSILSIVFLAL  357 (451)
T ss_pred             cccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccceeeee
Confidence            33455544  11122222333334444446778899998888777666555443210010 0000000001111111111


Q ss_pred             HHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHH
Q 008185          444 AETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPL  522 (574)
Q Consensus       444 ~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l  522 (574)
                      ..........|. ..+..|++|.+.|+++.|+...+.+++..+++.+...+.+..+.       .....++.++..+..+
T Consensus       358 ~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-------~~~~~i~~~~~~i~~i  430 (451)
T PF00083_consen  358 FFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGG-------WGVFLIFAGVCLIAII  430 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccchhhHHHHHHHHh
Confidence            111112222333 35679999999999999999999998888888776665554441       1112222333333334


Q ss_pred             HHHHhcCCCHHHHHHHHhc
Q 008185          523 IWIHNVPMSETIIEKGRKR  541 (574)
Q Consensus       523 ~~~~~vp~~~~~~~~~~~~  541 (574)
                      +.+.++|||+++++||.++
T Consensus       431 ~~~~~lpET~g~~l~ei~~  449 (451)
T PF00083_consen  431 FVYFFLPETKGKTLEEIQE  449 (451)
T ss_pred             heeEEEeeCCCCCHHHHHh
Confidence            4567899999999998875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.70  E-value=1.7e-14  Score=155.60  Aligned_cols=160  Identities=15%  Similarity=0.049  Sum_probs=109.4

Q ss_pred             HHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHH
Q 008185          122 LGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWG  199 (574)
Q Consensus       122 ~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~  199 (574)
                      +..+...+.. .....++.++.+++|.++.+.+.+.+.+.....+ .++.|+++||+    .+||+.+.++.++..+...
T Consensus        16 ~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRi----lGrrr~iliG~il~~lg~l   91 (493)
T PRK15462         16 ALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKV----LGNRMAVMLGALLMAIGHV   91 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHHHH
Confidence            3334434433 3334455578888999999999998888776554 55789999984    2566666677777666655


Q ss_pred             HhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CccchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 008185          200 PLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKN--GIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPT  277 (574)
Q Consensus       200 ~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~--~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr  277 (574)
                      +++....+   ...+.+...+..+|.+.......++++|..|++  +|..+.++.+.+.++|..++|++.|++.+..|||
T Consensus        92 ll~~~~~~---~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~  168 (493)
T PRK15462         92 VLGASEIH---PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA  168 (493)
T ss_pred             HHHHhhcc---hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence            55432211   111222233333444443344467889998764  6888899999999999999999999999989999


Q ss_pred             HHHHHHHHHHH
Q 008185          278 TMFLVFAVLLS  288 (574)
Q Consensus       278 ~~f~i~ai~~~  288 (574)
                      +.|++.++..+
T Consensus       169 ~~F~iaaigm~  179 (493)
T PRK15462        169 MGFGLAAVGMI  179 (493)
T ss_pred             HHHHHHHHHHH
Confidence            99999765433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.68  E-value=1.7e-14  Score=147.08  Aligned_cols=345  Identities=15%  Similarity=0.105  Sum_probs=231.2

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhh-hheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKP-LYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~p-l~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +....|.-|+.. +... +.+++++.|+++..+++++...+..+|.+.. ..|.+.+|+     ++|.-++++..++++.
T Consensus        18 ~t~lFfl~G~~~~l~di-Lip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-----gyk~gi~lgL~l~avg   91 (422)
T COG0738          18 LTSLFFLWGFITCLNDI-LIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-----GYKAGIVLGLLLYAVG   91 (422)
T ss_pred             HHHHHHHHHHHhhcchh-hHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-----hhHHHHHHHHHHHHHH
Confidence            445556666665 4444 4458899999999999999999999998754 589999985     4555566687777777


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc----
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK----  273 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~----  273 (574)
                      ..+..-+++. ..+..+++..++.+.|.+..+..++.++.++.++++...-+++.+....+|.++||++++.++..    
T Consensus        92 ~~lF~pAa~~-~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~  170 (422)
T COG0738          92 AALFWPAASS-KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVAL  170 (422)
T ss_pred             HHHHhhhhhh-hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Confidence            7666544332 23566677788888999999999999999999887667778888999999999999999988762    


Q ss_pred             ---------------CChhHHHHHHHHHHHHHHHHhhh--cccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchh
Q 008185          274 ---------------TPPTTMFLVFAVLLSLQLAISFS--AREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEES  336 (574)
Q Consensus       274 ---------------~gwr~~f~i~ai~~~~~~~~~~~--lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (574)
                                     ..|++.|.+.+.+.+++.+....  .||.+.......+           .++.  ...+++++|.
T Consensus       171 ~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~-----------~~~~--~~~~l~~~~~  237 (422)
T COG0738         171 TMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA-----------SGSA--GLSSLFQNKH  237 (422)
T ss_pred             ccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc-----------cccc--hHHHHHhChH
Confidence                           24888998887776666655443  4544332211100           0000  2234567888


Q ss_pred             hHHHHHHHHhHhhhccccccc-ceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 008185          337 ISYPLTWLVASVAMVPVLSGS-MFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSL  415 (574)
Q Consensus       337 v~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~  415 (574)
                      +..-.+..++ |.......+. ++.|..+..|.++.+.........++.++|-++..++.+|+...|.+...+++..+.+
T Consensus       238 ~~~gvl~~Fl-YVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~  316 (422)
T COG0738         238 LRLGVLAIFL-YVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLL  316 (422)
T ss_pred             HHHHHHHHHH-HHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            8887777776 5544333333 3345566688899998888888889999999888899999999998887765544332


Q ss_pred             hHHHHhhhhhhcccCcCcceEEeehhHHHHH-HHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008185          416 LLDLILVRQINLQFGVPNEVFVLCFAGLAET-LAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLA  494 (574)
Q Consensus       416 l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~  494 (574)
                      +. ..+..         .  .+.+...+..+ +...++.....+..+..|++.+  ..|..-.+...|+++-|.+-|.+.
T Consensus       317 ~~-~~l~~---------g--~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts--~~s~~l~maivGGAiiP~l~G~i~  382 (422)
T COG0738         317 LA-VALIG---------G--VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS--VGSGLLVMAIVGGAIIPPLQGVIA  382 (422)
T ss_pred             HH-HHHhc---------C--hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc--ccceeeeeheecchHHHHHHHHHH
Confidence            22 11111         1  11111111111 2223333335666677774433  233344556788899999999999


Q ss_pred             HhhCc
Q 008185          495 SLTGI  499 (574)
Q Consensus       495 ~~~g~  499 (574)
                      |..|.
T Consensus       383 d~~g~  387 (422)
T COG0738         383 DMFGI  387 (422)
T ss_pred             Hhhhh
Confidence            98874

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.66  E-value=6e-14  Score=141.02  Aligned_cols=324  Identities=16%  Similarity=0.081  Sum_probs=209.7

Q ss_pred             hhHHHHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHH
Q 008185          136 ALNFHMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNL  214 (574)
Q Consensus       136 ~~~~~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l  214 (574)
                      ++...+++++|+|.+.+|++.++..+.+. +.|+..++..|+   |-.|  .+..+.++.++...+=...     ....+
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~---g~er--~l~~~Llli~~G~~iR~~~-----~~~~L  102 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF---GEER--SLFLALLLIAAGILIRSLG-----GLPLL  102 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---hhHH--HHHHHHHHHHHHHHHHhcc-----cHHHH
Confidence            34456788999999999999999999875 488888888775   4233  3333444433333322222     13445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHH
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKT-PPTTMFLVFAVLLSLQLAI  293 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~-gwr~~f~i~ai~~~~~~~~  293 (574)
                      +..-.+.+.|.+...+..++++.+.+| ++-+.++++|.+...+|..+++.+.-.+.++. |||....+-+.++++.+++
T Consensus       103 ~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~  181 (395)
T COG2807         103 FLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI  181 (395)
T ss_pred             HHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            666777788888888888888888887 55688999999999999999999988888776 7999888777777666554


Q ss_pred             hhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhH
Q 008185          294 SFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVI  373 (574)
Q Consensus       294 ~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~  373 (574)
                      .+  |...+......+.    +.         ++-..++++|.-|.+.+|+.+.....|....-+|-++. +.|+|+.+.
T Consensus       182 Wl--Pq~~r~~~~~~~~----~~---------~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~a  245 (395)
T COG2807         182 WL--PQALREQAASIAT----KL---------VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEA  245 (395)
T ss_pred             Hh--hhccccccccccc----cc---------ccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHh
Confidence            43  2211110000000    00         00112467888999999988755555555554554444 589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhH
Q 008185          374 GMSRVIGQSMLLSLTVFYDRYWKKV-PLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKL  452 (574)
Q Consensus       374 gl~~i~~~ig~lig~~l~~~l~~r~-~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  452 (574)
                      |.+.....+..+..+...+.+.+|. +.|.+.....+++ ..+++.+.+..         ...+.+-  .+..+++....
T Consensus       246 G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~-l~G~~G~~~~P---------~~~~~lw--~~llG~G~G~~  313 (395)
T COG2807         246 GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLM-LVGLVGLLLAP---------GQLPILW--ALLLGLGQGGA  313 (395)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHhh---------hhHHHHH--HHHHhCccchH
Confidence            9887777777777777777777653 4455554443333 33333332221         1111000  12223333334


Q ss_pred             HHH-HHHHHhhc-CCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          453 LPF-SMLLARLC-PQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       453 ~p~-~~l~~~~~-p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      +|. ++++.... .+++.+...|+.+.+..+=.++||.+.|.+-|..|
T Consensus       314 F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g  361 (395)
T COG2807         314 FPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG  361 (395)
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence            444 44555443 45677888899999999999999999999999876

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.58  E-value=2.3e-13  Score=136.23  Aligned_cols=390  Identities=12%  Similarity=0.022  Sum_probs=209.2

Q ss_pred             chhHHHHHHHHHHHhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhh-hhheeeccccccCCCccchhHhHHH
Q 008185          113 NKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAK-PLYGILSDALYIGGAHRIPYICIGV  191 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~-pl~G~lsD~~~~~G~rRk~~l~i~~  191 (574)
                      .|........+.+...+-.+...-+.+-+....|.+..+..++......++.++ -.||.++|++   | |||-.. +..
T Consensus        76 q~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~---g-rr~~f~-~T~  150 (528)
T KOG0253|consen   76 QWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI---G-RRKGFN-LTF  150 (528)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh---h-cchhhh-hhH
Confidence            555555444444333332222222333456667888888888888888888874 4799999986   3 665443 343


Q ss_pred             HHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhh
Q 008185          192 FLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFL  271 (574)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~  271 (574)
                      +...+.-.+-+..++    +..++++|.+-++|.+. .+...++-.|..|..+|+..+-.. ..+.+|.++...+.=.++
T Consensus       151 l~t~v~~~is~~spn----f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm  224 (528)
T KOG0253|consen  151 LVTGVFGVISGASPN----FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM  224 (528)
T ss_pred             HHHHHHHHhhcCCCC----eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH
Confidence            333333333333332    56678888887766655 333456678888887887765444 778899999999988888


Q ss_pred             ccCChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcc-----------h------------hhhhh--hh--H---
Q 008185          272 LKTPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNV-----------A------------SKSIA--QS--I---  321 (574)
Q Consensus       272 ~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~-----------~------------~~~~~--~~--~---  321 (574)
                      .++||||..........+.....+++||+++.....+.+.+           +            .+..+  +.  .   
T Consensus       225 ~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~  304 (528)
T KOG0253|consen  225 SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDS  304 (528)
T ss_pred             HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhh
Confidence            89999998888776555555566789998765432111000           0            00000  00  0   


Q ss_pred             -----HHHHHHHHHHHcchhhHH-----HHHHH--HhHhhhccc-------ccccce-------eehccccCCCc-hhHH
Q 008185          322 -----KKQFSDLIATIGEESISY-----PLTWL--VASVAMVPV-------LSGSMF-------CYQTQCLNINP-SVIG  374 (574)
Q Consensus       322 -----~~~~~~~~~~~~~~~v~~-----~~l~~--~l~~~~~~~-------~~~~~~-------~~~~~~~g~s~-~~~g  374 (574)
                           ++.......++ .|.+.+     ..++.  ...|+....       .....+       ++.....+... ..--
T Consensus       305 ~~~a~ke~rg~~~nLl-sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~d  383 (528)
T KOG0253|consen  305 KSSAAKEVRGGTTNLL-SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKD  383 (528)
T ss_pred             hhccccccccchHhhc-ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhH
Confidence                 00000011111 111111     11110  011111100       111111       11111011110 1112


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHH
Q 008185          375 MS-RVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLL  453 (574)
Q Consensus       375 l~-~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  453 (574)
                      +. .+...+..+.|..+.+.+.+|.|+|+.+..+.+++.++.+....+..        ++...++  ...+.++....+.
T Consensus       384 YrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~--------rn~~tvl--lf~arafisg~fq  453 (528)
T KOG0253|consen  384 YRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKT--------RNAYTVL--LFTARAFISGAFQ  453 (528)
T ss_pred             HHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC--------cchhHHH--HHHHHHHHhchhe
Confidence            22 34445566667777777788889999888887777666554332221        1111111  1111122222222


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcC-CCH
Q 008185          454 PFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVP-MSE  532 (574)
Q Consensus       454 p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp-~~~  532 (574)
                      ...++.-|++|...|++..|...++..+|+.+.|+++ ...+ .        +.+..+.+...+.+++.+...+.| |+|
T Consensus       454 vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e-~--------s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  454 VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAE-L--------STSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhc-c--------ceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            2235677999999999999999999999999999987 2211 1        122334444445555555555666 555


Q ss_pred             HH
Q 008185          533 TI  534 (574)
Q Consensus       533 ~~  534 (574)
                      ++
T Consensus       524 GR  525 (528)
T KOG0253|consen  524 GR  525 (528)
T ss_pred             CC
Confidence            43

>TIGR01272 gluP glucose/galactose transporter

Probab=99.54  E-value=1.1e-12  Score=134.84  Aligned_cols=262  Identities=13%  Similarity=0.047  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc----------------C
Q 008185          211 LPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK----------------T  274 (574)
Q Consensus       211 ~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~----------------~  274 (574)
                      +..+++..++.+.|.++.++..+.++++..+++++++.+++......+|.++||++++.+...                .
T Consensus        10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~   89 (310)
T TIGR01272        10 YVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAA   89 (310)
T ss_pred             HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHH
Confidence            566778888899999999999999999999988899999999999999999999999987732                3


Q ss_pred             ChhHHHHHHHHHHHHHHHHhhh--cccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcc
Q 008185          275 PPTTMFLVFAVLLSLQLAISFS--AREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVP  352 (574)
Q Consensus       275 gwr~~f~i~ai~~~~~~~~~~~--lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~  352 (574)
                      .|+++|++.+.+.++..++..+  +||.+.+..+ +      ....+..     +.++.+++|.++...+.+++ |...-
T Consensus        90 ~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~-~------~~~~~~~-----~~~~~~~~~~~~l~~~~~f~-yvg~e  156 (310)
T TIGR01272        90 KVHTPYLLLAGALAVLAIIFAFLPLPELQEADVA-R------VSSGDTT-----QKTSAFQFTHLVLGALGIFV-YVGAE  156 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCCCccccc-c------ccccccc-----chhhHHhhHHHHHHHHHHHH-HHHHH
Confidence            6999999777666555554333  5664322111 0      0000000     01123455666654444444 33222


Q ss_pred             -cccccceeehcc--ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 008185          353 -VLSGSMFCYQTQ--CLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQF  429 (574)
Q Consensus       353 -~~~~~~~~~~~~--~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~  429 (574)
                       ...+.++.|..+  .+|+++.+.++.......+.++|..+.+++.+|++.|+++.++.++..+..++. ....      
T Consensus       157 ~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~-~~~~------  229 (310)
T TIGR01272       157 VSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGA-ALTH------  229 (310)
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-HHcC------
Confidence             122223445553  479999999999999999999999999999999999998877665554433211 1110      


Q ss_pred             CcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          430 GVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       430 ~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                         .... .. ..+..+++.....|. ..+..+..|+ ..+++.++. ....+|+++.|.+.|.+.|..|.
T Consensus       230 ---~~~~-~~-~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~  293 (310)
T TIGR01272       230 ---GYVA-MW-FVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGI  293 (310)
T ss_pred             ---CHHH-HH-HHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccc
Confidence               0100 00 111112222233444 4555666654 355666664 56778999999999999997764

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PTZ00207 hypothetical protein; Provisional

Probab=99.53  E-value=3.3e-11  Score=132.48  Aligned_cols=179  Identities=15%  Similarity=0.069  Sum_probs=127.2

Q ss_pred             chhHHHHHHHHHHHhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhhhheeeccccccCCCccchhHhHHHH
Q 008185          113 NKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVF  192 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~  192 (574)
                      +|...+...+...+.+..+...... ..+++++|+|..+.+++.++......++++.|+++||+     +||+.+.++.+
T Consensus        26 Rw~~lva~~~~~~~~g~~y~fsv~s-~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~-----G~R~vllig~l   99 (591)
T PTZ00207         26 RFALLVLGAFCSICTSFMYAFNLIS-GAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYL-----GPRPIFVLSMT   99 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHH
Confidence            6665553444444444443222322 35688899999999998877433223466789999985     57777778888


Q ss_pred             HHHHHHHHhhcccCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHH-HHHHHHH
Q 008185          193 LQILSWGPLALFPVA--AKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGIL-GNLFGGY  269 (574)
Q Consensus       193 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~i-gp~igg~  269 (574)
                      +..++..++++..+.  ..+++.+.++|++.++|.+..++.....+.+.+| ++||.++++...+..+|+++ +++..++
T Consensus       100 l~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        100 VFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             HHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888777775221  0136777888999999988887777777888775 78999999999999998875 6666665


Q ss_pred             hhccCChhHHHHHHHHHHHHHHHHh-hhcccc
Q 008185          270 FLLKTPPTTMFLVFAVLLSLQLAIS-FSAREE  300 (574)
Q Consensus       270 l~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt  300 (574)
                      +.  .+|++.|++.+++++++.++. +++++.
T Consensus       179 ~~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        179 FS--DNTSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HH--HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            54  479999999999888877764 455444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=99.52  E-value=1.1e-12  Score=131.76  Aligned_cols=368  Identities=12%  Similarity=0.114  Sum_probs=214.1

Q ss_pred             hhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhhhheeecccccc--CCCccchhHhHH
Q 008185          114 KQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYI--GGAHRIPYICIG  190 (574)
Q Consensus       114 ~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~~--~G~rRk~~l~i~  190 (574)
                      ++.+.++.+.|..||+.. +.. ++|.+++. =|+|-+..+. .+....||.++.+|+|+.|.+..  +| |||.|++-.
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~-fS~ay~P~sLKllWaPiVDs~y~k~~G-rrksWvvp~  105 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAI-FSFAYWPFSLKLLWAPIVDSVYSKRFG-RRKSWVVPC  105 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhh-hhhhhhHHHHHHHHHhhhHHHHHHhhc-cccceeeeh
Confidence            334444788899999977 555 77777774 4888887775 56667799999999999994322  24 888887766


Q ss_pred             HHHHHHHHHHhhcccCc-----cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHH
Q 008185          191 VFLQILSWGPLALFPVA-----AK--ALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILG  263 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-----~~--~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~ig  263 (574)
                      ..+..+.+..++...+.     ..  ....+...+++..++++..|+++|+....+..+++-|.+..    +..+|.-+|
T Consensus       106 q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST----~q~Vg~~~G  181 (510)
T KOG3574|consen  106 QYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAST----CQSVGQTAG  181 (510)
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhH----HHHHHHhhh
Confidence            65544444444443221     11  11223335667789999999999999999998888776644    445566666


Q ss_pred             HHHHHHhhcc-----------CChh---------HHHHHHHHHHHHHHHH-hhhcccccccccccchhcchhhhhhhhHH
Q 008185          264 NLFGGYFLLK-----------TPPT---------TMFLVFAVLLSLQLAI-SFSAREESLGLAQVSYQNVASKSIAQSIK  322 (574)
Q Consensus       264 p~igg~l~~~-----------~gwr---------~~f~i~ai~~~~~~~~-~~~lpEt~~~~~~~~~~~~~~~~~~~~~~  322 (574)
                      .++++.+.-.           .+|.         .-.|.-+.+..+...+ .++-+|.+....+         +.....+
T Consensus       182 yfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~---------e~~~~i~  252 (510)
T KOG3574|consen  182 YFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDE---------ELELGIH  252 (510)
T ss_pred             HHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhh---------hhhcCHH
Confidence            6565533210           1122         1122223333333333 3455554433111         1112344


Q ss_pred             HHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 008185          323 KQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRK  402 (574)
Q Consensus       323 ~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~  402 (574)
                      +..+-++..++-|.+...+.+... +-.......+....-.-+.|++..+.++..++.....++.....+++..+.....
T Consensus       253 ~~yk~l~~vLklk~v~~la~i~lt-~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~  331 (510)
T KOG3574|consen  253 ESYKLLRDVLKLKSVRWLAGILLT-GKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLN  331 (510)
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHH-HHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcch
Confidence            455556666777777655555544 3444444455444444568999988888766665566666666666554221110


Q ss_pred             H----HHHHHHHHHHHHhHHHHhhhhhhc-ccCcCcceEEe--ehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHH
Q 008185          403 L----VGAVQILYASSLLLDLILVRQINL-QFGVPNEVFVL--CFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFS  475 (574)
Q Consensus       403 l----l~~~~ll~~~~~l~~l~l~~~~~~-~~~~~~~~~~l--~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~  475 (574)
                      .    +.+-.+ ...+.....+....+.. .-.++..++++  +...+.+++...+++..++..+++.++..-||+|.+.
T Consensus       332 ~~lka~~~R~~-~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlL  410 (510)
T KOG3574|consen  332 VFLKAVPYRLG-GGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLL  410 (510)
T ss_pred             HHHHhhhHHHH-HHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHH
Confidence            0    111111 11111111111111111 00111112221  2233444444566777788899999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhCcc
Q 008185          476 ASALCLSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       476 ~~~~~lg~~lg~~i~g~l~~~~g~~  500 (574)
                      |...|+|+..-..+...+.+.+++.
T Consensus       411 NTLsnLGg~wp~tv~l~l~D~ltv~  435 (510)
T KOG3574|consen  411 NTLSNLGGNWPGTVALWLADGLTVK  435 (510)
T ss_pred             HHHHHhcCCcHHHHHHHhcccCcee
Confidence            9999999998888889999887654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.49  E-value=7.6e-13  Score=140.13  Aligned_cols=186  Identities=17%  Similarity=0.163  Sum_probs=126.5

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHH-hcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAH-NLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICI  189 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~-~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i  189 (574)
                      +|..+.+..+..|.+.+.. +..+..-+|+++ |.+.+.+..|++.+...++..+ .|++|..+.|.   ++-|||++. 
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~---~~~k~Pli~-  107 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT---GSVKKPLIV-  107 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc---CCcccCHHH-
Confidence            5666665666677766654 333333345544 5678888999999999888765 89999999974   334677664 


Q ss_pred             HHHHHHHHHHHh-h--cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHH
Q 008185          190 GVFLQILSWGPL-A--LFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLF  266 (574)
Q Consensus       190 ~~~~~~~~~~~~-~--~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~i  266 (574)
                      +.++++++.++. +  ..+++  ..+.++++|++.|+|.+...+ .-++++|....++|.++++....+..+|.++||.+
T Consensus       108 s~ii~~~g~llY~~l~~~~~~--~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~  184 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPNG--VKYLMLVARILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI  184 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence            666666666555 2  23332  356678889999998766554 46889998888889999987777666666666666


Q ss_pred             HHHhhc--cCC-----------hhHHHHHHHHHHHHHHHHh-hhccccccccc
Q 008185          267 GGYFLL--KTP-----------PTTMFLVFAVLLSLQLAIS-FSAREESLGLA  305 (574)
Q Consensus       267 gg~l~~--~~g-----------wr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~  305 (574)
                      +.++..  ..|           +...-|+.+++..+..++. ++++|.++...
T Consensus       185 q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~  237 (488)
T KOG2325|consen  185 QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGII  237 (488)
T ss_pred             HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcc
Confidence            655432  112           2246677777777766664 57899876653

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.49  E-value=1.6e-13  Score=132.66  Aligned_cols=383  Identities=14%  Similarity=0.015  Sum_probs=204.3

Q ss_pred             HHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhh-hhheeeccccccCCCccchhHhHHHHHHH
Q 008185          118 VLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAK-PLYGILSDALYIGGAHRIPYICIGVFLQI  195 (574)
Q Consensus       118 ~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~-pl~G~lsD~~~~~G~rRk~~l~i~~~~~~  195 (574)
                      +++++..|...+.+ -+. ++..+.+.+.+++.++..++.+++..|-++- .+.|++.||.  +|. |.-.++ -+.+..
T Consensus        47 v~mc~lgfgsyfcyd~p~-alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~--fgi-r~gtii-~~~fv~  121 (459)
T KOG4686|consen   47 VFMCLLGFGSYFCYDAPG-ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRR--FGI-RLGTII-LCIFVF  121 (459)
T ss_pred             HHHHHhcccceeecCCch-hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhh--hhh-hHHHHH-HHHHHH
Confidence            33444444444443 222 2222456667788888899999999987664 4689999973  231 211122 222223


Q ss_pred             HHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008185          196 LSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP  275 (574)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g  275 (574)
                      +.-++.+.-. -...++++++.||+.++|+-...++.+.+.+-.++.+|-+.++++.....-+|..+--.+.+++.+..+
T Consensus       122 ~GqliFa~Gg-i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  122 LGQLIFAAGG-ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             HHHHHHHhch-HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence            3333232221 112478888999998888766666667777777777888888888766666777665555555554311


Q ss_pred             ------------hhHHHH-HHHHHHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHH
Q 008185          276 ------------PTTMFL-VFAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLT  342 (574)
Q Consensus       276 ------------wr~~f~-i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l  342 (574)
                                  --.+|- ......++... ..-+-+.+...+..+++..  ..  +..|  +.+... + .|.+|...+
T Consensus       201 ~~~~~~ghT~LG~~l~~~~~tc~~slical-~lg~~D~rAerilh~e~g~--~G--e~pk--Ltdv~~-f-~ppfw~~~i  271 (459)
T KOG4686|consen  201 RMFPGVGHTLLGLWLCFEVKTCKQSLICAL-SLGLSDDRAERILHLEEGF--LG--EEPK--LTDVNT-F-YPPFWVLVI  271 (459)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHhhhcCc--cc--CCcc--cccccc-c-CccHHHHHH
Confidence                        101111 11111111111 1111121111111000000  00  0000  001101 1 255555444


Q ss_pred             HHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhh
Q 008185          343 WLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILV  422 (574)
Q Consensus       343 ~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~  422 (574)
                      ..++-|....-+.+.-+.++++.+|+|+...+-........+.....+++.+.|++|++-....+.++..+..=..+.+ 
T Consensus       272 icv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-  350 (459)
T KOG4686|consen  272 ICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-  350 (459)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-
Confidence            3333121111122333457788999999888776544444555556777888899887766555544433322211111 


Q ss_pred             hhhhcccCcCcceEEeehhHHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCccc
Q 008185          423 RQINLQFGVPNEVFVLCFAGLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITF  501 (574)
Q Consensus       423 ~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~  501 (574)
                      +.++       .+.    ...+.++.. +..-..+-+++.+.|+++.||+||+.++++|+|-++.|++.|.+.+.-|   
T Consensus       351 t~ls-------Py~----~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g---  416 (459)
T KOG4686|consen  351 TFLS-------PYT----SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG---  416 (459)
T ss_pred             hhcc-------HHH----HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC---
Confidence            1111       010    011111111 1111123456778999999999999999999999999999999887543   


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Q 008185          502 GDYSSLPVGIVIQFLAALLPLIWIHNVPMS  531 (574)
Q Consensus       502 ~~~~~l~~~~li~~~~~ll~l~~~~~vp~~  531 (574)
                       .|..+-.+++++..+++.....++.+.++
T Consensus       417 -~y~~le~ffl~~~~~aL~svgil~~~N~k  445 (459)
T KOG4686|consen  417 -SYDNLEAFFLIIGLMALTSVGILFYLNKK  445 (459)
T ss_pred             -chhhHHHHHHHHHHHHHHHHHHHhheecc
Confidence             35566677777777777666666666543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=99.45  E-value=1.3e-11  Score=129.03  Aligned_cols=371  Identities=13%  Similarity=0.113  Sum_probs=217.3

Q ss_pred             HHHHHHHHhhhcc-chhhhhHHHHHH-hcCCChhHHHHHHHHhhhhhhhhhhheeeccccccC--CCccchhHhHHHHHH
Q 008185          119 LCGLGYWVQGFRC-FPWLALNFHMAH-NLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIG--GAHRIPYICIGVFLQ  194 (574)
Q Consensus       119 ~~~~~~f~~~~~~-~~~~~~~~~l~~-~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~~~--G~rRk~~l~i~~~~~  194 (574)
                      ++.+.|+.||+.- +....+|+.+++ .-++|-++.+. .|+...|+.++.+|+|+.|.+..+  | |||.|++-...+.
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~-fSla~~PfSlKlLWaPiVDs~y~~~~G-RRKSWiiP~Q~l~   81 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAI-FSLASYPFSLKLLWAPIVDSVYSKRIG-RRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHhee-eeeeechhHHHHhhhhhhhhhcccccC-CcchhhhHHHHHH
Confidence            4677899999975 555567766665 13678888874 577778999999999999986443  5 8888988777766


Q ss_pred             HHHHHHhhcccC---------------cc---c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHH
Q 008185          195 ILSWGPLALFPV---------------AA---K--ALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFM  254 (574)
Q Consensus       195 ~~~~~~~~~~~~---------------~~---~--~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~  254 (574)
                      .+.++.++...+               ..   .  ....+..++++..+-++..|+++|+..-.+..++.++.+..    
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~AST----  157 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYAST----  157 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHH----
Confidence            666555544330               00   0  11223445555566778889999999988888777766544    


Q ss_pred             HHHHHHHHHHHHHH--Hhhcc------CChh--------------HHHHHHHHHHHHHHH-Hhhhccccccccc----cc
Q 008185          255 AAASGGILGNLFGG--YFLLK------TPPT--------------TMFLVFAVLLSLQLA-ISFSAREESLGLA----QV  307 (574)
Q Consensus       255 ~~~~G~~igp~igg--~l~~~------~gwr--------------~~f~i~ai~~~~~~~-~~~~lpEt~~~~~----~~  307 (574)
                      +..+|.-+|-+++-  ++.-+      .-+|              .-||  +++.+++.+ +.++-+|.+....    +.
T Consensus       158 cqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fw--g~~~l~~T~~v~~~k~E~~~~~~~~~~~~  235 (544)
T PF13000_consen  158 CQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFW--GWVFLIVTILVAFFKKEKPHSESLPKIEP  235 (544)
T ss_pred             HHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHH--HHHHHHHHHHHheEeecccccccCccccc
Confidence            44455555555543  22211      0011              1222  223333333 3455666542211    00


Q ss_pred             -chhcc----------hh----hhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchh
Q 008185          308 -SYQNV----------AS----KSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSV  372 (574)
Q Consensus       308 -~~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~  372 (574)
                       .+.+.          +.    ......+++..+.+++.++-|.+....+..+. .-+..+...+....-.-..|++.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~-~KigF~a~da~T~LKLlEkG~~KE~  314 (544)
T PF13000_consen  236 INKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLT-AKIGFQANDAVTSLKLLEKGLSKED  314 (544)
T ss_pred             cccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHH-HHhccccchhhhHHHHHHcCCCHHH
Confidence             00000          00    01123456667788888898888776666555 2333333443333333469999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCch---------------------------hHHHHHHHHHHHHHhHHHHhhhhh
Q 008185          373 IGMSRVIGQSMLLSLTVFYDRYWKKVPLR---------------------------KLVGAVQILYASSLLLDLILVRQI  425 (574)
Q Consensus       373 ~gl~~i~~~ig~lig~~l~~~l~~r~~~r---------------------------~ll~~~~ll~~~~~l~~l~l~~~~  425 (574)
                      .++..++..-..++..++.+|+.+.....                           ++...+...-.+..++....+...
T Consensus       315 LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~f  394 (544)
T PF13000_consen  315 LALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFF  394 (544)
T ss_pred             hHHHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeC
Confidence            88877766666777777778876543310                           111122211111111111111111


Q ss_pred             hcccCcCcceEE--eehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          426 NLQFGVPNEVFV--LCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       426 ~~~~~~~~~~~~--l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      +..-.++..+|.  +....+.++....++++.+++-+++.+|..-||++.+.|++.|+|+.....+.-.+.|.+-
T Consensus       395 P~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT  469 (544)
T PF13000_consen  395 PSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT  469 (544)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence            101112222222  2233445555567888888999999999999999999999999999988888777877663

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.45  E-value=1.7e-13  Score=147.20  Aligned_cols=216  Identities=14%  Similarity=0.035  Sum_probs=157.7

Q ss_pred             cccCccccccccccccccCCcCCCCCCcccccccccccccccchhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCCh
Q 008185           71 LVTTTESSSVSLKESKRLGSWAGGGGDEERRRDFGEVGINNFNKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHP  149 (574)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~v~w~~~~d~~np~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~  149 (574)
                      +|+|++||+||++|.+||.+-.++++.++.++.|++..  +.+.++|. +.+..|+..+.. +.....|.|+++.+|.+.
T Consensus       217 ~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i--~ts~~vwa-i~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v  293 (466)
T KOG2532|consen  217 SDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAI--LTSPPVWA-IWISAFGGNWGFYLLLTYLPTYLKEVLGFDV  293 (466)
T ss_pred             cCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHH--HcCHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHhCCCh
Confidence            69999999999999999988877777666445777765  56777777 677777777765 555556669999999999


Q ss_pred             hHHHHHHHHhhhhh-hhhhhheeeccccccC----CCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHH--HH
Q 008185          150 STLQLVQNSGNLPM-VAKPLYGILSDALYIG----GAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLL--SN  222 (574)
Q Consensus       150 ~~~~l~~s~~~l~~-~~~pl~G~lsD~~~~~----G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l--~~  222 (574)
                      .+.|++.++..+.. .++.++|.++|+...+    ..+||.+-.++....++++.++++.++.....  .+++..+  +.
T Consensus       294 ~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~--a~~~l~~~~~~  371 (466)
T KOG2532|consen  294 RETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLL--AVILLTIAIGL  371 (466)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchH--HHHHHHHHHHH
Confidence            99999999998865 4599999999987442    12667777777788888888888887543211  1222222  22


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc---CChhHHHHHHHHHHHHHHHHh
Q 008185          223 LGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK---TPPTTMFLVFAVLLSLQLAIS  294 (574)
Q Consensus       223 ~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~---~gwr~~f~i~ai~~~~~~~~~  294 (574)
                      .|.......  ....|.. |++.+.++++.+....+.++++|.+.|.+.+.   ..||++|++.+++..+..++.
T Consensus       372 ~g~~~~Gf~--~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  372 SGFNISGFY--KNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             cccchhhhH--hhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence            222222111  1123322 46778999999999999999999999999842   379999999998887776654

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.43  E-value=4.6e-11  Score=128.09  Aligned_cols=359  Identities=16%  Similarity=0.081  Sum_probs=201.0

Q ss_pred             hhHHHHHHHHHHHhhhccchhhhhHHHHHHhcCCCh-hHHHHHHHHh-----hhhhhhhhhheeeccccccCCCccchhH
Q 008185          114 KQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHP-STLQLVQNSG-----NLPMVAKPLYGILSDALYIGGAHRIPYI  187 (574)
Q Consensus       114 ~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~-~~~~l~~s~~-----~l~~~~~pl~G~lsD~~~~~G~rRk~~l  187 (574)
                      +.....+.+-.|..++.+..........+..++-+. .+.+......     ..+....|+.|.+||+     ++||..+
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-----~grk~~L   95 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-----YGRKVVL   95 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-----hhhhhhH
Confidence            334444444445655554322332223333333221 2223333333     2344558999999998     4788877


Q ss_pred             hHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHH
Q 008185          188 CIGVFLQILSWGPLALFPVAAKALPNLMACVLLS-NLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLF  266 (574)
Q Consensus       188 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~i  266 (574)
                      ......+++.-..+.+..      +++++  ... ..+.+.......++++|....++|...+++.+.....+..+||.+
T Consensus        96 ~~~~~~~~l~~~~~~~~~------~~~~~--~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~  167 (463)
T KOG2816|consen   96 LLPLFGTILPALCLLFQG------YWFFL--LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPAL  167 (463)
T ss_pred             HHHHHHHHHhHHHHHHHH------HHHhh--hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHH
Confidence            766665555544433332      11222  111 112222233446779999999999999999999899999999999


Q ss_pred             HHHhhccCChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcch----hhhhhhhHHHHHHHHHHHHcchhhHHHH
Q 008185          267 GGYFLLKTPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVA----SKSIAQSIKKQFSDLIATIGEESISYPL  341 (574)
Q Consensus       267 gg~l~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~  341 (574)
                      ++++.+..|.-.+|++.++...+..+.. +++||+..+..+.. .+..    .+.......+..+.....-.+|..+..+
T Consensus       168 ~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~  246 (463)
T KOG2816|consen  168 GGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-ATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLL  246 (463)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-ccccccCCCcccchhhhhhhhhhcccCCCccchHHH
Confidence            9999999999999999988887777664 67999865543220 0000    0000111222222222211233344333


Q ss_pred             HHHHhHhhhc-ccccccceeehccccCCCchhHHHHHHHHHHHHHHH-HHHHHHHHhcCCchhHHHHHHHHHHHHHhHHH
Q 008185          342 TWLVASVAMV-PVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSL-TVFYDRYWKKVPLRKLVGAVQILYASSLLLDL  419 (574)
Q Consensus       342 l~~~l~~~~~-~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig-~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l  419 (574)
                      ...++.+... .......++|....++|++.+.+.......+...++ ..+...+.+..+.+++...+.+...+. ....
T Consensus       247 l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~-~~~~  325 (463)
T KOG2816|consen  247 LVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQ-LLLF  325 (463)
T ss_pred             HHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHH-HHHH
Confidence            3333322211 111223466777889999999986544433333333 444456666777777555554433322 2211


Q ss_pred             HhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008185          420 ILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLT  497 (574)
Q Consensus       420 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~  497 (574)
                      .+..         ..|.... ..+...+..+......++++....++++|.++++...+..++..++|.+-+.++...
T Consensus       326 af~~---------~~w~~~~-~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  326 AFAT---------ETWMMFA-AGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HHhc---------cchhhhH-HHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            1111         1121111 111111222222223466788899999999999999999999999999888877644

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.28  E-value=9e-10  Score=115.90  Aligned_cols=168  Identities=16%  Similarity=0.097  Sum_probs=120.3

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcC----CChhHHHHHHHHhh-hhhhhhhhheeeccccccCCCccchhHhHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLS----LHPSTLQLVQNSGN-LPMVAKPLYGILSDALYIGGAHRIPYICIGVFL  193 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~----~s~~~~~l~~s~~~-l~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~  193 (574)
                      +...-+..-+.+ -....+..|+..+++    +|.+++.-+.+.+. +.|....+.|+++||+    .++|..+.+++++
T Consensus        26 if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~----LG~~~tI~lGail  101 (498)
T COG3104          26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRV----LGTRRTIVLGAIL  101 (498)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHH
Confidence            555556666654 222333345655566    99988887777764 4566555789999997    3555666778888


Q ss_pred             HHHHHHHhhccc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          194 QILSWGPLALFP-VAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQK--NGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       194 ~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~--~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      ..+.-++++... ..   ...+.+...+..+|.+..-.....++.|..++  .+|-...++++++.++|+.++|++.+++
T Consensus       102 ~~iGh~~L~~~~~~~---~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~  178 (498)
T COG3104         102 MAIGHLVLAISSVSG---PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLL  178 (498)
T ss_pred             HHHHHHHHhcccccc---ccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHH
Confidence            888888887774 22   23355666666677777666667788999865  3466667888899999999999999999


Q ss_pred             hccCChhHHHHHHHHHHHHHHHHh
Q 008185          271 LLKTPPTTMFLVFAVLLSLQLAIS  294 (574)
Q Consensus       271 ~~~~gwr~~f~i~ai~~~~~~~~~  294 (574)
                      .++.||...|.+.++-..+.++..
T Consensus       179 ~~~~g~~~gF~~aavGm~~gl~~f  202 (498)
T COG3104         179 AINYGWHVGFGLAAVGMIIGLVIF  202 (498)
T ss_pred             HHhhCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999876665555543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.19  E-value=2.5e-10  Score=124.14  Aligned_cols=175  Identities=10%  Similarity=-0.069  Sum_probs=108.1

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      ++.++. +++.+++..... ....-.+.|+++++|++..+.++..++..++..+ .+++|+++||+   + +||..+. .
T Consensus       257 ~~~~~~-~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~---g-~r~~~~~-~  330 (467)
T PRK09556        257 NPVIWL-LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA---N-GRRALVA-C  330 (467)
T ss_pred             ChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C-CCchHHH-H
Confidence            444544 445554443332 2222344578888999999999988888777655 78899999986   3 4444332 2


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHH-HHHHHHHHHHH
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAAS-GGILGNLFGGY  269 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~-G~~igp~igg~  269 (574)
                      .....+...++.....+  +...+.+++++.+++.............|..|++.||.+.++.+....+ |..++|.+.|+
T Consensus       331 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~  408 (467)
T PRK09556        331 IALALIIFTLGVYQHAT--SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGM  408 (467)
T ss_pred             HHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence            22222222111111111  1223334444443322111112234567999999999999999888885 77999999999


Q ss_pred             hhc------------cCChhHHHHHHHHHHHHHHHHhh
Q 008185          270 FLL------------KTPPTTMFLVFAVLLSLQLAISF  295 (574)
Q Consensus       270 l~~------------~~gwr~~f~i~ai~~~~~~~~~~  295 (574)
                      +.+            ..||+..|++.++..++..+..+
T Consensus       409 i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        409 IADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            998            57899999998777666655543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.18  E-value=5.6e-10  Score=122.19  Aligned_cols=163  Identities=14%  Similarity=0.124  Sum_probs=106.4

Q ss_pred             hhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHH-HHHHhhcccCccchHHH
Q 008185          136 ALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQIL-SWGPLALFPVAAKALPN  213 (574)
Q Consensus       136 ~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~-~~~~~~~~~~~~~~~~~  213 (574)
                      ..+.++++++|.+..+.++......++..+ .|+.|+++||+     +||+.+.++.+...+ +...+.....+  +...
T Consensus       272 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  344 (490)
T PRK10642        272 YMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-----GRRPFVILGSVALFVLAIPAFILINSN--VIGL  344 (490)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHhCC--CHHH
Confidence            445577777899988877776666666555 77899999985     455555555443222 22211111111  1334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHH
Q 008185          214 LMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKT-PPTTMFLVFAVLLSLQLA  292 (574)
Q Consensus       214 l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~-gwr~~f~i~ai~~~~~~~  292 (574)
                      +++.+++.+++.+.......+++.|..|++.|+.++++.+....+++.++|.+.|++.+.. +|+..+++.++..++..+
T Consensus       345 ~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~  424 (490)
T PRK10642        345 IFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI  424 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            4556666555444443344567789999999999998754445566788999999888754 478888877766666666


Q ss_pred             Hhhhccccccccc
Q 008185          293 ISFSAREESLGLA  305 (574)
Q Consensus       293 ~~~~lpEt~~~~~  305 (574)
                      ..+++||++.+..
T Consensus       425 ~~~~~pes~~~~~  437 (490)
T PRK10642        425 TGVTMKETANRPL  437 (490)
T ss_pred             HHHHhccccCCCC
Confidence            5677899987644

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.18  E-value=7.8e-09  Score=107.21  Aligned_cols=362  Identities=14%  Similarity=0.029  Sum_probs=188.7

Q ss_pred             chhHHHHHHHHHHHhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHH
Q 008185          113 NKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGV  191 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~  191 (574)
                      +|.++..+++..+..++.-+.+.++..+..+.+| +...+-|..-++++.++ ++...-|+.|+.   |  -|.-.+++.
T Consensus        43 RW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~---G--LR~a~llgt  116 (480)
T KOG2563|consen   43 RWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF---G--LRTALLLGT  116 (480)
T ss_pred             HhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc---c--hHHHHHHHH
Confidence            7888888888888888776777788778888888 66666777777766554 366677899974   3  444455566


Q ss_pred             HHHHHHHHHhhcccCccchHHHHHHHHHHHHHHH---HHHHHHH---HHHHHhhh-cccCccchHHHHHHHHHHHHHHHH
Q 008185          192 FLQILSWGPLALFPVAAKALPNLMACVLLSNLGA---SITEVAK---DALVAEYG-QKNGIVGLQSYAFMAAASGGILGN  264 (574)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~---~~~~~~~---~a~i~d~~-~~~~rg~~~s~~~~~~~~G~~igp  264 (574)
                      .+..+...+=......  ...... -|.+.-.|.   +.+.+..   ++-+++.+ +++||..+.++..++..+|.++|-
T Consensus       117 ~ln~iGa~Ir~iss~p--~v~~~f-~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~  193 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLP--FVPPLF-RRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF  193 (480)
T ss_pred             HHHHHHHHHhhhccCc--cccccc-hhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence            6555544433322211  001111 112222222   2222222   23355554 678998888877776667777777


Q ss_pred             HHHHHhhccC------ChhH--HHHHHHHHHHHHHHHh-hhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcch
Q 008185          265 LFGGYFLLKT------PPTT--MFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEE  335 (574)
Q Consensus       265 ~igg~l~~~~------gwr~--~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (574)
                      ++.-.++.+-      .|-.  +|+..+++.++.++.. +.-+|+++.+....+.       ...-....+.+++.++++
T Consensus       194 llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~-------~~~~~~f~~si~~~~~n~  266 (480)
T KOG2563|consen  194 LLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQA-------ALQDASFPKSIKSCFKNR  266 (480)
T ss_pred             hccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHh-------hhhcCcHHHHHHHHHcCc
Confidence            7666665432      3544  3444444444433333 3334433222111100       000011345666778888


Q ss_pred             hhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHH
Q 008185          336 SISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVG-AVQILYASS  414 (574)
Q Consensus       336 ~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~-~~~ll~~~~  414 (574)
                      .+...++...+..++++...+.+. -....-|.+....|+......++.++++.+.+.+.||.+.-+..+ +........
T Consensus       267 ~F~il~~~ygi~~g~F~~l~~~l~-~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  267 QFIILAICYGIGLGLFNSLSTLLN-LALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHhh-hccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            876554433332222222221111 011234555567777777777777777788888888766544433 222222222


Q ss_pred             HhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008185          415 LLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGL  493 (574)
Q Consensus       415 ~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l  493 (574)
                      .+....+    ..  ...+.+.+.....+.++ ......|. .-+..|..-|..||+-.|+.+...++-+.+=.++-+.+
T Consensus       346 ~~~l~~~----t~--~~~~~viv~~t~~~~g~-~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~  418 (480)
T KOG2563|consen  346 TLMLLTC----TL--FLGDSVIVFTTCGLLGF-FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGIL  418 (480)
T ss_pred             HHHHHHh----hc--cCCceEehhhhHHHHHH-hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHH
Confidence            1211111    11  11122222111222222 22334454 33456777888899999998887776655555555555


Q ss_pred             HHhhC
Q 008185          494 ASLTG  498 (574)
Q Consensus       494 ~~~~g  498 (574)
                      .+-.+
T Consensus       419 ~~~~~  423 (480)
T KOG2563|consen  419 AEDLG  423 (480)
T ss_pred             hhccC
Confidence            55443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.17  E-value=8.9e-10  Score=116.99  Aligned_cols=155  Identities=9%  Similarity=0.053  Sum_probs=107.3

Q ss_pred             hhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHH
Q 008185          136 ALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNL  214 (574)
Q Consensus       136 ~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l  214 (574)
                      ..+.++++++|.++.+.+++.+...+...+ .+++|+++||+     +||+.+..+.....+.+...... ++   ...+
T Consensus       238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~  308 (393)
T PRK15011        238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-----GKRFLMRVAAVAGVCFYAGMLMA-HS---PAIL  308 (393)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHH-hh---HHHH
Confidence            345577888999999999887766554444 67899999985     34444444444433333322222 22   3334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS  294 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~  294 (574)
                      ++.+++.+++.+...........|..| ++||.++++++....+|..+||.++|++.+..||++.|++.+++.++..++.
T Consensus       309 l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK15011        309 LGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCL  387 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            556666555544443344455677776 5689999998888899999999999999998999999999887777766666


Q ss_pred             hhcccc
Q 008185          295 FSAREE  300 (574)
Q Consensus       295 ~~lpEt  300 (574)
                      +++||+
T Consensus       388 ~~~~~~  393 (393)
T PRK15011        388 LRIKDV  393 (393)
T ss_pred             HhhcCC
Confidence            777764

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.11  E-value=7.2e-12  Score=137.35  Aligned_cols=377  Identities=15%  Similarity=0.123  Sum_probs=2.5

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      |+.+++ +++..+.|.+.. .....+. .+++.|+++.++.|++.+.+-++..+ ..+.+++.+|     .+|.+|+..+
T Consensus         2 k~fl~~-~~~~~~~q~~~~g~~~~~lt-tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-----~hrprwig~g   74 (539)
T PF03137_consen    2 KWFLVF-LCLLGLFQMMVSGYVNSSLT-TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-----GHRPRWIGIG   74 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eehHHH-HHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCcceeeec
Confidence            344444 555566665444 3334443 56777999999999999999887655 6667788876     3777788888


Q ss_pred             HHHHHHHHHHhhcccCcc----------------------------------------------chHHHHHHHHHHHHHH
Q 008185          191 VFLQILSWGPLALFPVAA----------------------------------------------KALPNLMACVLLSNLG  224 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~l~~~~~l~~~g  224 (574)
                      .++.+++.+++++.+-..                                              ..+..++++.++.|+|
T Consensus        75 ~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG  154 (539)
T PF03137_consen   75 ALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIG  154 (539)
T ss_dssp             -----------------------------------------------------------------------------SSS
T ss_pred             HHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhcc
Confidence            888888777665421000                                              0012233345566888


Q ss_pred             HHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc----------------CChhHH--HH----H
Q 008185          225 ASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK----------------TPPTTM--FL----V  282 (574)
Q Consensus       225 ~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~----------------~gwr~~--f~----i  282 (574)
                      .+...+..-+++-|..++++.+...|+......+||++|-++|+.+...                .+.||+  .|    +
T Consensus       155 ~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli  234 (539)
T PF03137_consen  155 ATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLI  234 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHH
Confidence            8888888889999999988888888999999999999999999977642                123332  23    3


Q ss_pred             HHHHHHHHHHHhhhcccccccc----ccc--c--hhc-chhh---------hhhhhHHHHHHHHHHHHcchhhHHHHHHH
Q 008185          283 FAVLLSLQLAISFSAREESLGL----AQV--S--YQN-VASK---------SIAQSIKKQFSDLIATIGEESISYPLTWL  344 (574)
Q Consensus       283 ~ai~~~~~~~~~~~lpEt~~~~----~~~--~--~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~l~~  344 (574)
                      .+++.++..+..++.|++-+..    ...  +  +++ .+++         ......++..+.++++++||.+....+-.
T Consensus       235 ~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~  314 (539)
T PF03137_consen  235 CGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAG  314 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHH
Confidence            3333333333333444332211    000  0  000 0000         01123445556677888999876655544


Q ss_pred             HhHhhhcccccccceeehccccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHhH--HH
Q 008185          345 VASVAMVPVLSGSMFCYQTQCLNINPSVIGMSR-VIGQSMLLSLTVFYDRYWKKVP--LRKLVGAVQILYASSLLL--DL  419 (574)
Q Consensus       345 ~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~-i~~~ig~lig~~l~~~l~~r~~--~r~ll~~~~ll~~~~~l~--~l  419 (574)
                      .........+.+..|-|...+++.++...+++. +....+..+|.++.+.+.||+.  .|++..++.+...+..+.  ..
T Consensus       315 ~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~  394 (539)
T PF03137_consen  315 VFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPL  394 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            443333444555556678888999988776652 3333344445555555555543  334333332222221111  11


Q ss_pred             Hhhh--h-----hhccc-----------------------------Cc-C-c---ceE-EeehhHHHHHHHHhhHHHHHH
Q 008185          420 ILVR--Q-----INLQF-----------------------------GV-P-N---EVF-VLCFAGLAETLAQFKLLPFSM  457 (574)
Q Consensus       420 ~l~~--~-----~~~~~-----------------------------~~-~-~---~~~-~l~~~~l~~~~~~~~~~p~~~  457 (574)
                      ++..  .     .+...                             +. + +   .+. .+....+..++.....+|...
T Consensus       395 ~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~  474 (539)
T PF03137_consen  395 FFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTL  474 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhe
Confidence            1111  0     00000                             00 0 0   011 111111222233445566666


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHH-hHHHHHHHHHHHHHHh
Q 008185          458 LLARLCPQGCEGSLTSFSASALC-LSSIASGFLGVGLASL  496 (574)
Q Consensus       458 l~~~~~p~~~~gt~~gl~~~~~~-lg~~lg~~i~g~l~~~  496 (574)
                      ..-+.+|+++|+.+.|+...+.. +|..-||++.|.+.|.
T Consensus       475 i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  475 ITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ----------------------------------------
T ss_pred             eeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            66688899999999999887765 5667788888887774

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.10  E-value=9.1e-10  Score=117.99  Aligned_cols=149  Identities=11%  Similarity=0.079  Sum_probs=109.4

Q ss_pred             hHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHH
Q 008185          150 STLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASIT  228 (574)
Q Consensus       150 ~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~  228 (574)
                      .+.+...++..+..++ .++.|+++||+     +||+.+.++.++..+.+.++.....+......+++..++.+++.+..
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~-----g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~  325 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRF-----GIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFF  325 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHH
Confidence            5567777777665544 67889999985     56667777777766666555553222111233455677777777666


Q ss_pred             HHHHHHHHHhhhcccCccchHHHHH-HHHHHHHHHHHHHHHHhhcc------CChhHHHHHHHHHHHHHHHHh-hhcccc
Q 008185          229 EVAKDALVAEYGQKNGIVGLQSYAF-MAAASGGILGNLFGGYFLLK------TPPTTMFLVFAVLLSLQLAIS-FSAREE  300 (574)
Q Consensus       229 ~~~~~a~i~d~~~~~~rg~~~s~~~-~~~~~G~~igp~igg~l~~~------~gwr~~f~i~ai~~~~~~~~~-~~lpEt  300 (574)
                      .+....++.|..|+++|++++++.+ ....+|.++||+++|++.+.      .||+++|++.+++.++..++. +++||+
T Consensus       326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            6666788899999999999999986 56779999999999999886      469999999988887776664 578887


Q ss_pred             ccc
Q 008185          301 SLG  303 (574)
Q Consensus       301 ~~~  303 (574)
                      ...
T Consensus       406 ~~~  408 (418)
T TIGR00889       406 HNA  408 (418)
T ss_pred             ccC
Confidence            543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.09  E-value=5.4e-10  Score=98.98  Aligned_cols=128  Identities=27%  Similarity=0.337  Sum_probs=98.9

Q ss_pred             hhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008185          164 VAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKN  243 (574)
Q Consensus       164 ~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~  243 (574)
                      ...|+.|+++||+     +||+.+..+.....++........+    .+.+.+.+++.+++.+.......+++.|..+++
T Consensus        13 ~~~~~~g~~~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880        13 IYSPLSGLLTDRF-----GRKPVLLVGLFIFVLSTAMFALSSN----ITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             HHHhhHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            3478899999985     4555555566665666555544432    455667788888888877777788899999999


Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh-hhcccc
Q 008185          244 GIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS-FSAREE  300 (574)
Q Consensus       244 ~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt  300 (574)
                      +|++.+++.+....+|..+||.+++.+.+..+|++.|++.++...+..+.. ++.||+
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            999999999999999999999999999998999999999887777666654 345653

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.07  E-value=1.4e-09  Score=116.46  Aligned_cols=146  Identities=8%  Similarity=-0.026  Sum_probs=105.8

Q ss_pred             CCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHH
Q 008185          146 SLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLG  224 (574)
Q Consensus       146 ~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g  224 (574)
                      +.+..+.+++.++..+..++ .+++|+++||+     +||+.+..+.++..+.+.+.++.. +   .+.+++.+++.+++
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~l~~~~~~l~~~~~-~---~~~~~~~~~l~g~~  328 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-----GAKNALLLAGTIMAVRIIGSGFAT-G---PLEVSILKLLHAFE  328 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcchhhHHHHHHHHHHHHHHHhcc-c---HHHHHHHHHHHHHH
Confidence            56777888888888776554 77899999985     344455556666666666555543 2   34456667777777


Q ss_pred             HHHHHHHHHHHHHhhhcccCccchHHH-HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh-hhcccc
Q 008185          225 ASITEVAKDALVAEYGQKNGIVGLQSY-AFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS-FSAREE  300 (574)
Q Consensus       225 ~~~~~~~~~a~i~d~~~~~~rg~~~s~-~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt  300 (574)
                      .+........++.|..+++.++...+. ++....+|.++||.++|++.+..|||.+|++.+++.++..++. +.++++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        329 VPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            666555556777888888888776654 5667789999999999999999999999999888877666554 345553

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.06  E-value=2.3e-09  Score=112.15  Aligned_cols=170  Identities=17%  Similarity=0.069  Sum_probs=106.3

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      ..+..+...... ......+.++++++|.+..+.++..+...+...+ .++.|+++||+   + ||+..+........++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~-~~~~~~~~~~~~~~~~  295 (399)
T TIGR00893       220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL---L-RRGKSLVFARKTAIIA  295 (399)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---h-hcccchhHHHHHHHHH
Confidence            333344333332 3333445577888899999999988887776554 77899999986   2 3331111111111111


Q ss_pred             ---HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 008185          198 ---WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKT  274 (574)
Q Consensus       198 ---~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~  274 (574)
                         .................+....+...+.+ ..+...+++.|..++++|+.++++.+....+|..+||.+.|++.+..
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~  374 (399)
T TIGR00893       296 GLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT  374 (399)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence               11111111101112222223333333333 44556788899999999999999999999999999999999999988


Q ss_pred             C-hhHHHHHHHHHHHHHHHHh
Q 008185          275 P-PTTMFLVFAVLLSLQLAIS  294 (574)
Q Consensus       275 g-wr~~f~i~ai~~~~~~~~~  294 (574)
                      | |++.|++.++..++..+..
T Consensus       375 g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       375 GSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             CchhHHHHHHHHHHHHHHHHH
Confidence            8 9999999887776665543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.04  E-value=4e-09  Score=114.18  Aligned_cols=162  Identities=12%  Similarity=-0.048  Sum_probs=99.6

Q ss_pred             hhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccch-hHhHHHHHHHHHHHHhhcccCccchHH
Q 008185          135 LALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIP-YICIGVFLQILSWGPLALFPVAAKALP  212 (574)
Q Consensus       135 ~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~-~l~i~~~~~~~~~~~~~~~~~~~~~~~  212 (574)
                      ...|.+++++.|.+..+.++...++.++..+ .++.|+++||+   +.+||. ..++...+..++..++.....+  ...
T Consensus       274 ~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~---~~~r~~~~~~~~~~l~~~~~~~~~~~~~~--~~~  348 (452)
T PRK11273        274 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV---FRGNRGATGVFFMTLVTIATIVYWLNPAG--NPT  348 (452)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCCcchHHHHHHHHHHHHHHHHHHhccc--ChH
Confidence            3455678888899999998888777776655 77899999985   213332 2222222222222222222111  122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHH-HHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 008185          213 NLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGI-LGNLFGGYFLLKTPPTTMFLVFAVLLSLQL  291 (574)
Q Consensus       213 ~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~-igp~igg~l~~~~gwr~~f~i~ai~~~~~~  291 (574)
                      ..+++.++.+.+.............|..|+++||.++++.+....+|.. +||.++|++.+..||++.|+++++..++..
T Consensus       349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~  428 (452)
T PRK11273        349 VDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV  428 (452)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            2223333322222111122234567899999999999998887777754 589999999999999999999888776665


Q ss_pred             HHhh--hccccc
Q 008185          292 AISF--SAREES  301 (574)
Q Consensus       292 ~~~~--~lpEt~  301 (574)
                      +...  ..+|++
T Consensus       429 ~~~~~~~~~~~~  440 (452)
T PRK11273        429 ILLIVVMIGEKR  440 (452)
T ss_pred             HHHHHHhccccc
Confidence            5543  344543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.04  E-value=1.8e-09  Score=117.32  Aligned_cols=218  Identities=14%  Similarity=0.009  Sum_probs=120.0

Q ss_pred             cccCccccccccccccccCCcCCCCCCcccccccccccccccchhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCCh
Q 008185           71 LVTTTESSSVSLKESKRLGSWAGGGGDEERRRDFGEVGINNFNKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHP  149 (574)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~v~w~~~~d~~np~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~  149 (574)
                      .|+|+.|+.++++|++++.+-..+++.+.+...+.+.   .+++...+.+.+.+++..+.. ....-+|.++++++|.+.
T Consensus       220 ~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~  296 (465)
T TIGR00894       220 ADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKA---IPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSG  296 (465)
T ss_pred             cCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHH---HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCh
Confidence            3778888888777766653321111111111122221   224444444556665555443 223334557888899999


Q ss_pred             hHHHHHHHHhhhhhhh-hhhheeeccccccCCCccch-h--Hh--HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH
Q 008185          150 STLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIP-Y--IC--IGVFLQILSWGPLALFPVAAKALPNLMACVLLSNL  223 (574)
Q Consensus       150 ~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~-~--l~--i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~  223 (574)
                      .+.++..++..+...+ .++.|+++||...++..++. .  +.  ++.....+..........+   ....+++..+.+.
T Consensus       297 ~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~  373 (465)
T TIGR00894       297 KENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAA---FYLTIIILTLANA  373 (465)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHH
Confidence            9999988887776544 78899999986322211111 1  11  1111111111111111111   2222233333333


Q ss_pred             HHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccC---ChhHHHHHHHHHHHHHHHHhh
Q 008185          224 GASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKT---PPTTMFLVFAVLLSLQLAISF  295 (574)
Q Consensus       224 g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~---gwr~~f~i~ai~~~~~~~~~~  295 (574)
                      +.+...........|..+ +.+|.++++.+....+|+.++|.+.|++.+..   +|+..|++.++..++..++..
T Consensus       374 ~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       374 VSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             HhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            322222222233446655 47899999999999999999999999887643   388999998877766655543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.03  E-value=7.7e-09  Score=108.37  Aligned_cols=153  Identities=14%  Similarity=0.093  Sum_probs=106.2

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      .+.++.+++|.++.+.++..+...+... ..++.|+++||+     +||+.+.++.+...+........ ++   .+.++
T Consensus       222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~  292 (375)
T TIGR00899       222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-----GKRRLMLLAALAGVAFYTGLAAD-NS---LWALL  292 (375)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHH-HH---HHHHH
Confidence            4456777899999999987766554333 367889999985     45555554544444333333222 22   33344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISF  295 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~  295 (574)
                      +.+++.+++.+...+.....+.|..|+ +++.++++++....+|..+||.++|.+.+..||+..|++.++..++..+..+
T Consensus       293 ~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       293 MLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            556666666555555555667787764 5678899998888899999999999999999999999999887777666666


Q ss_pred             hccc
Q 008185          296 SARE  299 (574)
Q Consensus       296 ~lpE  299 (574)
                      ++||
T Consensus       372 ~~~~  375 (375)
T TIGR00899       372 LIKD  375 (375)
T ss_pred             eecC
Confidence            6654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.02  E-value=3.1e-09  Score=110.87  Aligned_cols=142  Identities=19%  Similarity=0.182  Sum_probs=102.6

Q ss_pred             HHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHH
Q 008185          142 AHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLL  220 (574)
Q Consensus       142 ~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  220 (574)
                      .+++|.+..+.++..++..+...+ .++.|+++||+     +||+.+.++..+..++..++...+...  ...+++..++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  304 (377)
T TIGR00890       232 GQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-----GRQKTMSIVFGISAVGMAAMLFIPMLN--DVLFLATVAL  304 (377)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhHHHHHHHHHHHHHHHcccch--hHHHHHHHHH
Confidence            345889988888888887776655 77899999985     455556556666666655554443221  1112233444


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 008185          221 SNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQ  290 (574)
Q Consensus       221 ~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~  290 (574)
                      .+++.+.......+++.|..++++|+.++++.+....+|..+||.++|.+.+..||++.|++.+++.++.
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            4444444444456778899999999999999999999999999999999999999999999987766554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.99  E-value=4.3e-09  Score=110.43  Aligned_cols=148  Identities=21%  Similarity=0.122  Sum_probs=98.4

Q ss_pred             hhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHh-hcccCccchH
Q 008185          134 WLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPL-ALFPVAAKAL  211 (574)
Q Consensus       134 ~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~-~~~~~~~~~~  211 (574)
                      ....+.++++++|.+..+.+...+...+...+ .++.|+++||+   | ||+.++..+.+....++... ......  ..
T Consensus       239 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~---g-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  312 (394)
T TIGR00883       239 TTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI---G-RRPVLIIFTVLAALLAVPLLMALLDSG--SF  312 (394)
T ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-hHHHHHHHHHHHHHHHHHHHHHHhcCC--ch
Confidence            33455577777899999999888777776544 78899999985   2 44433322322222221211 121111  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHH-HHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHH
Q 008185          212 PNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYA-FMAAASGGILGNLFGGYFLLKTP-PTTMFLVFAVLL  287 (574)
Q Consensus       212 ~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~-~~~~~~G~~igp~igg~l~~~~g-wr~~f~i~ai~~  287 (574)
                      ..+++..++.+++.+.......+++.|..|+++|+.++++. ..+..+|..++|.++|++.+..| |++.++..++..
T Consensus       313 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       313 TLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            33344455555665555666778899999999999998874 45566899999999999999888 998887776544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.99  E-value=8.6e-09  Score=110.24  Aligned_cols=157  Identities=11%  Similarity=0.066  Sum_probs=115.1

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      .+.+.++.+|.++.+.+++.+...++..+ .++.|+++|+.     +++..+..+....++.+.++...++    ...+.
T Consensus       246 ~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~  316 (417)
T PRK10489        246 YPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-----RPGLLMLLSTLGSFLAVGLFGLMPM----WILAV  316 (417)
T ss_pred             hHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-----CcchHHHHHHHHHHHHHHHHHccch----HHHHH
Confidence            44577777899999999988888777655 66788999862     4444455555555555555444332    33344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh-
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS-  294 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~-  294 (574)
                      ++.++.+++.+...+...+++.|..|++.||++++++.....+|..+||.++|++.+..|++..+++.++...+..++. 
T Consensus       317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  396 (417)
T PRK10489        317 LCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLL  396 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence            5555666776666666667888999988999999999998999999999999999999999999998877766665554 


Q ss_pred             hhcccccc
Q 008185          295 FSAREESL  302 (574)
Q Consensus       295 ~~lpEt~~  302 (574)
                      +.+||++.
T Consensus       397 ~~~~~~~~  404 (417)
T PRK10489        397 LVLGELRR  404 (417)
T ss_pred             Hhcccccc
Confidence            56677653

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.99  E-value=3.2e-07  Score=97.53  Aligned_cols=235  Identities=16%  Similarity=0.102  Sum_probs=132.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH-hhhcccccccc--c--ccchhcc--h-----
Q 008185          246 VGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI-SFSAREESLGL--A--QVSYQNV--A-----  313 (574)
Q Consensus       246 g~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~-~~~lpEt~~~~--~--~~~~~~~--~-----  313 (574)
                      .++.+...-.-.+.-++||++.|.+....+.+...++.++..++...+ .+++...+...  .  ++++++.  .     
T Consensus       148 a~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~  227 (432)
T PF06963_consen  148 ARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEES  227 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccc
Confidence            334444444456788999999999998889999988888888877766 33332211110  0  0000000  0     


Q ss_pred             ------hhhhhhhHHH----HHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHH
Q 008185          314 ------SKSIAQSIKK----QFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSM  383 (574)
Q Consensus       314 ------~~~~~~~~~~----~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig  383 (574)
                            .....+..++    ..+.++..+++|. +.+.+-+.+.|.....+...+.-|... .|+++..+|.+...+++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~v-flas~alalLY~TVLsf~~lmt~yl~~-~G~s~~~igi~R~~gav~  305 (432)
T PF06963_consen  228 SSESSSDPSILKRLWNPLRTIIRGWRTYFRQPV-FLASFALALLYFTVLSFGGLMTAYLKS-QGYSPSVIGIFRGLGAVF  305 (432)
T ss_pred             cccccchhhHHHHHHHHHHHHhccHHHHHhCHH-HHHHHHHHHHHHHHhcCcHHHHHHHHH-CCCCHHHHHHHHHHHHHH
Confidence                  0001111111    2222333455554 444443333366555555444445544 499999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhH----HHHHHHH
Q 008185          384 LLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKL----LPFSMLL  459 (574)
Q Consensus       384 ~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~p~~~l~  459 (574)
                      .+.|++++.++.+|+|..+.-.++......+..+.....  +.  .+.+..............+.-+.+    +...-++
T Consensus       306 Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~--~~--~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~  381 (432)
T PF06963_consen  306 GLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSF--WA--PGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIM  381 (432)
T ss_pred             HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH--hc--CCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence            999999999999999988877766655544433322111  11  011101100000000111111111    2223457


Q ss_pred             HhhcCCChhHHHHHHHHHHHHhHHHHH
Q 008185          460 ARLCPQGCEGSLTSFSASALCLSSIAS  486 (574)
Q Consensus       460 ~~~~p~~~~gt~~gl~~~~~~lg~~lg  486 (574)
                      +|..|+++||+..|.-++.+++.-.+.
T Consensus       382 Qe~V~~~~Rg~v~gvq~sl~~lf~ll~  408 (432)
T PF06963_consen  382 QENVPESERGAVSGVQNSLQSLFELLS  408 (432)
T ss_pred             cccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence            888999999999999999998776544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.98  E-value=4.1e-09  Score=108.59  Aligned_cols=175  Identities=18%  Similarity=0.079  Sum_probs=127.2

Q ss_pred             chhHHHHHHHHHHHhhh-cc--chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhh-hheeeccccccCCCccchhHh
Q 008185          113 NKQMLVLCGLGYWVQGF-RC--FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKP-LYGILSDALYIGGAHRIPYIC  188 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~-~~--~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~p-l~G~lsD~~~~~G~rRk~~l~  188 (574)
                      ++.+|. +++.++...+ .+  ..|.++  |+.|.-|.|...+.+..+++=++...++ ++|++||++  ++.||.|.-+
T Consensus       251 Nk~iW~-la~a~vfvYivR~gi~dW~p~--YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDkl--fkgrR~p~~~  325 (448)
T COG2271         251 NKLIWL-LALANVFVYVVRYGINDWGPL--YLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL--FKGRRGPMAL  325 (448)
T ss_pred             ChHHHH-HHHHHHHHHHHHHHHhhhHHH--HHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cccccchHHH
Confidence            444555 6666654444 44  566665  7888899999999999999988777766 689999986  4458888877


Q ss_pred             HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHH-HHHHHHHHH
Q 008185          189 IGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAAS-GGILGNLFG  267 (574)
Q Consensus       189 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~-G~~igp~ig  267 (574)
                      +..+...++.......++.  +.....++.++.++-.-......+....|..|++-.|.+.|+......+ |.+++...-
T Consensus       326 i~~~~i~~~~~~~w~~~~~--~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~  403 (448)
T COG2271         326 IFMLLITASLVLYWLAPNG--SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPL  403 (448)
T ss_pred             HHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcc
Confidence            7777777777767666643  2333344444444333333344556678999999999999988888887 888888888


Q ss_pred             HHhhccCChhHHHHHHHHHHHHHHHHh
Q 008185          268 GYFLLKTPPTTMFLVFAVLLSLQLAIS  294 (574)
Q Consensus       268 g~l~~~~gwr~~f~i~ai~~~~~~~~~  294 (574)
                      |++.+.+||...|.+..+.+++..++.
T Consensus       404 g~i~d~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         404 GYIADTWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             eeeEecCCCcchHHHHHHHHHHHHHHH
Confidence            888888999999999877776665553

>PRK09952 shikimate transporter; Provisional

Probab=98.98  E-value=1.3e-08  Score=109.73  Aligned_cols=160  Identities=11%  Similarity=0.072  Sum_probs=99.3

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhh-hhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLP-MVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~-~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      .+.++++++|.+......+..+..+. ....|++|+++||+     +||+.+..+.++..++...+............++
T Consensus       273 ~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T PRK09952        273 ALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-----GRRRVYITGALIGTLSAFPFFMALEAQSIFWIVF  347 (438)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            34477777898887554433333332 23477899999985     4555555554443333322211110111122223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHH-HHHHHHHHHHHHHHHhhccC--ChhHHHHHHHHHHHHHHH
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFM-AAASGGILGNLFGGYFLLKT--PPTTMFLVFAVLLSLQLA  292 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~-~~~~G~~igp~igg~l~~~~--gwr~~f~i~ai~~~~~~~  292 (574)
                      +..++.+++.+.......++++|..|.+.|+...++.+. +..+|+.++|.+.|++.+..  +|+..+...++..++..+
T Consensus       348 ~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v  427 (438)
T PRK09952        348 FSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAM  427 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            334444555555555567889999999999888887544 44589999999999998743  488888888777766666


Q ss_pred             Hhhhccccc
Q 008185          293 ISFSAREES  301 (574)
Q Consensus       293 ~~~~lpEt~  301 (574)
                      ..+.+||+.
T Consensus       428 ~~~~~~~~~  436 (438)
T PRK09952        428 TALLMKDNQ  436 (438)
T ss_pred             HHHHccccc
Confidence            666677753

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.97  E-value=1e-08  Score=105.58  Aligned_cols=154  Identities=26%  Similarity=0.262  Sum_probs=122.0

Q ss_pred             hhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccch-hHhHHHHHHHHHHHHhhcccCccchH
Q 008185          134 WLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIP-YICIGVFLQILSWGPLALFPVAAKAL  211 (574)
Q Consensus       134 ~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~-~l~i~~~~~~~~~~~~~~~~~~~~~~  211 (574)
                      ....+.+.++.+|.+..+.++..+...++..+ .+++|+++||+     +||+ .+.++..+..++........+    .
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~----~  265 (352)
T cd06174         195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-----GRRRLLLLIGLLLAALGLLLLALAPS----L  265 (352)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHhcc----H
Confidence            33445566776799999999998888877655 77899999985     4555 666677776777666655532    3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 008185          212 PNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQL  291 (574)
Q Consensus       212 ~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~  291 (574)
                      ..+.+..++.+++.+...+....++.|..|+++|++.+++.+....+|..++|.++|.+.+..+|++.|++.+++.++..
T Consensus       266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~  345 (352)
T cd06174         266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA  345 (352)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence            44566677777887777777888999999999999999999999999999999999999998999999999988887776


Q ss_pred             HHhhh
Q 008185          292 AISFS  296 (574)
Q Consensus       292 ~~~~~  296 (574)
                      +..++
T Consensus       346 i~~~~  350 (352)
T cd06174         346 LLLLL  350 (352)
T ss_pred             HHhee
Confidence            65543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.96  E-value=1.8e-08  Score=111.30  Aligned_cols=278  Identities=17%  Similarity=0.135  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHH
Q 008185          116 MLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFL  193 (574)
Q Consensus       116 ~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~  193 (574)
                      +++++++.++.+++.. .....+. .+.+.|+++..+.|++.+.+-++-.+ .-+.++..-|     ++|..++-+|.++
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~It-tiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-----~HrPr~Ig~G~~~  171 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVIT-TIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-----GHRPRWIGIGLVL  171 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhh-hhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-----cCccceeeechhH
Confidence            4444777778888876 3333333 56777999999999988888776544 3334455444     3677788778887


Q ss_pred             HHHHHHHhhcccC-----------------cc-----------------------------ch-HH-HHHHHHHHHHHHH
Q 008185          194 QILSWGPLALFPV-----------------AA-----------------------------KA-LP-NLMACVLLSNLGA  225 (574)
Q Consensus       194 ~~~~~~~~~~~~~-----------------~~-----------------------------~~-~~-~l~~~~~l~~~g~  225 (574)
                      +++..++.++..-                 +.                             .+ .+ .+++.-++.|+|.
T Consensus       172 m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~  251 (735)
T KOG3626|consen  172 MGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGA  251 (735)
T ss_pred             HHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCC
Confidence            7777666655300                 00                             00 11 1233355668888


Q ss_pred             HHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc-------------CChhH------HHHHHHHH
Q 008185          226 SITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK-------------TPPTT------MFLVFAVL  286 (574)
Q Consensus       226 ~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~-------------~gwr~------~f~i~ai~  286 (574)
                      +......-.++-|..++++-....|+.+....+||++|-++|+++...             .+.||      =|.+.+++
T Consensus       252 Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~  331 (735)
T KOG3626|consen  252 TPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGAL  331 (735)
T ss_pred             CCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHH
Confidence            887777778888998888888888999999999999999999988642             12343      35555555


Q ss_pred             HHHHHHHhhhcccccccccc-cchhc------c-----hhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccc
Q 008185          287 LSLQLAISFSAREESLGLAQ-VSYQN------V-----ASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVL  354 (574)
Q Consensus       287 ~~~~~~~~~~lpEt~~~~~~-~~~~~------~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~  354 (574)
                      .++..+..|+.|.+.....+ .++++      .     .+.+....+++..+.++++++||.+...++...+-......+
T Consensus       332 ~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~  411 (735)
T KOG3626|consen  332 LLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGY  411 (735)
T ss_pred             HHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhH
Confidence            55555555666655433211 00000      0     011223345667778888999998776655444322223334


Q ss_pred             cccceeehccccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Q 008185          355 SGSMFCYQTQCLNINPSVIGMSR-VIGQSMLLSLTVFYDRYWKKVP  399 (574)
Q Consensus       355 ~~~~~~~~~~~~g~s~~~~gl~~-i~~~ig~lig~~l~~~l~~r~~  399 (574)
                      .+.+|=|....+|.++..+.++. .....+..+|.++.+++.||+.
T Consensus       412 ~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk  457 (735)
T KOG3626|consen  412 ITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK  457 (735)
T ss_pred             HHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence            44456677788999988777653 3344445556666677777754

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.95  E-value=1.6e-08  Score=108.83  Aligned_cols=159  Identities=19%  Similarity=0.106  Sum_probs=99.7

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      .+.++++++|.+..+.++..+++.++..+ .++.|+++||+.  +.+|++......+...++...+...+...  ...+.
T Consensus       266 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  341 (434)
T PRK11663        266 GNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLF--NGNRGPMNLIFAAGILLSVGSLWLMPFAS--YVMQA  341 (434)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--cCCccHHHHHHHHHHHHHHHHHHHccccc--HHHHH
Confidence            34577777899999999988888777665 667899999852  11233322221111111111111112111  12222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISF  295 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~  295 (574)
                      +..+..+++...........+.|..++++|+..+++.+....+|.++||.+.|++.+..||+..|++.+++.++..+..+
T Consensus       342 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        342 ACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            22222222211111122344678888889999999999999999999999999999999999999999888777665543


Q ss_pred             -hccc
Q 008185          296 -SARE  299 (574)
Q Consensus       296 -~lpE  299 (574)
                       +.++
T Consensus       422 ~~~~~  426 (434)
T PRK11663        422 PFLNA  426 (434)
T ss_pred             HHHhh
Confidence             3444

>PRK03545 putative arabinose transporter; Provisional

Probab=98.94  E-value=2.4e-08  Score=105.75  Aligned_cols=148  Identities=14%  Similarity=-0.018  Sum_probs=101.7

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      .++++++++|.+..+.+++.++..++..+ .++.|+++||+     +||..+ .+..+..++...+....++   ...++
T Consensus       228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----~~~~~~-~~~~~~~~~~~~l~~~~~~---~~~~~  298 (390)
T PRK03545        228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-----PSGFLL-IAIALLLVCLLLLLPAANS---EWHLS  298 (390)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-----chhHHH-HHHHHHHHHHHHHHHHhch---HHHHH
Confidence            34466777899999999888877766555 67789999984     344443 3333333333322222222   33344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS  294 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~  294 (574)
                      ++.++.+++.........+.+.|..+ ++|++++++++....+|..+||+++|.+.+..|++.+|++.+++.++..+..
T Consensus       299 ~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        299 VLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence            55555555554444444555666655 6789999998888899999999999999999999999999988887766654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.91  E-value=2.3e-08  Score=106.20  Aligned_cols=134  Identities=16%  Similarity=0.167  Sum_probs=96.4

Q ss_pred             HHHHHHhhhhh-hhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHH
Q 008185          153 QLVQNSGNLPM-VAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVA  231 (574)
Q Consensus       153 ~l~~s~~~l~~-~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~  231 (574)
                      +++.++..++. ...|++|+++||+     +||+.+..+.....+.........+    .+.+++.+++.+++.+...+.
T Consensus       261 g~~~~~~~l~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~  331 (408)
T PRK09874        261 GMIASVPGVAALLSAPRLGKLGDRI-----GPEKILITALIFSVLLLIPMSFVQT----PLQLGILRFLLGAADGALLPA  331 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHhhhHhhHHH
Confidence            44444444444 3477899999985     4555555565555555544443322    334455666667776666666


Q ss_pred             HHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 008185          232 KDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISF  295 (574)
Q Consensus       232 ~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~  295 (574)
                      ....+.+..+++++|+.+++.+....+|..+||.++|.+.+..||++.|++.+++.++..+..+
T Consensus       332 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        332 VQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            6677778888889999999999999999999999999999999999999999888777666554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.90  E-value=1.7e-08  Score=108.85  Aligned_cols=160  Identities=11%  Similarity=-0.042  Sum_probs=97.9

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHH-HHHHHHHHhhcccCccchHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVF-LQILSWGPLALFPVAAKALPNL  214 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~-~~~~~~~~~~~~~~~~~~~~~l  214 (574)
                      .+.+++++.|.++.+.++...++.+...+ .++.|+++||+   +.+|+........ ...++.......+..  .....
T Consensus       274 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  348 (438)
T TIGR00712       274 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV---FKGNRGATGVFFMTLVTIAVIVYWMNPAG--NPLVD  348 (438)
T ss_pred             HHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcccHHHHHHHHHHHHHHHHHHhcCCC--chHHH
Confidence            45577877899999999888877766554 77899999985   2233333211111 111111111111111  11112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHH-HHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASG-GILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI  293 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G-~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~  293 (574)
                      .+..++.+++.............|..++++||.++++.+....+| .++||.++|.+.+..||.+.|++.++..++..+.
T Consensus       349 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  428 (438)
T TIGR00712       349 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  428 (438)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            222222222211111111234678888899999999988777766 5789999999999999999999988777666665


Q ss_pred             h-hhccccc
Q 008185          294 S-FSAREES  301 (574)
Q Consensus       294 ~-~~lpEt~  301 (574)
                      . +++||++
T Consensus       429 ~~~~~~~~~  437 (438)
T TIGR00712       429 LIVVMIGEK  437 (438)
T ss_pred             HHHHHhhcc
Confidence            4 5678764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10054 putative transporter; Provisional

Probab=98.90  E-value=1.9e-08  Score=107.06  Aligned_cols=130  Identities=17%  Similarity=0.185  Sum_probs=90.2

Q ss_pred             ceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEE
Q 008185          358 MFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFV  437 (574)
Q Consensus       358 ~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~  437 (574)
                      ++.|.++.+|+++.+.|+......++.+++....+++.||+++|+++..+.++..+..+. +.+..         +.+..
T Consensus        30 l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~-~~~~~---------~~~~~   99 (395)
T PRK10054         30 MTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA-IPLVN---------NVTLV   99 (395)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH-HHHHh---------HHHHH
Confidence            344667789999999999988888888888899999999999999887776655444332 11211         11111


Q ss_pred             eehhHHHHHHHHhhHHH-HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          438 LCFAGLAETLAQFKLLP-FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       438 l~~~~l~~~~~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      +....+.. .+.....| ...+..|..|++.|++++|+.+...++|.+++|.+++.+.+ .|+
T Consensus       100 ~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~  160 (395)
T PRK10054        100 VLFFALIN-CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSI  160 (395)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence            11111111 11111222 34667889999999999999999999999999999998875 443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.90  E-value=3.3e-08  Score=104.89  Aligned_cols=150  Identities=15%  Similarity=0.062  Sum_probs=104.7

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACV  218 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (574)
                      ++.+ .|.+  ..++..+.+.++..+ .++.|+++||+     +||+.+..+..+..+++.++...+ +   ...+++..
T Consensus       242 ~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~  309 (399)
T PRK05122        242 YYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-----GGLRVAIVSLLVEILGLLLLWLAP-S---PWMALIGA  309 (399)
T ss_pred             HHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhc-c---HHHHHHHH
Confidence            4444 4553  345555556565555 67889999985     345555556555566655555443 2   23345556


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhcc
Q 008185          219 LLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAR  298 (574)
Q Consensus       219 ~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~~lp  298 (574)
                      ++.+++.+...+.....+.|..++++||+++++++....+|..++|.+.|++.+..||++.|++.+++.++..+..++++
T Consensus       310 ~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        310 ALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66677766655555566778888899999999999999999999999999999989999999998887777666655555


Q ss_pred             ccc
Q 008185          299 EES  301 (574)
Q Consensus       299 Et~  301 (574)
                      +++
T Consensus       390 ~~~  392 (399)
T PRK05122        390 RRA  392 (399)
T ss_pred             ccc
Confidence            443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.90  E-value=1.6e-08  Score=105.49  Aligned_cols=140  Identities=19%  Similarity=0.081  Sum_probs=89.5

Q ss_pred             hhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHH-HHHHHHHHHhhcccCccchHHH
Q 008185          136 ALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGV-FLQILSWGPLALFPVAAKALPN  213 (574)
Q Consensus       136 ~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~-~~~~~~~~~~~~~~~~~~~~~~  213 (574)
                      ..+.++++++|.++.+.++..+...++..+ .++.|+++||.   +.+|+..+.... ....++..........  ....
T Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  312 (379)
T TIGR00881       238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKL---FNGRRGPLAVFFMALIIVSLLVYWLNPAA--NPLM  312 (379)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHH---cCCcchHHHHHHHHHHHHHHHHHhcCcch--hHHH
Confidence            345577788899999999988888776655 67889999974   123332222111 1222222222221111  1222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 008185          214 LMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMF  280 (574)
Q Consensus       214 l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f  280 (574)
                      .+++.++.++...........++.|..|+++|+.++++.+....+|..+||.+.|++.+..||++.|
T Consensus       313 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       313 DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            2333333333222223333566789999999999999999999999999999999999999999865

>PRK03699 putative transporter; Provisional

Probab=98.89  E-value=4.2e-08  Score=104.20  Aligned_cols=154  Identities=6%  Similarity=-0.030  Sum_probs=102.4

Q ss_pred             hhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHH
Q 008185          135 LALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPN  213 (574)
Q Consensus       135 ~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~  213 (574)
                      .-.+.++++++|.++.+.++..+.+.++..+ .++.|.++||+     +||..+.....+.++...++...+ +   ...
T Consensus       226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----~~~~~l~~~~~~~~~~~~~~~~~~-~---~~~  296 (394)
T PRK03699        226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-----DLQRILTVLAGLALVLMYLFVNTD-D---PSH  296 (394)
T ss_pred             HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-----chhhHHHHHHHHHHHHHHHHHHcC-C---chH
Confidence            3345578888999999999998888777665 66789999985     344444444444444444333332 2   222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 008185          214 LMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI  293 (574)
Q Consensus       214 l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~  293 (574)
                      +.+..++.+++.+.......+...|..+ ++++...+.......+|..+||.++|++.+..||+..|++.+++.++..+.
T Consensus       297 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        297 LLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            3334444444444333333445556554 445667777777788999999999999999999999999998887777665


Q ss_pred             hhhcc
Q 008185          294 SFSAR  298 (574)
Q Consensus       294 ~~~lp  298 (574)
                      .+..+
T Consensus       376 ~~~~~  380 (394)
T PRK03699        376 CILLG  380 (394)
T ss_pred             HHHHH
Confidence            44433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.89  E-value=5e-08  Score=103.18  Aligned_cols=151  Identities=13%  Similarity=0.103  Sum_probs=112.9

Q ss_pred             hhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHH
Q 008185          135 LALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPN  213 (574)
Q Consensus       135 ~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~  213 (574)
                      ...+.++++ +|.++.++|++.++..+...+ .++.|.+.||+     +.|..+.++.+...+.+.+.+..++    .+.
T Consensus       226 ~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-----g~~~~l~~~~~~~~~~~~~~~~~~~----~~~  295 (382)
T TIGR00902       226 GFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-----SARDLLLISAIACVGRWAIIGAIEA----FPL  295 (382)
T ss_pred             HHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-----CHHHHHHHHHHHHHHHHHHHHhHhh----HHH
Confidence            344557765 899999999988876666554 66788899984     4566677788888888877765532    455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHH-HHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 008185          214 LMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAF-MAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLA  292 (574)
Q Consensus       214 l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~-~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~  292 (574)
                      +++..++.++..+...+....++.+. |+++++..+++++ ....+|.++||.++|++.+..|+ ..|++.+++.++..+
T Consensus       296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            66678888887777777777778877 7788899999876 45679999999999999999986 778887777765544


Q ss_pred             Hhhhc
Q 008185          293 ISFSA  297 (574)
Q Consensus       293 ~~~~l  297 (574)
                      +.+..
T Consensus       374 ~~~~~  378 (382)
T TIGR00902       374 LIPKK  378 (382)
T ss_pred             HHHhc
Confidence            43333

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.86  E-value=5.8e-08  Score=102.57  Aligned_cols=147  Identities=13%  Similarity=0.184  Sum_probs=99.0

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      ++.++++ .|.++.+.++..++..+..++ +.+.|+++||+     +||+.+..+..+..++.....  ..     ....
T Consensus       223 lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~~l~~~~~~~~~~~~~~~--~~-----~~~~  289 (381)
T PRK03633        223 MPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-----GRLLVLRVQVFVVILGSIAML--SQ-----AAMA  289 (381)
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-----CcHHHHHHHHHHHHHHHHHHh--hh-----HHHH
Confidence            4446655 699999999888877766555 66789999985     556666555555444443322  11     1122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISF  295 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~  295 (574)
                      ..+++.+++.....+...+.+.|..++++++...+..+....+|..+||.++|++.++.||++.|.+.+.+.++..+..+
T Consensus       290 ~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        290 PALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            33344344333334455666778887777776777777788899999999999999999999999998777765544333


Q ss_pred             h
Q 008185          296 S  296 (574)
Q Consensus       296 ~  296 (574)
                      .
T Consensus       370 ~  370 (381)
T PRK03633        370 R  370 (381)
T ss_pred             h
Confidence            3

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.86  E-value=2.3e-08  Score=108.45  Aligned_cols=151  Identities=9%  Similarity=0.053  Sum_probs=105.6

Q ss_pred             hhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHH
Q 008185          136 ALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNL  214 (574)
Q Consensus       136 ~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l  214 (574)
                      .++.+.++ +|.+..+.++..++..++..+ +|+.|.++||... +.+|+..+..+.++..++.+++.... +   .+.+
T Consensus       263 ~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~-~---~~~~  336 (455)
T TIGR00892       263 FLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWI-RPHVQYLFSFALLFNGLTHLLCALAG-D---YTGL  336 (455)
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CHHHHHHHHHHHHHHHHHHHHHHHhc-h---HHHH
Confidence            34445554 799999999998888776544 8899999997311 11222222223333333333333332 2   3445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHH
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKT-PPTTMFLVFAVLLSLQLA  292 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~-gwr~~f~i~ai~~~~~~~  292 (574)
                      ++.+++.+++.+.......+++.|..++++++..+++++....+|.++||.++|++.+.. +|++.|++.+++.++..+
T Consensus       337 ~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       337 VIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            566777677776666666788899999899999999999999999999999999998877 599999998877655443

>TIGR00897 2A0118 polyol permease family

Probab=98.84  E-value=7.9e-08  Score=102.39  Aligned_cols=155  Identities=14%  Similarity=0.071  Sum_probs=100.2

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccC-ccchHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPV-AAKALPNL  214 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~-~~~~~~~l  214 (574)
                      .|.++++ +|.+..+.++..+...++..+ .++.|+++||+   + ||++....+.+...++...+...+. ...+...+
T Consensus       245 ~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~---~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  319 (402)
T TIGR00897       245 LPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL---G-WMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA  319 (402)
T ss_pred             HHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh---c-chhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence            4456654 899999988888877776555 77899999985   2 4444432222222222222221110 00112333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS  294 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~  294 (574)
                      +++.++.+++.+... .....+.|. ++++||.++++.+....+|..+||.++|.+.+..||+.+|++.++..++..++.
T Consensus       320 ~~~~~~~G~~~~~~~-~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       320 LIIAIALGIFLAGYV-PLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            344444444444332 233455565 456899999999999999999999999999999999999999998877766665


Q ss_pred             hhcc
Q 008185          295 FSAR  298 (574)
Q Consensus       295 ~~lp  298 (574)
                      .|++
T Consensus       398 ~~~~  401 (402)
T TIGR00897       398 AFIR  401 (402)
T ss_pred             HHhc
Confidence            5543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.83  E-value=8.8e-08  Score=101.75  Aligned_cols=156  Identities=13%  Similarity=0.026  Sum_probs=104.1

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      .+.++++ +|.+..+.+...+++.++..+ .++.|+++||+     +||+.+.++..+..++..++...+.+.   ..+.
T Consensus       228 lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~  298 (393)
T PRK09705        228 LPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-----DRRKLLMLALVLQLVGFCGFIWLPLQL---PVLW  298 (393)
T ss_pred             HHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHccchH---HHHH
Confidence            3446665 799999999999988887666 67889999985     455555555555555544443333221   1111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc-ccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHH
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQ-KNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP-PTTMFLVFAVLLSLQLAI  293 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~-~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g-wr~~f~i~ai~~~~~~~~  293 (574)
                        .++.+++.+...+.......|..+ ++++++.+++.+....++..+||.+.|++.+..| |+..|++.++..++..+.
T Consensus       299 --~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (393)
T PRK09705        299 --AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMII  376 (393)
T ss_pred             --HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence              223344433333333445566664 4678999999889889999999999999999876 778888877766666555


Q ss_pred             h-hhccccccc
Q 008185          294 S-FSAREESLG  303 (574)
Q Consensus       294 ~-~~lpEt~~~  303 (574)
                      . ++.||++..
T Consensus       377 ~~~~~~~~~~~  387 (393)
T PRK09705        377 TLRFAPARFPQ  387 (393)
T ss_pred             HHHhccccccc
Confidence            4 567887643

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.82  E-value=5.2e-08  Score=106.57  Aligned_cols=147  Identities=17%  Similarity=0.150  Sum_probs=100.0

Q ss_pred             hhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHH
Q 008185          136 ALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNL  214 (574)
Q Consensus       136 ~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l  214 (574)
                      .++.++++++|.+..+.+++.+...++..+ .++.|+++||+     +||+.++++.++..+...........  ....+
T Consensus       297 ~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  369 (496)
T PRK03893        297 LLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-----GTRKAYVCSLLISQLLIIPVFAIGGA--NVWVL  369 (496)
T ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHhhcccc--HHHHH
Confidence            355677778999999999999888877665 66789999985     34444444544444443333222221  12222


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 008185          215 MACVLLS-NLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQ  290 (574)
Q Consensus       215 ~~~~~l~-~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~  290 (574)
                      .+..++. ..+.+. .....+++.|..++++|+..+++.+....+|..+||+++|++.+..||++.+++.++...+.
T Consensus       370 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~  445 (496)
T PRK03893        370 GLLLFFQQMLGQGI-SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFV  445 (496)
T ss_pred             HHHHHHHHHHhccc-chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            2333332 223222 23445678899998999999999988889999999999999999999999887766544443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.82  E-value=4.2e-06  Score=85.53  Aligned_cols=233  Identities=13%  Similarity=0.063  Sum_probs=129.8

Q ss_pred             HhcCCChhHHHHHHHHhhhh-hhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH
Q 008185          143 HNLSLHPSTLQLVQNSGNLP-MVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLS  221 (574)
Q Consensus       143 ~~~~~s~~~~~l~~s~~~l~-~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  221 (574)
                      ++.|.+..+++.+....... .+++|+.|.++||+   | |||-.+ +.+++..++.+.- ..    ..+..+++.|+++
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~---G-rk~~cl-~~cily~~scl~k-~~----~~~~~L~~GRvlg  131 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY---G-RKKACL-LFCILYSLSCLTK-HS----SNYPVLLLGRVLG  131 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C-chHHHH-HHHHHHHHHHHHH-hc----cccHHHHHHHHHH
Confidence            35899999999887777664 45699999999985   3 555444 3444444444422 11    1267789999999


Q ss_pred             HHHHHHHHHHHHHHH-HhhhcccCccchHH-HHHHH----HHHHHHHHHHHHHHhhccC--ChhHHHHHHHHHHHHHHHH
Q 008185          222 NLGASITEVAKDALV-AEYGQKNGIVGLQS-YAFMA----AASGGILGNLFGGYFLLKT--PPTTMFLVFAVLLSLQLAI  293 (574)
Q Consensus       222 ~~g~~~~~~~~~a~i-~d~~~~~~rg~~~s-~~~~~----~~~G~~igp~igg~l~~~~--gwr~~f~i~ai~~~~~~~~  293 (574)
                      +++.+.-...-.+.+ .|.-++.......+ .++.+    ..+-.+++.+++.++.+..  |...+|.....+.++..++
T Consensus       132 GiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~  211 (354)
T PF05631_consen  132 GIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL  211 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            999888766555554 33322211111121 22212    2233444445555555544  4588888877666666665


Q ss_pred             hh-hcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccc-eeehccccCCCch
Q 008185          294 SF-SAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSM-FCYQTQCLNINPS  371 (574)
Q Consensus       294 ~~-~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~g~s~~  371 (574)
                      .. ..+|.+....+.       .+..+..++..   ..+.+||+++...+...+-=..++.+.-.. |-...+.   ...
T Consensus       212 I~~~W~ENyg~~~~~-------~~~~~~~~~a~---~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~---~~~  278 (354)
T PF05631_consen  212 ILKTWPENYGDTSSS-------SSLSGSFREAW---RAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDD---EEL  278 (354)
T ss_pred             HHhcccccCCCcccc-------cchHHHHHHHH---HHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCC---CCC
Confidence            54 467766432211       11112222222   234568888776655444112222111000 1011111   123


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008185          372 VIGMSRVIGQSMLLSLTVFYDRYWKKV  398 (574)
Q Consensus       372 ~~gl~~i~~~ig~lig~~l~~~l~~r~  398 (574)
                      -.|+++...++.+++|..++.++..+.
T Consensus       279 P~GlIFssFM~a~MlGS~lf~~l~s~~  305 (354)
T PF05631_consen  279 PLGLIFSSFMVAMMLGSSLFSRLLSKS  305 (354)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            478999999999999999997766543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.82  E-value=3.3e-08  Score=106.48  Aligned_cols=156  Identities=17%  Similarity=0.030  Sum_probs=103.3

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhh---cccCcc----chH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLA---LFPVAA----KAL  211 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~---~~~~~~----~~~  211 (574)
                      ++.+++|.+..+.++......+...+ .++.|+++||+     +||+.+.++..+..++..++.   ......    ...
T Consensus       309 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (481)
T TIGR00879       309 TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-----GRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGN  383 (481)
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhH
Confidence            34455899888888777776665444 77889999985     345555555555555554444   111110    011


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 008185          212 PNLMACVL-LSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQ  290 (574)
Q Consensus       212 ~~l~~~~~-l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~  290 (574)
                      ..+....+ ....+.+. ......++.|..|+++|+.++++.+....+|.+++|.+.+.+.+..+|++.|++.+++.++.
T Consensus       384 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~  462 (481)
T TIGR00879       384 VAIVFILLFIAFFAMGW-GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLG  462 (481)
T ss_pred             HHHHHHHHHHHHHHccc-cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHH
Confidence            11122222 22222222 12334566899998999999999999999999999999999998899999999998888777


Q ss_pred             HHHh-hhccccc
Q 008185          291 LAIS-FSAREES  301 (574)
Q Consensus       291 ~~~~-~~lpEt~  301 (574)
                      .++. ++.||++
T Consensus       463 ~i~~~~~~~~~~  474 (481)
T TIGR00879       463 LIFVYFFLPETK  474 (481)
T ss_pred             HHHHheecccCC
Confidence            7665 4677765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.82  E-value=7.5e-08  Score=102.39  Aligned_cols=151  Identities=17%  Similarity=0.060  Sum_probs=101.6

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      .+.++++ .|.++.+.++..+...++..+ .++.|+++||+     +||+.+.++.....++..++...+ +   ...+.
T Consensus       243 ~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~  312 (406)
T PRK11551        243 LPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-----RPRRVVLLIYAGILASLAALAAAP-S---FAGML  312 (406)
T ss_pred             HHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHhcC-c---HHHHH
Confidence            3445555 799999999988888776655 67899999985     455555444444444444343332 2   22333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHh
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKT-PPTTMFLVFAVLLSLQLAIS  294 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~-gwr~~f~i~ai~~~~~~~~~  294 (574)
                      +..++.+++.+.......+++.|..|+++|++.+++.+....+|..+||.++|++.+.. +|...+++.+...++..+..
T Consensus       313 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK11551        313 LAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA  392 (406)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence            44444444444444555678899999999999999999999999999999999998764 46666766655554444444


Q ss_pred             hhc
Q 008185          295 FSA  297 (574)
Q Consensus       295 ~~l  297 (574)
                      +++
T Consensus       393 ~~~  395 (406)
T PRK11551        393 LLL  395 (406)
T ss_pred             HHH
Confidence            443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.82  E-value=4.3e-08  Score=103.02  Aligned_cols=127  Identities=13%  Similarity=0.054  Sum_probs=92.8

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      ..+.+|.++.+.|+......++..++.++.+++.||+++|+.+..+.++..+..+... ..         ++.+. +...
T Consensus        31 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~---------~~~~~-~~~~   99 (385)
T TIGR00710        31 IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA-LS---------NNIET-LLVL   99 (385)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH-HH---------ccHHH-HHHH
Confidence            3567999999999999999999999999999999999999998887766655443221 11         11111 1111


Q ss_pred             HHHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          442 GLAETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       442 ~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      .+..+++ .....+...++.|.+|+++|++++|+.+....+|..+++.+++.+.+..++
T Consensus       100 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  158 (385)
T TIGR00710       100 RFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSW  158 (385)
T ss_pred             HHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            1222222 233344467788999999999999999999999999999999998887664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK12382 putative transporter; Provisional

Probab=98.81  E-value=9.9e-08  Score=101.07  Aligned_cols=145  Identities=13%  Similarity=0.045  Sum_probs=102.4

Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHH
Q 008185          139 FHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMAC  217 (574)
Q Consensus       139 ~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  217 (574)
                      .++++ .+.+.  .++..+.+.++..+ .++.|+++||+     +||+.+..+..+..+++.+....+ +   ...++++
T Consensus       241 ~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~  308 (392)
T PRK12382        241 LYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-----GGVKVAIVSLLVETVGLLLLWLAP-T---AWVALAG  308 (392)
T ss_pred             HHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCeehHHHHHHHHHHHHHHHHcc-c---HHHHHHH
Confidence            35544 45543  44445555555444 67899999985     344455556666566665554443 2   3334556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhh
Q 008185          218 VLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISF  295 (574)
Q Consensus       218 ~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~  295 (574)
                      .++.+++.+...+...+.+.|..++++||.++++.+....+|..+||.++|++.+..||++.|++.+++.++..++.+
T Consensus       309 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        309 AALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            666667766665556677788888899999999999999999999999999999999999999999877766655543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.78  E-value=4e-08  Score=101.59  Aligned_cols=128  Identities=22%  Similarity=0.174  Sum_probs=96.0

Q ss_pred             ehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeeh
Q 008185          361 YQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCF  440 (574)
Q Consensus       361 ~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~  440 (574)
                      +..+.+|.++.+.|+......++..++.++.+++.||+++|+++..+.++.++..++.. +.         ++.+ .+..
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~---------~~~~-~~~~   90 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-FA---------SNFW-LLLI   90 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-HH---------CCHH-HHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-hh---------hhHH-HHhh
Confidence            45678999999999999999999999999999999999999988888777766633222 11         1222 2222


Q ss_pred             hHHHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          441 AGLAETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       441 ~~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      ..+..+++ +........++.|..|+++|++++|+.+...++|..+++.+++.+.+..++
T Consensus        91 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~  150 (352)
T PF07690_consen   91 ARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW  150 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred             hccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence            22333333 333444467889999999999999999999999999999999998876664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.78  E-value=1.3e-07  Score=99.84  Aligned_cols=155  Identities=10%  Similarity=0.063  Sum_probs=105.8

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      ..+.+|+++.+.|+......++..++.++.+.+.||+++|+.+..+.++.++..+... +.         ++.+ .+...
T Consensus        38 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~~---------~~~~-~l~~~  106 (405)
T TIGR00891        38 VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG-FA---------PGYI-TMFIA  106 (405)
T ss_pred             HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-Hh---------ccHH-HHHHH
Confidence            4567999999999999999999999999999999999999998887766655443221 11         1111 11111


Q ss_pred             HHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHH
Q 008185          442 GLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALL  520 (574)
Q Consensus       442 ~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll  520 (574)
                      .+..+++. ........++.|.+|+++|+.++|+.+....+|..+++.+++.+.+..+.      .....+.+.++..++
T Consensus       107 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~------~w~~~f~~~~~~~~~  180 (405)
T TIGR00891       107 RLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD------GWRALFFISILPIIF  180 (405)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------cHHHHHHHHHHHHHH
Confidence            22222332 22333456788999999999999999999999999999999988876541      112233344444444


Q ss_pred             HHHHHHhcCCCHH
Q 008185          521 PLIWIHNVPMSET  533 (574)
Q Consensus       521 ~l~~~~~vp~~~~  533 (574)
                      .++....+||+++
T Consensus       181 ~~~~~~~~~~~~~  193 (405)
T TIGR00891       181 ALWLRKNIPEAED  193 (405)
T ss_pred             HHHHHHhCCCChh
Confidence            5555567788754

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.76  E-value=1.5e-07  Score=103.06  Aligned_cols=155  Identities=19%  Similarity=0.150  Sum_probs=103.2

Q ss_pred             HHHHHHhcCCChhHHHHHHH-Hhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHH---HHhhcccCccchHH
Q 008185          138 NFHMAHNLSLHPSTLQLVQN-SGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSW---GPLALFPVAAKALP  212 (574)
Q Consensus       138 ~~~l~~~~~~s~~~~~l~~s-~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~---~~~~~~~~~~~~~~  212 (574)
                      ++++.+++|.+.++.++... ...++..+ .++.|+++||+     +||+.+.++.++..+..   ..++...++   ..
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-----g~~~~l~i~~~l~~l~~l~~~~l~~~~~~---~~  317 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-----SLFRALMIFGILQGVSNAGYWLLSITDKN---LY  317 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhcccc---HH
Confidence            34566678999999999874 44555555 67889999996     33344443433333322   222222221   22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 008185          213 NLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLA  292 (574)
Q Consensus       213 ~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~  292 (574)
                      .+.+..++..++.+.......++..+..+++.++..+++.+...++|.++++.++|++.+..||+..|.+.+++.++..+
T Consensus       318 ~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~  397 (491)
T PRK11010        318 SMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLL  397 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            23333444343334333444577788888888899999999988999998989999999999999999998888877666


Q ss_pred             Hhhhcccc
Q 008185          293 ISFSAREE  300 (574)
Q Consensus       293 ~~~~lpEt  300 (574)
                      ...+++++
T Consensus       398 ~~~~~~~~  405 (491)
T PRK11010        398 LLLVCRQT  405 (491)
T ss_pred             HHHHHHhc
Confidence            65555554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.76  E-value=3.2e-07  Score=95.60  Aligned_cols=170  Identities=18%  Similarity=0.082  Sum_probs=116.3

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      ++.++. ....+++..... ..+..+.+++++..|++...+++++-++-++..+ ..+.|.++||      +.+..+...
T Consensus       210 ~p~v~~-~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr------~~~~~l~~~  282 (394)
T COG2814         210 RPGVLL-GLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR------GPRRALIAA  282 (394)
T ss_pred             CchHHH-HHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc------cchhHHHHH
Confidence            444444 333333322222 4455566788999999999999999999888777 6688999997      233344445


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccCccchHHHHHHHHHHHHHHHHHHHH
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQ--KNGIVGLQSYAFMAAASGGILGNLFGG  268 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~--~~~rg~~~s~~~~~~~~G~~igp~igg  268 (574)
                      ..+.+++...+.+.+++   ....++..++-++......   ..+..+..+  ++.++.++++.....++|..+|..+||
T Consensus       283 ~~l~a~~~l~l~~~~~~---~~~~~~~~~~wg~a~~~~~---~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG  356 (394)
T COG2814         283 LLLLALALLALTFTGAS---PALALALLFLWGFAFSPAL---QGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGG  356 (394)
T ss_pred             HHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHhhhhh---hHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666554   2223333444333333322   334444443  477888899999999999999999999


Q ss_pred             HhhccCChhHHHHHHHHHHHHHHHHhh
Q 008185          269 YFLLKTPPTTMFLVFAVLLSLQLAISF  295 (574)
Q Consensus       269 ~l~~~~gwr~~f~i~ai~~~~~~~~~~  295 (574)
                      .+.++.|+..+.|+.+++.++..++.+
T Consensus       357 ~v~~~~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         357 LVLDALGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988887776654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.76  E-value=1.9e-07  Score=106.04  Aligned_cols=160  Identities=14%  Similarity=0.104  Sum_probs=109.5

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      ...+|+++.+.+++.....+|.+++.++.+++.+|+|+|+.++++.++.+++.++.. +..         +.+..++. -
T Consensus       194 ~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~a-fa~---------s~~~llv~-R  262 (742)
T TIGR01299       194 EKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSS-FVQ---------GYGFFLFC-R  262 (742)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHh---------hHHHHHHH-H
Confidence            356889999999998889999999999999999999999998887766655443321 111         11111111 2


Q ss_pred             HHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccC-----CCCChhHHHHHHHH
Q 008185          443 LAETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFG-----DYSSLPVGIVIQFL  516 (574)
Q Consensus       443 l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~-----~~~~l~~~~li~~~  516 (574)
                      +..+++ +.......+++.|.+|++.||..+++......+|..+++.++..+...+|+...     ...+...+++++++
T Consensus       263 ~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~l  342 (742)
T TIGR01299       263 LLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAF  342 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHH
Confidence            222223 222333467889999999999999999999999999999988888776664311     11123344555555


Q ss_pred             HHHHHHHHHHhcCCCHH
Q 008185          517 AALLPLIWIHNVPMSET  533 (574)
Q Consensus       517 ~~ll~l~~~~~vp~~~~  533 (574)
                      ..++.+++.+++||...
T Consensus       343 p~ll~ll~~~~lPESPr  359 (742)
T TIGR01299       343 PCVFAIGALTFMPESPR  359 (742)
T ss_pred             HHHHHHHHHHHcCCCHH
Confidence            55555666778998854

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10504 putative transporter; Provisional

Probab=98.75  E-value=2.3e-07  Score=100.89  Aligned_cols=136  Identities=13%  Similarity=-0.021  Sum_probs=95.5

Q ss_pred             hhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHH
Q 008185          135 LALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPN  213 (574)
Q Consensus       135 ~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~  213 (574)
                      ...+++++..+|.++.+.++......++... .++.|+++||+     +||+.+..+.++..+...++....... ....
T Consensus       282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  355 (471)
T PRK10504        282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-----GYRRVLVATTLGLALVSLLFMLVALLG-WYYL  355 (471)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHHHHHHhccccc-cHHH
Confidence            3345577767899999999888776665544 68899999985     455556556665555555444433221 1222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 008185          214 LMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPP  276 (574)
Q Consensus       214 l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gw  276 (574)
                      +.+..++.+++.+........++.+..++++++.++++.+....+|..+|+.++|.+.+..|+
T Consensus       356 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        356 LPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            333444555666666666677788888889999999999999999999999999988776554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.74  E-value=1.4e-07  Score=98.49  Aligned_cols=132  Identities=13%  Similarity=0.012  Sum_probs=94.7

Q ss_pred             ccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcce
Q 008185          356 GSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEV  435 (574)
Q Consensus       356 ~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~  435 (574)
                      ...+.+.++.+|+++.+.|+......++.+++.++.+++.||+++|+.+..+.++.++..+... +...        +.+
T Consensus        22 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~-~~~~--------~~~   92 (366)
T TIGR00886        22 PLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG-LAVQ--------SYS   92 (366)
T ss_pred             HhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHhh--------hHH
Confidence            3344456778999999999999999999999999999999999999998888776665543321 1110        111


Q ss_pred             EEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008185          436 FVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLT  497 (574)
Q Consensus       436 ~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~  497 (574)
                      ..+. ..+..+++.....+...++++.+|+++|+++.++.....++|..+++.+++.+...+
T Consensus        93 ~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  153 (366)
T TIGR00886        93 VLLL-LRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL  153 (366)
T ss_pred             HHHH-HHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            1111 122222333334455677889999999999999999999999999998888777643

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.73  E-value=3.8e-07  Score=96.54  Aligned_cols=163  Identities=11%  Similarity=0.048  Sum_probs=104.3

Q ss_pred             HHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Q 008185          326 SDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVG  405 (574)
Q Consensus       326 ~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~  405 (574)
                      ....+++.++.+...+....+ .+....+...+.|+-.++++-.+...|.+.+....|.++.-++..++.++.|.-+++.
T Consensus       362 a~~~~~~~s~~~llff~~av~-mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~  440 (618)
T KOG3762|consen  362 ADVGKVFASPHILLFFFVAVV-MGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMY  440 (618)
T ss_pred             HHHHHHhcCCCEEehhHHHHH-HHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceee
Confidence            344455666655443222222 1112222223345556677777777888888888889888888899999999888877


Q ss_pred             HHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHH-HhHHH
Q 008185          406 AVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASAL-CLSSI  484 (574)
Q Consensus       406 ~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~-~lg~~  484 (574)
                      ++..+.+.=.+    ...      .+.+.|.++-.-.+-...-...+.....+++..+|++.++++.|++.... .+|..
T Consensus       441 lgLa~~~~Rf~----~~S------~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g  510 (618)
T KOG3762|consen  441 LGLACNVGRFL----YYS------YLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKG  510 (618)
T ss_pred             ehhhHHHHHHH----HHH------HhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcc
Confidence            66444433221    111      12344555443333322223334444567888999999999999998876 68999


Q ss_pred             HHHHHHHHHHHhhCc
Q 008185          485 ASGFLGVGLASLTGI  499 (574)
Q Consensus       485 lg~~i~g~l~~~~g~  499 (574)
                      +|+++||.+.+.+|.
T Consensus       511 ~GslIGG~~v~~fg~  525 (618)
T KOG3762|consen  511 LGSLIGGFVVERFGA  525 (618)
T ss_pred             hhhhhhhhhheeehh
Confidence            999999999998774

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.69  E-value=2.5e-07  Score=98.99  Aligned_cols=140  Identities=13%  Similarity=0.093  Sum_probs=88.8

Q ss_pred             hhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHH
Q 008185          136 ALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNL  214 (574)
Q Consensus       136 ~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l  214 (574)
                      ..+.++++ .|.++.+.+...++..++..+ .+++|+++||+     +||+.+..+.++..+............  ...+
T Consensus       253 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  324 (426)
T PRK12307        253 LLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-----GLKKTFSIGLLMSFLFIFPLFRIPQDN--YLLL  324 (426)
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHcccc--HHHH
Confidence            34556665 689999888888777766554 78899999985     345555555555444443333322211  1111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVF  283 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~  283 (574)
                      .++.+...++...........+.|..|++.||.++|+.+....+|..+||.++|++.+..|+....++.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        325 GACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFI  393 (426)
T ss_pred             HHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            111111111111112223466789999999999999998888999999999999999988877654444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.69  E-value=1.2e-07  Score=100.97  Aligned_cols=128  Identities=12%  Similarity=0.097  Sum_probs=92.2

Q ss_pred             eehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEee
Q 008185          360 CYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLC  439 (574)
Q Consensus       360 ~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~  439 (574)
                      .++.+++|+++.+.|+......++..+...+.+++.||+++|+++..+.++.++..+.. ...         ++.+..+.
T Consensus        35 ~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~-~~~---------~~~~~l~~  104 (400)
T PRK11646         35 IRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM-AIA---------HEPWLLWL  104 (400)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH-HHh---------ccHHHHHH
Confidence            35667899999999999888888887778888999999999999888777666544332 111         11111111


Q ss_pred             hhHHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          440 FAGLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       440 ~~~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                       ..+..+++. ....+..+++.+.+|++.+++++|+.+...++|..+||.+++.+. ..|+
T Consensus       105 -~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~  163 (400)
T PRK11646        105 -SCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDF  163 (400)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence             122222332 223334677889999999999999999999999999999999987 4443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.69  E-value=3.1e-07  Score=97.66  Aligned_cols=128  Identities=21%  Similarity=0.139  Sum_probs=93.7

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      ..+.+|+++.+.|+......++..++.++.+++.||+++|+++..+.++.++..+... +.         ++.+..+. .
T Consensus        46 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~---------~~~~~l~~-~  114 (394)
T PRK10213         46 MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVS-FA---------NSFSLLLI-G  114 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH-HH---------ChHHHHHH-H
Confidence            3467999999999998888889999999999999999999999888777765443321 11         11111111 1


Q ss_pred             HHHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcc
Q 008185          442 GLAETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       442 ~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~  500 (574)
                      -+..+++ +........++.|.+|+++++.+.++.....++|..++|.+++.+.+.+|++
T Consensus       115 r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~  174 (394)
T PRK10213        115 RACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR  174 (394)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence            1222222 2222333567889999999999999999999999999999999999877753

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.69  E-value=1.4e-07  Score=98.03  Aligned_cols=129  Identities=16%  Similarity=0.122  Sum_probs=92.5

Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHH
Q 008185          365 CLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLA  444 (574)
Q Consensus       365 ~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~  444 (574)
                      ..+.++.+.|+......++.+++.++.+++.||+++|+.+..+.++..+..+..... ...    ...+.+..+.. .+.
T Consensus        28 ~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~-~~l  101 (365)
T TIGR00900        28 AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV-ALL----GGLNIWQVYVL-AGI  101 (365)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH-HHc----CCCcHHHHHHH-HHH
Confidence            478889999999999999999999999999999999999888776655544332211 100    00111111111 222


Q ss_pred             HHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          445 ETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       445 ~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      .+++ .....+..+++.|.+|+++|++++|+.+....+|..+|+.+++.+.+..|+
T Consensus       102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~  157 (365)
T TIGR00900       102 LAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI  157 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            2233 233334467889999999999999999999999999999999999887764

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.68  E-value=5.4e-07  Score=95.67  Aligned_cols=149  Identities=9%  Similarity=-0.019  Sum_probs=98.7

Q ss_pred             hHHHHHHhc---CCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHH
Q 008185          137 LNFHMAHNL---SLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALP  212 (574)
Q Consensus       137 ~~~~l~~~~---~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~  212 (574)
                      .+.++++.+   +.+....+...++..+... ..+..|++.||+     +||+.+.++..+..+.+.+..... +   .+
T Consensus       238 ~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-----g~~~~l~~~~~l~~l~~~~~~~~~-~---~~  308 (396)
T TIGR00882       238 FANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-----GAKNALLIAGTIMSVRIIGSSFAT-T---AL  308 (396)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHHhcC-C---hH
Confidence            344666654   4556677777777666543 366789999985     455566666666666665544433 2   34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHH-HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 008185          213 NLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSY-AFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQL  291 (574)
Q Consensus       213 ~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~-~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~  291 (574)
                      .+++..++.+++.............+..+++.++...+. .+....+|.++||+++|++.+..||+.+|.+.+++.++..
T Consensus       309 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~  388 (396)
T TIGR00882       309 EVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFT  388 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            445566666666544333333344555555666665555 5677789999999999999999999999999988887766


Q ss_pred             HHh
Q 008185          292 AIS  294 (574)
Q Consensus       292 ~~~  294 (574)
                      ++.
T Consensus       389 ~~~  391 (396)
T TIGR00882       389 LIS  391 (396)
T ss_pred             HHH
Confidence            653

>TIGR00895 2A0115 benzoate transport

Probab=98.67  E-value=1.1e-07  Score=99.95  Aligned_cols=127  Identities=15%  Similarity=0.186  Sum_probs=92.1

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      ..+.+|+++.+.|+......++.+++.++.+++.||+++|+.+..+.++..+..++.. ..         ++.+. +...
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~-~~~~  111 (398)
T TIGR00895        43 ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCA-LA---------TNVTQ-LLIL  111 (398)
T ss_pred             HhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH-Hc---------cchHH-HHHH
Confidence            3456899999999999888899999999999999999999988877666555433211 11         11111 1111


Q ss_pred             HHHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          442 GLAETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       442 ~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      .+..+++ +....+...++.|..|++.|++++|+.+....+|..+++.+++.+.+..|+
T Consensus       112 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895       112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            1222222 233344467789999999999999999999999999999999998887664

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.67  E-value=4.6e-07  Score=96.91  Aligned_cols=124  Identities=10%  Similarity=0.107  Sum_probs=91.3

Q ss_pred             ehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeeh
Q 008185          361 YQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCF  440 (574)
Q Consensus       361 ~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~  440 (574)
                      ..++++|++..+.|+......++..++.+..+++.||+++|+++..+.++..+..+... +..         +.+ .+..
T Consensus        33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~-~~~---------~~~-~l~~  101 (412)
T TIGR02332        33 TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATM-FAT---------GPE-SLYL  101 (412)
T ss_pred             hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHH-Hhc---------CHH-HHHH
Confidence            45678999999999999999999999999999999999999998887776665544321 111         111 1111


Q ss_pred             hHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          441 AGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       441 ~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      .-+..+++.....|. ..++.|.+|+++||++.|+++....+|..+++.+++.+.+
T Consensus       102 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  157 (412)
T TIGR02332       102 LRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA  157 (412)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222333333333444 4568999999999999999999999999999999988765

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.63  E-value=3.3e-07  Score=96.25  Aligned_cols=126  Identities=10%  Similarity=0.071  Sum_probs=92.0

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHH
Q 008185          364 QCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGL  443 (574)
Q Consensus       364 ~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l  443 (574)
                      +.+|+++.+.++......++..++..+.+++.||+++|+.+..+.++.++..+... ..         ++.+..+....+
T Consensus        19 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~-~~---------~~~~~~~~~~~l   88 (377)
T PRK11102         19 ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA-LA---------QTIDQLIYMRFL   88 (377)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH-HH---------ccHHHHHHHHHH
Confidence            56899999999999999999999999999999999999988877766655544321 11         111111111122


Q ss_pred             HHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          444 AETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       444 ~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      ..........+...++.+..|+++|++++++.+....+|..+++.+++.+.+..++
T Consensus        89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  144 (377)
T PRK11102         89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSW  144 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence            22222233344567788999999999999999999999999999999999887664

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.63  E-value=4.2e-07  Score=96.06  Aligned_cols=127  Identities=9%  Similarity=-0.004  Sum_probs=91.1

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      ..+++|++..+.|+......++.+++.++.+++.||+++|+.+..+.++.++..+.. ...         ++.+..+.. 
T Consensus        29 ~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~-~~~---------~~~~~l~~~-   97 (382)
T PRK10091         29 LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF-TLS---------SSYLMLAIG-   97 (382)
T ss_pred             HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH-HHh---------CcHHHHHHH-
Confidence            456799999999999999999999999999999999999999888877766544322 111         111111111 


Q ss_pred             HHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          442 GLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       442 ~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      .+..+++. .......+++.+.+|+++++.++++......+|..+++.+++.+.+..|+
T Consensus        98 r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  156 (382)
T PRK10091         98 RLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSW  156 (382)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccH
Confidence            12222222 22222345678899999999999999998999999999999988876654

>PRK15075 citrate-proton symporter; Provisional

Probab=98.62  E-value=8.5e-07  Score=95.51  Aligned_cols=136  Identities=19%  Similarity=0.101  Sum_probs=82.3

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHH-HHhhcccCccchHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSW-GPLALFPVAAKALPNL  214 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~-~~~~~~~~~~~~~~~l  214 (574)
                      .+.++++.+|.+..+.++...++.++..+ .+++|+++||+   | ||| .+..+....++.. .......... ....+
T Consensus       261 ~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~---g-~r~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  334 (434)
T PRK15075        261 TPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI---G-RRP-VLIAFTVLAILTAYPALSWLVAAP-SFARM  334 (434)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-chH-HHHHHHHHHHHHHHHHHHHHHcCC-chHHH
Confidence            45577777899999888877776665544 77899999996   2 444 4443333322211 1111111111 12222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHH-HHHHHHHHHHHHHHHhhccCChhH
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFM-AAASGGILGNLFGGYFLLKTPPTT  278 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~-~~~~G~~igp~igg~l~~~~gwr~  278 (574)
                      .+..++.+++.+........++.|..|+++|+..+++.+. +..++..++|.+.|++.+..|+++
T Consensus       335 ~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~  399 (434)
T PRK15075        335 LAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA  399 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence            2323333334444333344678899999999999987544 444567789999999999888654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.62  E-value=1.1e-06  Score=94.60  Aligned_cols=156  Identities=14%  Similarity=0.060  Sum_probs=86.7

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhh-hhhhhheeeccccccCCCccchhHhHHHHHHHHHHH-HhhcccCccchHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPM-VAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWG-PLALFPVAAKALPNL  214 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~-~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~-~~~~~~~~~~~~~~l  214 (574)
                      .+.++.+++|.+..+.++..++..+.. ..+++.|+++||+     +||+.+.++..+..+... ......... .....
T Consensus       266 lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  339 (432)
T PRK10406        266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-----GRRTSMLCFGSLAALFTVPILSALQNVS-SPYAA  339 (432)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHH
Confidence            445777778999988888777765544 4488899999985     344444433333222221 111111111 11111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHH-HHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHH
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAA-SGGILGNLFGGYFLLKTP-PTTMFLVFAVLLSLQLA  292 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~-~G~~igp~igg~l~~~~g-wr~~f~i~ai~~~~~~~  292 (574)
                      +.+.++..++.+........++.|..|++.|+.++|+.+.... ++....|.+.+.+ +..| |...++..++..++..+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~  418 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFL  418 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHH
Confidence            1222222222222223345678999999999999998776544 3333488888865 4445 55556655555555444


Q ss_pred             Hhhhccc
Q 008185          293 ISFSARE  299 (574)
Q Consensus       293 ~~~~lpE  299 (574)
                      ..+++++
T Consensus       419 ~~~~l~~  425 (432)
T PRK10406        419 VSLMLHR  425 (432)
T ss_pred             HHHHhhh
Confidence            4455444

>PRK11043 putative transporter; Provisional

Probab=98.61  E-value=3.8e-07  Score=96.92  Aligned_cols=127  Identities=13%  Similarity=0.060  Sum_probs=89.7

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      ..+.+|.++.+.|+......++..++..+.+++.||+++|+.+..+.++..+..+.. ...         ++.+. +...
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~---------~~~~~-l~~~  100 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM-LWV---------ESAAQ-LLVL  100 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH-HHh---------cCHHH-HHHH
Confidence            346789999999999999999999999999999999999999887766655443321 111         11111 1111


Q ss_pred             HHHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          442 GLAETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       442 ~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      .+..+++ .........+..|..|++.++..++..+....++..++|.+++.+.+..|+
T Consensus       101 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~  159 (401)
T PRK11043        101 RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGW  159 (401)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence            1122222 122222346678889999999999999988999999999999999887664

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.60  E-value=5.2e-07  Score=95.58  Aligned_cols=126  Identities=10%  Similarity=0.052  Sum_probs=89.6

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      .+.+|.++.+.++......++..++.++.+++.||+++|+.+..+.++..+..+... ..         ++.+..+.. .
T Consensus        30 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~-~~---------~~~~~~~~~-~   98 (392)
T PRK10473         30 AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS-LA---------ETSSLFLAG-R   98 (392)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH-Hh---------CcHHHHHHH-H
Confidence            456899999999998888899999999999999999999998887766655443221 11         111111111 1


Q ss_pred             HHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          443 LAETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       443 l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      +..+++ .....+...++.|..|+++|+++.++.+...+++..++|.+++.+.+..|+
T Consensus        99 ~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~  156 (392)
T PRK10473         99 FLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPW  156 (392)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCh
Confidence            112222 222333456788999999999999999999999999999998887765553

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.58  E-value=9.9e-07  Score=93.76  Aligned_cols=147  Identities=14%  Similarity=0.061  Sum_probs=101.9

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      ...++.++.+.++......++..+..++.+++.||+++|+++.++.++.++..+... +..  +       .   +. .-
T Consensus        30 ~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~-~~~--~-------~---~~-~r   95 (393)
T PRK11195         30 LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML-FGI--H-------P---LL-AY   95 (393)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH-HHH--H-------H---HH-HH
Confidence            345777888889988888889999999999999999999999988877665443221 111  1       0   11 11


Q ss_pred             HHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHH
Q 008185          443 LAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLP  521 (574)
Q Consensus       443 l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~  521 (574)
                      +..+++.....|. .+++.|++|+++++++.|+.+...++|..+||.++|.+.+..         ....+.+.++..++.
T Consensus        96 ~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~---------~~~~~~i~~~~~~~~  166 (393)
T PRK11195         96 GLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH---------AEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence            2233444344454 678999999999999999999999999999999999998853         122223333333334


Q ss_pred             HHHHHhcCCCH
Q 008185          522 LIWIHNVPMSE  532 (574)
Q Consensus       522 l~~~~~vp~~~  532 (574)
                      ++....+||.+
T Consensus       167 ~~~~~~l~~~~  177 (393)
T PRK11195        167 ALFNLFIPRLG  177 (393)
T ss_pred             HHHHhcCCCCc
Confidence            44456677643

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.57  E-value=2.3e-06  Score=90.46  Aligned_cols=141  Identities=15%  Similarity=0.183  Sum_probs=96.5

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHH
Q 008185          138 NFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMA  216 (574)
Q Consensus       138 ~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~  216 (574)
                      +.+++ +.|.+..+.+...++..+.... .++.|++.||+     ++|..+..+.+...+.+.+++..+ +   .+.+++
T Consensus       229 ~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~l~~~~~~~~~~~~~~~~~~-~---~~~~~~  298 (382)
T PRK11128        229 AIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-----SARDLLLLSAICGVVRWGLMGSTT-A---LPWLIV  298 (382)
T ss_pred             HHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHhhh-h---HHHHHH
Confidence            44555 4899999999988877665444 67789999984     455566667666666666555443 2   444556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHH-HHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 008185          217 CVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAF-MAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQ  290 (574)
Q Consensus       217 ~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~-~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~  290 (574)
                      ..++.+++.+...+....++.+. +++++++.++..+ ....+|..+||.++|.+.+..|+ ..|+..+++.++.
T Consensus       299 ~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        299 IQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            66776776666555555555554 4455677888775 44567889999999999999888 5677666665443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.57  E-value=5e-07  Score=94.03  Aligned_cols=131  Identities=18%  Similarity=0.185  Sum_probs=88.5

Q ss_pred             HHHHHHhcCCChhHHHHHHHHh-hhhhhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccc-------
Q 008185          138 NFHMAHNLSLHPSTLQLVQNSG-NLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAK-------  209 (574)
Q Consensus       138 ~~~l~~~~~~s~~~~~l~~s~~-~l~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~-------  209 (574)
                      +++++. +|++....+.+.... ..|..++|+.|..|||-..+.+||||++..+.+...++..+..++++-..       
T Consensus        56 tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~  134 (498)
T KOG0637|consen   56 TPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNER  134 (498)
T ss_pred             cHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc
Confidence            346555 899888777665544 45778899999999998888779999999988888888777766554210       


Q ss_pred             h------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccc-hHHHHHHHHHHHHHHHHHHHHH
Q 008185          210 A------LPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVG-LQSYAFMAAASGGILGNLFGGY  269 (574)
Q Consensus       210 ~------~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~-~~s~~~~~~~~G~~igp~igg~  269 (574)
                      .      ....++...+.-+..-....+..++.+|...++++.+ +.+++....++|.++|..+|++
T Consensus       135 ~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  135 KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence            0      0001111112223333344455788999986533333 7888888889999999888874

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.57  E-value=5.9e-07  Score=97.72  Aligned_cols=155  Identities=11%  Similarity=-0.044  Sum_probs=96.5

Q ss_pred             HHhcCCChhHHHHHHHHhhhhh-hhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhccc-CccchHHHHHHHHH
Q 008185          142 AHNLSLHPSTLQLVQNSGNLPM-VAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFP-VAAKALPNLMACVL  219 (574)
Q Consensus       142 ~~~~~~s~~~~~l~~s~~~l~~-~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~  219 (574)
                      .+++|.+....++......+.. ...++.|+++||+     +||+.++.+.++.+++..+++... .+.... ....+.+
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~-~~~~~~~  371 (479)
T PRK10077        298 FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-----GRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALLSML  371 (479)
T ss_pred             HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-----cChHHHHHhHHHHHHHHHHHHHHHhcCcccH-HHHHHHH
Confidence            3457887766665554444433 3367889999985     466666667766666655544332 111111 1122222


Q ss_pred             HHHHHHHHH-HHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHH------HhhccCChhHHHHHHHHHHHHHHH
Q 008185          220 LSNLGASIT-EVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGG------YFLLKTPPTTMFLVFAVLLSLQLA  292 (574)
Q Consensus       220 l~~~g~~~~-~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg------~l~~~~gwr~~f~i~ai~~~~~~~  292 (574)
                      +.+.+.+.. .+....++.|..|+++|+.++++......+|.++++.+.+      ++.+..+|++.|++.+++.++..+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (479)
T PRK10077        372 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL  451 (479)
T ss_pred             HHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHH
Confidence            222222221 1234677899999899999999888877777777755544      444678999999998887777666


Q ss_pred             Hh-hhcccccc
Q 008185          293 IS-FSAREESL  302 (574)
Q Consensus       293 ~~-~~lpEt~~  302 (574)
                      +. ++.||++.
T Consensus       452 ~~~~~~~e~~~  462 (479)
T PRK10077        452 FMWKFVPETKG  462 (479)
T ss_pred             HHHhccccCCC
Confidence            65 46788764

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.55  E-value=1.5e-06  Score=92.14  Aligned_cols=150  Identities=14%  Similarity=0.032  Sum_probs=95.3

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhh-hhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH-HHHhhcccC-ccchHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNL-PMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS-WGPLALFPV-AAKALP  212 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l-~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~-~~~~~~~~~-~~~~~~  212 (574)
                      .+.+++| .|.++++++++...... ...+ ..+.|++.||+     ++|+.+.++.....+. ......... ......
T Consensus       231 ~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (390)
T TIGR02718       231 SKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-----GLWRTFILGVGLAGSLALLWFAQAAFWLAPGIA  304 (390)
T ss_pred             hhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHH
Confidence            3446666 79999999998877653 4445 45789999985     4555555444433121 111111100 000112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 008185          213 NLMACVLLSNLGASITEVAKDALVAEYGQK-NGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQL  291 (574)
Q Consensus       213 ~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~-~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~  291 (574)
                      .+.....+++++.+.......+.+.+..++ ++++..+++.+....+|..+||.++|++.+..|++..|++.+++.++..
T Consensus       305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       305 VAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            222333344444444444445555566655 7889999999999999999999999999999999999998876665544


Q ss_pred             H
Q 008185          292 A  292 (574)
Q Consensus       292 ~  292 (574)
                      +
T Consensus       385 ~  385 (390)
T TIGR02718       385 L  385 (390)
T ss_pred             H
Confidence            3

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.54  E-value=2.3e-06  Score=93.83  Aligned_cols=151  Identities=19%  Similarity=0.094  Sum_probs=116.1

Q ss_pred             hhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhh-hheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHH
Q 008185          135 LALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKP-LYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPN  213 (574)
Q Consensus       135 ~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~p-l~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~  213 (574)
                      .-+|.+.++++|.++...|++.+.+.++.+++- +.+.+.++.     ++...+..+.+..+++...+++.++    .+.
T Consensus       239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-----~~~~lv~~~~~~~a~~~~~lal~~~----~~~  309 (524)
T PF05977_consen  239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-----SSRRLVLLASLLFALALLLLALSPS----FWL  309 (524)
T ss_pred             HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CcchhhHHHHHHHHHHHHHHhcchH----HHH
Confidence            335667788899999999999999988887754 467777763     3444555677777777777766643    344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 008185          214 LMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI  293 (574)
Q Consensus       214 l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~  293 (574)
                      .++..++.|++...........+-...|++.||+.++++.+....+..+|..+.|++.+..|.+..+.+.++..++..++
T Consensus       310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  310 ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            45566677777777777777778888899999999999999999999999999999999999999998877665555554


Q ss_pred             h
Q 008185          294 S  294 (574)
Q Consensus       294 ~  294 (574)
                      .
T Consensus       390 ~  390 (524)
T PF05977_consen  390 A  390 (524)
T ss_pred             H
Confidence            3

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.54  E-value=1.2e-06  Score=92.17  Aligned_cols=151  Identities=17%  Similarity=0.069  Sum_probs=97.9

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      .+++|+++.+.|+......++..++....+++.||+++|+++..+.+ ..+...... .. .       ++ +..+...-
T Consensus        18 ~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~-~~~~~~~~~-~~-~-------~~-~~~l~~~R   86 (368)
T TIGR00903        18 AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLA-TFAAAAGRL-LD-P-------FN-YEWLLACQ   86 (368)
T ss_pred             HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHH-HH-h-------cc-HHHHHHHH
Confidence            45689999999999888888888888889999999998876554433 222221111 10 0       11 11111112


Q ss_pred             HHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHH-HHHHHHHH
Q 008185          443 LAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVI-QFLAALLP  521 (574)
Q Consensus       443 l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li-~~~~~ll~  521 (574)
                      +..++++....+....++|..|+++|+++.++.+....+|..+++.+++.+.+..||+        ..+.+ ..+..+..
T Consensus        87 ~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr--------~~f~~~~~l~~~~~  158 (368)
T TIGR00903        87 LLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQ--------LLIIPIAAVAAAGI  158 (368)
T ss_pred             HHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------HHHHHHHHHHHHHH
Confidence            2223333233444556689999999999999999999999999999999998877653        22333 33323334


Q ss_pred             HHHHHhcCCCH
Q 008185          522 LIWIHNVPMSE  532 (574)
Q Consensus       522 l~~~~~vp~~~  532 (574)
                      +++.+++||.+
T Consensus       159 ~~~~~~lp~~p  169 (368)
T TIGR00903       159 ILVLAALPALP  169 (368)
T ss_pred             HHHHHHcCCCC
Confidence            44556788753

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.53  E-value=9.4e-07  Score=94.87  Aligned_cols=128  Identities=16%  Similarity=0.141  Sum_probs=87.0

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACV  218 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (574)
                      +.+..++ ++.+.+++.++..++..+ .|++|+++||+     +||..+.++.++.+++...+.+.+++   ...++++.
T Consensus       248 ~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  318 (437)
T TIGR00792       248 YFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-----GRKILFAGGILLMVLGYLIFFFAGSN---LPLILVLI  318 (437)
T ss_pred             eEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHcchh---HHHHHHHH
Confidence            4444445 455666666666665544 78899999985     45555556666666665555444322   33344555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhc-------ccCccchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 008185          219 LLSNLGASITEVAKDALVAEYGQ-------KNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPP  276 (574)
Q Consensus       219 ~l~~~g~~~~~~~~~a~i~d~~~-------~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gw  276 (574)
                      ++.+++.+.......++++|..+       ++.+|..+++.+....+|..+|+.++|++.+..|+
T Consensus       319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       319 ILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            66667776666666778887754       34568889999999999999999999999876665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.51  E-value=5.3e-07  Score=98.12  Aligned_cols=128  Identities=11%  Similarity=-0.039  Sum_probs=94.1

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      ..+.+|.++.+.++......++.+++.++.+++.||+++|+.+..+.++..+..++.. ..         ++... +...
T Consensus        28 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~---------~~~~~-l~~~   96 (485)
T TIGR00711        28 IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG-VA---------PNLEL-MIIF   96 (485)
T ss_pred             HHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-Cc---------CCHHH-HHHH
Confidence            3456899999999999999999999999999999999999998888776665544321 11         11111 1112


Q ss_pred             HHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcc
Q 008185          442 GLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       442 ~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~  500 (574)
                      .+..+++. ........++.|.+|++.|+++++++.....+|..+|+.+++.+.+..|+.
T Consensus        97 ~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~  156 (485)
T TIGR00711        97 RVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR  156 (485)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCce
Confidence            22223332 223334677889999999999999999999999999999999998876653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.50  E-value=3.6e-06  Score=89.64  Aligned_cols=156  Identities=13%  Similarity=0.007  Sum_probs=99.8

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhccc-CccchHHHHH
Q 008185          138 NFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFP-VAAKALPNLM  215 (574)
Q Consensus       138 ~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~-~~~~~~~~l~  215 (574)
                      +.++.+++|.++.+.++......++..+ .++.|+++||+     +||..+.++.++..++..++...+ ........++
T Consensus       239 p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  313 (406)
T PRK15402        239 PVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-----PLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLT  313 (406)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence            4466777899999988876655555555 67889999985     444555556555544444443322 0011133344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh-
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS-  294 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~-  294 (574)
                      +..++.++|.+........... ...++++|+..+..+....+|..+|+.+++.+.+..++....+..++...+..+.. 
T Consensus       314 ~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK15402        314 AGLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVR  392 (406)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHH
Confidence            4555556666554443333332 33447899999999999999999999999999888888887777655555554443 


Q ss_pred             hhccc
Q 008185          295 FSARE  299 (574)
Q Consensus       295 ~~lpE  299 (574)
                      ++.+.
T Consensus       393 ~~~~~  397 (406)
T PRK15402        393 IFLKD  397 (406)
T ss_pred             HHhcc
Confidence            34444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.45  E-value=1.1e-06  Score=90.92  Aligned_cols=152  Identities=20%  Similarity=0.175  Sum_probs=100.4

Q ss_pred             hhhhHHHHHHhcCCChhHHHHHHHHhhhhh-hhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCcc---c
Q 008185          134 WLALNFHMAHNLSLHPSTLQLVQNSGNLPM-VAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAA---K  209 (574)
Q Consensus       134 ~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~-~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~---~  209 (574)
                      ...++.+++++|+.++.+++...+.+.+.- .+.|+.|+||||+   | +||..+. ....++++..++....+..   .
T Consensus       238 s~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~---G-g~rv~~~-~f~~~~~~~~~l~~~~~~~~~~~  312 (417)
T COG2223         238 SAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI---G-GRRVTLA-VFVGMALAAALLSLFLTGFGHGG  312 (417)
T ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc---c-chhHHHH-HHHHHHHHHHHHHccccccccCc
Confidence            344556889999999999998888887654 5699999999997   4 4544443 4444455555555543211   1


Q ss_pred             hHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHH
Q 008185          210 ALPNLM----ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP-PTTMFLVFA  284 (574)
Q Consensus       210 ~~~~l~----~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g-wr~~f~i~a  284 (574)
                      .....+    ...++.++|.+.    .-.++..+.+ ++.|.+.++..+...+|+..-|..-|...+..| +...|++..
T Consensus       313 ~~~~~~~~~l~l~~~~G~GnGs----vfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~  387 (417)
T COG2223         313 SFVVFVAVFLALFVFAGLGNGS----VFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLL  387 (417)
T ss_pred             chHHHHHHHHHHHHHhccCcch----heeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHH
Confidence            111111    222233344332    2344555554 466778888888888888888888888888777 999999998


Q ss_pred             HHHHHHHHHhh
Q 008185          285 VLLSLQLAISF  295 (574)
Q Consensus       285 i~~~~~~~~~~  295 (574)
                      ...+++.+..+
T Consensus       388 ~~~~~a~v~~~  398 (417)
T COG2223         388 AFYLVALVLTW  398 (417)
T ss_pred             HHHHHHHHHHH
Confidence            88887777643

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.45  E-value=8.1e-05  Score=78.18  Aligned_cols=168  Identities=16%  Similarity=0.115  Sum_probs=102.4

Q ss_pred             HHHHHHHhhhccchhhhhHHHHHHh-cCCChhHHHHHHHHhhh---hhh-hhhhheeeccccccCCCccchhHhHHHHHH
Q 008185          120 CGLGYWVQGFRCFPWLALNFHMAHN-LSLHPSTLQLVQNSGNL---PMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQ  194 (574)
Q Consensus       120 ~~~~~f~~~~~~~~~~~~~~~l~~~-~~~s~~~~~l~~s~~~l---~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~  194 (574)
                      +++..|...+.- ..+.+.+|+.+. .|++.+++.=  -++-+   .+. +-.+...++|.+     |-||.++++.+..
T Consensus        10 lc~~gf~~~frP-sEPfl~~yL~~~~kn~T~~qv~~--~i~Pv~tYSyl~~l~~vflltd~l-----~Ykpviil~~~~~   81 (412)
T PF01770_consen   10 LCLFGFFKEFRP-SEPFLTPYLTGPDKNFTEEQVNN--EIYPVWTYSYLAFLLPVFLLTDYL-----RYKPVIILQALSY   81 (412)
T ss_pred             HHHHHHHHhcCC-CCccchHHHcCCccCCCHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHH
Confidence            444456656653 112222355554 7888777642  11111   111 122456789974     7889999888877


Q ss_pred             HHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc--
Q 008185          195 ILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL--  272 (574)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~--  272 (574)
                      .+.+.++.+..+    ...+-+.-++-+++.+ ++++..+++--..++++-.++.+...++..+|-.+|.++|-.++.  
T Consensus        82 i~t~~lll~~~s----v~~mq~~q~~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~  156 (412)
T PF01770_consen   82 IITWLLLLFGTS----VLAMQLMQFFYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG  156 (412)
T ss_pred             HHHHHHHHHHCc----HHHHHHHHHHHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777776655532    3444445444454443 466777777777777666667777778778888888888887765  


Q ss_pred             cCChhHHHHHHHHHHHHHHHHhhhcccc
Q 008185          273 KTPPTTMFLVFAVLLSLQLAISFSAREE  300 (574)
Q Consensus       273 ~~gwr~~f~i~ai~~~~~~~~~~~lpEt  300 (574)
                      ..+.+..+++......+.++..+++|..
T Consensus       157 ~~sy~~L~~isl~~~~~a~~~~~fLP~~  184 (412)
T PF01770_consen  157 GVSYFQLNYISLASVSLALLIALFLPMP  184 (412)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4456777777665555555556677654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.45  E-value=4.4e-06  Score=88.96  Aligned_cols=151  Identities=17%  Similarity=0.105  Sum_probs=86.9

Q ss_pred             HHHHhcCCChhHHHHHHHHhh-hhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHH---HhhcccCccchHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGN-LPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWG---PLALFPVAAKALPNL  214 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~-l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~---~~~~~~~~~~~~~~l  214 (574)
                      ++.+++|.++++.+++.+... ++..+ .++.|+++||+     +||+.+.++.....+...   .++..+++   .+.+
T Consensus       235 ~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-----g~~~~l~~~~~~~~l~~l~~~~~~~~~~~---~~~~  306 (402)
T PRK11902        235 FLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-----GLYRSLMLFGVLQAVSNLGYWVLAVTPKH---LWTM  306 (402)
T ss_pred             HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhcCCc---HHHH
Confidence            556678999999999876543 34444 67889999985     344444444443333322   22233222   2223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS  294 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~  294 (574)
                      ++..++..+..+.......+......+++..+..++.......+|.++++.++|.+.+..||++.|.+.++++++..++.
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        307 ALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            33333322222222222223333333333334455665556667777677789999999999999999888777665554


Q ss_pred             hhcc
Q 008185          295 FSAR  298 (574)
Q Consensus       295 ~~lp  298 (574)
                      ...+
T Consensus       387 ~~~~  390 (402)
T PRK11902        387 WLMR  390 (402)
T ss_pred             HHHh
Confidence            4333

>TIGR00898 2A0119 cation transport protein

Probab=98.44  E-value=2.4e-06  Score=93.67  Aligned_cols=147  Identities=16%  Similarity=-0.007  Sum_probs=98.3

Q ss_pred             cCCChhHHHHHHHHhhhhhhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHH
Q 008185          145 LSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLG  224 (574)
Q Consensus       145 ~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g  224 (574)
                      ++.+......+.++..+  ....+.++++||+     +||..+.++.++..++.+++...++..  ....++..++..++
T Consensus       353 ~~~~~~~~~~~~~~~~i--~~~~~~~~l~dr~-----grr~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~  423 (505)
T TIGR00898       353 LGGNIYLDLFISGLVEL--PAKLITLLLIDRL-----GRRYTMAASLLLAGVALLLLLFVPVDL--YFLRTALAVLGKFG  423 (505)
T ss_pred             cCCChHHHHHHHHHHHH--HHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHH
Confidence            45554444333332221  2244678899985     566666666666666666665554321  12223334444555


Q ss_pred             HHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHhhhcccccc
Q 008185          225 ASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAISFSAREESL  302 (574)
Q Consensus       225 ~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~  302 (574)
                      .+........+.+|..|++.|+.++++.+....+|.+++|.+.+ + ...++...+++.++..++..++.+++|||..
T Consensus       424 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~  499 (505)
T TIGR00898       424 ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETKG  499 (505)
T ss_pred             HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            55444555677899999999999999999999999999999998 4 3457788888888777777777778899864

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.43  E-value=3.3e-06  Score=90.41  Aligned_cols=152  Identities=11%  Similarity=0.072  Sum_probs=99.9

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      .+.+|.+..+.+.......++..++.+..+.+.||+++|+++..+.++.+++.+... ..         ++.+. +...-
T Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~-~a---------~~~~~-l~~~r  111 (413)
T PRK15403         43 VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL-FT---------TSMTQ-FLIAR  111 (413)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH-Hc---------CCHHH-HHHHH
Confidence            456899988888888888888888889999999999999998888766655443221 11         11111 11112


Q ss_pred             HHHHHHHhhHHH-HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHH
Q 008185          443 LAETLAQFKLLP-FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLP  521 (574)
Q Consensus       443 l~~~~~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~  521 (574)
                      +..+++.....+ ......|..|++++++.+++.++...+|..+||.+++.+.+..|+.        ..+.+.++..++.
T Consensus       112 ~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~--------~~f~~~~~~~~i~  183 (413)
T PRK15403        112 FIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK--------VLFAIIAVMGLIA  183 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHHHH
Confidence            222333221122 2355778889999999999999999999999999999988876643        2233333333333


Q ss_pred             HHH-HHhcCCCHH
Q 008185          522 LIW-IHNVPMSET  533 (574)
Q Consensus       522 l~~-~~~vp~~~~  533 (574)
                      ++. .+.+||+++
T Consensus       184 ~~~~~~~lp~~~~  196 (413)
T PRK15403        184 FVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHhCCCCcc
Confidence            333 456787643

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.43  E-value=4e-06  Score=88.87  Aligned_cols=126  Identities=15%  Similarity=0.072  Sum_probs=86.9

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      .+.+|+++.+.++......++..++..+.+++.||+++|+.+..+.++..+..+... ..         ++.+. +....
T Consensus        35 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~---------~~~~~-l~~~~  103 (394)
T PRK11652         35 ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL-FA---------HSLTV-LIAAS  103 (394)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH-HH---------ccHHH-HHHHH
Confidence            467999999999999999999999999999999999999988877666554433211 11         11111 11111


Q ss_pred             HHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          443 LAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       443 l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      +..+++.....+. ..+..+..+++.++.+.++.+....++..++|.+++.+.+..|+
T Consensus       104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~  161 (394)
T PRK11652        104 AIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGW  161 (394)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            1122221111222 34566778888899999999888889999999999988876654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.43  E-value=1.7e-06  Score=94.87  Aligned_cols=127  Identities=8%  Similarity=-0.002  Sum_probs=90.9

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      .+.+|.++.+.++......++..+..+..+++.||+++|+++..+.++.++..+... ..         ++.+..+. .-
T Consensus        33 ~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~-~a---------~~~~~li~-~r  101 (495)
T PRK14995         33 SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA-FS---------PTASWLIA-TR  101 (495)
T ss_pred             HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-Hc---------CCHHHHHH-HH
Confidence            456898988999988888888888888999999999999999888777766554321 11         11111111 12


Q ss_pred             HHHHHHHhhHHHH-HHHHHhh-cCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcc
Q 008185          443 LAETLAQFKLLPF-SMLLARL-CPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       443 l~~~~~~~~~~p~-~~l~~~~-~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~  500 (574)
                      +..+++.....|. ...+.+. .|+++|++++|++.....+|..+||.+++.+.+..||.
T Consensus       102 ~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr  161 (495)
T PRK14995        102 ALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG  161 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence            2333343334443 3444454 47789999999999999999999999999999987754

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.43  E-value=2e-06  Score=93.85  Aligned_cols=131  Identities=11%  Similarity=-0.001  Sum_probs=92.2

Q ss_pred             ceeehccc--cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcc
Q 008185          358 MFCYQTQC--LNINPSVIGMSRVIGQSMLLSLTVFYDRYWKK-VPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNE  434 (574)
Q Consensus       358 ~~~~~~~~--~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r-~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~  434 (574)
                      ++.|+++.  +|+++.+.|.......++..++..+.+++.|| +++|+.+..+.++.++..+.. .+.         ++.
T Consensus        33 L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~-~~~---------~~~  102 (475)
T TIGR00924        33 LAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML-AMS---------IYP  102 (475)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH-Hhc---------ccH
Confidence            44566665  89999999999888888999999999999999 899999888877766554321 111         111


Q ss_pred             eEEeehhHHHHHHHHhhH-HHHHHHHHhhcCCCh---hHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          435 VFVLCFAGLAETLAQFKL-LPFSMLLARLCPQGC---EGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       435 ~~~l~~~~l~~~~~~~~~-~p~~~l~~~~~p~~~---~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      + .+....+..+++.... .....+.++.+|++.   |++++++++...++|..+|+.+++.+.+..|+
T Consensus       103 ~-~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~  170 (475)
T TIGR00924       103 D-LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY  170 (475)
T ss_pred             h-HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            1 1111112222332222 233567788887654   88899999999999999999999999887664

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.42  E-value=3.5e-06  Score=91.91  Aligned_cols=125  Identities=13%  Similarity=0.012  Sum_probs=85.9

Q ss_pred             ehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeeh
Q 008185          361 YQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCF  440 (574)
Q Consensus       361 ~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~  440 (574)
                      ...+.+|++..+.|+......++..++.++.+++.+|+++|+.+..+.++..+..++. .+..         +... +..
T Consensus        61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~-~~~~---------s~~~-l~~  129 (476)
T PLN00028         61 IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCM-SLVS---------SATG-FIA  129 (476)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH-HHhc---------CHHH-HHH
Confidence            3456799999999998888888899999999999999999998877666555443321 1111         1111 111


Q ss_pred             hHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008185          441 AGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASL  496 (574)
Q Consensus       441 ~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~  496 (574)
                      ..+..+++.....+....+.+.+|++.||++.|+.++..++|..+++.+.+.+...
T Consensus       130 ~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~  185 (476)
T PLN00028        130 VRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPL  185 (476)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11222222222344445678999999999999999998899998888777666543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.41  E-value=3.7e-06  Score=101.68  Aligned_cols=147  Identities=16%  Similarity=0.147  Sum_probs=104.2

Q ss_pred             hhhHHHHHHhcCCChh-HHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHH
Q 008185          135 LALNFHMAHNLSLHPS-TLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALP  212 (574)
Q Consensus       135 ~~~~~~l~~~~~~s~~-~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~  212 (574)
                      ...+.++++.+|.+.. +.+++.++..++.++ .+++|+++||+     +++..+.++.++.+++..++....+    ..
T Consensus       253 ~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~  323 (1146)
T PRK08633        253 ANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-----IELGLVPLGALGLALSLFLLPTAPS----LA  323 (1146)
T ss_pred             HhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eEccchhHHHHHHHHHHHHHHHhhh----HH
Confidence            3445577888999998 899988888877665 67889999984     3444454555555555555544432    33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc-cCChhHHHHHHHHHHHHH
Q 008185          213 NLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL-KTPPTTMFLVFAVLLSLQ  290 (574)
Q Consensus       213 ~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~-~~gwr~~f~i~ai~~~~~  290 (574)
                      .++++.++.+++.+...+...+++.+..++++||.++++.+....+|.++++.+++.+.. ..++...|++.+.+.++.
T Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  402 (1146)
T PRK08633        324 SVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG  402 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            445556666677776666677888899999999999999999888999889888877654 245666777665554433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.40  E-value=3.4e-06  Score=90.19  Aligned_cols=127  Identities=12%  Similarity=0.023  Sum_probs=91.1

Q ss_pred             ehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeeh
Q 008185          361 YQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCF  440 (574)
Q Consensus       361 ~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~  440 (574)
                      .+++.+|.++.+.|+......++.+++....+++.||+++|+.+..+.++.++..++......       .++.+ .+..
T Consensus        28 ~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-------~~~~~-~~l~   99 (410)
T TIGR00885        28 QFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-------IMNYT-LFLV   99 (410)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-------hccHH-HHHH
Confidence            446789999999999999999999999999999999999999998887776665433211100       01111 1111


Q ss_pred             hHHHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          441 AGLAETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       441 ~~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      ..+..+++ +....+...++.+..|++.+++..++.+...++|..+|+.+++.+..
T Consensus       100 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~  155 (410)
T TIGR00885       100 GLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL  155 (410)
T ss_pred             HHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            12222222 23333345667788899999999999999999999999999988764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.39  E-value=2.1e-06  Score=75.69  Aligned_cols=110  Identities=16%  Similarity=0.098  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHH
Q 008185          379 IGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSML  458 (574)
Q Consensus       379 ~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l  458 (574)
                      ...++.+++..+.+++.||+++|+.+..+.++..+..+.. ...         ++.+.......+.....+........+
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~   75 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF-ALS---------SNITVLIIARFLQGFGAAFALVAGAAL   75 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHH-HHh---------ccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3456777788888899999999998877766555443321 111         111111111112211112222333567


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          459 LARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       459 ~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      ..|..|++++++++++.+...++|..+++.+.+.+.+..+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  115 (141)
T TIGR00880        76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG  115 (141)
T ss_pred             HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc
Confidence            8899999999999999999999999999999998876554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.39  E-value=1e-05  Score=87.81  Aligned_cols=172  Identities=17%  Similarity=0.133  Sum_probs=115.1

Q ss_pred             HhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhc-
Q 008185          126 VQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLAL-  203 (574)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~-  203 (574)
                      ..++..+...+. .+.++++|++..+...+.-+..+..++ ..++|++.||+   |.++|+.+.++..+..+......+ 
T Consensus       294 ~dg~~ti~~~~~-i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~---g~k~~~~l~~~l~~~~~i~~~g~~G  369 (477)
T PF11700_consen  294 SDGVNTIISFAG-IYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF---GPKTKRTLLISLILWIIIPLYGLFG  369 (477)
T ss_pred             HHHHHHHHHHHH-HHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCchhHHHHHHHHHHHHHHHHHHHH
Confidence            444444333333 367878999999877666555554444 55789999986   545445555444433222222221 


Q ss_pred             -ccCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHH
Q 008185          204 -FPVA--AKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP-PTTM  279 (574)
Q Consensus       204 -~~~~--~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g-wr~~  279 (574)
                       ..+.  ...-+.+.++-++.++..+.......++++++.|+++.+..+|++....-....+||++-|.+.+..| -|+.
T Consensus       370 ~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g  449 (477)
T PF11700_consen  370 FWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYG  449 (477)
T ss_pred             hhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence             1000  11123344555555666666666778999999999888999999999999999999999999998776 8898


Q ss_pred             HHHHHHHHHHHHHHhhhccccc
Q 008185          280 FLVFAVLLSLQLAISFSAREES  301 (574)
Q Consensus       280 f~i~ai~~~~~~~~~~~lpEt~  301 (574)
                      ++...++.++.+++.+++++++
T Consensus       450 ~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  450 FLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHHHHHHHHHHHHHhhccchh
Confidence            8888777777776667777654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.38  E-value=6.5e-06  Score=88.54  Aligned_cols=126  Identities=10%  Similarity=-0.040  Sum_probs=82.5

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      ...+|+|+.+.+++.....++..+.....+++.||+|.|+++.++.++..+..+.....+...     .++ +..+....
T Consensus        62 ~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~-----~~s-~~~lli~r  135 (462)
T PRK15034         62 KIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP-----NTP-FGIFIVIA  135 (462)
T ss_pred             hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc-----CCC-HHHHHHHH
Confidence            346999999999887766666666666779999999999998888776654443221111000     011 11111112


Q ss_pred             HHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008185          443 LAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLA  494 (574)
Q Consensus       443 l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~  494 (574)
                      +..++++..+.+....+++.+|++++|++.|+.....++|..+++.+...+.
T Consensus       136 ~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        136 LLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             HHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            2222334455566677899999999999999998888888887766665433

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.37  E-value=8.7e-06  Score=86.63  Aligned_cols=156  Identities=14%  Similarity=0.109  Sum_probs=107.3

Q ss_pred             ehccccCCCchh-HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEee
Q 008185          361 YQTQCLNINPSV-IGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLC  439 (574)
Q Consensus       361 ~~~~~~g~s~~~-~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~  439 (574)
                      ++.+.+|+++.+ .|.++.....+-.+.....+.+.||++.|+++.++.+...+..++..+ ..          .+..+.
T Consensus        51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f-a~----------Sl~~L~  119 (511)
T TIGR00806        51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL-GT----------SVWHMQ  119 (511)
T ss_pred             HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HH----------HHHHHH
Confidence            445689999999 999988888888888888899999999999998887777665543321 11          111111


Q ss_pred             hhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHH
Q 008185          440 FAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAAL  519 (574)
Q Consensus       440 ~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~l  519 (574)
                      ..-+..++++....+...++...+|+++|+++.|+.++...+|.++++.+++. ...+|+.  .|.   .+..+......
T Consensus       120 i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr--~y~---~Ln~Isl~s~~  193 (511)
T TIGR00806       120 LMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWI--SYS---TLNIISLVFMT  193 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCch--hHH---HHHHHHHHHHH
Confidence            11122233332222667788999999999999999999999999999999988 4445643  333   33334444444


Q ss_pred             HHHHHHHhcCCCHH
Q 008185          520 LPLIWIHNVPMSET  533 (574)
Q Consensus       520 l~l~~~~~vp~~~~  533 (574)
                      +++++.+++|..++
T Consensus       194 ~a~~~a~~LP~~~~  207 (511)
T TIGR00806       194 FSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHhCCCCch
Confidence            55666677775444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.36  E-value=4.7e-06  Score=91.18  Aligned_cols=131  Identities=10%  Similarity=-0.004  Sum_probs=89.6

Q ss_pred             eeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEE
Q 008185          359 FCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKK-VPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFV  437 (574)
Q Consensus       359 ~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r-~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~  437 (574)
                      ..|.++.+|++..+.+...........+...+.+++.|| +|+|+.+.++.+++++..++.. +..  +     ....  
T Consensus        38 ~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~-~~~--~-----~~~l--  107 (489)
T PRK10207         38 AVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG-MSL--L-----KPDL--  107 (489)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-Hhc--c-----chhH--
Confidence            345667799998888776655555555556678999999 9999999999888776654322 111  0     0011  


Q ss_pred             eehhHHHHHHHHhhHHH-HHHHHHhhcCCC--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          438 LCFAGLAETLAQFKLLP-FSMLLARLCPQG--CEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       438 l~~~~l~~~~~~~~~~p-~~~l~~~~~p~~--~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      +.......+++.....| ..+++.|.+|++  .|+.+++++....++|..+||.+++.+.+.+|+
T Consensus       108 l~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw  172 (489)
T PRK10207        108 IFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY  172 (489)
T ss_pred             HHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence            11122223344333333 357788999877  457889999999999999999999999998764

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.35  E-value=5.9e-06  Score=89.72  Aligned_cols=133  Identities=15%  Similarity=-0.067  Sum_probs=91.6

Q ss_pred             cceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcce
Q 008185          357 SMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKV-PLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEV  435 (574)
Q Consensus       357 ~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~-~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~  435 (574)
                      .++.|+++.+|+++.+.+.......+...++..+.+++.||+ |+|+.+.++.++.++..++. ... ..      ....
T Consensus        31 ~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll-~~~-~~------~~~~  102 (493)
T PRK15462         31 LLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVL-GAS-EI------HPSF  102 (493)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH-HHh-hc------chhH
Confidence            344566677999999999888887788888888899999999 99998888877766554321 110 00      0011


Q ss_pred             EEeehhHHHHHHHHhhHHH-HHHHHHhhcCCC--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          436 FVLCFAGLAETLAQFKLLP-FSMLLARLCPQG--CEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       436 ~~l~~~~l~~~~~~~~~~p-~~~l~~~~~p~~--~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      ..+  ......++.....| ..+++.|.+|++  .|+++++++....++|..++|.+.+.+.+..|+
T Consensus       103 ~~l--~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw  167 (493)
T PRK15462        103 LYL--SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW  167 (493)
T ss_pred             HHH--HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence            111  11111122222223 356789999875  699999999999999999999999999887764

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.34  E-value=9.9e-06  Score=88.56  Aligned_cols=159  Identities=11%  Similarity=0.141  Sum_probs=112.0

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccch
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKA  210 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~  210 (574)
                      ++..-++.+.+ ..+.+..++..+.++..+.-.+ .+++|+++|+.+   .+++.+..++.+...++...+....+    
T Consensus       316 ~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~---~~~~~~~~~~ll~~gl~~~~~p~~~~----  387 (509)
T KOG2504|consen  316 VPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG---IRALVLFLLTLLIAGLARLFLPFATT----  387 (509)
T ss_pred             HHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc---cchHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            45555555655 5899999999999888776555 889999999852   13333444455555555544444432    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHH
Q 008185          211 LPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP-PTTMFLVFAVLLSL  289 (574)
Q Consensus       211 ~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g-wr~~f~i~ai~~~~  289 (574)
                      +..++..-.+.+++.+.......-.+.|+...++-..+.|+......++.++||.++|.+.+..| |...|+.+++..++
T Consensus       388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~  467 (509)
T KOG2504|consen  388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL  467 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence            44444444444444444443334567888888888899999999999999999999999888777 99999999888877


Q ss_pred             HHHHhhhcc
Q 008185          290 QLAISFSAR  298 (574)
Q Consensus       290 ~~~~~~~lp  298 (574)
                      ..+..+..+
T Consensus       468 s~~~~~~~~  476 (509)
T KOG2504|consen  468 SAVLLLILR  476 (509)
T ss_pred             HHHHHHHhH
Confidence            776665555

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.34  E-value=8.5e-06  Score=79.79  Aligned_cols=149  Identities=13%  Similarity=0.133  Sum_probs=95.9

Q ss_pred             HHHHhcCCChhHHHHHHHHh-hhhhhhhhhheeeccccccCCCccchhHh-HHHHHHHHHHHHhhcccCccchHHHHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSG-NLPMVAKPLYGILSDALYIGGAHRIPYIC-IGVFLQILSWGPLALFPVAAKALPNLMAC  217 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~-~l~~~~~pl~G~lsD~~~~~G~rRk~~l~-i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  217 (574)
                      +.++.||+|+..++-+.+.. .+.....|++|.++|++     +|+.+.+ .+.+...++=..+.+..-++      ...
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-----G~n~~wv~~a~~~tl~~H~~l~Ft~lsP------y~~  358 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-----GFNLWWVASACILTLLGHSGLFFTFLSP------YTS  358 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-----cceehhHHHHHHHHHHHhhhHHhhhccH------HHH
Confidence            45677999999988777654 45566799999999984     5555443 33333333333333322111      233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHh
Q 008185          218 VLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP---PTTMFLVFAVLLSLQLAIS  294 (574)
Q Consensus       218 ~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g---wr~~f~i~ai~~~~~~~~~  294 (574)
                      ..+.++..+........+++-+.|+++-|.+.+..+...++|-.+-|+++|++.+.-|   |--.|.+......+..+..
T Consensus       359 m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgi  438 (459)
T KOG4686|consen  359 MTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGI  438 (459)
T ss_pred             HHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            4444444444443345667778888899999999999999999999999999987654   5556666544444444433


Q ss_pred             -hhccc
Q 008185          295 -FSARE  299 (574)
Q Consensus       295 -~~lpE  299 (574)
                       +.+..
T Consensus       439 l~~~N~  444 (459)
T KOG4686|consen  439 LFYLNK  444 (459)
T ss_pred             Hhheec
Confidence             44433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.33  E-value=3.2e-06  Score=91.43  Aligned_cols=171  Identities=11%  Similarity=0.058  Sum_probs=105.8

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccC--c--Ccc
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWK----KVPLRKLVGAVQILYASSLLLDLILVRQINLQFG--V--PNE  434 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~----r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~--~--~~~  434 (574)
                      .+.+|.++...++......+..++..++.+++.|    |+|+|+.++.+..+..+..+..+..........+  .  ...
T Consensus        31 l~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~  110 (477)
T TIGR01301        31 VQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTK  110 (477)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccch
Confidence            4569999999999999999999999999999998    5999999876544433333322222111000000  0  000


Q ss_pred             ----eEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChh--HHHHHHHHHHHHhHHHHHHHHHHHH--HHhhCcccCC---
Q 008185          435 ----VFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCE--GSLTSFSASALCLSSIASGFLGVGL--ASLTGITFGD---  503 (574)
Q Consensus       435 ----~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~--gt~~gl~~~~~~lg~~lg~~i~g~l--~~~~g~~~~~---  503 (574)
                          ++.+....+..+..+....|..++++|.+|+++|  +.+++..+...++|+.+|+.+++..  .+.++....+   
T Consensus       111 ~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~  190 (477)
T TIGR01301       111 PRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG  190 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence                1111111122233345556778899999998865  6789999999999999999999976  3334432111   


Q ss_pred             --CCChhHHHHHHHHHHHHHHHH-HHhcCCCHH
Q 008185          504 --YSSLPVGIVIQFLAALLPLIW-IHNVPMSET  533 (574)
Q Consensus       504 --~~~l~~~~li~~~~~ll~l~~-~~~vp~~~~  533 (574)
                        ..++...+.+.+++.+++..+ ++.+||...
T Consensus       191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       191 VSCANLKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence              123445556666555554444 467777654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.33  E-value=8.2e-06  Score=98.70  Aligned_cols=151  Identities=13%  Similarity=0.017  Sum_probs=103.2

Q ss_pred             hhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhccc-C----c--
Q 008185          136 ALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFP-V----A--  207 (574)
Q Consensus       136 ~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~-~----~--  207 (574)
                      ..+.++++.+|.++.+.+++.+.+.++.++ +++.|.++|+.    .+++ .+..+.++..++.+.+++.. .    .  
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~----~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  321 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR----ITLL-YVPIGALLMGLFGLDLAFASSSVPAEPAQ  321 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc----eeee-eehHHHHHHHHHHHHHHhccccccccccc
Confidence            355678888999999999999999888776 66789999863    1233 23323333333222222210 0    0  


Q ss_pred             ---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc-cCChh
Q 008185          208 ---------AKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL-KTPPT  277 (574)
Q Consensus       208 ---------~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~-~~gwr  277 (574)
                               ....+.+++..++.+++.+...+...+++.+..++++||+++|+.++...+|..+|++++|.+.. ..++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~  401 (1140)
T PRK06814        322 LKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIP  401 (1140)
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence                     01123345555666777777777778899999999999999999999999999999999998863 45778


Q ss_pred             HHHHHHHHHHHHHH
Q 008185          278 TMFLVFAVLLSLQL  291 (574)
Q Consensus       278 ~~f~i~ai~~~~~~  291 (574)
                      +.|++.+++.++..
T Consensus       402 ~~~~~~~~~~~~~~  415 (1140)
T PRK06814        402 WIILFIALANLIVA  415 (1140)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87776665544433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.33  E-value=0.00014  Score=76.45  Aligned_cols=309  Identities=16%  Similarity=0.107  Sum_probs=152.9

Q ss_pred             hhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008185          159 GNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVA  237 (574)
Q Consensus       159 ~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~  237 (574)
                      -.+|.. .+.++-+..+|+|   |+.|.+.  ...+..+++++.++.++    .+.-+++-.+.+++.+..++...++..
T Consensus        68 di~P~l~~Kl~aP~fi~~v~---y~~Ri~~--~~~l~~~g~l~va~~~~----v~~~l~Gv~las~ssg~GE~tfL~lt~  138 (402)
T PF02487_consen   68 DILPSLLVKLIAPFFIHRVP---YWIRILI--CVALSAAGMLLVAFSPS----VWVRLLGVVLASLSSGLGEVTFLSLTH  138 (402)
T ss_pred             HHHHHHHHHHHhHhhhhhcc---chHHHHH--HHHHHHHHHhheeeccc----hhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            344543 3555555677763   5555444  44566677776666532    333455566677777777776666544


Q ss_pred             hhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc-cCChhHHHHHHHHHHHHHHHHhh-hcccccc--cccccchhcc-
Q 008185          238 EYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL-KTPPTTMFLVFAVLLSLQLAISF-SAREESL--GLAQVSYQNV-  312 (574)
Q Consensus       238 d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~-~~gwr~~f~i~ai~~~~~~~~~~-~lpEt~~--~~~~~~~~~~-  312 (574)
                       ..++    ...+.+..+...++++|+..--.+.. ..+.|..+.+...++++..+..+ .+|.++.  +..+.+.++. 
T Consensus       139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~  213 (402)
T PF02487_consen  139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEA  213 (402)
T ss_pred             -hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcc
Confidence             3222    23455666666788888877655555 24457788887777766655544 3443221  1111000000 


Q ss_pred             -----hhh--------hhhhhHHHHHHHHHHHHcchhhHHHHHHHHh-HhhhcccccccceeehccccCCCchhHHHHHH
Q 008185          313 -----ASK--------SIAQSIKKQFSDLIATIGEESISYPLTWLVA-SVAMVPVLSGSMFCYQTQCLNINPSVIGMSRV  378 (574)
Q Consensus       313 -----~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i  378 (574)
                           +.+        ......++.++..+.++.   ...++....+ -|.+.+......  .+.....-...++-+..+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~---ymiPL~lVY~aEY~InqGv~~tl--~fp~~~~~~r~~Y~~Y~~  288 (402)
T PF02487_consen  214 EDDLLESETSESKPDSSSKLSFKEKLKRLKPLLW---YMIPLFLVYFAEYFINQGVAPTL--LFPNSFFSPRDQYRWYQL  288 (402)
T ss_pred             cccccccccccccccccchhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhchHHHh--cCCccCCCHHHHHHHHHH
Confidence                 000        001112222222222221   2222221111 233333332222  122222222456667777


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHH
Q 008185          379 IGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSML  458 (574)
Q Consensus       379 ~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l  458 (574)
                      ...+|.+++--... +   +..|++.+.+ ++..+-.++ +.+ ..+.  ..+++.|.++......+.+++...+-....
T Consensus       289 ~YQ~GVFISRSS~~-~---~rir~lwils-~LQ~~nl~~-~~l-~s~~--~fipsi~ivf~lif~eGLlGGa~YVNtF~~  359 (402)
T PF02487_consen  289 LYQLGVFISRSSLP-F---FRIRRLWILS-LLQVINLVF-LLL-QSWY--RFIPSIWIVFVLIFYEGLLGGASYVNTFYR  359 (402)
T ss_pred             HHHHHHhhhhccee-e---eehhhHHHHH-HHHHHHHHH-HHH-HHHH--HHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            78888777633221 1   1224443333 222221111 111 1111  013444433333333444555666655666


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          459 LARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       459 ~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      +.+..|+++|.-.+|.......+|..++..++-.+-.
T Consensus       360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            7778889999999999888888888887777655443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00896 CynX cyanate transporter

Probab=98.33  E-value=6.5e-06  Score=85.90  Aligned_cols=129  Identities=18%  Similarity=0.101  Sum_probs=86.4

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      .+.++++ .|.+..+.+...++..++..+ .++.|+++||+   + +||..+.++..+..++...+.+..+..  .   .
T Consensus       220 lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~  289 (355)
T TIGR00896       220 LPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRV---K-DQRGIVAVLAVLQLVGLCGLLFAPMHG--L---W  289 (355)
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh---c-cchHHHHHHHHHHHHHHHHHHHhhhhH--H---H
Confidence            4446665 799999999999888877665 78899999985   2 455555556555566655555443321  1   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc-ccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQ-KNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP  275 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~-~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g  275 (574)
                      ....+.+++.+...+...+.+.+..+ +++++..+++.+....+|..+||.++|++.+..|
T Consensus       290 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       290 AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22334455555544444455555544 4566888888888888899999999999988765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.32  E-value=1.6e-05  Score=87.28  Aligned_cols=162  Identities=12%  Similarity=0.088  Sum_probs=103.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCc-ceEEeehhHHHH
Q 008185          367 NINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPN-EVFVLCFAGLAE  445 (574)
Q Consensus       367 g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~-~~~~l~~~~l~~  445 (574)
                      ..+..+.++......++.+++.++.+++.||+|+|+.+.++.++..+..++.. +...    . .+. .+..+...-+..
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~-~~~~----~-~~~~~~~~~~~~r~l~  125 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASG-LSPG----S-SPKSVMATLCFWRFWL  125 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-HccC----c-ccchHHHHHHHHHHHH
Confidence            34556778888888999999999999999999999998877766665543221 1110    0 000 011111112222


Q ss_pred             HHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcc----c----------CCC-CChhH
Q 008185          446 TLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGIT----F----------GDY-SSLPV  509 (574)
Q Consensus       446 ~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~----~----------~~~-~~l~~  509 (574)
                      +++ +....+..++++|.+|++.||++.++.+....+|..+++.++..+...+...    .          ... .+...
T Consensus       126 G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~  205 (502)
T TIGR00887       126 GVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRI  205 (502)
T ss_pred             HHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHH
Confidence            233 2333445688999999999999999999999999999998887766533210    0          000 12334


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHH
Q 008185          510 GIVIQFLAALLPLIWIHNVPMSETI  534 (574)
Q Consensus       510 ~~li~~~~~ll~l~~~~~vp~~~~~  534 (574)
                      .+.+.++..++.+++.+++||...-
T Consensus       206 ~~~~~~ip~~i~~~~~~~lpESpr~  230 (502)
T TIGR00887       206 LIGFGAVPALLALYFRLTIPETPRY  230 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            4455555555566666789998653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.29  E-value=1e-05  Score=88.80  Aligned_cols=158  Identities=11%  Similarity=-0.025  Sum_probs=93.5

Q ss_pred             Hcchh-hHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHH
Q 008185          332 IGEES-ISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKK-VPLRKLVGAVQI  409 (574)
Q Consensus       332 ~~~~~-v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r-~~~r~ll~~~~l  409 (574)
                      +++|+ ++..+...+......+......+.|.++.+|+++.+.+...............+.+++.|| +++|+.+..+.+
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            34553 4333333333222223333344557778899998887776555444444444678899999 599999888877


Q ss_pred             HHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHH-HHHHHHhhcCCCh--hHHHHHHHHHHHHhHHHHH
Q 008185          410 LYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLP-FSMLLARLCPQGC--EGSLTSFSASALCLSSIAS  486 (574)
Q Consensus       410 l~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p-~~~l~~~~~p~~~--~gt~~gl~~~~~~lg~~lg  486 (574)
                      +.++..++. .+..         +....+....+..+++.....| ...++.+.+|++.  ++.++++++...++|..+|
T Consensus        97 ~~~ig~~l~-~~~~---------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~g  166 (500)
T PRK09584         97 VLAIGYALV-AWSG---------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFS  166 (500)
T ss_pred             HHHHHHHHH-HHhc---------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHH
Confidence            666543322 1110         0110011111222233222223 3467888887643  4567899999999999999


Q ss_pred             HHHHHHHHHhhCc
Q 008185          487 GFLGVGLASLTGI  499 (574)
Q Consensus       487 ~~i~g~l~~~~g~  499 (574)
                      |.++|.+.+..|+
T Consensus       167 p~i~g~l~~~~g~  179 (500)
T PRK09584        167 MLATPWLAAKYGW  179 (500)
T ss_pred             HHHHHHHHHhhCH
Confidence            9999999987764

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.28  E-value=1.7e-06  Score=97.55  Aligned_cols=170  Identities=14%  Similarity=0.073  Sum_probs=110.5

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhccc------------
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQF------------  429 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~------------  429 (574)
                      ..+.++++..+.|++.....++.+++..+.+++.+|.++++.+.++.+++++..++.. +.......+            
T Consensus        59 iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a-lphf~~~~y~~~~~~~~~~~~  137 (633)
T TIGR00805        59 IERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS-LPHFLSGRYSYSTTVSSTGNL  137 (633)
T ss_pred             hhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh-ChHHhcCCccccccccccccc
Confidence            3456999999999998899999999999999999999999998888877776655432 211000000            


Q ss_pred             ----------C----------------cC--c-ceEEeehhHHHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHH
Q 008185          430 ----------G----------------VP--N-EVFVLCFAGLAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASAL  479 (574)
Q Consensus       430 ----------~----------------~~--~-~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~  479 (574)
                                .                ..  . .+..+...-+..+++.....+. .+++.|..|++.++.+.|+++...
T Consensus       138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~  217 (633)
T TIGR00805       138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA  217 (633)
T ss_pred             cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence                      0                00  0 1111222223333333333333 578899999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHhh-Cc----------ccCCCC---ChhHHHHHHHHHHHHHHHHHHhcCCCH
Q 008185          480 CLSSIASGFLGVGLASLT-GI----------TFGDYS---SLPVGIVIQFLAALLPLIWIHNVPMSE  532 (574)
Q Consensus       480 ~lg~~lg~~i~g~l~~~~-g~----------~~~~~~---~l~~~~li~~~~~ll~l~~~~~vp~~~  532 (574)
                      .+|.++|+.+++.+.+.+ ++          +..|..   ..|..+++.+++.++..+.++++|++.
T Consensus       218 ~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~l  284 (633)
T TIGR00805       218 VFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKAL  284 (633)
T ss_pred             HhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            999999999999988754 22          112222   134446666665555444456666543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.28  E-value=0.0006  Score=73.60  Aligned_cols=260  Identities=9%  Similarity=0.026  Sum_probs=127.5

Q ss_pred             HHHhcCC-----ChhHHHHHHHHhhhhhhh--hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcc--cCccc--
Q 008185          141 MAHNLSL-----HPSTLQLVQNSGNLPMVA--KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALF--PVAAK--  209 (574)
Q Consensus       141 l~~~~~~-----s~~~~~l~~s~~~l~~~~--~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~--~~~~~--  209 (574)
                      ++|.+.+     +.+++.++-+...+|.++  .|+++.+++|+    .|+|.+ -+......+.+.+.++.  +....  
T Consensus        29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~----~~~~lf-~~~~~~F~~~f~lF~~vl~p~~~~~~  103 (472)
T TIGR00769        29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL----SKEALF-YTVISPFLGFFALFAFVIYPLSDLLH  103 (472)
T ss_pred             hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHhH-HHHHHHHHHHHHHHHHHHhcchhhcC
Confidence            5666655     447888888888887644  68999999986    234333 22222222222222222  11100  


Q ss_pred             --------------h---------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHH
Q 008185          210 --------------A---------LPNLMACVLLS-NLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNL  265 (574)
Q Consensus       210 --------------~---------~~~l~~~~~l~-~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~  265 (574)
                                    .         .+...++.+.. -+|.-.......+++.|.++.+|..+..++...+.++|.++|+.
T Consensus       104 p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~  183 (472)
T TIGR00769       104 PTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGR  183 (472)
T ss_pred             CcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          0         01111222222 23333333355788999999999999999999999999999998


Q ss_pred             HHHHhhc--------cCChh----HHHHHHHHHHHHHHHHhhhc-cccccccc-ccchhcchhhhhhhhHHHHHHHHHHH
Q 008185          266 FGGYFLL--------KTPPT----TMFLVFAVLLSLQLAISFSA-REESLGLA-QVSYQNVASKSIAQSIKKQFSDLIAT  331 (574)
Q Consensus       266 igg~l~~--------~~gwr----~~f~i~ai~~~~~~~~~~~l-pEt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (574)
                      +..++.+        .-.|.    +.+.+.++...+...+...+ ++....+. ...+++.+++..+....+   .++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~e---s~k~i  260 (472)
T TIGR00769       184 TIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTME---SLKFL  260 (472)
T ss_pred             HHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHHH---HHHHH
Confidence            8888762        12342    23333332222222222222 22111110 000000000111112222   33445


Q ss_pred             HcchhhHHHHHHHHhHhhhcccccccce-eehccccCCCch----hHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Q 008185          332 IGEESISYPLTWLVASVAMVPVLSGSMF-CYQTQCLNINPS----VIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGA  406 (574)
Q Consensus       332 ~~~~~v~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~g~s~~----~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~  406 (574)
                      ++.|.++...+++.+ |.+...+.+... -...+.+ -++.    ..|-.....++.+++...+.+++.+|+|.+....+
T Consensus       261 ~~S~yL~~ia~~vi~-y~~~~nlve~~~k~~v~~~~-p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i  338 (472)
T TIGR00769       261 VSSPYILDLALLVIA-YGISINLVEVTWKSKLKAQY-PSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALI  338 (472)
T ss_pred             HhCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            777877766665554 433322221110 0001112 1222    23444444455554445555899999998866554


Q ss_pred             HHHH
Q 008185          407 VQIL  410 (574)
Q Consensus       407 ~~ll  410 (574)
                      .-++
T Consensus       339 ~Pii  342 (472)
T TIGR00769       339 TPLV  342 (472)
T ss_pred             HHHH
Confidence            4443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK09848 glucuronide transporter; Provisional

Probab=98.27  E-value=6.3e-06  Score=89.11  Aligned_cols=133  Identities=17%  Similarity=0.078  Sum_probs=88.8

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      .+++.++.+|.++...++......++.. ..|++++++||+     ++|+.+.++..+.+++...+.+.+.+  ..+.++
T Consensus       251 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-----g~~~~~~~g~~~~~i~~~~~~~~~~~--~~~~~~  323 (448)
T PRK09848        251 SLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-----GKKNTFLIGALLGTCGYLLFFWVSVW--SLPVAL  323 (448)
T ss_pred             heeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHcCch--hHHHHH
Confidence            3446677778766655554443344444 478899999985     45555556766666655555444322  233444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccc-------CccchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKN-------GIVGLQSYAFMAAASGGILGNLFGGYFLLKTPP  276 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~-------~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gw  276 (574)
                      +..++.++|.+.......++.+|..+.+       ++|..+++.+....+|..+|+.+.|.+.+..|+
T Consensus       324 ~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        324 VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5566677787777777788888887642       348888888888899999999999988765554

>TIGR01272 gluP glucose/galactose transporter

Probab=98.25  E-value=2.7e-05  Score=80.02  Aligned_cols=137  Identities=15%  Similarity=0.003  Sum_probs=88.9

Q ss_pred             HHHHH--hcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHH
Q 008185          139 FHMAH--NLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLM  215 (574)
Q Consensus       139 ~~l~~--~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~  215 (574)
                      .|+++  .+|+++.+.++..+.+..++.+ ..+.++++||+   |  +++++.++..+..+...+....+ .   .. ..
T Consensus       165 ~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~---g--~~~~l~~~~~l~~~~~~l~~~~~-~---~~-~~  234 (310)
T TIGR01272       165 NFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI---S--QGRYLAFNAFLAVLLSIGAALTH-G---YV-AM  234 (310)
T ss_pred             HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---C--HHHHHHHHHHHHHHHHHHHHHcC-C---HH-HH
Confidence            36664  3799999999999998888877 55789999996   3  33345555555555444333332 2   11 12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 008185          216 ACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLL  287 (574)
Q Consensus       216 ~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~  287 (574)
                      ...++.+++.+...+...+...+..++ +.+.+.++. ....+|..++|.+.|.+.+..|.+..|++..+..
T Consensus       235 ~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~  304 (310)
T TIGR01272       235 WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY  304 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            333345666666665555555555443 234455554 4566899999999999999899999998654433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.25  E-value=2.8e-05  Score=82.73  Aligned_cols=161  Identities=17%  Similarity=0.207  Sum_probs=103.0

Q ss_pred             chhhhhHHHHHHhcC-CChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccc
Q 008185          132 FPWLALNFHMAHNLS-LHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAK  209 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~-~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~  209 (574)
                      ..+.....|+++ .| .+....+...++..+.=+. -.+.+++..|+     +-+..+.++.+..++=+.+.+...++. 
T Consensus       225 ~~~~f~~~yl~~-~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-----g~~~ll~~a~~~~~vR~~l~a~~~~~~-  297 (400)
T PF03825_consen  225 AYYTFFSIYLQE-LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-----GIKWLLLLALVAYAVRWLLYAYFSDPW-  297 (400)
T ss_pred             HHHHHHHHHHHH-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHHhcCCc-
Confidence            444445557776 56 6777777766665543222 12335555553     455667777777777788777774432 


Q ss_pred             hHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHH-HHHHHHHHHHHHHhhccCChhH------
Q 008185          210 ALPNLMAC----VLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAA-ASGGILGNLFGGYFLLKTPPTT------  278 (574)
Q Consensus       210 ~~~~l~~~----~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~-~~G~~igp~igg~l~~~~gwr~------  278 (574)
                        +...+.    -++.++..+........++.+..|++.|+++|+++.+.. .+|.++|..++|++.+.+|-+.      
T Consensus       298 --~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~  375 (400)
T PF03825_consen  298 --PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA  375 (400)
T ss_pred             --HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence              222222    234677777766677778888899999999999887754 5999999999999999877554      


Q ss_pred             HHHHHHHHHHHHHHH-hhhccccc
Q 008185          279 MFLVFAVLLSLQLAI-SFSAREES  301 (574)
Q Consensus       279 ~f~i~ai~~~~~~~~-~~~lpEt~  301 (574)
                      .+.+.+.+.++..++ .++.||++
T Consensus       376 ~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  376 VFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCC
Confidence            344444444444433 24566653

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.19  E-value=3e-06  Score=86.41  Aligned_cols=116  Identities=15%  Similarity=0.069  Sum_probs=84.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHH
Q 008185          369 NPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLA  448 (574)
Q Consensus       369 s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~  448 (574)
                      +....|.+....+++-++..+.++.+.|++|||..+.+|++..++.+++ +.+.          +.+..++..=+..++.
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll-~~~S----------~~F~afv~aR~l~Gi~  134 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLL-WALS----------RNFAAFVLARFLGGIF  134 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHH-HHHH----------HHHHHHHHHHHhhhhc
Confidence            3445677777778888899999999999999999988887666554432 2221          1110111111122222


Q ss_pred             HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          449 QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       449 ~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      .....+..++++|+.+++.|+.+++..+....+|..+||.+||.+..
T Consensus       135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            34556677899999999999999999999999999999999999988

>TIGR00901 2A0125 AmpG-related permease

Probab=98.15  E-value=3.2e-05  Score=80.67  Aligned_cols=126  Identities=16%  Similarity=0.096  Sum_probs=78.0

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC-----CchhHH-HHHHHHHHHHHhHHHHhhhhhhcccCcCcceEE
Q 008185          364 QCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKV-----PLRKLV-GAVQILYASSLLLDLILVRQINLQFGVPNEVFV  437 (574)
Q Consensus       364 ~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~-----~~r~ll-~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~  437 (574)
                      +..|+|..+.|+..... +...+ .++.+.+.||+     |+||.+ ..+.++.+++.+.. .+...      ....++.
T Consensus        16 ~~~g~s~~~~g~~~~~~-~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l-~~~~~------~~~l~~l   86 (356)
T TIGR00901        16 RSKNVSLKTIGFFSLVG-LPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL-SFLVP------STDLPLL   86 (356)
T ss_pred             HHcCCCHHHHHHHHHHH-HHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH-HcCCc------chhHHHH
Confidence            45799999999985442 22222 45666666665     787764 44444444332221 11110      0111111


Q ss_pred             eehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          438 LCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       438 l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      .....+..........+..+++.|..|+++|+.+.|+.....++|..+++.+++.+.+..|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g  147 (356)
T TIGR00901        87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF  147 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            1111222222334445567788999999999999999999999999999999999888776

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.14  E-value=9.4e-05  Score=73.02  Aligned_cols=156  Identities=15%  Similarity=0.112  Sum_probs=101.3

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhhhhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCcc---chHHHH
Q 008185          138 NFHMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAA---KALPNL  214 (574)
Q Consensus       138 ~~~l~~~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~---~~~~~l  214 (574)
                      .+.+++.+|.|.++...+.....++..++.+.|.+.|++     +-+..+.+|.+..++.+.......+..   ...+.+
T Consensus        25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~-----gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~   99 (250)
T PF06813_consen   25 SPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRF-----GPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM   99 (250)
T ss_pred             hHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence            346788999999999999888888877899999999984     566677788888888877776654332   124555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH-
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI-  293 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~-  293 (574)
                      .+..++++.|.+..+...-......+| ++||.+.++.-....+++.+-..+-..+.+. +-...+.+.++...++.++ 
T Consensus       100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~~v~l~~  177 (250)
T PF06813_consen  100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPAVVCLVA  177 (250)
T ss_pred             HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHH
Confidence            555666666666655544333445565 6899999987776666555444444333333 3333444445555444443 


Q ss_pred             hhhcccc
Q 008185          294 SFSAREE  300 (574)
Q Consensus       294 ~~~lpEt  300 (574)
                      .+++++.
T Consensus       178 ~~~vr~~  184 (250)
T PF06813_consen  178 MFFVRPV  184 (250)
T ss_pred             hhheecc
Confidence            4555543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.13  E-value=6e-06  Score=88.66  Aligned_cols=149  Identities=15%  Similarity=0.101  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH
Q 008185          376 SRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF  455 (574)
Q Consensus       376 ~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~  455 (574)
                      ......+|.++|.++.+.+++|+|||..+.++.++..+..++...... .      +..-..+..-.+.+...++.....
T Consensus        65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~-~------~~~e~li~GR~i~Gl~~gl~~~~~  137 (485)
T KOG0569|consen   65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS-A------PSFEMLILGRLIVGLACGLSTGLV  137 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-h------hhHHHHHHHHHHHHHHhHHHHHHH
Confidence            445567788888888899999999998887777666555443322111 0      001111111222221223333334


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 008185          456 SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETII  535 (574)
Q Consensus       456 ~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp~~~~~~  535 (574)
                      .++++|+.|.+.||..-.+......+|..++..++.  -+.+|-.    ......+.+..+.+++.++.+.++||..+.-
T Consensus       138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l--~~ilGt~----~~W~~l~~~~~i~~~~~l~~l~~~PESPk~L  211 (485)
T KOG0569|consen  138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL--PSLLGTE----DLWPYLLAFPLIPALLQLALLPFLPESPKYL  211 (485)
T ss_pred             HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc--HHhcCCC----cchHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence            477899999999999888777777777776655542  2345522    2223445556666677777889999987755


Q ss_pred             HH
Q 008185          536 EK  537 (574)
Q Consensus       536 ~~  537 (574)
                      ..
T Consensus       212 l~  213 (485)
T KOG0569|consen  212 LI  213 (485)
T ss_pred             HH
Confidence            43

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=0.00069  Score=72.36  Aligned_cols=303  Identities=13%  Similarity=0.020  Sum_probs=148.4

Q ss_pred             hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 008185          166 KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGI  245 (574)
Q Consensus       166 ~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~r  245 (574)
                      ..+.+++.|.+     +-|..+++++.. ..++.+..+..+    -+.+++.-.+.|+|.++-....+.++.+..+++..
T Consensus        67 ~l~~psiv~~i-----~~K~~lv~ga~~-y~~f~~gfl~~N----~y~~yfssallG~Gaallw~GqG~ylt~~st~~ti  136 (461)
T KOG3098|consen   67 CLFAPSIVNFL-----GPKWALVIGATC-YAAFPLGFLFPN----SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETI  136 (461)
T ss_pred             HHhhHHHHHHh-----hHHHHHHHHhHH-HHHHHHHHHhcc----hHHHHHHHHHhhhhHHheecccceehhhcCChhhH
Confidence            44556777864     456666666554 334443333333    13345666677888887777778888898888888


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhcc--------CChh-H----------HHHHHHHHHHHHHHH---hhhccccccc
Q 008185          246 VGLQSYAFMAAASGGILGNLFGGYFLLK--------TPPT-T----------MFLVFAVLLSLQLAI---SFSAREESLG  303 (574)
Q Consensus       246 g~~~s~~~~~~~~G~~igp~igg~l~~~--------~gwr-~----------~f~i~ai~~~~~~~~---~~~lpEt~~~  303 (574)
                      .+..++.|+....+.++|.++-..+...        .+-+ +          +..+.+++.....+.   ..+.|.+...
T Consensus       137 e~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~  216 (461)
T KOG3098|consen  137 ERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVV  216 (461)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchh
Confidence            8888998888888888776665443321        1111 1          111111111111111   1123332211


Q ss_pred             ccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccce--eehccccCCCc-hhHHHHHHHH
Q 008185          304 LAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMF--CYQTQCLNINP-SVIGMSRVIG  380 (574)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~g~s~-~~~gl~~i~~  380 (574)
                      ... +      .+ .+...+.++...+++++|+.+......+......-.+...+|  +.++...+.+. ...++..+..
T Consensus       217 ~~~-~------~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~  288 (461)
T KOG3098|consen  217 NCK-S------SS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGI  288 (461)
T ss_pred             hhh-h------hc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHH
Confidence            110 0      11 134556666666777888776655444332111111111121  12232344333 3345556777


Q ss_pred             HHHHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCc--------ceEEeehhHHHHHHHH
Q 008185          381 QSMLLSLTVFYDRYWK---KVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPN--------EVFVLCFAGLAETLAQ  449 (574)
Q Consensus       381 ~ig~lig~~l~~~l~~---r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~--------~~~~l~~~~l~~~~~~  449 (574)
                      ++|.++++.....+.|   ++++++++.++.++..+..++ ..+.......+...+        .........+..+++.
T Consensus       289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~l-i~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D  367 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLL-IHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGD  367 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHH-HhccccccCCCCCCcccccccccchhHHHHHHHHHhhHH
Confidence            7888887776666554   466777766665554443332 112111100010000        1111111112222222


Q ss_pred             -hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHH
Q 008185          450 -FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGF  488 (574)
Q Consensus       450 -~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~  488 (574)
                       ..-.-..+.++... ++.+..+++++-.-+.++.+++-+
T Consensus       368 ~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f  406 (461)
T KOG3098|consen  368 ACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFF  406 (461)
T ss_pred             HHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhh
Confidence             11122234566666 567777777777766666655433

>PRK10133 L-fucose transporter; Provisional

Probab=98.10  E-value=2.8e-05  Score=83.88  Aligned_cols=125  Identities=11%  Similarity=0.020  Sum_probs=87.6

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      .++.+|.++.+.|+......++..++....+++.+|+++|+++..+.+++++..++......       .++ +..+...
T Consensus        52 i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-------a~~-~~~ll~~  123 (438)
T PRK10133         52 FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------IMN-YTLFLVG  123 (438)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-------cCC-HHHHHHH
Confidence            46789999999999999999999999999999999999999999888777766543211110       011 1112222


Q ss_pred             HHHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008185          442 GLAETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLA  494 (574)
Q Consensus       442 ~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~  494 (574)
                      .+..+++ +........++.+..|++.++...++.+....+|..+++.+++.+.
T Consensus       124 r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2223333 2333334556667666666666799999999999999999987665

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=9.2e-06  Score=83.37  Aligned_cols=158  Identities=15%  Similarity=0.119  Sum_probs=104.1

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccch
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKA  210 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~  210 (574)
                      +..+.++.++.|.+..+..+.|+..--..+++++ .+++|.++||+   +-.|......+.+....+....-+. +   .
T Consensus       288 fLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~---~~~~wl~~~~gl~~~G~~~~~iP~~-~---~  360 (464)
T KOG3764|consen  288 FLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY---PHLRWLLSLGGLATVGVSSGPIPFA-T---S  360 (464)
T ss_pred             HhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc---CchhHHHHHHHHHHHHHHhchhHhh-h---h
Confidence            5666666688888886666888877667778888 78999999985   2234322222222222111111111 1   2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhccc---CccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH
Q 008185          211 LPNLMACVLLSNLGASITEVAK---DALVAEYGQKN---GIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFA  284 (574)
Q Consensus       211 ~~~l~~~~~l~~~g~~~~~~~~---~a~i~d~~~~~---~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~a  284 (574)
                      +.++++-++..+++.+..|...   -++..|.-..+   --|...++...+..+|..+||.+||.+.+..|.+|.-.+.+
T Consensus       361 ~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig  440 (464)
T KOG3764|consen  361 IAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIG  440 (464)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHH
Confidence            4555665555555655555433   34445543333   56788888899999999999999999999999999999988


Q ss_pred             HHHHHHHHHhhh
Q 008185          285 VLLSLQLAISFS  296 (574)
Q Consensus       285 i~~~~~~~~~~~  296 (574)
                      +..++-..+.+.
T Consensus       441 ~~n~iyapvl~l  452 (464)
T KOG3764|consen  441 ILNLIYAPVLLL  452 (464)
T ss_pred             HHHHHHHHHHHH
Confidence            888776655433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.06  E-value=8.5e-07  Score=92.60  Aligned_cols=125  Identities=13%  Similarity=0.150  Sum_probs=94.1

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      ++.+|.++...|++.....+..++..++++++.+|++++.++.++..+..++.+..- +.          +.++.+...=
T Consensus        60 ~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~-fs----------~~Fwq~~l~R  128 (493)
T KOG1330|consen   60 QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG-FS----------NHFWQVLLCR  128 (493)
T ss_pred             HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH-HH----------HHHHHHHHHH
Confidence            345899999999998888899999999999999999999999988888776554321 11          1111111122


Q ss_pred             HHHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          443 LAETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       443 l~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      .+.++|+....|. ..++++.+|.+.|++++++++.....|..+|-.++..+.+..+
T Consensus       129 ~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  129 GFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            2334455555555 6789999999999999999999999999888888777766555

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.01  E-value=4.9e-05  Score=81.71  Aligned_cols=147  Identities=17%  Similarity=0.096  Sum_probs=99.9

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhh-hhhhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPM-VAKPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~-~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +.+.++...+.. +......++.++.+|.+ ...+....+..++. ...|++++++||+     +||+.+..+..+.+++
T Consensus       230 l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-----gk~~~~~~~~~~~~~~  303 (428)
T PF13347_consen  230 LLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-----GKKKVYIIGLLLAALG  303 (428)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-----cceeehhhhHHHHHHH
Confidence            444445444444 44445566777777766 45566666666654 4478999999996     4555666677777777


Q ss_pred             HHHhhccc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------cCccchHHHHHHHHHHHHHHHHHHHHH
Q 008185          198 WGPLALFP-VAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQK-------NGIVGLQSYAFMAAASGGILGNLFGGY  269 (574)
Q Consensus       198 ~~~~~~~~-~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~-------~~rg~~~s~~~~~~~~G~~igp~igg~  269 (574)
                      ..++.+.+ ++   .+.+++..++.+++.+.......++++|..+.       ++.|..+|......-+|..+++.+.|.
T Consensus       304 ~~~~~~~~~~~---~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~  380 (428)
T PF13347_consen  304 FLLLFFLGPGS---PWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL  380 (428)
T ss_pred             HHHHHHHHhhh---HHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            77776665 22   45556667777888777777777888888753       334777788888888999999999988


Q ss_pred             hhccCC
Q 008185          270 FLLKTP  275 (574)
Q Consensus       270 l~~~~g  275 (574)
                      +.+..|
T Consensus       381 ~l~~~G  386 (428)
T PF13347_consen  381 LLALVG  386 (428)
T ss_pred             HHHHhC
Confidence            876443

>PTZ00207 hypothetical protein; Provisional

Probab=97.99  E-value=0.00014  Score=80.59  Aligned_cols=125  Identities=12%  Similarity=0.057  Sum_probs=75.3

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      ..+.+|++..+.+.....+.... ......+++.+|+|+|+++.++.++..+..+........ .  . .++.+ .++..
T Consensus        53 L~~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~-~--i-~~s~~-~l~l~  126 (591)
T PTZ00207         53 MQARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE-V--I-EGSVV-RLSVY  126 (591)
T ss_pred             HHHHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc-c--c-cCcHH-HHHHH
Confidence            45679999999888754432222 234457899999999999999988877766543221110 0  0 01111 11111


Q ss_pred             HHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHH-HHHHHHHH
Q 008185          442 GLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIA-SGFLGVGL  493 (574)
Q Consensus       442 ~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~l-g~~i~g~l  493 (574)
                      .+..+.++ .........+.+.+| +.||.+.|+..+...+|.++ +++..+++
T Consensus       127 r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        127 NGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12222332 223334456778886 67899999999999999975 44444444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.98  E-value=0.00013  Score=74.30  Aligned_cols=170  Identities=16%  Similarity=0.137  Sum_probs=111.5

Q ss_pred             chhHHHHHHHHHHHhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHH
Q 008185          113 NKQMLVLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGV  191 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~  191 (574)
                      -|.++..+.+..+..+.. +.|.+.  ++.| -|+|+.+.|++.++..+.-.. +.+.-.+.+|.    ..+|+..+...
T Consensus       210 aW~vtLfmGlqS~~~Y~~-~~WLP~--ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~----~n~r~~~~~~~  281 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIV-IGWLPA--ILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS----KNQRPLVVLAL  281 (395)
T ss_pred             hHHHHHHHHhhHHHHHHH-HHHHHH--HHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh----cccchHHHHHH
Confidence            566666555444433221 455553  4555 699999999988887664322 22222345542    25667776677


Q ss_pred             HHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          192 FLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQK-NGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~-~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      ..+.+.+..+++.+.+.     .+...++.++|.+.+.+....++.+.+++ ++.++..++.+....+=..+||.+.|++
T Consensus       282 ~~~l~G~~G~~~~P~~~-----~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l  356 (395)
T COG2807         282 LLMLVGLVGLLLAPGQL-----PILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL  356 (395)
T ss_pred             HHHHHHHHHHHHhhhhH-----HHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence            77777887777777542     12224666777666666677788888765 5667777777777777778899999999


Q ss_pred             hccC-ChhHHHHHHHHHHHHHHHHhh
Q 008185          271 LLKT-PPTTMFLVFAVLLSLQLAISF  295 (574)
Q Consensus       271 ~~~~-gwr~~f~i~ai~~~~~~~~~~  295 (574)
                      -+.. +|+...+..+...++..+.-+
T Consensus       357 hDa~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         357 HDATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHHHh
Confidence            8754 699998888766666555433

>PRK09669 putative symporter YagG; Provisional

Probab=97.95  E-value=0.00012  Score=79.21  Aligned_cols=120  Identities=13%  Similarity=0.046  Sum_probs=73.3

Q ss_pred             hHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHH
Q 008185          150 STLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASIT  228 (574)
Q Consensus       150 ~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~  228 (574)
                      ...+.+.....++.++ .|++++++||+     +||..+.++....+++.....+.+.+  ....+++..++.+++.+..
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----gk~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~g~~~~~~  336 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKF-----DRVRAFKWTIVAFVILSALIFFIPPS--NVWLIFALNILFNFIQNLT  336 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444 67889999985     34444444444433333222222221  1333455556677777777


Q ss_pred             HHHHHHHHHhhhcc-------cCccchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 008185          229 EVAKDALVAEYGQK-------NGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPP  276 (574)
Q Consensus       229 ~~~~~a~i~d~~~~-------~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gw  276 (574)
                      .+...++++|..+.       +..|...+.......+|..+|+.++|++.+..|+
T Consensus       337 ~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        337 TPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77778889888752       2235556777777889999999999998876555

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.95  E-value=0.00082  Score=75.75  Aligned_cols=151  Identities=13%  Similarity=0.080  Sum_probs=103.6

Q ss_pred             HHHHhcCCChhHHHHHHHHhhh-hhhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCcc----chHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNL-PMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAA----KALPNL  214 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l-~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~----~~~~~l  214 (574)
                      |+.+.+|.+.+.+..+...+.. .+.+..+.|.++|++    .+|+..+.++.++..+...+++..+...    ......
T Consensus        13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~----lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~   88 (654)
T TIGR00926        13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGW----LGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD   88 (654)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence            6667789988888777766644 445555789999985    5677777777777666666655532110    001113


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccc---CccchHHHHHHHHHHHHHHHHHHHHHhhcc-------CChhHHHHHHH
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKN---GIVGLQSYAFMAAASGGILGNLFGGYFLLK-------TPPTTMFLVFA  284 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~---~rg~~~s~~~~~~~~G~~igp~igg~l~~~-------~gwr~~f~i~a  284 (574)
                      +++..+..+|.+..-+...+..+|..+++   +|-....+++.+.++|..+++++.+++.+.       .+|...|.+.+
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~  168 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA  168 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence            34455556666666666678888887653   355667778888899999999999888643       36999999998


Q ss_pred             HHHHHHHHHh
Q 008185          285 VLLSLQLAIS  294 (574)
Q Consensus       285 i~~~~~~~~~  294 (574)
                      +..++.+++.
T Consensus       169 i~m~ia~lvf  178 (654)
T TIGR00926       169 ILMILALIVF  178 (654)
T ss_pred             HHHHHHHHHH
Confidence            8877766653

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.86  E-value=0.00067  Score=67.12  Aligned_cols=142  Identities=28%  Similarity=0.213  Sum_probs=96.0

Q ss_pred             HHhcCCCh--hHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q 008185          142 AHNLSLHP--STLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACV  218 (574)
Q Consensus       142 ~~~~~~s~--~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (574)
                      ..+++.+.  ...++..+.+.++..+ .+++|.++|+.     +||+.+..+.....+.....++...  .....+++.|
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  101 (338)
T COG0477          29 LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-----GRRKVLIIGLLLFLLGTLLLALAPN--VGLALLLILR  101 (338)
T ss_pred             HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-----cchHHHHHHHHHHHHHHHHHHhCcc--chHHHHHHHH
Confidence            33455555  4778888888887766 57899999985     3444444444332333333333333  2256677788


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcc-cCccchHHHHHH-HHHHHHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHH
Q 008185          219 LLSNLGASITEVAKDALVAEYGQK-NGIVGLQSYAFM-AAASGGILGNLFGGYFLLK--TPPTTMFLVFAVLLSLQ  290 (574)
Q Consensus       219 ~l~~~g~~~~~~~~~a~i~d~~~~-~~rg~~~s~~~~-~~~~G~~igp~igg~l~~~--~gwr~~f~i~ai~~~~~  290 (574)
                      +..+++.+...+...+++.|..++ ++|+...+.... ...+|.+++|.+++.+...  .+||+.|++........
T Consensus       102 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (338)
T COG0477         102 LLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL  177 (338)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            887788777777788899999886 567877777777 4678889999888877653  68999777766555433

>PRK11462 putative transporter; Provisional

Probab=97.74  E-value=0.00011  Score=79.72  Aligned_cols=135  Identities=12%  Similarity=0.069  Sum_probs=88.7

Q ss_pred             eeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc----CCchhHHH-HHHHHHHHHHhHHHHhhhhhhcccCcCc
Q 008185          359 FCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKK----VPLRKLVG-AVQILYASSLLLDLILVRQINLQFGVPN  433 (574)
Q Consensus       359 ~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r----~~~r~ll~-~~~ll~~~~~l~~l~l~~~~~~~~~~~~  433 (574)
                      .+|+++++|+++...|.+.+..-+.-.+.-++.+++.||    +|+||..+ ++.+..++...+ ++...    .++...
T Consensus        33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l-lf~~p----~~s~~~  107 (460)
T PRK11462         33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL-AYSTP----DLSMNG  107 (460)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH-HHhCC----CCCcch
Confidence            457789999999999999888877777777777777664    67776654 444444444322 11111    111111


Q ss_pred             -ceEEeehhHHHHHHHHhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          434 -EVFVLCFAGLAETLAQFKLLPFSMLLARLCP-QGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       434 -~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p-~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                       ..+..+...++........+|..++..|+.+ +++|++..+......++|..+++.+...+...+|
T Consensus       108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g  174 (460)
T PRK11462        108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG  174 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             1122222333334445666788889999887 6889999999998888988888888777666665

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.00022  Score=73.81  Aligned_cols=141  Identities=10%  Similarity=-0.018  Sum_probs=96.2

Q ss_pred             hhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhc
Q 008185          348 VAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINL  427 (574)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~  427 (574)
                      |+......+.+.-.+++.++.+..+.++.......|-.++....+++.||++.|+-++.+..++++...+..-...    
T Consensus        25 ~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~----  100 (422)
T COG0738          25 WGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS----  100 (422)
T ss_pred             HHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh----
Confidence            5555556666655677889999999999988888888888888899999999999998888887766543211110    


Q ss_pred             ccCcCcceEEeehhHHHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008185          428 QFGVPNEVFVLCFAGLAETLA-QFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASL  496 (574)
Q Consensus       428 ~~~~~~~~~~l~~~~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~  496 (574)
                          ...+-..+..++..+.| +..=.....++..+-+++....-..+...+..+|..++|.+++.+...
T Consensus       101 ----~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738         101 ----SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             ----hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence                01111111111111111 111111234567777888888889999999999999999999988773

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.72  E-value=9.7e-05  Score=80.54  Aligned_cols=135  Identities=13%  Similarity=0.067  Sum_probs=83.4

Q ss_pred             eeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHh----cCCchhHH-HHHHHHHHHHHhHHHHhhhhhhcccCcC-
Q 008185          359 FCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWK----KVPLRKLV-GAVQILYASSLLLDLILVRQINLQFGVP-  432 (574)
Q Consensus       359 ~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~----r~~~r~ll-~~~~ll~~~~~l~~l~l~~~~~~~~~~~-  432 (574)
                      ++|+++++|+++...|.+....-+...+.-++.+.+.|    |+|+||.. .++.+..++...+.  +.. .  ..+.. 
T Consensus        30 ~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll--f~~-p--~~~~~~  104 (473)
T PRK10429         30 MYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLL--FSA-H--LFEGTA  104 (473)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHH--HcC-C--CCCccH
Confidence            45678899999999999988888888888888888888    56885554 44555444432221  111 0  01000 


Q ss_pred             cceEEeehhHHHHHHHHhhHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          433 NEVFVLCFAGLAETLAQFKLLPFSMLLARLC-PQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       433 ~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~-p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      ..++.+....+......+..+|..++..|+. ++++|.+.++.-....++|..+.+.+...+...+|
T Consensus       105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g  171 (473)
T PRK10429        105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG  171 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            0111222222333333455678888889998 57888988888677777776666665555545455

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.71  E-value=0.00063  Score=70.90  Aligned_cols=172  Identities=16%  Similarity=0.161  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhhhccchhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHH-H
Q 008185          118 VLCGLGYWVQGFRCFPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQ-I  195 (574)
Q Consensus       118 ~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~-~  195 (574)
                      ++++-..+..|...+...+.. +-+.++|++..+..++.-...+..+. ..++|.|.||+   |  -|+.+.++.++. +
T Consensus       257 FLiA~~~~~DGv~til~~~~~-fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf---g--~k~vl~~~lvi~~~  330 (438)
T COG2270         257 FLIARFFYIDGVNTILAMGGV-FGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF---G--SKPVLMIGLVILSI  330 (438)
T ss_pred             HHHHHHHHHhhHHHHHHHHHH-HHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---C--CceeehHHHHHHHH
Confidence            334444456666654444433 55667999999988776655554443 66789999986   4  334444444433 3


Q ss_pred             HHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008185          196 LSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP  275 (574)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g  275 (574)
                      ++..++..-.  .  .. +.++-++.+...+.......++.+++.|+++-+..+|+++...-.+..+||.+-+.+.+..|
T Consensus       331 ~~~~~~~~~~--~--~~-f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg  405 (438)
T COG2270         331 AALYLIFLEG--E--LD-FWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG  405 (438)
T ss_pred             HHHHHHHccc--c--HH-HHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence            3333222222  1  11 12332333333444444567889999999999999999999999999999999999887543


Q ss_pred             -hhHHHHHHHHHHHHHHHHhhhcccc
Q 008185          276 -PTTMFLVFAVLLSLQLAISFSAREE  300 (574)
Q Consensus       276 -wr~~f~i~ai~~~~~~~~~~~lpEt  300 (574)
                       -|.-+....++.++.+++.+++|+.
T Consensus       406 ~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         406 SSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             chhhHHHHHHHHHHhhHhhEEeecCC
Confidence             6666666555555555555667764

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.70  E-value=0.00069  Score=71.56  Aligned_cols=156  Identities=12%  Similarity=0.022  Sum_probs=105.4

Q ss_pred             hHHHHHHhcC---CChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHH
Q 008185          137 LNFHMAHNLS---LHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALP  212 (574)
Q Consensus       137 ~~~~l~~~~~---~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~  212 (574)
                      .+-|.+..++   .+....|.+.++..+.=+. -.+..++.+|+     +-|..++++..+.++=+.+.++.++    .+
T Consensus       243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-----g~k~~Lllag~i~~iRi~~~~~~~~----~~  313 (412)
T PF01306_consen  243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-----GAKNLLLLAGVIMAIRIIGSGFATN----PW  313 (412)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHT--S----HH
T ss_pred             HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-----ChHhHHHHHHHHHHHHHHHHhhhcc----hH
Confidence            3445555333   2334566666665543221 11234566765     4556677777888888888777754    45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHH-HHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 008185          213 NLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYA-FMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQL  291 (574)
Q Consensus       213 ~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~-~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~  291 (574)
                      .+.+...+.++-..+.-+..--++.+..+++..++++.+. +.+..+|.++.+.++|.+.++.|.+.+|++++.+.+...
T Consensus       314 ~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~  393 (412)
T PF01306_consen  314 VISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFT  393 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHH
Confidence            5677888988888888777778889998877766666654 466679999999999999999999999999998877777


Q ss_pred             HHh-hhccccc
Q 008185          292 AIS-FSAREES  301 (574)
Q Consensus       292 ~~~-~~lpEt~  301 (574)
                      ++. +.++.++
T Consensus       394 li~~f~l~~~~  404 (412)
T PF01306_consen  394 LISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHS--SS
T ss_pred             HHheeeecCCC
Confidence            765 5566544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.64  E-value=0.00032  Score=76.30  Aligned_cols=158  Identities=15%  Similarity=0.085  Sum_probs=99.1

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      .++.+....+++.......++-+++.+..+.+.+|++..+.+....++..+..++.....          +.+. +...-
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~----------s~~~-~ialr  141 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVH----------SFPG-LIALR  141 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHh----------hhHH-HHHHH
Confidence            355677777888887778888888888888899999977776666555554443322211          1111 11112


Q ss_pred             HHHHHHHhhHHH-HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHH-HHH
Q 008185          443 LAETLAQFKLLP-FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLA-ALL  520 (574)
Q Consensus       443 l~~~~~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~-~ll  520 (574)
                      +..++.+....| ...++...+.++++|.-+|++....++|+++|+++...+.+.-|.. ..+. ...++++.+++ ...
T Consensus       142 ~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~-~~~g-W~~~FiI~G~i~~~~  219 (495)
T KOG2533|consen  142 FLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG-GLAG-WRWLFIIEGVITLVL  219 (495)
T ss_pred             HHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC-CcCC-ceeehhHHHHHHHHH
Confidence            222333433444 4566888999999999999999999999999999888776532221 1112 22334444444 444


Q ss_pred             HHHHHHhcCCCHH
Q 008185          521 PLIWIHNVPMSET  533 (574)
Q Consensus       521 ~l~~~~~vp~~~~  533 (574)
                      +++.++++|+...
T Consensus       220 gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  220 GIVVFFFLPDNPS  232 (495)
T ss_pred             HheEEEEecCChh
Confidence            5555677886655

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.54  E-value=0.0016  Score=67.86  Aligned_cols=156  Identities=17%  Similarity=0.069  Sum_probs=111.4

Q ss_pred             hhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhh-hheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchH
Q 008185          133 PWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKP-LYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKAL  211 (574)
Q Consensus       133 ~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~p-l~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~  211 (574)
                      -..-+++|=.+.||++..+.+.+.+....+..++. +.|.+..+    +.+++....+++..+++++.+..++.... ..
T Consensus       227 QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~----~~~~~~~a~~G~~~~~~~f~lii~a~~~~-~~  301 (403)
T PF03209_consen  227 QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR----RLGKKRTAALGCLLGALAFALIILAGPLG-SP  301 (403)
T ss_pred             hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHHHHHHHHHHhcc-cc
Confidence            44456667788899999999988888877766655 35666553    23444555567777777776655543221 12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhcc----------CChhHHHH
Q 008185          212 PNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLK----------TPPTTMFL  281 (574)
Q Consensus       212 ~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~----------~gwr~~f~  281 (574)
                      +.+-...++.++|.++..+..-+.+-|+..+++.|..++.+.+...+..-+|-++||.+.+.          .++..+|.
T Consensus       302 ~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~  381 (403)
T PF03209_consen  302 WLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFA  381 (403)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence            44556677788999988888888899999888899999999999999888999999877641          34666777


Q ss_pred             HHHHHHHHHHHH
Q 008185          282 VFAVLLSLQLAI  293 (574)
Q Consensus       282 i~ai~~~~~~~~  293 (574)
                      +-++..++..++
T Consensus       382 lEa~ll~~a~~l  393 (403)
T PF03209_consen  382 LEAVLLLAALVL  393 (403)
T ss_pred             HHHHHHHHHHHH
Confidence            766555544443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.50  E-value=0.00091  Score=73.81  Aligned_cols=121  Identities=10%  Similarity=0.055  Sum_probs=82.7

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHH
Q 008185          364 QCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGL  443 (574)
Q Consensus       364 ~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l  443 (574)
                      +.++.+.....+......+|.++|..+.+.+.+|+|||+++.++.++.+++.+.. .+.         ++.......-.+
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~-a~a---------~~~~~~~~~Rfl  180 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT-AFA---------PNYWMFLIFRFL  180 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH-HHh---------CcHHHHHHHHHH
Confidence            4466667777788888899999999999999999999999999988877766432 221         121111111112


Q ss_pred             HHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          444 AETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       444 ~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      .++..........++++|+.+++.|+.+..+ ......+..+++..++.+..
T Consensus       181 ~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  181 SGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             HHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            2222222233335678899999999999999 66677777777777777666

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.49  E-value=0.0003  Score=75.10  Aligned_cols=165  Identities=13%  Similarity=0.089  Sum_probs=118.1

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +++..++.|... ++...+-.+++| .+-.+...|....+-..+-++ -++.+.+.+++     ++..++.++....++=
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-----GHv~v~~lgLa~~~~R  449 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-----GHVNVMYLGLACNVGR  449 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHh-----cccceeeehhhHHHHH
Confidence            334444555544 555656556665 676666667544444444333 45667888874     4555555566666666


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHH-HHHHHHHHHHHHHhhccCCh
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAA-ASGGILGNLFGGYFLLKTPP  276 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~-~~G~~igp~igg~l~~~~gw  276 (574)
                      ++......+    .|+.+-.-+++++..+.......+++.+..||+.|..++++..... .+|--+|.++||.+.+.+|=
T Consensus       450 f~~~S~L~n----~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~  525 (618)
T KOG3762|consen  450 FLYYSYLQN----PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGA  525 (618)
T ss_pred             HHHHHHhcC----chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehh
Confidence            666666643    4555667788888888888888899999999999999999887765 48999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q 008185          277 TTMFLVFAVLLSLQLAIS  294 (574)
Q Consensus       277 r~~f~i~ai~~~~~~~~~  294 (574)
                      |..|++.++..++.++..
T Consensus       526 ~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  526 RTTFRIFGIACLVTLALF  543 (618)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988887776653

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.44  E-value=0.15  Score=54.51  Aligned_cols=149  Identities=13%  Similarity=0.142  Sum_probs=82.6

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCC---ChhHHHHHHHHhhhhhh--hhhhheeeccccccCCCccch-
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSL---HPSTLQLVQNSGNLPMV--AKPLYGILSDALYIGGAHRIP-  185 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~---s~~~~~l~~s~~~l~~~--~~pl~G~lsD~~~~~G~rRk~-  185 (574)
                      .|.-+..+++..++.++.+ +.     --++|.+.+   +++.+.++-....+|..  +.++.+.++++.   . +++. 
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~l-----R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l---t-~~~vF   95 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLL-----RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL---T-REKVF   95 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc---C-HHHHH
Confidence            3444444555555555543 21     134665544   56778888888888753  377889999975   1 3332 


Q ss_pred             hHhHHHHHHHHHHHHhhcc--cC------c-----------c-c--------hHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 008185          186 YICIGVFLQILSWGPLALF--PV------A-----------A-K--------ALPNLMACVLLS-NLGASITEVAKDALV  236 (574)
Q Consensus       186 ~l~i~~~~~~~~~~~~~~~--~~------~-----------~-~--------~~~~l~~~~~l~-~~g~~~~~~~~~a~i  236 (574)
                      +++.+.+  ..++.+++++  +.      +           + .        +-|...+...++ ..|.-.....-.+..
T Consensus        96 ~~~~~~F--~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~fa  173 (509)
T COG3202          96 YIILGFF--LGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFA  173 (509)
T ss_pred             HHHHHHH--HHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333322  2222222221  10      0           0 0        002222223332 233333333445677


Q ss_pred             HhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008185          237 AEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL  272 (574)
Q Consensus       237 ~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~  272 (574)
                      .|+++.+|..+..++++.+.+++..++..+..++..
T Consensus       174 Neitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         174 NEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888888999999999999888888888877765

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.37  E-value=0.0018  Score=71.43  Aligned_cols=105  Identities=10%  Similarity=0.047  Sum_probs=73.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhh
Q 008185          372 VIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFK  451 (574)
Q Consensus       372 ~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  451 (574)
                      +.+++.....+|+.++..+.+++.|++|+|+.++++.+++.+..++.... .         +....+..-.+.+...+..
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-~---------~~~~l~~GR~l~G~g~G~~  159 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-P---------SWYQLIVGRILTGLGVGGA  159 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-h---------hHHHHHHHHHHhccchhhh
Confidence            45788888889999999999999999999999998888777665543211 1         1111111122222222233


Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHH
Q 008185          452 LLPFSMLLARLCPQGCEGSLTSFSASALCLSSIAS  486 (574)
Q Consensus       452 ~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg  486 (574)
                      ......+.+|++|++.||...++.+....+|..++
T Consensus       160 ~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~  194 (513)
T KOG0254|consen  160 SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG  194 (513)
T ss_pred             hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH
Confidence            34445789999999999999999888888777777

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.37  E-value=0.00044  Score=72.53  Aligned_cols=129  Identities=14%  Similarity=0.070  Sum_probs=93.0

Q ss_pred             hheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008185          168 LYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKA----LPNLMACVLLSNLGASITEVAKDALVAEYGQKN  243 (574)
Q Consensus       168 l~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~  243 (574)
                      +...++|++     +||+..+-+.+++.+.+++++...+....    .....+..+++++|-....   ....+|.+|.+
T Consensus       367 ~tv~~id~i-----GRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~tt---fivpaE~FPar  438 (538)
T KOG0252|consen  367 FTVYFIDII-----GRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATT---FIVPAEIFPAR  438 (538)
T ss_pred             EEEEEeehh-----hhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCcee---EEeehhhchHH
Confidence            457899974     68888887888888888777776541111    1112233445555533222   22247888889


Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHhhc-----cCChhHHHHHHHHHHHHHHHHhhhcccccccc
Q 008185          244 GIVGLQSYAFMAAASGGILGNLFGGYFLL-----KTPPTTMFLVFAVLLSLQLAISFSAREESLGL  304 (574)
Q Consensus       244 ~rg~~~s~~~~~~~~G~~igp~igg~l~~-----~~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~  304 (574)
                      -|+..-++..+..-+|+++|...-+++.+     ..|.|++|++.+....+..+..+++|||....
T Consensus       439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~  504 (538)
T KOG0252|consen  439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKS  504 (538)
T ss_pred             HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccC
Confidence            99999898777777999999998888888     78999999999988887777778899987543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.34  E-value=0.055  Score=58.90  Aligned_cols=42  Identities=14%  Similarity=0.045  Sum_probs=34.1

Q ss_pred             HHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008185          231 AKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL  272 (574)
Q Consensus       231 ~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~  272 (574)
                      .-.++..|.++.+|..+..++...+.++|.+++..+..++.+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677888888888888999988888888888888877766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=97.34  E-value=0.0013  Score=71.74  Aligned_cols=129  Identities=12%  Similarity=0.018  Sum_probs=88.8

Q ss_pred             HHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccC--c----cchHHHH
Q 008185          142 AHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPV--A----AKALPNL  214 (574)
Q Consensus       142 ~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~--~----~~~~~~l  214 (574)
                      .+.+|.++.+.|++.+...++..+ ..+.+.+.+|+     +.|..+.++.++.+++.........  +    ......+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-----~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-----PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            346899999999988887766554 55667776653     3455566666665555433221110  0    0001112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 008185          215 MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP  275 (574)
Q Consensus       215 ~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g  275 (574)
                      +..-++.+++.++...+...++.+..|++++|..+++.....++|..+|+.+||++.+..|
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3334556667777777778889999999999999999999999999999999999988766

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.017  Score=56.73  Aligned_cols=307  Identities=15%  Similarity=0.109  Sum_probs=145.6

Q ss_pred             hcCCChhHHHHHHHHhhh-hhhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHH
Q 008185          144 NLSLHPSTLQLVQNSGNL-PMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSN  222 (574)
Q Consensus       144 ~~~~s~~~~~l~~s~~~l-~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~  222 (574)
                      .++....+++-+.-.... .+.++-+.|-+.|+.     +||.--+..+    +...+.+..-+++ .+..+++.|.+++
T Consensus        66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-----GRKracvtyc----itYiLsCiTKhSp-qYkVLmVGR~LGG  135 (454)
T KOG4332|consen   66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRACVTYC----ITYILSCITKHSP-QYKVLMVGRVLGG  135 (454)
T ss_pred             hcCccCCccceeeecccchHHHHHHHHHHHHhhh-----ccccceeeeh----HHHHHHHHhhcCC-ceEEEeehhhhhh
Confidence            356666666643322222 235578889999974     3443222222    2333333333332 2455789999998


Q ss_pred             HHHHHHHHHHHHH-HHhhhcccCccchHHHHH--------HHHHHHHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHH
Q 008185          223 LGASITEVAKDAL-VAEYGQKNGIVGLQSYAF--------MAAASGGILGNLFGGYFLLK--TPPTTMFLVFAVLLSLQL  291 (574)
Q Consensus       223 ~g~~~~~~~~~a~-i~d~~~~~~rg~~~s~~~--------~~~~~G~~igp~igg~l~~~--~gwr~~f~i~ai~~~~~~  291 (574)
                      +..+....+..+. ++|--  ++|+.-+-+..        .+..+-.+++.+.|..+++.  +|.-..|-..+.+..+..
T Consensus       136 iaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigm  213 (454)
T KOG4332|consen  136 IATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGM  213 (454)
T ss_pred             HHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            8887765444433 34432  33443332111        12224445555555555553  466677765544444444


Q ss_pred             HHhh-hcccccccccccchhcchhhhhhhhHHHHHHH-HHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCC
Q 008185          292 AISF-SAREESLGLAQVSYQNVASKSIAQSIKKQFSD-LIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNIN  369 (574)
Q Consensus       292 ~~~~-~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s  369 (574)
                      .+.+ -..|.+..+.+           .+....+.+. ...+..|.++.+.-.+..+.-..++    .+.+..+-.+.-+
T Consensus       214 Avil~~W~ENygdps~-----------~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smy----tFVFLWTPaLspn  278 (454)
T KOG4332|consen  214 AVILSSWSENYGDPSE-----------NKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMY----TFVFLWTPALSPN  278 (454)
T ss_pred             HHHHhhhhhccCChhh-----------hHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhh----eeeeeecccCCCC
Confidence            3333 34555543221           1111222221 2223456665544433333111111    1111112222211


Q ss_pred             ch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHH
Q 008185          370 PS--VIGMSRVIGQSMLLSLTVFYDRYWKKVPLR--KLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAE  445 (574)
Q Consensus       370 ~~--~~gl~~i~~~ig~lig~~l~~~l~~r~~~r--~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~  445 (574)
                      +.  -.|.++.-..+++++|.-++.|+..|...+  ....+..++..+..++.. +.......-+.+.  ..+...++++
T Consensus       279 ~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpi-lt~~vsP~kes~~--~s~i~F~~~E  355 (454)
T KOG4332|consen  279 DEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPI-LTSSVSPSKESPS--ESLIGFCLFE  355 (454)
T ss_pred             cccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH-HHhccCCCcCCch--HHHHHHHHHH
Confidence            22  247778888889999999998888765443  233333333333322222 1111111111111  1123334444


Q ss_pred             HHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 008185          446 TLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALC  480 (574)
Q Consensus       446 ~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~  480 (574)
                      .+.+..+..++-+-.+..|++.|++.+-++..-.+
T Consensus       356 ~cvGlfwPSimkmRsqyIPEearstimNfFRvPLn  390 (454)
T KOG4332|consen  356 ACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLN  390 (454)
T ss_pred             HHHhhcchHHHHHHHhhCCHHHHhhhhhheechhh
Confidence            44444444445566788999999887766554333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.26  E-value=0.002  Score=69.02  Aligned_cols=136  Identities=14%  Similarity=0.105  Sum_probs=89.3

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccch
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKA  210 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~  210 (574)
                      +......+|.+..+|-+..+..+.......+..+ .+++.++++++     ++|..+.++.++.+++..++.+.+.+  +
T Consensus       254 i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-----gkk~~~~~~~~~~~i~~~~~~f~~~~--~  326 (467)
T COG2211         254 IRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-----GKKKLFLIGLLLLAVGYLLLYFTPAG--S  326 (467)
T ss_pred             HHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHhhcCc--c
Confidence            3444444555555666666665555555555555 56788899985     45555666777777777777777633  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------cCccchHHHHHHHHHHHHHHHHHHHHHhhccC
Q 008185          211 LPNLMACVLLSNLGASITEVAKDALVAEYGQK-------NGIVGLQSYAFMAAASGGILGNLFGGYFLLKT  274 (574)
Q Consensus       211 ~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~-------~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~  274 (574)
                      ...++++.++.++|.+.......++++|..+-       +.-|...+......=+|..+|..+.|++....
T Consensus       327 ~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         327 VVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             hHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44556667888899998888888888887642       22255555555555588888888888776543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.19  E-value=6e-06  Score=89.14  Aligned_cols=150  Identities=11%  Similarity=0.041  Sum_probs=88.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHH-H
Q 008185          371 SVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLA-Q  449 (574)
Q Consensus       371 ~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~  449 (574)
                      ...++......+|.++|..+.+.+.||+|||+.+.++.++..+..++.. +....      .+.+.....-.+ .+++ +
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~-~~~~~------~~~~~~~~~R~~-~G~~~g  117 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIA-FAPSY------NNFWMLLIGRFL-IGFGIG  117 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccc-ccccc------cccccccccccc-cccccc
Confidence            4567778888899999999999999999999998888776655443221 11100      011111111111 2222 2


Q ss_pred             hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcC
Q 008185          450 FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVP  529 (574)
Q Consensus       450 ~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp  529 (574)
                      .......+++.|.+|++.||...++.+....+|..++..++-.+....+     .........+.++..++.++...++|
T Consensus       118 ~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~~Wr~~~~~~~~~~l~~~~~~~~~p  192 (451)
T PF00083_consen  118 GAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD-----NWGWRILLIFGAIPSLLVLLLRFFLP  192 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence            3333445778999999999999888888777777766655433311111     00112223344444444444557788


Q ss_pred             CCHH
Q 008185          530 MSET  533 (574)
Q Consensus       530 ~~~~  533 (574)
                      |...
T Consensus       193 ESP~  196 (451)
T PF00083_consen  193 ESPR  196 (451)
T ss_pred             cccc
Confidence            7744

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.94  E-value=0.0053  Score=60.69  Aligned_cols=121  Identities=12%  Similarity=0.048  Sum_probs=76.7

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcC-cceEEeeh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVP-NEVFVLCF  440 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~-~~~~~l~~  440 (574)
                      .++.+|+|..+...+.....+|..+| +..+.+.|+++.+..+.++.+...+.+........+.     ++ ...+.++.
T Consensus        28 Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~-----i~~~~~~~~~~  101 (250)
T PF06813_consen   28 LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR-----IPSLPVWLMCL  101 (250)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc-----cCccchHHHHH
Confidence            35679999999999988888888775 6678889999999888888887777766543332211     11 11111221


Q ss_pred             hHHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHH
Q 008185          441 AGLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFL  489 (574)
Q Consensus       441 ~~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i  489 (574)
                      .....+.+. ...........+.+| +.||++.|+.-+...+++++-..+
T Consensus       102 ~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i  150 (250)
T PF06813_consen  102 FLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQI  150 (250)
T ss_pred             HHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHH
Confidence            111111111 111222334557787 479999999998888887654443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.92  E-value=0.012  Score=59.81  Aligned_cols=165  Identities=13%  Similarity=0.132  Sum_probs=87.7

Q ss_pred             eccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHH
Q 008185          172 LSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSY  251 (574)
Q Consensus       172 lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~  251 (574)
                      +.|..     |-||.+++-.+..+.+|.++-+..+    .+.+=+.=+.-|. .+.++++..+++-...+|+++.++.+.
T Consensus        65 LTD~l-----rYKPvivlq~ls~v~~w~~lv~g~s----V~~mQvlE~FyG~-~tAaEIAYysYIYs~Vd~~~Yqrvt~y  134 (433)
T KOG3810|consen   65 LTDYL-----RYKPVVVLQALSGVPVWIMLVFGPS----VKAMQVLEFFYGP-ATAAEIAYYSYIYSKVDPEMYKRVTGY  134 (433)
T ss_pred             Hhhhh-----hcceeeeeeccchhHHHHHHHhcCC----chheeeehhhcCh-HHHHHHhhhheeeeecCHHHHHHHHHH
Confidence            67853     7788887766666667766555432    1222222222222 234566777777777788888788887


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHHHHhhhcccccccccc---cch---hcchh----hhhh-
Q 008185          252 AFMAAASGGILGNLFGGYFLLK--TPPTTMFLVFAVLLSLQLAISFSAREESLGLAQ---VSY---QNVAS----KSIA-  318 (574)
Q Consensus       252 ~~~~~~~G~~igp~igg~l~~~--~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~---~~~---~~~~~----~~~~-  318 (574)
                      ..++...|-..|..++-.++..  .+....=.+......+..++.+++|..++..-.   .++   ++++.    .+.. 
T Consensus       135 ~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~  214 (433)
T KOG3810|consen  135 CRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMS  214 (433)
T ss_pred             hHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCccchhhH
Confidence            7777777888887777766642  233333333322222333335566654422110   000   11110    0000 


Q ss_pred             ---hhHHHHHHHHHHHHcchhhHHHHHHHHh
Q 008185          319 ---QSIKKQFSDLIATIGEESISYPLTWLVA  346 (574)
Q Consensus       319 ---~~~~~~~~~~~~~~~~~~v~~~~l~~~l  346 (574)
                         ....+-.+++....++|.++.-.++-.+
T Consensus       215 ~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl  245 (433)
T KOG3810|consen  215 YLRGAFVLLWRDLQECYSNPRLLKWSLWWAL  245 (433)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhhhhHHHHHH
Confidence               1122223455566788888777776655

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.84  E-value=0.036  Score=57.14  Aligned_cols=125  Identities=19%  Similarity=0.162  Sum_probs=75.3

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      -+.+|+++.+++.+++.+.+.+++.+.+.+.+.||+|+|+.-+..++++.++++..    .       .++ +.++..+=
T Consensus        61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k----~-------~~~-~~~L~~GR  128 (354)
T PF05631_consen   61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK----H-------SSN-YPVLLLGR  128 (354)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH----h-------ccc-cHHHHHHH
Confidence            35699999999999999999999999999999999999988777777776665421    0       122 22222222


Q ss_pred             HHHHHHH-hhHHHH-HHHHHhh----cCCChhHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhCc
Q 008185          443 LAETLAQ-FKLLPF-SMLLARL----CPQGCEGSLTSFSASALC-LSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       443 l~~~~~~-~~~~p~-~~l~~~~----~p~~~~gt~~gl~~~~~~-lg~~lg~~i~g~l~~~~g~  499 (574)
                      +..+++. +.+... .-++.|.    .|++..+..++......| +-.+++..++-.+.+..|.
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~  192 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF  192 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC
Confidence            2223332 222222 1234444    455656677776654333 3334444555555565553

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.75  E-value=0.013  Score=63.14  Aligned_cols=132  Identities=12%  Similarity=0.089  Sum_probs=86.2

Q ss_pred             ceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCc-ce
Q 008185          358 MFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPL-RKLVGAVQILYASSLLLDLILVRQINLQFGVPN-EV  435 (574)
Q Consensus       358 ~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~-r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~-~~  435 (574)
                      .+|...-+.+-+.+..|+......+|.+++.++++.+..|.+. |+.++.+.++..++.++-+.+..       .++ .-
T Consensus        58 wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~-------~~~~~~  130 (488)
T KOG2325|consen   58 WPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAY-------VPNGVK  130 (488)
T ss_pred             chhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHh-------cccchH
Confidence            3444444578888899999888999999999999999887764 66677777777666654322221       222 22


Q ss_pred             EEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008185          436 FVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASL  496 (574)
Q Consensus       436 ~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~  496 (574)
                      +++...=+..+++..+....-.+++...-.++|-++++..+..+-+|..+||.+...+...
T Consensus       131 y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L  191 (488)
T KOG2325|consen  131 YLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL  191 (488)
T ss_pred             HHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence            2222222223333334444456777766667788888888887788888888877666553

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.58  E-value=0.028  Score=57.85  Aligned_cols=149  Identities=13%  Similarity=0.057  Sum_probs=93.5

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHH
Q 008185          364 QCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGL  443 (574)
Q Consensus       364 ~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l  443 (574)
                      ..-|.+..+..++......|++++.+.++...+++++|+.+....+...+..++.     .     ..|+.....++-.+
T Consensus       106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is-----~-----~spnf~~L~~f~~l  175 (528)
T KOG0253|consen  106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVIS-----G-----ASPNFASLCVFRAL  175 (528)
T ss_pred             hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhh-----c-----CCCCeehhhHHHHH
Confidence            3455667777888888888999999999999999999999887766655443321     1     12332222221111


Q ss_pred             HHHHHHhhHHHH-HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHH
Q 008185          444 AETLAQFKLLPF-SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPL  522 (574)
Q Consensus       444 ~~~~~~~~~~p~-~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l  522 (574)
                      . .++ +.-.|. .++..|..|...|+.-.-+. ....+|.++...+.=....++|+.       |..+... +-..+.+
T Consensus       176 ~-~~g-~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr-------~~l~~~~-~pl~~~a  244 (528)
T KOG0253|consen  176 W-GFG-VGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR-------YLLFTSS-TPLMFAA  244 (528)
T ss_pred             H-hcc-CCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHH-hHHHHHH
Confidence            1 111 111443 45677888888887766555 667788888888777777787764       3333333 3333445


Q ss_pred             HHHHhcCCCHH
Q 008185          523 IWIHNVPMSET  533 (574)
Q Consensus       523 ~~~~~vp~~~~  533 (574)
                      .+.+++||..+
T Consensus       245 ~f~~w~~ESpR  255 (528)
T KOG0253|consen  245 RFLVWVYESPR  255 (528)
T ss_pred             HHHhhcccCcc
Confidence            56778887655

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.51  E-value=0.018  Score=63.93  Aligned_cols=116  Identities=10%  Similarity=-0.036  Sum_probs=66.0

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHH
Q 008185          364 QCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGL  443 (574)
Q Consensus       364 ~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l  443 (574)
                      .+.|-+ ....++.....++..+...+.+++.|.+|||..++.+.++..+...+.   ....+       .--.+....+
T Consensus        72 ~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~---atA~~-------~~~~iag~~l  140 (599)
T PF06609_consen   72 ADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVC---ATAQN-------MNTFIAGMVL  140 (599)
T ss_pred             HhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHh---hcCCc-------HHHHHHHHHH
Confidence            446654 345566666777788888899999999999999988887776554432   11111       1011112222


Q ss_pred             HHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHH
Q 008185          444 AETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGV  491 (574)
Q Consensus       444 ~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g  491 (574)
                      .+...+...+ ....++|+.|.+.|+..+++.....-....+|+.++.
T Consensus       141 ~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~  187 (599)
T PF06609_consen  141 YGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ  187 (599)
T ss_pred             HHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH
Confidence            2221222222 2334789999999987776655433333333444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.48  E-value=0.0089  Score=63.83  Aligned_cols=144  Identities=16%  Similarity=0.036  Sum_probs=85.7

Q ss_pred             cCCCchhHHHHH----HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          366 LNINPSVIGMSR----VIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       366 ~g~s~~~~gl~~----i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      +|+++.+..-.+    ....+..++|+++.||+   .|.|+.+.++.+++++..+... ...       . .....+...
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~---LG~~~tI~lGail~~iGh~~L~-~~~-------~-~~~~gl~i~  123 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRV---LGTRRTIVLGAILMAIGHLVLA-ISS-------V-SGPGGLYIG  123 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHh-ccc-------c-ccccHHHHH
Confidence            668876543332    23334455555555554   5788888888888777655321 110       0 011111122


Q ss_pred             HHHHHHHHhhHHHH-HHHHHhhcCCC--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHH
Q 008185          442 GLAETLAQFKLLPF-SMLLARLCPQG--CEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAA  518 (574)
Q Consensus       442 ~l~~~~~~~~~~p~-~~l~~~~~p~~--~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~  518 (574)
                      +....++...+=|. ..++.|..|++  .|-..++++....|+|+.++|.+.+.+.+..|+        ...+..+++..
T Consensus       124 L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~--------~~gF~~aavGm  195 (498)
T COG3104         124 LALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGW--------HVGFGLAAVGM  195 (498)
T ss_pred             HHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCH--------HHHHHHHHHHH
Confidence            33333443333232 46677887654  356678888888899999999999999998874        34566666666


Q ss_pred             HHHHHHHHhcC
Q 008185          519 LLPLIWIHNVP  529 (574)
Q Consensus       519 ll~l~~~~~vp  529 (574)
                      .++++.+...+
T Consensus       196 ~~gl~~f~~~~  206 (498)
T COG3104         196 IIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHHHHcc
Confidence            66666655444

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.40  E-value=0.15  Score=53.49  Aligned_cols=30  Identities=10%  Similarity=-0.062  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 008185          380 GQSMLLSLTVFYDRYWKKVPLRKLVGAVQILY  411 (574)
Q Consensus       380 ~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~  411 (574)
                      ..+..++|..++.++  ++..+|.+.+..++-
T Consensus       292 fN~~d~vG~~~a~~~--~~~~~r~l~i~v~lR  321 (406)
T KOG1479|consen  292 FNVFDLIGSILAALL--TWPDPRKLTIPVLLR  321 (406)
T ss_pred             hHHHHHhhhhhhhcc--cCCCCceehHHHHHH
Confidence            567777885555443  233334444444444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.21  E-value=0.43  Score=51.40  Aligned_cols=38  Identities=11%  Similarity=-0.030  Sum_probs=24.5

Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 008185          456 SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGL  493 (574)
Q Consensus       456 ~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l  493 (574)
                      +++..+..+++++..+-.+.+....+|..+|+.++-.+
T Consensus       394 m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       394 MCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666667776666676667777777777665433

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=96.13  E-value=0.29  Score=54.52  Aligned_cols=152  Identities=20%  Similarity=0.138  Sum_probs=88.1

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhhhhhhh-hheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccC----------
Q 008185          138 NFHMAHNLSLHPSTLQLVQNSGNLPMVAKP-LYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPV----------  206 (574)
Q Consensus       138 ~~~l~~~~~~s~~~~~l~~s~~~l~~~~~p-l~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~----------  206 (574)
                      ..|+.+++|.+...+.-..+.+.......| +.+.++|.+    .+|-+.+.++.++..+...++.+...          
T Consensus        61 v~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f----~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~  136 (571)
T KOG1237|consen   61 VTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSF----LGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK  136 (571)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence            347788899888666666666655445555 579999976    35666666666554444332222110          


Q ss_pred             --------ccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhc---c-c--CccchHHHHHHHHHHHHHHHHHHHHH
Q 008185          207 --------AAKALP---NLMACVLLSNLGASITEVAKDALVAEYGQ---K-N--GIVGLQSYAFMAAASGGILGNLFGGY  269 (574)
Q Consensus       207 --------~~~~~~---~l~~~~~l~~~g~~~~~~~~~a~i~d~~~---~-~--~rg~~~s~~~~~~~~G~~igp~igg~  269 (574)
                              +...-.   .+....-+..+|.+..-+...+.-+|-.+   + +  ....-+.+++...++|..++-.+..+
T Consensus       137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy  216 (571)
T KOG1237|consen  137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY  216 (571)
T ss_pred             CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence                    100111   11111222233333322223344466655   2 2  22355667777788999998888888


Q ss_pred             hhccCChhHHHHHHHHHHHHHHHH
Q 008185          270 FLLKTPPTTMFLVFAVLLSLQLAI  293 (574)
Q Consensus       270 l~~~~gwr~~f~i~ai~~~~~~~~  293 (574)
                      +-++.||.+-|.+..+..++..++
T Consensus       217 iq~~~~w~lgf~i~~~~~~lai~i  240 (571)
T KOG1237|consen  217 IQDNVGWKLGFGIPTVLNALAILI  240 (571)
T ss_pred             hhhcccceeeccHHHHHHHHHHHH
Confidence            767899999999887776655544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.11  E-value=0.034  Score=58.68  Aligned_cols=129  Identities=16%  Similarity=-0.002  Sum_probs=79.0

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceE-Eee-
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVF-VLC-  439 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~-~l~-  439 (574)
                      ....|| +....-+..++.++..+.-++..-++.|++|.|..+.+++.+..+...+-+.....     .+++.+. .++ 
T Consensus        71 ~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p-----~v~~~f~~~l~~  144 (480)
T KOG2563|consen   71 VNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLP-----FVPPLFRRPLTH  144 (480)
T ss_pred             HHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCc-----cccccchhhhhH
Confidence            344577 55555566677777777777777889999999999988888877766554333211     1222221 111 


Q ss_pred             hhHHHHHHHHhhHHHHH-HHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008185          440 FAGLAETLAQFKLLPFS-MLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASL  496 (574)
Q Consensus       440 ~~~l~~~~~~~~~~p~~-~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~  496 (574)
                      .+......++..++-+. -+..-.+|+++|+++..+-.+...+|.++|.++..++...
T Consensus       145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            11122222332222111 2234468999999998887777788888887777666554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.05  E-value=0.19  Score=54.43  Aligned_cols=124  Identities=12%  Similarity=0.023  Sum_probs=74.9

Q ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhccc------------CcC-----
Q 008185          371 SVIGMSRVIGQSMLLSL-TVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQF------------GVP-----  432 (574)
Q Consensus       371 ~~~gl~~i~~~ig~lig-~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~------------~~~-----  432 (574)
                      +.+..+.....+.+.+. ..++.++.+|+++++++.+.........++ +.++...+...            ..+     
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~l-F~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~  121 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFAL-FAFVIYPLSDLLHPTALADKLLSLLPPGFMG  121 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHH-HHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence            45666666665555555 788999999999999876654443332222 11211101000            000     


Q ss_pred             -----cceEEeehhHHHHHHHHhhHH-HHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          433 -----NEVFVLCFAGLAETLAQFKLL-PFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       433 -----~~~~~l~~~~l~~~~~~~~~~-p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                           ..|....+....+..+.+... -.+.+++|++..++..+.++++....++|..+|+.+...+.+
T Consensus       122 ~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       122 FIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 011111222233333433332 456789999999999999999999999999998887777664

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.99  E-value=0.0012  Score=72.89  Aligned_cols=173  Identities=12%  Similarity=0.022  Sum_probs=1.1

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhh--hhh----cc--------
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVR--QIN----LQ--------  428 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~--~~~----~~--------  428 (574)
                      ...++++..+.|++....-++.++...+..++..|.++.+.+.++.+++++..++..+-..  +..    ..        
T Consensus        30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~  109 (539)
T PF03137_consen   30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI  109 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence            4568999999999999999999999988889998888778888887777766553221100  000    00        


Q ss_pred             ---cC-------------------cCcceEEeehhHHHHHHHHhhHHHH----HHHHHhhcCCChhHHHHHHHHHHHHhH
Q 008185          429 ---FG-------------------VPNEVFVLCFAGLAETLAQFKLLPF----SMLLARLCPQGCEGSLTSFSASALCLS  482 (574)
Q Consensus       429 ---~~-------------------~~~~~~~l~~~~l~~~~~~~~~~p~----~~l~~~~~p~~~~gt~~gl~~~~~~lg  482 (574)
                         .-                   ............+.+.+.++...|.    .+++-|.++++..+.+.|++.++..+|
T Consensus       110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG  189 (539)
T PF03137_consen  110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG  189 (539)
T ss_dssp             ------------------------------------------SSS-----------------------------------
T ss_pred             ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence               00                   0000001111122223333333443    367888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh-Cc----------ccCC--C-CChhHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 008185          483 SIASGFLGVGLASLT-GI----------TFGD--Y-SSLPVGIVIQFLAALLPLIWIHNVPMSETII  535 (574)
Q Consensus       483 ~~lg~~i~g~l~~~~-g~----------~~~~--~-~~l~~~~li~~~~~ll~l~~~~~vp~~~~~~  535 (574)
                      -++|=++++.+...+ ++          +..|  + ...|+.+++++.+.++..+-+++.|++-+..
T Consensus       190 Pa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  190 PALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence            888888888776543 21          1111  1 2456667777777666555566666555544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=95.85  E-value=0.026  Score=56.47  Aligned_cols=133  Identities=17%  Similarity=0.140  Sum_probs=75.7

Q ss_pred             HHHHHHhhhhh-hhhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHH
Q 008185          153 QLVQNSGNLPM-VAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVA  231 (574)
Q Consensus       153 ~l~~s~~~l~~-~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~  231 (574)
                      |.++-.-.+|. +++...-...||+|   ++.|..+  ..++.+.++.+.++..+    .++-+.+..++.++.+..++.
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfp---f~~Ri~~--~v~~sa~s~~lVafs~s----~~~sL~GV~~aSissGlGEiT  135 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFP---FGFRIAL--VVLLSALSFFLVAFSNS----VPMSLLGVVFASISSGLGEIT  135 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcc---cchHHHH--HHHHHhcceEEEEeccc----hhHHHhhhhhhhhcCCcceee
Confidence            33333334554 33555556778874   4455433  45566777776666543    344455666677777777665


Q ss_pred             HHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHHHHHHHHhh-hccc
Q 008185          232 KDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL--KTPPTTMFLVFAVLLSLQLAISF-SARE  299 (574)
Q Consensus       232 ~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~--~~gwr~~f~i~ai~~~~~~~~~~-~lpE  299 (574)
                      ..++-+.. +   + ...+-+..+...++++|..--.++.+  .++.|.+..+...++++.....| .+++
T Consensus       136 FL~lss~Y-~---~-~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  136 FLALSSRY-P---S-IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             hhhhhccC-C---C-ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence            54443332 1   1 22233444444566666665556655  46788888888888877666644 3443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.64  E-value=0.14  Score=55.34  Aligned_cols=138  Identities=14%  Similarity=0.089  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHH
Q 008185          379 IGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSML  458 (574)
Q Consensus       379 ~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l  458 (574)
                      ..++..++.+.+.+-+.||+|+|..+.+..+...+..+.. .+..          .|+.+ ...+..+.. ..+.-..++
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~-~~~~----------~~~~~-~~~l~g~~~-~~~s~~~a~  136 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCL-LFQG----------YWFFL-LLGLSGGFS-AIFSVGFAY  136 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHH-HHHH----------HHHhh-hcccccchh-hhhhhhhhh
Confidence            4466777788888999999999887766544433222211 1111          11111 000100011 111122456


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHH-HHhcCCCHHHHHH
Q 008185          459 LARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIW-IHNVPMSETIIEK  537 (574)
Q Consensus       459 ~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~-~~~vp~~~~~~~~  537 (574)
                      .++.+..+.|...+|+.+.....+..++|.+++.+....|+        ...+.++.+..++.+.+ ...+||+..+.++
T Consensus       137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~--------a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGI--------ALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc--------hHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            78888999999999999999999999999999999998663        34455566555555555 4677776554443

>PF12832 MFS_1_like: MFS_1 like family

Probab=95.61  E-value=0.021  Score=45.56  Aligned_cols=47  Identities=28%  Similarity=0.468  Sum_probs=35.2

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHh
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYIC  188 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~  188 (574)
                      .+.++++ .|+|+.++|++.++..+.-. ..|++|.++||+    .++|..+.
T Consensus        23 l~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~----~~~~~~l~   70 (77)
T PF12832_consen   23 LPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF----GKRKVILL   70 (77)
T ss_pred             hhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CccHHHHH
Confidence            3346665 89999999999998877554 488999999996    25554443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.52  E-value=0.051  Score=57.21  Aligned_cols=82  Identities=11%  Similarity=0.043  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---CccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 008185          213 NLMACVLLSNLGASITEVAKDALVAEYGQKN---GIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSL  289 (574)
Q Consensus       213 ~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~---~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~  289 (574)
                      .+.+...+.++|.+..-+....+.+|..+++   +|.....+++.+.++|..+++.+.+++-++.||.+.|++.++..++
T Consensus        35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~  114 (372)
T PF00854_consen   35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLL  114 (372)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHH
Confidence            3556666677888877777788899998764   3455667788899999999999999998899999999998877666


Q ss_pred             HHHHh
Q 008185          290 QLAIS  294 (574)
Q Consensus       290 ~~~~~  294 (574)
                      ..+..
T Consensus       115 ~~~~f  119 (372)
T PF00854_consen  115 ALIVF  119 (372)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=95.44  E-value=1.2  Score=46.13  Aligned_cols=170  Identities=17%  Similarity=0.161  Sum_probs=82.0

Q ss_pred             HHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhh--hhhhhhhhheeeccccccCCCccchhHhHHHH--
Q 008185          118 VLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGN--LPMVAKPLYGILSDALYIGGAHRIPYICIGVF--  192 (574)
Q Consensus       118 ~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~--l~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~--  192 (574)
                      +.+.++|+...+.. +-......++.+ ++-+.-....+-.+.-  ....++|+.|-..|..     -|++.+-...+  
T Consensus        30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~-L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~-----sr~Kvi~~~L~lq  103 (503)
T KOG2601|consen   30 IFLYLGYFLTTWGDRMWEFSVSLFMIL-LGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGM-----SRVKVIQTWLLLQ  103 (503)
T ss_pred             ehhhHHHHHhHhhHhHHHHHHHHHHHH-HcCceehhHHHHHHHHHhHHHhhHHHHHHHhcch-----hHHHHHHHHHhhc
Confidence            33667777777765 322233335444 4432222111111111  1245689999999964     44444322111  


Q ss_pred             ----HHHHHHHHhhcccCc--cchHHHHHHHHHHHHHHHHHHHHHHHHH--H--Hhhh----cccCccchH---HHHHHH
Q 008185          193 ----LQILSWGPLALFPVA--AKALPNLMACVLLSNLGASITEVAKDAL--V--AEYG----QKNGIVGLQ---SYAFMA  255 (574)
Q Consensus       193 ----~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~~~g~~~~~~~~~a~--i--~d~~----~~~~rg~~~---s~~~~~  255 (574)
                          ..+...+...+..+.  ..+.+.+..+..+...-+++......+-  .  .|+.    ..+.+..+.   +.....
T Consensus       104 NlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~i  183 (503)
T KOG2601|consen  104 NLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGI  183 (503)
T ss_pred             cHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhh
Confidence                122223333333331  0123445566666554444433222111  0  1110    112232222   333344


Q ss_pred             HHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHH
Q 008185          256 AASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAI  293 (574)
Q Consensus       256 ~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~  293 (574)
                      -..--++.|++.|.++...+-|..-...++...+....
T Consensus       184 Dq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vsm~~  221 (503)
T KOG2601|consen  184 DQSTNLLAPVITGLIITFVSLRASAGTFAAWALVSMWV  221 (503)
T ss_pred             hhhhhchhhhhhcccceeechhhhhhhhHHHHHHHHHH
Confidence            45677889999999998888888777777777664443

>PRK03612 spermidine synthase; Provisional

Probab=94.40  E-value=1.2  Score=49.15  Aligned_cols=166  Identities=15%  Similarity=-0.013  Sum_probs=79.9

Q ss_pred             HHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhh-hheeeccccccCCCccchhHhHH---HHHHH
Q 008185          121 GLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKP-LYGILSDALYIGGAHRIPYICIG---VFLQI  195 (574)
Q Consensus       121 ~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~p-l~G~lsD~~~~~G~rRk~~l~i~---~~~~~  195 (574)
                      .+..|..++.+ .......-.+.-.+|-+....++++++++++++++- +.|.+.++.     .| .+..+-   .++..
T Consensus        20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-----~~-~~~~~e~~i~l~~~   93 (521)
T PRK03612         20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-----AA-GFVAVELLLALLGG   93 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-----HH-HHHHHHHHHHHHHH
Confidence            33344555554 333333334555678889999999999999888754 455554321     11 121111   11111


Q ss_pred             HHHHHhhcccCccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc-c
Q 008185          196 LSWGPLALFPVAAKALPNL-MACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL-K  273 (574)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~l-~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~-~  273 (574)
                      ++..++............+ ....++.++..+...+....+..+. ..++-|...|-.+....+|.++|.++.+++.- .
T Consensus        94 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~  172 (521)
T PRK03612         94 LSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPR  172 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHh
Confidence            1111111110000001111 1111122222222222221222221 11223556677788888999999999998764 6


Q ss_pred             CChhHHHHHHHHHHHHHHHH
Q 008185          274 TPPTTMFLVFAVLLSLQLAI  293 (574)
Q Consensus       274 ~gwr~~f~i~ai~~~~~~~~  293 (574)
                      +|-..+.++.+.+.+++.++
T Consensus       173 lG~~~t~~~~a~l~~~~a~~  192 (521)
T PRK03612        173 LGLIRTAALTGSLNLLAALV  192 (521)
T ss_pred             cchHHHHHHHHHHHHHHHHH
Confidence            78666666666665554443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=94.06  E-value=0.81  Score=49.13  Aligned_cols=126  Identities=15%  Similarity=0.141  Sum_probs=73.3

Q ss_pred             CchhHHHHHHHHHH-HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhh-------hcc------cCcCcc
Q 008185          369 NPSVIGMSRVIGQS-MLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQI-------NLQ------FGVPNE  434 (574)
Q Consensus       369 s~~~~gl~~i~~~i-g~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~-------~~~------~~~~~~  434 (574)
                      .++.+..+-....+ ++++...++.++.++..+.+++.+.......+.+ .+.++...       +..      -..|..
T Consensus        59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~-LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~  137 (509)
T COG3202          59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFA-LFAFVIYPYKDILHPDPEFSRDLFADLPMF  137 (509)
T ss_pred             cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH-HHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence            35556666555555 7778888999999999998887654433322222 22222110       100      011212


Q ss_pred             --eEEee--------hhHHHHHHHHhhH-HHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          435 --VFVLC--------FAGLAETLAQFKL-LPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       435 --~~~l~--------~~~l~~~~~~~~~-~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                        ++++.        ...+.+..+.+.. .-.+.++.|++..++..+.+++++...|++..+++.+...+.+
T Consensus       138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              33321        1122222232221 1235678999999999999999999999988887777666655

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=93.78  E-value=0.99  Score=41.23  Aligned_cols=93  Identities=17%  Similarity=0.164  Sum_probs=65.3

Q ss_pred             heeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccch
Q 008185          169 YGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGL  248 (574)
Q Consensus       169 ~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~  248 (574)
                      ...+.+++     +.|..++++.+... .+.+..+.++    .+.++..-.+.++|.+........++.+..+++++++-
T Consensus        57 ~P~iv~~l-----g~K~sm~lg~~~y~-~y~~~~~~~~----~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~  126 (156)
T PF05978_consen   57 APSIVNKL-----GPKWSMILGSLGYA-IYIASFFYPN----SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRN  126 (156)
T ss_pred             HHHHHHHH-----hhHHHHHHHHHHHH-HHHHHHHhhh----HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhH
Confidence            33455654     46666776766533 2322222222    34456677788899999998888999999988889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 008185          249 QSYAFMAAASGGILGNLFGGYFL  271 (574)
Q Consensus       249 ~s~~~~~~~~G~~igp~igg~l~  271 (574)
                      .++.+.....+.++|.++.-++.
T Consensus       127 ~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  127 TGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888887765553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=93.75  E-value=1.3  Score=43.66  Aligned_cols=50  Identities=14%  Similarity=0.187  Sum_probs=27.8

Q ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHhhc-------cCChhHHHHHHHHHHHHHHHHhh
Q 008185          244 GIVGLQSYAFMAAASGGILGNLFGGYFLL-------KTPPTTMFLVFAVLLSLQLAISF  295 (574)
Q Consensus       244 ~rg~~~s~~~~~~~~G~~igp~igg~l~~-------~~gwr~~f~i~ai~~~~~~~~~~  295 (574)
                      +|+..+.....+.++|.++.-+.  ++..       ...|++++-+.+++..+.+++.+
T Consensus         3 ~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~   59 (267)
T PF07672_consen    3 KKSILSQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYI   59 (267)
T ss_pred             ccceeeeeccccchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444443334445565554332  2221       23599999998877766666543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.70  E-value=0.073  Score=59.90  Aligned_cols=174  Identities=15%  Similarity=0.065  Sum_probs=113.7

Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhh--hh------hc--ccCcC
Q 008185          363 TQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVR--QI------NL--QFGVP  432 (574)
Q Consensus       363 ~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~--~~------~~--~~~~~  432 (574)
                      .+.++++..+.|++....-+|.++....+.++..|..+.+++.++.+++++..++..+-..  ..      ..  ....+
T Consensus       124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~  203 (735)
T KOG3626|consen  124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP  203 (735)
T ss_pred             hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence            3458888888999888888888888888889988888888888888777766654322110  00      00  00000


Q ss_pred             ---------------------c-------ceEEeehhHHHHHHHHhhHHHH----HHHHHhhcCCChhHHHHHHHHHHHH
Q 008185          433 ---------------------N-------EVFVLCFAGLAETLAQFKLLPF----SMLLARLCPQGCEGSLTSFSASALC  480 (574)
Q Consensus       433 ---------------------~-------~~~~l~~~~l~~~~~~~~~~p~----~~l~~~~~p~~~~gt~~gl~~~~~~  480 (574)
                                           +       .....+...+.+.+.++.-.|.    ..++-|.+.++....+.|+..++..
T Consensus       204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~  283 (735)
T KOG3626|consen  204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI  283 (735)
T ss_pred             ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence                                 0       0011111222233333333333    3567788888888999999999999


Q ss_pred             hHHHHHHHHHHHHHHhh-Cc-------ccCC--C-CChhHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 008185          481 LSSIASGFLGVGLASLT-GI-------TFGD--Y-SSLPVGIVIQFLAALLPLIWIHNVPMSETIIE  536 (574)
Q Consensus       481 lg~~lg~~i~g~l~~~~-g~-------~~~~--~-~~l~~~~li~~~~~ll~l~~~~~vp~~~~~~~  536 (574)
                      +|=++|=++|+++...+ ..       +..|  + ...|..+++++.+.+++.+.+++.|++.++++
T Consensus       284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~  350 (735)
T KOG3626|consen  284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ  350 (735)
T ss_pred             hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence            99888888888877643 22       1122  2 34567789999998888888899998777654

>PF12832 MFS_1_like: MFS_1 like family

Probab=93.65  E-value=0.24  Score=39.46  Aligned_cols=46  Identities=20%  Similarity=0.225  Sum_probs=40.4

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 008185          364 QCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQI  409 (574)
Q Consensus       364 ~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~l  409 (574)
                      +..|+++.++|++....-+..+++.++++.++||.++++.......
T Consensus        28 ~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen   28 KQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            3599999999999999999999999999999999999888765543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.49  E-value=0.89  Score=48.11  Aligned_cols=59  Identities=12%  Similarity=-0.024  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          212 PNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       212 ~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      +.+++..+.-|+.++...+-.-..+.|..++++|..+++....+-++|.+++.+++-.+
T Consensus       336 ~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  336 WIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33334444445544555544455677777889999999999998899999888877544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.48  E-value=0.5  Score=50.94  Aligned_cols=132  Identities=18%  Similarity=0.187  Sum_probs=66.7

Q ss_pred             eeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC----chhHH-HHHHHHHHHHHhHHHHhhhhhhcccCcCc
Q 008185          359 FCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVP----LRKLV-GAVQILYASSLLLDLILVRQINLQFGVPN  433 (574)
Q Consensus       359 ~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~----~r~ll-~~~~ll~~~~~l~~l~l~~~~~~~~~~~~  433 (574)
                      .+|+.+.+|+++.+.........+.-.+ -++++.+.|-++    +||.+ +++.++..+. ...+.+....      ..
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~-~~~~~~~~~~------~~   84 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVS-ALVLALLPAS------ES   84 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHH-HHHHHhcccc------cc
Confidence            3467888999998877665444433332 234455555442    34443 3444443222 2222221110      00


Q ss_pred             ceEEeehhHHHHHHH-HhhHHHHHHHHHhhc---CCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          434 EVFVLCFAGLAETLA-QFKLLPFSMLLARLC---PQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       434 ~~~~l~~~~l~~~~~-~~~~~p~~~l~~~~~---p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      ..-......+...++ .+.-+..=++..|..   |++ +|...+.......+|+.++..++|.+.+..+.
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~  153 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGP  153 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence            110011111111111 111122223344443   444 78888888889999999999999998887654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=93.29  E-value=0.97  Score=41.30  Aligned_cols=105  Identities=12%  Similarity=-0.078  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH
Q 008185          376 SRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF  455 (574)
Q Consensus       376 ~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~  455 (574)
                      .+....+..++    .+.+.++.+.|..++++.+++.+... ...          .++.+..+....+.++.+...+..-
T Consensus        46 ~Y~~~~~s~l~----~P~iv~~lg~K~sm~lg~~~y~~y~~-~~~----------~~~~~~l~~~s~l~G~~~a~lW~aq  110 (156)
T PF05978_consen   46 LYGSFAISCLF----APSIVNKLGPKWSMILGSLGYAIYIA-SFF----------YPNSYTLYPASALLGFGAALLWTAQ  110 (156)
T ss_pred             HHHHHHHHHHh----HHHHHHHHhhHHHHHHHHHHHHHHHH-HHH----------hhhHHHHHHHHHHHhhhhHHhhHhh
Confidence            34444444444    44455667888888888776654322 111          1222222222333333333444444


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          456 SMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       456 ~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      -.++.+...++.+++..|++-.+.+.+..+|.++.-.+..
T Consensus       111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678888899999999999999999988888777655543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.95  E-value=0.01  Score=57.74  Aligned_cols=72  Identities=25%  Similarity=0.460  Sum_probs=41.5

Q ss_pred             HHHHHHHhhhccchh-hhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccc------cccCCCccchhHhHHH
Q 008185          120 CGLGYWVQGFRCFPW-LALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDA------LYIGGAHRIPYICIGV  191 (574)
Q Consensus       120 ~~~~~f~~~~~~~~~-~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~------~~~~G~rRk~~l~i~~  191 (574)
                      ...+++..-+....| ..+..++++ .|+++.....++-+..+..++ .|+.|..+|.      +...| ||+.|-.++.
T Consensus        22 yGvGHmlNDitAScWFTYlllfltq-iglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G-~~~~wh~~gt   99 (412)
T KOG4830|consen   22 YGVGHMLNDITASCWFTYLLLFLTQ-IGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIG-RRMSWHLIGT   99 (412)
T ss_pred             echhHHHhhHHHHHHHHHHHHHHHH-hcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhc-ceeeeeeccc
Confidence            455555544432111 112225555 688887777766666666666 7888877774      12234 7787776665


Q ss_pred             HH
Q 008185          192 FL  193 (574)
Q Consensus       192 ~~  193 (574)
                      ++
T Consensus       100 ~l  101 (412)
T KOG4830|consen  100 VL  101 (412)
T ss_pred             EE
Confidence            54

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=92.62  E-value=0.26  Score=39.96  Aligned_cols=69  Identities=20%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhhhh-hheeeccccccCCCccchhHhHHHHHHHHHHHHhhccc
Q 008185          132 FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVAKP-LYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFP  205 (574)
Q Consensus       132 ~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~~p-l~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~  205 (574)
                      +.+.++.+.+.++.++|.++.+++.+...++|.++- ..+.+.++     .+++..+..+.+...++...+++..
T Consensus         9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-----SRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555568888899999999999999999999855 45666664     2445556667777777777666654

Note that many members are hypothetical proteins.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=92.45  E-value=1.7  Score=49.43  Aligned_cols=158  Identities=16%  Similarity=0.039  Sum_probs=75.5

Q ss_pred             eehccccCCCchhHHHHHHH----HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcce
Q 008185          360 CYQTQCLNINPSVIGMSRVI----GQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEV  435 (574)
Q Consensus       360 ~~~~~~~g~s~~~~gl~~i~----~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~  435 (574)
                      .|+++.+|++.......+..    ..+..++|+.+.+   +++|+++.+.++.+++.+...+.. +. ....... +...
T Consensus        12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD---~~lG~~~tIl~~~ii~~lG~~lla-i~-a~~~~~~-~~~~   85 (654)
T TIGR00926        12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIAD---GWLGKFKTILYLSIVYVVGHALLS-FG-AIPSSGH-PLHD   85 (654)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHH-hc-cCccccc-chHH
Confidence            35556688876655443222    2223333444443   345777777777666655443221 11 0000000 0000


Q ss_pred             EEeehhHHHHHHHHhhHHHH-HHHHHhhcCCC---hhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHH
Q 008185          436 FVLCFAGLAETLAQFKLLPF-SMLLARLCPQG---CEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGI  511 (574)
Q Consensus       436 ~~l~~~~l~~~~~~~~~~p~-~~l~~~~~p~~---~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~  511 (574)
                      ......+....+|....-|. .++..+-.+++   .+-+.|.++....|+|+.+++.+.+.+.+..+-- +.+...+..+
T Consensus        86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f-g~~~~~~~aF  164 (654)
T TIGR00926        86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCF-GCQDCYPLAF  164 (654)
T ss_pred             HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCcchHHHH
Confidence            10111122222332223332 34555555543   3567788888888888888888887776543210 1122345556


Q ss_pred             HHHHHHHHHHHHH
Q 008185          512 VIQFLAALLPLIW  524 (574)
Q Consensus       512 li~~~~~ll~l~~  524 (574)
                      .+++++.+++++.
T Consensus       165 ~i~~i~m~ia~lv  177 (654)
T TIGR00926       165 GVPAILMILALIV  177 (654)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666655554433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.09  E-value=3  Score=45.59  Aligned_cols=126  Identities=19%  Similarity=0.178  Sum_probs=71.2

Q ss_pred             CchhHHHHHHHH-HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcc-------------
Q 008185          369 NPSVIGMSRVIG-QSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNE-------------  434 (574)
Q Consensus       369 s~~~~gl~~i~~-~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~-------------  434 (574)
                      +++.+-.+-+.. .-++++-..++.++.+++++.+++.+..........+ +.++.-.+...-.++.             
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~-f~~vlyP~~~~lhp~~~~~~~~~~~~~~~  134 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFAL-FAFVLYPNRDILHPDAFADKLLAILPPGF  134 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHHHHhhchhhcCCCHHHHHhhhhccchH
Confidence            455555553322 2355556778999999999999876554333222221 1111101100000110             


Q ss_pred             ---------eEEeehhHHHHHHHHhhH-HHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          435 ---------VFVLCFAGLAETLAQFKL-LPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       435 ---------~~~l~~~~l~~~~~~~~~-~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                               |-..++..+.+..+.+.. .-.+.+++|++..++..+.|+++....|+|..+++.+...+.+
T Consensus       135 ~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  135 KGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     000011122233333222 2246789999999999999999999999999888877777766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=90.40  E-value=4.3  Score=44.81  Aligned_cols=49  Identities=16%  Similarity=0.110  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHH-HHhhCcc
Q 008185          452 LLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGL-ASLTGIT  500 (574)
Q Consensus       452 ~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l-~~~~g~~  500 (574)
                      ..|+.+-+......+..|...|-......+|+.+|+++.+++ ...+|..
T Consensus       127 ~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~  176 (521)
T PRK03612        127 EIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLI  176 (521)
T ss_pred             HHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchH
Confidence            356543333222222345666777777888999998877664 4577753

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.30  E-value=4.4  Score=40.30  Aligned_cols=134  Identities=16%  Similarity=0.115  Sum_probs=74.6

Q ss_pred             cccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcc
Q 008185          355 SGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNE  434 (574)
Q Consensus       355 ~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~  434 (574)
                      .+.+.||....|||..+++|.+++.+.-.+++-+.+.+-+.++-|+|+.-..-++.+.++++      +.      ...+
T Consensus        56 QgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi------TK------hSpq  123 (454)
T KOG4332|consen   56 QGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI------TK------HSPQ  123 (454)
T ss_pred             cCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH------hh------cCCc
Confidence            34556677778999999999998888777777777788899998888753322333333322      11      2345


Q ss_pred             eEEeehhHHHHHHHH-hhHHHH-HHHHHhhcCC-----ChhHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhCcc
Q 008185          435 VFVLCFAGLAETLAQ-FKLLPF-SMLLARLCPQ-----GCEGSLTSFSASALC-LSSIASGFLGVGLASLTGIT  500 (574)
Q Consensus       435 ~~~l~~~~l~~~~~~-~~~~p~-~~l~~~~~p~-----~~~gt~~gl~~~~~~-lg~~lg~~i~g~l~~~~g~~  500 (574)
                      +.++..+-..+++.. ..+..+ .-++.|...+     +-....++-...+.| +-..++...+-.+.++++..
T Consensus       124 YkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slG  197 (454)
T KOG4332|consen  124 YKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLG  197 (454)
T ss_pred             eEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccC
Confidence            555544433333332 222222 2346665522     222333333333333 33344555666677777654

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=89.83  E-value=13  Score=39.63  Aligned_cols=71  Identities=21%  Similarity=0.242  Sum_probs=42.2

Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCHH
Q 008185          457 MLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSET  533 (574)
Q Consensus       457 ~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp~~~~  533 (574)
                      .++-...|++..-++.+-..+..-+|..+|..+|=.+...-+   .+|..   +..+......+++++.+++|..+.
T Consensus       116 sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~---~sy~~---L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  116 SYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG---VSYFQ---LNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCHHH---HHHHHHHHHHHHHHHHHHcCCCCc
Confidence            444455678877788888888788888888777766655322   22322   223333333445555566776544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=86.96  E-value=2.4  Score=34.40  Aligned_cols=54  Identities=17%  Similarity=0.015  Sum_probs=43.7

Q ss_pred             ehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 008185          361 YQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASS  414 (574)
Q Consensus       361 ~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~  414 (574)
                      ...++.++|..+.|++...+.+|-++|.....++.++...++++..+.++.++.
T Consensus        17 ~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~   70 (85)
T PF06779_consen   17 LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLS   70 (85)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            456779999999999999999999999999998888777777777665554443

Note that many members are hypothetical proteins.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=85.57  E-value=9.3  Score=37.03  Aligned_cols=117  Identities=20%  Similarity=0.093  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHh
Q 008185          371 SVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQF  450 (574)
Q Consensus       371 ~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  450 (574)
                      ...++......++..++..+.+++.||+++|+.+..+........+. ..+...       ...+. +.......+++..
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~-~~~~~~~~g~~~~  109 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLL-LALAPN-------VGLAL-LLILRLLQGLGGG  109 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH-HHhCcc-------chHHH-HHHHHHHHHhhhH
Confidence            35667777777777777788889999888886666555432222111 111100       00111 1111111222222


Q ss_pred             hHHH-HHHHHHhhcCC-ChhHHHHHHHHH-HHHhHHHHHHHHHHHHHHh
Q 008185          451 KLLP-FSMLLARLCPQ-GCEGSLTSFSAS-ALCLSSIASGFLGVGLASL  496 (574)
Q Consensus       451 ~~~p-~~~l~~~~~p~-~~~gt~~gl~~~-~~~lg~~lg~~i~g~l~~~  496 (574)
                      ...| ...++.+..|+ +.++...+.... ...+|..+++.+++.+...
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         110 GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333 35678888887 678888888888 5777888888777777665

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=81.92  E-value=14  Score=36.70  Aligned_cols=106  Identities=15%  Similarity=0.068  Sum_probs=50.1

Q ss_pred             Hhhhhhhhhhh-heeeccccccCCCccchhHh----HHHHHHHHHHHHhhccc-CccchHHHHHHHHHHH-HHHHHHHHH
Q 008185          158 SGNLPMVAKPL-YGILSDALYIGGAHRIPYIC----IGVFLQILSWGPLALFP-VAAKALPNLMACVLLS-NLGASITEV  230 (574)
Q Consensus       158 ~~~l~~~~~pl-~G~lsD~~~~~G~rRk~~l~----i~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~-~~g~~~~~~  230 (574)
                      ++..++.++|+ .|+.+-.    .++||+++.    .+.++.+++.+..+... ++......+.++-|+. .++-++..+
T Consensus       149 ~fv~g~~~G~~~ig~~nkt----~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V  224 (267)
T PF07672_consen  149 LFVAGYFLGPFTIGLWNKT----NYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV  224 (267)
T ss_pred             HHHHHHhhhceeeccchhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            34445666774 5877764    468888865    33444444444432222 2221223333333332 223333332


Q ss_pred             HHHHHHHhh--hcccCccchHHHHHHHHHHHHHHHHHHHH
Q 008185          231 AKDALVAEY--GQKNGIVGLQSYAFMAAASGGILGNLFGG  268 (574)
Q Consensus       231 ~~~a~i~d~--~~~~~rg~~~s~~~~~~~~G~~igp~igg  268 (574)
                      ... +--|.  .+|++-|...|+.+..+.+.-.+.-++..
T Consensus       225 iL~-lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S  263 (267)
T PF07672_consen  225 ILN-LPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILS  263 (267)
T ss_pred             Hhc-ChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHH
Confidence            211 11121  12355677777777666665555554443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=81.64  E-value=0.66  Score=49.33  Aligned_cols=127  Identities=18%  Similarity=0.084  Sum_probs=70.9

Q ss_pred             cccCCCchhHHHHHHHHHHHHHHH----HHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcc-e---
Q 008185          364 QCLNINPSVIGMSRVIGQSMLLSL----TVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNE-V---  435 (574)
Q Consensus       364 ~~~g~s~~~~gl~~i~~~ig~lig----~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~-~---  435 (574)
                      ..+|.+....++....+-+..++-    +...+++-.|+||||.++.+..+.+.+.++.+.........++ ++. .   
T Consensus        60 ~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg-d~~~~~~~  138 (498)
T KOG0637|consen   60 QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG-DNERKPVK  138 (498)
T ss_pred             HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc-CCcccccc
Confidence            347777777777655443333322    2345666678999998877665555555543322222111111 111 1   


Q ss_pred             -EE----eehhHHHHHHHHhhHHHHHHHHHhhcCCChhHH-HHHHHHHHHHhHHHHHHHHHH
Q 008185          436 -FV----LCFAGLAETLAQFKLLPFSMLLARLCPQGCEGS-LTSFSASALCLSSIASGFLGV  491 (574)
Q Consensus       436 -~~----l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt-~~gl~~~~~~lg~~lg~~i~g  491 (574)
                       ..    +....+..+..+....|.-+++.+++..+.+.+ +.+.+..+..+|+.+|-.+++
T Consensus       139 ~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  139 PRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence             11    111222333344555677788899987777766 777777777777777655554

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

Probab=81.56  E-value=37  Score=34.37  Aligned_cols=54  Identities=19%  Similarity=0.281  Sum_probs=33.7

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhhhhhhheeeccccccCCCccchhHhHHHHHHHHHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMVAKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGP  200 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~  200 (574)
                      .++|..|+-....++++++....++-+|    -.++ .++||+|--.+  +++..++..++
T Consensus        50 LLADa~Hml~D~~al~lal~A~~~a~r~----~~~~-~TfGy~R~eiL--aa~~nav~Li~  103 (296)
T COG1230          50 LLADALHMLSDALALLLALIAIKLARRP----ATKR-FTFGYKRLEIL--AAFLNALLLIV  103 (296)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhcCC----CCCC-CCccHhHHHHH--HHHHHHHHHHH
Confidence            6788888888888888887776666555    2333 35677665443  44444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	574
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 81/554 (14%), Positives = 143/554 (25%), Gaps = 191/554 (34%)

Query: 12  FITIIPK----VPRFQKSSLKPVLCSSLNNRIHNNDNNSSSSRG--SNSVSKFLNSSTKA 65
           F T++ K    V +F +  L+      L + I       S           +  N +   
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 66  KTAHV----LVTTTESSSVSLKESKRLGSWAGGGGDEERRRDFGEVGINNFNKQMLVL-- 119
              +V           + + L+ +K +    G  G        G        K  + L  
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLID-GVLG-------SG--------KTWVALDV 170

Query: 120 CGLGYWVQGFRCFP--WLALN--------FHMAHNLSLH--PSTLQLVQNSGNLPMVAKP 167
           C L Y VQ    F   WL L           M   L     P+      +S N+ +    
Sbjct: 171 C-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 168 LYGILSDALYIGGAHRIPY-ICIGVFLQILS--WGP--LALFPVAAKALPNLMACVLLSN 222
           +   L   L      + PY  C    L +L           F ++ K        +LL+ 
Sbjct: 230 IQAELRRLL----KSK-PYENC----LLVLLNVQNAKAWNAFNLSCK--------ILLTT 272

Query: 223 LGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLV 282
               +T+    A        +  + L                         TP       
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTL-------------------------TP------- 300

Query: 283 FAVLLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLT 342
                           +E   L  + Y +   + + + +       ++ I E       T
Sbjct: 301 ----------------DEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 343 W----LVASVAMVPVLSGSMFCYQTQCLN-INPSVIGMSRVIGQSMLLSLTVFYD----- 392
           W     V    +  ++           LN + P+         + M   L+VF       
Sbjct: 344 WDNWKHVNCDKLTTIIE--------SSLNVLEPAEY-------RKMFDRLSVFPPSAHIP 388

Query: 393 -----RYWKKVPLRKLVGAVQILYASSLL---------------LDL------------I 420
                  W  V    ++  V  L+  SL+               L+L             
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 421 LVRQINLQFGVPNEVFV---------------LCFAGLAETLAQFK--LLPFSMLLARLC 463
           +V   N+     ++  +               L      E +  F+   L F  L  ++ 
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 464 ----PQGCEGSLTS 473
                    GS+ +
Sbjct: 509 HDSTAWNASGSILN 522

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 5e-07
 Identities = 50/305 (16%), Positives = 82/305 (26%), Gaps = 97/305 (31%)

Query: 342 TWLVASVA----MVPVLSGSMF------CY---------QTQCLNINPSVIGMSRVIGQS 382
           TW+   V     +   +   +F      C          Q     I+P+           
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-------SR 216

Query: 383 MLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLL-LD-----------------LILVRQ 424
              S  +    +  +  LR+L+      Y + LL L                  L+  R 
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLL--KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 425 IN----LQFGVPNEVFV-LCFAGL--AETLAQF-KLLPFSMLLARLCPQGCEGSLTSFSA 476
                 L       + +      L   E  +   K L        L  +    +      
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNP----- 327

Query: 477 SALCLSSIASGFLGVGLA-------------------SLTGITFGD----YSSL---PVG 510
               LS IA   +  GLA                   SL  +   +    +  L   P  
Sbjct: 328 --RRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 511 IVIQFLAALLPLIWIHNVPM-SETIIEKGRKRGLSRRTRKNRRVGRVVIGSIFI-YRRER 568
             I     LL LIW   +      ++ K  K  L  +  K   +    I SI++  + + 
Sbjct: 385 AHIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKL 439

Query: 569 ESEAQ 573
           E+E  
Sbjct: 440 ENEYA 444

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	574
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.92
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.87
2xut_A	524	Proton/peptide symporter family protein; transport	99.84
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.27
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.92
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.74
2xut_A	524	Proton/peptide symporter family protein; transport	98.61
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.6
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.43

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.97  E-value=5.5e-30  Score=273.11  Aligned_cols=369  Identities=11%  Similarity=-0.004  Sum_probs=258.4

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|.....+++.++..++.. ......+ .+.+++ .+..+.+++.+++.++..+ .|++|+++||+     +||+.++++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~   98 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPAG   98 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-----CchHHHHHH
Confidence            5666666777777777665 4444444 456668 9999999999999998866 88999999995     577788888


Q ss_pred             HHHHHHHHHHhhc----ccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHH
Q 008185          191 VFLQILSWGPLAL----FPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLF  266 (574)
Q Consensus       191 ~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~i  266 (574)
                      .++..++..++++    ..+    ++.++++|++.+++.+...+...+++.|..++++|++++++...+..+|.++||.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  174 (451)
T 1pw4_A           99 LILAAAVMLFMGFVPWATSS----IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL  174 (451)
T ss_dssp             HHHHHHHHHHHHHCHHHHSS----SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccc----HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8888888877776    432    46678899999999998888889999999999999999999999999999999999


Q ss_pred             HHHhhccCC-hhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcchhh---hh--hhhHHHHHHH--HHHHHcchhh
Q 008185          267 GGYFLLKTP-PTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNVASK---SI--AQSIKKQFSD--LIATIGEESI  337 (574)
Q Consensus       267 gg~l~~~~g-wr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~~~~---~~--~~~~~~~~~~--~~~~~~~~~v  337 (574)
                      ++++.+..| ||+.|++.+++.++..++. +++||++......+.++.+++   ..  .+..+...++  .++.+++|.+
T Consensus       175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (451)
T 1pw4_A          175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL  254 (451)
T ss_dssp             HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHH
Confidence            999888888 9999999998887766654 578887654321111000000   00  0000001111  2345677777


Q ss_pred             HHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHH
Q 008185          338 SYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKV--PLRKLVGAVQILYASSL  415 (574)
Q Consensus       338 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~--~~r~ll~~~~ll~~~~~  415 (574)
                      +...+..++...........++.|..+.+|+++.+.|+......++.+++..+.+++.||+  ++|+.+..+.++.....
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  334 (451)
T 1pw4_A          255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA  334 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            7666555543333333334455667777999999999999999999999999999999998  88888776655544222


Q ss_pred             hHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHh-HHHHHHHHHHHHH
Q 008185          416 LLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCL-SSIASGFLGVGLA  494 (574)
Q Consensus       416 l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~l-g~~lg~~i~g~l~  494 (574)
                      ++.+.+..       ..+.+.......+..........+...+..|.+|++.+|+++|+.+.+.++ |..++|.+.|.+.
T Consensus       335 ~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~  407 (451)
T 1pw4_A          335 TIVYWMNP-------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  407 (451)
T ss_dssp             HHHTTSCC-------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111110       001111111111111111222233357789999999999999999999999 9999999999999


Q ss_pred             HhhCc
Q 008185          495 SLTGI  499 (574)
Q Consensus       495 ~~~g~  499 (574)
                      +..|+
T Consensus       408 ~~~g~  412 (451)
T 1pw4_A          408 DFFGW  412 (451)
T ss_dssp             HSSCS
T ss_pred             HhcCc
Confidence            97663

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=1.3e-27  Score=258.19  Aligned_cols=426  Identities=14%  Similarity=0.064  Sum_probs=255.9

Q ss_pred             hhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcC--------CChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCcc
Q 008185          114 KQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLS--------LHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHR  183 (574)
Q Consensus       114 ~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~--------~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rR  183 (574)
                      |.+.+..+++.+..|++. +...+++ .++++++        .+..+.+++.+.+.++..+ .+++|+++||+     +|
T Consensus        11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-----GR   84 (491)
T 4gc0_A           11 FSITLVATLGGLLFGYDTAVISGTVE-SLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-----GR   84 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGTHH-HHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-----CH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cC
Confidence            334444456677778776 5555554 3444453        2345678888889998888 55789999984     68


Q ss_pred             chhHhHHHHHHHHHHHHhhcccC--------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchH
Q 008185          184 IPYICIGVFLQILSWGPLALFPV--------------AAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQ  249 (574)
Q Consensus       184 k~~l~i~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~  249 (574)
                      |+.+.++.++..++.++.++...              ...++++++++|+++|+|.+...+....++.|..|+++|+...
T Consensus        85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~  164 (491)
T 4gc0_A           85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV  164 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence            88888888877777776664211              0123678899999999999998888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc--------CChhHHHHHHHHHHHHHHHHhhhcccccccccccchhcch-----hh-
Q 008185          250 SYAFMAAASGGILGNLFGGYFLLK--------TPPTTMFLVFAVLLSLQLAISFSAREESLGLAQVSYQNVA-----SK-  315 (574)
Q Consensus       250 s~~~~~~~~G~~igp~igg~l~~~--------~gwr~~f~i~ai~~~~~~~~~~~lpEt~~~~~~~~~~~~~-----~~-  315 (574)
                      ++.+.+..+|.++++.++..+...        .+||+.+.+.++..++..+..+++||++++...+++.+.+     +. 
T Consensus       165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~  244 (491)
T 4gc0_A          165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM  244 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence            999999999999999888776542        3588888877776666666677899998775432221111     00 


Q ss_pred             --hh-hh---hHHHHHHH------HHHHHcchhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHH
Q 008185          316 --SI-AQ---SIKKQFSD------LIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSM  383 (574)
Q Consensus       316 --~~-~~---~~~~~~~~------~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig  383 (574)
                        .. .+   ..++....      ....+..+..........+...........+..+..+..+.+........+...+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (491)
T 4gc0_A          245 GNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVI  324 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHH
Confidence              00 00   00000000      01112222222222222111111111111111122344666666666666777777


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHHH-HHHHHhh
Q 008185          384 LLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLPF-SMLLARL  462 (574)
Q Consensus       384 ~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~-~~l~~~~  462 (574)
                      .+++..+..++.+|+++|+.+..+..+..++.+........      ....+..+....+..........|. .++.+|+
T Consensus       325 ~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~  398 (491)
T 4gc0_A          325 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEI  398 (491)
T ss_dssp             HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            88888888889999999998887766655544322111110      0111111111122222223334444 4678999


Q ss_pred             cCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Q 008185          463 CPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKGRKRG  542 (574)
Q Consensus       463 ~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~l~~~~~vp~~~~~~~~~~~~~  542 (574)
                      +|.+.|+++.|+.+.+.++++.+++.+.+.+.+...... .+...+.+++++++..+..++.++++||||++++||.++-
T Consensus       399 fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~  477 (491)
T 4gc0_A          399 FPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL  477 (491)
T ss_dssp             SCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence            999999999999999999999998887766654322110 0111122233333333333444678999999999999888


Q ss_pred             CCccCccccc
Q 008185          543 LSRRTRKNRR  552 (574)
Q Consensus       543 ~~~~~~~~~~  552 (574)
                      ++++.+|.++
T Consensus       478 f~~~~~~~~~  487 (491)
T 4gc0_A          478 WEPETKKTQQ  487 (491)
T ss_dssp             TC--------
T ss_pred             hCCCCccccc
Confidence            7766654443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.96  E-value=8.5e-27  Score=247.65  Aligned_cols=351  Identities=13%  Similarity=0.047  Sum_probs=249.2

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      ++..+..+++.++..++.. +.....+ .+++++|++..+.+++.+++.++..+ .|++|+++||+     +||+.++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~   97 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITG   97 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-----CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchHHHHHH
Confidence            4445555667777777765 4444444 46777999999999999999998766 88999999995     577777778


Q ss_pred             HHHHHHHHHHh---hcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHH
Q 008185          191 VFLQILSWGPL---ALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFG  267 (574)
Q Consensus       191 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~ig  267 (574)
                      .++..++..+.   ...++    ++.++++|++.++|.+...+...+++.|..++++|+.++++...+..+|.++||.++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~----~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  173 (438)
T 3o7q_A           98 LFLYALGAALFWPAAEIMN----YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccccc----HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777777766   44332    677889999999999999988899999999999999999999999999999999999


Q ss_pred             HHhh-ccCC-------------------------hhHHHHHHHHHHHHHHHHhhh--cccccccccccchhcchhhhhhh
Q 008185          268 GYFL-LKTP-------------------------PTTMFLVFAVLLSLQLAISFS--AREESLGLAQVSYQNVASKSIAQ  319 (574)
Q Consensus       268 g~l~-~~~g-------------------------wr~~f~i~ai~~~~~~~~~~~--lpEt~~~~~~~~~~~~~~~~~~~  319 (574)
                      +++. +..+                         ||+.|++.+++..+..++.++  .||++....+.+      +  .+
T Consensus       174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------~--~~  245 (438)
T 3o7q_A          174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA------K--QG  245 (438)
T ss_dssp             THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS------S--TT
T ss_pred             HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc------c--cc
Confidence            9998 5554                         999999888777666555443  455443211100      0  01


Q ss_pred             hHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceee-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008185          320 SIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCY-QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKV  398 (574)
Q Consensus       320 ~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~  398 (574)
                      ..+   +..++.+++|.++...+..++............+.| ..+.+|+++.+.++......++.+++..+.+++.||+
T Consensus       246 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~  322 (438)
T 3o7q_A          246 SFS---ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF  322 (438)
T ss_dssp             SHH---HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             chh---hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111   233455788888776655544222222233334556 7777899999999998888999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHHhhHHH-HHHHHHhhcCCChhHHHHHHHHH
Q 008185          399 PLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQFKLLP-FSMLLARLCPQGCEGSLTSFSAS  477 (574)
Q Consensus       399 ~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p-~~~l~~~~~p~~~~gt~~gl~~~  477 (574)
                      ++|+++..+.++..+..+.. ...         ++.+. .....+. +++.....| ...+..|..|++ ++++.++.. 
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  388 (438)
T 3o7q_A          323 APHKVLAAYALIAMALCLIS-AFA---------GGHVG-LIALTLC-SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-  388 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-HHC---------CHHHH-HHHHHHH-HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHHHHHH-HHc---------CCcHH-HHHHHHH-HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence            99998887776655443321 111         11111 1111122 222222333 356668888866 888888776 


Q ss_pred             HHHhHHHHHHHHHHHHHHhhC
Q 008185          478 ALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       478 ~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      ...+|..++|.+.|.+.+..|
T Consensus       389 ~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          389 MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            677999999999999999887

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.93  E-value=8.3e-25  Score=236.33  Aligned_cols=365  Identities=13%  Similarity=0.027  Sum_probs=219.9

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHh-----cCCChhHHHHHHHHhhhhhhh-hhhheeeccc-cccCCCccchhHhHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHN-----LSLHPSTLQLVQNSGNLPMVA-KPLYGILSDA-LYIGGAHRIPYICIGV  191 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~-----~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~-~~~~G~rRk~~l~i~~  191 (574)
                      +.+..+...+.. ......+.+++++     +|++..+.+++.+++.++..+ .|++|+++|| +     +||+.+.++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-----g~r~~~~~~~   92 (491)
T 4aps_A           18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-----GARPAVFWGG   92 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHH
Confidence            333444444333 2333444566666     999999999999999998766 8889999998 5     5777777788


Q ss_pred             HHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--ccchHHHHHHHHHHHHHHHHHHHHH
Q 008185          192 FLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNG--IVGLQSYAFMAAASGGILGNLFGGY  269 (574)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~--rg~~~s~~~~~~~~G~~igp~igg~  269 (574)
                      ++..++..+++..++    .+.++++|++.++|.+...+...+++.|..++++  |+.++++++.+..+|.++||.++++
T Consensus        93 ~~~~~~~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  168 (491)
T 4aps_A           93 VLIMLGHIVLALPFG----ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA  168 (491)
T ss_dssp             HHHHHHHHHHHSCCS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH
Confidence            887887777766543    4567889999999999888888999999999887  6777787889999999999999999


Q ss_pred             hhccCChhHHHHHHHHHHHHHHHHhh-hcccccccccccchhcchhhhhhhhHHH-------------------------
Q 008185          270 FLLKTPPTTMFLVFAVLLSLQLAISF-SAREESLGLAQVSYQNVASKSIAQSIKK-------------------------  323 (574)
Q Consensus       270 l~~~~gwr~~f~i~ai~~~~~~~~~~-~lpEt~~~~~~~~~~~~~~~~~~~~~~~-------------------------  323 (574)
                      +.+..|||+.|++.++..++..++.+ ..|+...+..+..++..++++..+..+.                         
T Consensus       169 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~  248 (491)
T 4aps_A          169 AQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPA  248 (491)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence            99989999999998777666555443 2232211110000000000000000000                         


Q ss_pred             -------------------HHHHHHH--HHcc--hhhHHHHHHHHhHhhhcccccccceeehccccCCCchhHHHHHHHH
Q 008185          324 -------------------QFSDLIA--TIGE--ESISYPLTWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIG  380 (574)
Q Consensus       324 -------------------~~~~~~~--~~~~--~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~  380 (574)
                                         ..++...  ..++  ...+...+..++.+.........++.|..+..+.+....++.....
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (491)
T 4aps_A          249 YINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLN  328 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHH
T ss_pred             chhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccc
Confidence                               0000000  0011  1112222222222222223333445566666777756666666666


Q ss_pred             HHHHHHHHHHHHHHHhcCCchhHHH-----HHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhHHHHHHHH-hhHHH
Q 008185          381 QSMLLSLTVFYDRYWKKVPLRKLVG-----AVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAGLAETLAQ-FKLLP  454 (574)
Q Consensus       381 ~ig~lig~~l~~~l~~r~~~r~ll~-----~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~p  454 (574)
                      .++.+++..+.+++.+|+++|+...     .+.++.+++.+... ...... ...............+..+++. ....+
T Consensus       329 ~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~  406 (491)
T 4aps_A          329 PLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMA-IPGALY-GTSGKVSPLWLVGSWALVILGEMLISPV  406 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTH-HHHHHC-CCCTTCCTHHHHHHHHHHHHHHHTTTTH
T ss_pred             hHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH-HHHHhc-CCCCCccHHHHHHHHHHHHHHHHHHhHH
Confidence            7777777778888888888765433     34443333322211 111000 0000011111111222223332 32344


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008185          455 FSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLAS  495 (574)
Q Consensus       455 ~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~  495 (574)
                      ...+..|..|++.+|+++|+.+...++|..+++.+.+.+.+
T Consensus       407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~  447 (491)
T 4aps_A          407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA  447 (491)
T ss_dssp             HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56788999999999999999999999999999998776654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.92  E-value=4.8e-25  Score=229.74  Aligned_cols=347  Identities=16%  Similarity=0.062  Sum_probs=235.8

Q ss_pred             HHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH
Q 008185          120 CGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS  197 (574)
Q Consensus       120 ~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~  197 (574)
                      +++..+..++.. +..+..+ .+.+++|.++.+.+++.+++.++..+ .|++|+++||+     +||+.+.++.++..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~   78 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIA-DMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-----GRRPVILVGMSIFMLA   78 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-----CCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHHH
Confidence            444555555554 4444444 45777999999999999999998766 88999999985     4556666677777777


Q ss_pred             HHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 008185          198 WGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPT  277 (574)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr  277 (574)
                      ..+.+..+    +++.+++.|++.+++.+...+...+++.|..++++|++++++.+.+..+|.++||.+++++.+..|||
T Consensus        79 ~~~~~~~~----~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  154 (375)
T 2gfp_A           79 TLVAVTTS----SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR  154 (375)
T ss_dssp             HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHhc----cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence            77666653    25677888999999999888888999999999999999999999999999999999999999888999


Q ss_pred             HHHHHHHHHHHHHHHH-hhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccc
Q 008185          278 TMFLVFAVLLSLQLAI-SFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSG  356 (574)
Q Consensus       278 ~~f~i~ai~~~~~~~~-~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~  356 (574)
                      +.|++.++..++..+. .+++||++.+..+++       +..+       +.++.+++|.++...+..++.+........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (375)
T 2gfp_A          155 ACYLFLLVLCAGVTFSMARWMPETRPVDAPRT-------RLLT-------SYKTLFGNSGFNCYLLMLIGGLAGIAAFEA  220 (375)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC-------CTTT-------CSTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCcccCCCCcccc-------cHHH-------HHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence            9999998887777664 356888764422110       0001       112234556665554444442333333334


Q ss_pred             cceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceE
Q 008185          357 SMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVF  436 (574)
Q Consensus       357 ~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~  436 (574)
                      ..+.|..+.+|+++.+.|+......++.+++..+.+++.||.++ + ...+..+.....+..+.......     .+.+.
T Consensus       221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  293 (375)
T 2gfp_A          221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-L-MWQSVICCLLAGLLMWIPDWFGV-----MNVWT  293 (375)
T ss_dssp             HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-H-HHHHHHHHHHTSSSSSHHHHHHH-----HHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHhhhcc-----ccHHH
Confidence            45666777789999999999999999999999999998888765 2 22222221111111111110000     01111


Q ss_pred             EeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhC
Q 008185          437 VLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTG  498 (574)
Q Consensus       437 ~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g  498 (574)
                      ......+.....+........+..|..| +.+|+++|+.+...++|..+++.+.|.+.+..+
T Consensus       294 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  354 (375)
T 2gfp_A          294 LLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ  354 (375)
T ss_dssp             HHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            1111112221112223334567788888 899999999999999999999999988877644

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.87  E-value=7.1e-24  Score=225.06  Aligned_cols=364  Identities=12%  Similarity=0.083  Sum_probs=199.7

Q ss_pred             hhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHH---HHHhhcccCccc
Q 008185          134 WLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILS---WGPLALFPVAAK  209 (574)
Q Consensus       134 ~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~---~~~~~~~~~~~~  209 (574)
                      .+.++.++++++|+++.+.+++.+.+.++..+ +|++|+++||+     +||+.++++..+..+.   +.........  
T Consensus        27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-----Grr~~l~~~~~~~~~~~~~~~~~~~~~~~--   99 (417)
T 2cfq_A           27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWIITGMLVMFAPFFIFIFGPLL--   99 (417)
T ss_dssp             TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-----TTCCHHHHHHHHTTSCHHHHHHHTHHHHH--
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            34455678888999999999999999888766 88999999995     4555554444432221   1111111000  


Q ss_pred             hHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHH
Q 008185          210 ALPNLMACVLLSNL----GASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAV  285 (574)
Q Consensus       210 ~~~~l~~~~~l~~~----g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai  285 (574)
                       ...++..+++.+.    +.+........+..|..  ++++...+.......+|..+||.+++++.+ .+||+.|++.++
T Consensus       100 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~  175 (417)
T 2cfq_A          100 -QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS--RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG  175 (417)
T ss_dssp             -HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH--HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh--hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence             0001122332222    21111222233333331  345666776666778899999999999886 589999998876


Q ss_pred             HHHHHHHHhhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhHhhhcccccccceeehccc
Q 008185          286 LLSLQLAISFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVASVAMVPVLSGSMFCYQTQC  365 (574)
Q Consensus       286 ~~~~~~~~~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~  365 (574)
                      ..++..+..++.+|++.+..+.++++.+ +....    ..++.++.+++|.++...+..+........+...++.|+.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (417)
T 2cfq_A          176 CALILAVLLFFAKTDAPSSATVANAVGA-NHSAF----SLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF  250 (417)
T ss_dssp             TTTTHHHHSCSSCCCCSCSSCSSSSSSS-CCCCC----CHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCccccccccccccccc-ccccc----cHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6544434344444332111100000000 00000    112334456778776655443321111111212234444444


Q ss_pred             cC---CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehhH
Q 008185          366 LN---INPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFAG  442 (574)
Q Consensus       366 ~g---~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~~  442 (574)
                      ++   .+....|+......++.+++..+.+++.||+++|+++..+.++.++..+. +..         .++.+..+....
T Consensus       251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~  320 (417)
T 2cfq_A          251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG-SSF---------ATSALEVVILKT  320 (417)
T ss_dssp             SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HTT---------CCSHHHHHHHTT
T ss_pred             HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH-HHH---------hccHHHHHHHHH
Confidence            43   22445677777777778888888999999999999887666555443221 111         011111111111


Q ss_pred             HHHHHHHhhHHHHHHHHHhhcCCChhHHHHHH-HHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHHH
Q 008185          443 LAETLAQFKLLPFSMLLARLCPQGCEGSLTSF-SASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALLP  521 (574)
Q Consensus       443 l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl-~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll~  521 (574)
                      +..........+...+..|..|++.+|+++++ +++...+|+.++|.++|.+.+..|+        ...+.+.+++.+++
T Consensus       321 l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--------~~~f~~~~~~~l~~  392 (417)
T 2cfq_A          321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--------QGAYLVLGLVALGF  392 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--------HHHHHHHHHHHHHH
Confidence            11111112223345678999999999999999 4888889999999999998886552        23344444444444


Q ss_pred             HHH-HHhcCCC
Q 008185          522 LIW-IHNVPMS  531 (574)
Q Consensus       522 l~~-~~~vp~~  531 (574)
                      .+. +.+.||+
T Consensus       393 ~~~~~~~~~~~  403 (417)
T 2cfq_A          393 TLISVFTLSGP  403 (417)
T ss_dssp             HHHHTTSSCCS
T ss_pred             HHHHHhhhcCC
Confidence            444 3345543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.84  E-value=1.4e-20  Score=204.96  Aligned_cols=155  Identities=14%  Similarity=0.095  Sum_probs=125.1

Q ss_pred             hhhhHHHHHHhcC------CChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccC
Q 008185          134 WLALNFHMAHNLS------LHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPV  206 (574)
Q Consensus       134 ~~~~~~~l~~~~~------~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~  206 (574)
                      ...++.++.+++|      .++.+.+++.+++.++..+ .|+.|+++||+    .+||+.+.++.++..++..+++....
T Consensus        32 ~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----~g~r~~~~~~~~~~~~~~~~~~~~~~  107 (524)
T 2xut_A           32 RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF----FGKYNTILWLSLIYCVGHAFLAIFEH  107 (524)
T ss_dssp             HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS----SCSHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHhcc
Confidence            3445557888899      9999999999999988766 77899999983    16777777777777777776666641


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHH---HHHHHHHHHHHHHHHHHHhhccCChhHHHHHH
Q 008185          207 AAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSY---AFMAAASGGILGNLFGGYFLLKTPPTTMFLVF  283 (574)
Q Consensus       207 ~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~---~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~  283 (574)
                      +   .+.+++.|++.+++.+...+...+++.|..++++|+.+.+.   .+.+..+|.++||.+++++.+..|||+.|++.
T Consensus       108 ~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~  184 (524)
T 2xut_A          108 S---VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP  184 (524)
T ss_dssp             C---HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            2   56678889999999888888888999999999999776665   78888999999999999999889999999998


Q ss_pred             HHHHHHHHHHhh
Q 008185          284 AVLLSLQLAISF  295 (574)
Q Consensus       284 ai~~~~~~~~~~  295 (574)
                      +++.++..++.+
T Consensus       185 ~~~~~~~~~~~~  196 (524)
T 2xut_A          185 GVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            877666555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.27  E-value=3.9e-11  Score=127.00  Aligned_cols=178  Identities=9%  Similarity=-0.060  Sum_probs=124.4

Q ss_pred             hhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHH
Q 008185          114 KQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGV  191 (574)
Q Consensus       114 ~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~  191 (574)
                      +.++. +.+..++..+.. ......+.++++.+|.++.+.+++.++..++..+ .++.|+++||+.  + +||+.+.++.
T Consensus       252 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~-~~~~~~~~~~  327 (451)
T 1pw4_A          252 KLLWY-IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF--R-GNRGATGVFF  327 (451)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--T-TCHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-CCchhHHHHH
Confidence            33443 444444444432 3334455577777899999999998888777655 778999999830  1 4555555555


Q ss_pred             HHHH-HHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHH-HHHHHHHHHHH
Q 008185          192 FLQI-LSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAAS-GGILGNLFGGY  269 (574)
Q Consensus       192 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~-G~~igp~igg~  269 (574)
                      .+.. +++.++...++..  ...+++..++.+++.+........++.|..|+++|+.++++.+....+ |..+||.++|+
T Consensus       328 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~  405 (451)
T 1pw4_A          328 MTLVTIATIVYWMNPAGN--PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHHHHHHHTTSCCTTC--HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccC--HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 5555555543211  333445555556665555556678899999999999999999999999 99999999999


Q ss_pred             hhccCChhHHHHHHHHHHHHHHHHhhhc
Q 008185          270 FLLKTPPTTMFLVFAVLLSLQLAISFSA  297 (574)
Q Consensus       270 l~~~~gwr~~f~i~ai~~~~~~~~~~~l  297 (574)
                      +.+..||++.|++.+++.++..++.+++
T Consensus       406 l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          406 TVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988877766665443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.96  E-value=3.5e-09  Score=111.63  Aligned_cols=159  Identities=8%  Similarity=-0.046  Sum_probs=105.6

Q ss_pred             hHHHHHHhcCC---ChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHH
Q 008185          137 LNFHMAHNLSL---HPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALP  212 (574)
Q Consensus       137 ~~~~l~~~~~~---s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~  212 (574)
                      .+.++.+.++.   +....++..++..+...+ .++.|+++||+     +||+.+.++.++..+.+.+.+...+    ..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~----~~  313 (417)
T 2cfq_A          243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATS----AL  313 (417)
T ss_dssp             HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHTTCCS----HH
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhcc----HH
Confidence            44466665542   234456666655554433 66789999996     4555565666666666655554432    23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHH-HHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 008185          213 NLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSY-AFMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQL  291 (574)
Q Consensus       213 ~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~-~~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~  291 (574)
                      .+++..++.+++..........++.|..|++.||.++++ ++....+|.++||.++|++.+..|++..|++.+++.++..
T Consensus       314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~  393 (417)
T 2cfq_A          314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT  393 (417)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            344444444444443333446788999999999998887 4677789999999999999988899999999888777766


Q ss_pred             HHh-hhcccccccc
Q 008185          292 AIS-FSAREESLGL  304 (574)
Q Consensus       292 ~~~-~~lpEt~~~~  304 (574)
                      ++. ++.||++...
T Consensus       394 ~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          394 LISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHTTSSCCSCTTC
T ss_pred             HHHHhhhcCCCchH
Confidence            654 4577765443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.92  E-value=8.5e-09  Score=108.55  Aligned_cols=150  Identities=9%  Similarity=-0.101  Sum_probs=104.5

Q ss_pred             hhhHHH-HHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHH
Q 008185          135 LALNFH-MAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALP  212 (574)
Q Consensus       135 ~~~~~~-l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~  212 (574)
                      ...+.+ +++.+|.+..+.++..++..+...+ .++.|+++||+     +||+.+.++.++..++..++...++    ..
T Consensus       279 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~  349 (438)
T 3o7q_A          279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVLAAYALIAMALCLISAFAGG----HV  349 (438)
T ss_dssp             HHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHHHCCH----HH
T ss_pred             HHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHcCC----cH
Confidence            334456 7887899999999999888776655 77899999985     5666666676666666665555532    22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHH
Q 008185          213 NLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLLKTP-PTTMFLVFAVLLSLQL  291 (574)
Q Consensus       213 ~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~~~g-wr~~f~i~ai~~~~~~  291 (574)
                      . ++..++.+++.+...+...++..|..+++ ++.+.++.. ...+|..++|.+.|++.+..| +++.|++.++..++..
T Consensus       350 ~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          350 G-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             H-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            2 23334445555555556667777887755 777777655 556999999999999999888 9999998765554444


Q ss_pred             HHhhh
Q 008185          292 AISFS  296 (574)
Q Consensus       292 ~~~~~  296 (574)
                      +..++
T Consensus       427 ~~~~~  431 (438)
T 3o7q_A          427 IFARF  431 (438)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            33333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.74  E-value=2.2e-07  Score=99.43  Aligned_cols=131  Identities=14%  Similarity=0.002  Sum_probs=96.2

Q ss_pred             ceeehccc-----cCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCc
Q 008185          358 MFCYQTQC-----LNINPSVIGMSRVIGQSMLLSLTVFYDRYWKK-VPLRKLVGAVQILYASSLLLDLILVRQINLQFGV  431 (574)
Q Consensus       358 ~~~~~~~~-----~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r-~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~  431 (574)
                      ++.|..+.     +|+++.+.|+......++..++.++.+++.|| +++|+.+..+.++.++..++.. +.         
T Consensus        36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~---------  105 (491)
T 4aps_A           36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA-LP---------  105 (491)
T ss_dssp             HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-SC---------
T ss_pred             HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-Hh---------
Confidence            34455555     99999999999999999999999999999999 8999999888777665544221 11         


Q ss_pred             CcceEEeehhHHHHHHHH-hhHHHHHHHHHhhcCCCh--hHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          432 PNEVFVLCFAGLAETLAQ-FKLLPFSMLLARLCPQGC--EGSLTSFSASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       432 ~~~~~~l~~~~l~~~~~~-~~~~p~~~l~~~~~p~~~--~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                      ++.+. +....+..+++. ....+..+++.|.+|++.  |+.++++++...++|..++|.+++.+.+..|+
T Consensus       106 ~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  175 (491)
T 4aps_A          106 FGASA-LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY  175 (491)
T ss_dssp             CSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             hhHHH-HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            11111 111222223333 333344678899999988  88899999999999999999999999987764

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.61  E-value=1.2e-07  Score=102.50  Aligned_cols=133  Identities=7%  Similarity=-0.126  Sum_probs=93.6

Q ss_pred             cceeehccccC------CCchhHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhHHHHhhhhhhccc
Q 008185          357 SMFCYQTQCLN------INPSVIGMSRVIGQSMLLSLTVFYDRYWKKV-PLRKLVGAVQILYASSLLLDLILVRQINLQF  429 (574)
Q Consensus       357 ~~~~~~~~~~g------~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~-~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~  429 (574)
                      .++.|..+.+|      +++.+.|+......++.+++.++.+++.||+ ++|+++..+.++.++..+... +..      
T Consensus        34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~------  106 (524)
T 2xut_A           34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA-IFE------  106 (524)
T ss_dssp             HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH-HTS------
T ss_pred             HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-Hhc------
Confidence            34446667788      9999999999999999999999999999999 999998887776655443321 110      


Q ss_pred             CcCcceEEeehhHHHHHHH-HhhHHHHHHHHHhhcCCChhHHHHHH---HHHHHHhHHHHHHHHHHHHHHhhCc
Q 008185          430 GVPNEVFVLCFAGLAETLA-QFKLLPFSMLLARLCPQGCEGSLTSF---SASALCLSSIASGFLGVGLASLTGI  499 (574)
Q Consensus       430 ~~~~~~~~l~~~~l~~~~~-~~~~~p~~~l~~~~~p~~~~gt~~gl---~~~~~~lg~~lg~~i~g~l~~~~g~  499 (574)
                        .+.+..+. ..+..+++ +....+..+++.|.+|++.|++..+.   .+...++|..++|.+++.+.+..|+
T Consensus       107 --~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~  177 (524)
T 2xut_A          107 --HSVQGFYT-GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGA  177 (524)
T ss_dssp             --SCHHHHHH-HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCH
T ss_pred             --ccHHHHHH-HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence              01111111 12222333 33334456789999999999765444   8888999999999999988876553

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.60  E-value=1.1e-08  Score=105.46  Aligned_cols=153  Identities=10%  Similarity=0.036  Sum_probs=105.2

Q ss_pred             hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhhhhcccCcCcceEEeehh
Q 008185          362 QTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQINLQFGVPNEVFVLCFA  441 (574)
Q Consensus       362 ~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~~~~~~~~~~~~~~l~~~  441 (574)
                      ..+.+|.++.+.|+......++..++....+++.||+++|+.+..+.++..+..+... ...         +.+. +...
T Consensus        26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~---------~~~~-l~~~   94 (375)
T 2gfp_A           26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TTS---------SLTV-LIAA   94 (375)
T ss_dssp             HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HHH---------HHHH-HHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-Hhc---------cHHH-HHHH
Confidence            3567999999999999999999999999999999999999998888777666544322 111         1111 1111


Q ss_pred             HHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCcccCCCCChhHHHHHHHHHHHH
Q 008185          442 GLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSFSASALCLSSIASGFLGVGLASLTGITFGDYSSLPVGIVIQFLAALL  520 (574)
Q Consensus       442 ~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg~~lg~~i~g~l~~~~g~~~~~~~~l~~~~li~~~~~ll  520 (574)
                      .+..+++. ........++.|..|+++|++++++.+....+|..++|.+++.+.+..|+.        ..+.+.++..++
T Consensus        95 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~  166 (375)
T 2gfp_A           95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR--------ACYLFLLVLCAG  166 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH--------HHHHHHHHHHHH
Confidence            22223332 233334677899999999999999999999999999999999988766532        223333333333


Q ss_pred             HHH-HHHhcCCCHH
Q 008185          521 PLI-WIHNVPMSET  533 (574)
Q Consensus       521 ~l~-~~~~vp~~~~  533 (574)
                      ..+ ....+||+++
T Consensus       167 ~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          167 VTFSMARWMPETRP  180 (375)
T ss_dssp             HHCCCCCSSCCCST
T ss_pred             HHHHHHHHCcccCC
Confidence            333 3456777654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.43  E-value=2.1e-06  Score=91.69  Aligned_cols=158  Identities=11%  Similarity=-0.064  Sum_probs=97.0

Q ss_pred             HHHHhcCCChhHHHHHHHHhhhhhh-hhhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhccc-CccchHHHHHHH
Q 008185          140 HMAHNLSLHPSTLQLVQNSGNLPMV-AKPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFP-VAAKALPNLMAC  217 (574)
Q Consensus       140 ~l~~~~~~s~~~~~l~~s~~~l~~~-~~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~-~~~~~~~~l~~~  217 (574)
                      .+.+..+.+.........+..+... ..++.+.+.||+     +||+.++.+.....++...++... ...... ..++.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~  375 (491)
T 4gc0_A          302 EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-----GRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALLS  375 (491)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH-HHHHH
T ss_pred             HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-----cCcchhccchHHHHHHHHHHHHHHhcccchH-HHHHH
Confidence            3444567776666554444444333 366789999985     466666656665555544443321 111111 11122


Q ss_pred             H--HHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHhhc------cCChhHHHHHHHHHHHH
Q 008185          218 V--LLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYFLL------KTPPTTMFLVFAVLLSL  289 (574)
Q Consensus       218 ~--~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l~~------~~gwr~~f~i~ai~~~~  289 (574)
                      .  +...++.+.. +....+.+|..|.+.|+.++++......+|..+++.+...+.+      ..++.+.|++.+++.++
T Consensus       376 ~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~  454 (491)
T 4gc0_A          376 MLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL  454 (491)
T ss_dssp             HHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            2  2222222222 2234678999999999999999888888888888777655432      35677889998888887


Q ss_pred             HHHHh-hhcccccccc
Q 008185          290 QLAIS-FSAREESLGL  304 (574)
Q Consensus       290 ~~~~~-~~lpEt~~~~  304 (574)
                      ..++. +++|||+...
T Consensus       455 ~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          455 AALFMWKFVPETKGKT  470 (491)
T ss_dssp             HHHHHHHHCCCCTTCC
T ss_pred             HHHHHHheecCCCCCC
Confidence            77765 6899997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	574
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.91
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.15
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.1e-29  Score=261.15  Aligned_cols=374  Identities=10%  Similarity=-0.001  Sum_probs=246.4

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      +|.+...++++++...+.. ......+ +++| +|+|.++.|++.+++.+++.+ .|++|+++||+     +||+.+.++
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~r~~~~~~   95 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPAG   95 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHHHH
Confidence            6777776777777766653 3333333 5554 899999999999999999876 78999999994     677777778


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHHHHHHHHHh
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAASGGILGNLFGGYF  270 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~G~~igp~igg~l  270 (574)
                      .++..++..+.+.+.....++..++++|++.+++.+...+...+++.|..++++|+.++++...+..+|.+++|.+++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_          96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            87777777766665422222566788899999998888888889999999999999999999999999999999999887


Q ss_pred             hcc-CChhHHHHHHHHHHHHHHHHh-hhcccccccccccchhcc--h-hhhhhhhHHH----HHHHHHHHHcchhhHHHH
Q 008185          271 LLK-TPPTTMFLVFAVLLSLQLAIS-FSAREESLGLAQVSYQNV--A-SKSIAQSIKK----QFSDLIATIGEESISYPL  341 (574)
Q Consensus       271 ~~~-~gwr~~f~i~ai~~~~~~~~~-~~lpEt~~~~~~~~~~~~--~-~~~~~~~~~~----~~~~~~~~~~~~~v~~~~  341 (574)
                      ... .+||+.|++.+++.++..++. ++++|++........++.  + .+...+..++    .....+..++++.++...
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIA  255 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHH
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHH
Confidence            664 589999999988887776665 456665543321111100  0 0000000000    011223345677776655


Q ss_pred             HHHHhHhhhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHh
Q 008185          342 TWLVASVAMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLIL  421 (574)
Q Consensus       342 l~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l  421 (574)
                      ...++.+..........+.|..+.++++..+.+.......++.+++..+.+++.+|.++++......+...+..+....+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (447)
T d1pw4a_         256 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY  335 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHH
Confidence            54444333333333344556778899999999998888888888999999999988876654333322222221111111


Q ss_pred             hhhhhcccCcCcceEEeehhHHHHHHHH-hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhCc
Q 008185          422 VRQINLQFGVPNEVFVLCFAGLAETLAQ-FKLLPFSMLLARLCPQGCEGSLTSFSASALCLS-SIASGFLGVGLASLTGI  499 (574)
Q Consensus       422 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~p~~~l~~~~~p~~~~gt~~gl~~~~~~lg-~~lg~~i~g~l~~~~g~  499 (574)
                      ..     ....+.+.... ..+..+++. ........+..|..|++.+|++.|+.+.+.+++ ..++|.+.|.+.+..|+
T Consensus       336 ~~-----~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~  409 (447)
T d1pw4a_         336 WM-----NPAGNPTVDMI-CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  409 (447)
T ss_dssp             TS-----CCTTCHHHHHH-HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             Hh-----cccccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            10     00111111111 111112222 222333567889999999999999999988874 56689999999998774

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.7e-24  Score=219.59  Aligned_cols=398  Identities=12%  Similarity=0.084  Sum_probs=218.3

Q ss_pred             chhHHHHHHHHHHHhhhcc-chhhhhHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHH
Q 008185          113 NKQMLVLCGLGYWVQGFRC-FPWLALNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIG  190 (574)
Q Consensus       113 ~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~  190 (574)
                      ++.+|. +.+.+|...+.. +..+.++.++++++|+|++++|++.+++.++..+ +|++|+++||+     +||+.++++
T Consensus         6 n~~~~~-l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-----grr~~l~~~   79 (417)
T d1pv7a_           6 NTNFWM-FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWI   79 (417)
T ss_dssp             SHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----TTCTHHHHH
T ss_pred             CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHH
Confidence            444444 555555555543 4455566678888999999999999999998766 89999999995     455555556


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccCccchHHHHHHHHHHHHHHHHHHHH
Q 008185          191 VFLQILSWGPLALFPVAAKALPNLMACVLLSNLGASITEVAKDALVAEYGQ--KNGIVGLQSYAFMAAASGGILGNLFGG  268 (574)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~~~~~~~~a~i~d~~~--~~~rg~~~s~~~~~~~~G~~igp~igg  268 (574)
                      .....++..+..............++.+.+.+.+.+...........+..+  .+++....+........|.++||.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_          80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            555555555444443211111111222332222211111111111111111  123344566667777889999999999


Q ss_pred             HhhccCChhHHHHHHHHHHHHHHHH-hhhcccccccccccchhcchhhhhhhhHHHHHHHHHHHHcchhhHHHHHHHHhH
Q 008185          269 YFLLKTPPTTMFLVFAVLLSLQLAI-SFSAREESLGLAQVSYQNVASKSIAQSIKKQFSDLIATIGEESISYPLTWLVAS  347 (574)
Q Consensus       269 ~l~~~~gwr~~f~i~ai~~~~~~~~-~~~lpEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~l~  347 (574)
                      .+.+. +|++.++..+....+..++ .+..+|++....+.++++..++.  .. +   ....+..+++..+.........
T Consensus       160 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~~~~~~~~~~~~~~~~~~  232 (417)
T d1pv7a_         160 IMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA--FS-L---KLALELFRQPKLWFLSLYVIGV  232 (417)
T ss_dssp             HHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCC--CC-H---HHHHHHTTSSHHHHHHHHHHHH
T ss_pred             ccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccc--cc-c---cccccccccccccchhhhhHHH
Confidence            88764 6777776666666555555 45666665443321111100000  00 0   0111112333322222221111


Q ss_pred             h---hhcccccccceeehccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHhhhh
Q 008185          348 V---AMVPVLSGSMFCYQTQCLNINPSVIGMSRVIGQSMLLSLTVFYDRYWKKVPLRKLVGAVQILYASSLLLDLILVRQ  424 (574)
Q Consensus       348 ~---~~~~~~~~~~~~~~~~~~g~s~~~~gl~~i~~~ig~lig~~l~~~l~~r~~~r~ll~~~~ll~~~~~l~~l~l~~~  424 (574)
                      .   .........+..+..+..+.+....+.......++..++..+.+++.||.++++.+..+.++.++..+.. ..   
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~-~~---  308 (417)
T d1pv7a_         233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS-SF---  308 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HT---
T ss_pred             HHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcc-cc---
Confidence            1   1111111111111122334445566677777888888888999999999999998887766665543321 11   


Q ss_pred             hhcccCcCcceEEeehhHHHHHHHHhhHHHHHHHHHhhcCCChhHHHHHHHH-HHHHhHHHHHHHHHHHHHHhhCcccCC
Q 008185          425 INLQFGVPNEVFVLCFAGLAETLAQFKLLPFSMLLARLCPQGCEGSLTSFSA-SALCLSSIASGFLGVGLASLTGITFGD  503 (574)
Q Consensus       425 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~p~~~l~~~~~p~~~~gt~~gl~~-~~~~lg~~lg~~i~g~l~~~~g~~~~~  503 (574)
                            .++.+..+....+..........+...+++|.+|++.||+++|+.. ....+|..++|.++|.+.+.+|+.   
T Consensus       309 ------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~---  379 (417)
T d1pv7a_         309 ------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ---  379 (417)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHH---
T ss_pred             ------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---
Confidence                  1122222222222222223334445678899999999999999864 556799999999999999988753   


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHh
Q 008185          504 YSSLPVGIVIQFLAALLPLIWIHNVPMSETIIEKGRK  540 (574)
Q Consensus       504 ~~~l~~~~li~~~~~ll~l~~~~~vp~~~~~~~~~~~  540 (574)
                          ....+...+..+..++.++.++++++.++++||
T Consensus       380 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~  412 (417)
T d1pv7a_         380 ----GAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ  412 (417)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHSCCSSCTTHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHhhcCCCccchhHhh
Confidence                122222223333344456677776666665544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=2.1e-10  Score=118.12  Aligned_cols=152  Identities=11%  Similarity=-0.049  Sum_probs=102.9

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccch--hHhHHHHHHHHHHHHhhcccCccchHHH
Q 008185          137 LNFHMAHNLSLHPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIP--YICIGVFLQILSWGPLALFPVAAKALPN  213 (574)
Q Consensus       137 ~~~~l~~~~~~s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~--~l~i~~~~~~~~~~~~~~~~~~~~~~~~  213 (574)
                      .+.++.+.++.+..+.++..++..+...+ .++.|+++||+   + |++.  .......+..++..........  +...
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  345 (447)
T d1pw4a_         272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV---F-RGNRGATGVFFMTLVTIATIVYWMNPAG--NPTV  345 (447)
T ss_dssp             HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---S-TTCHHHHHHHHHHHHHHHHHHTTSCCTT--CHHH
T ss_pred             hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc---c-ccccccccchhHHHHHHHHHHHHhcccc--cHHH
Confidence            44577788899999999988888776655 67889999985   2 2222  1222222222222222222221  1333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccchHHHHHHHHHH-HHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 008185          214 LMACVLLSNLGASITEVAKDALVAEYGQKNGIVGLQSYAFMAAAS-GGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLA  292 (574)
Q Consensus       214 l~~~~~l~~~g~~~~~~~~~a~i~d~~~~~~rg~~~s~~~~~~~~-G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~  292 (574)
                      .+++.++.+++.+........+..|..|++.||.++++.+....+ |.+++|++.|++.+..||+..|++.++..++..+
T Consensus       346 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  425 (447)
T d1pw4a_         346 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI  425 (447)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            444455555555555555677889999999999999988777665 6788999999999999999999998777766665


Q ss_pred             Hh
Q 008185          293 IS  294 (574)
Q Consensus       293 ~~  294 (574)
                      +.
T Consensus       426 ~~  427 (447)
T d1pw4a_         426 LL  427 (447)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.5e-10  Score=116.61  Aligned_cols=145  Identities=8%  Similarity=-0.023  Sum_probs=108.0

Q ss_pred             ChhHHHHHHHHhhhhhhh-hhhheeeccccccCCCccchhHhHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHHH
Q 008185          148 HPSTLQLVQNSGNLPMVA-KPLYGILSDALYIGGAHRIPYICIGVFLQILSWGPLALFPVAAKALPNLMACVLLSNLGAS  226 (574)
Q Consensus       148 s~~~~~l~~s~~~l~~~~-~pl~G~lsD~~~~~G~rRk~~l~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~g~~  226 (574)
                      +....+...+...+...+ .++.+++.||.     +|++.+.++.++..++..++...++    .+.+++..++.+++.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~g~~~~  327 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATS----ALEVVILKTLHMFEVP  327 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHTCCC----HHHHHHHHHHHHHHHH
T ss_pred             chhhhcccccccccccccchhhhhhhhccc-----ccccchhhhHHHHHHhhhccccccc----cchhhHHHHHHHHHHH
Confidence            334445555555554444 66789999985     5666676777777777776666643    3445666677777777


Q ss_pred             HHHHHHHHHHHhhhcccCccchHHHH-HHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHh-hhccccc
Q 008185          227 ITEVAKDALVAEYGQKNGIVGLQSYA-FMAAASGGILGNLFGGYFLLKTPPTTMFLVFAVLLSLQLAIS-FSAREES  301 (574)
Q Consensus       227 ~~~~~~~a~i~d~~~~~~rg~~~s~~-~~~~~~G~~igp~igg~l~~~~gwr~~f~i~ai~~~~~~~~~-~~lpEt~  301 (574)
                      ...+...+++.|..|+++|+..+++. .....+|..+||.++|++.+..||+++|++.+++.++..++. ++++++.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            77777888999999999999999875 455679999999999999999999999999988887777665 5566543