Citrus Sinensis ID: 008187

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
Protein Sequence
MELTTDLQSNKQNTTTTTTNSASAAAELQRQQQHHRHLHLPQQQFDGRSVPFISSISIQAGLSHGGGGGGSGGAVHVITSSSSTTASSSTTGSSSSSSLSSSSSLTLSSPSSTNPVPPTQHAVVDASLAIATRSSSTPAPNNQQNLNMTATASTSTTTAITTTTTTAPPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYEEGFPHTALLGFHHQQQQQQHHLMTADQIAEALPSESGGGDNNNSNENYMRKRFREDLFKDDHTNSSNDNGNNNDQSQGESGGGGEERRKQMQNKQQQQQVLPATPMWAVTPGPPSSGAGSTFWMVTGASGAAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTATTLQAPLHFVPRFNLPTGNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESNLGMLAALNAVYSRAGGLNMNMNMTAEQNNPMEHHHHHQHHQQQQPQGSDSGGGDEDPNNSQ
Secondary Structure (PSIPRED)
ccccHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccEEcccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHcccccccccccccHHHHHHHHcccccccEEEEccccccccccccEEEEEEEcccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHEcccccccccEEEEEEEEEccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHcccccccccccHHHEccccccccccccEEEEEEccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
melttdlqsnkqnttttttNSASAAAELQRQQQHhrhlhlpqqqfdgrsvpfiSSISIQaglshggggggsgGAVHVITssssttasssttgsssssslsssssltlsspsstnpvpptqhavVDASLAIAtrssstpapnnqqnlnmtataststttaittttttapppvkrstkdrhtkvdgrgrrirmpATCAARVFQLTRelghksdgETIEWLLQQAEPAiiaatgtgtipanfsTLNVSLrssgstlsappsksaphsFHGALALAAAAQhhnhhhphhphpqyeegfphtallgfhhqQQQQQHHLMTADQIAealpsesgggdnnnsnenYMRKRFRedlfkddhtnssndngnnndqsqgesggggeERRKQMQNKQQQqqvlpatpmwavtpgppssgagstfwmvtgasgaaagagpseqqpqpqpqiwpfqhpvaaatpstattlqaplhfvprfnlptgnlefqtgraanplqlGSMLmhqhqhqqqpsqqlglgmnesNLGMLAALNAVYSragglnmnmnmtaeqnnpmehhhhhqhhqqqqpqgsdsgggdedpnnsq
Flexible Loop (DISEMBL)
melttdlqsnkqnttttTTNSASAAAELQRQQQHHRHLHLPQQQFDGRSVPFISSISIQAGLSHGGGGGGSGGAVHVITSSSSttasssttgsssssslsssSSLTLSSPSSTNPVPPTQHAVVDASLAIATRSsstpapnnqqnlnMTATaststttaittttttapppvkrstkdrhtkvdgrgrrirmpatCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYEEGFPHTALLGFHHQQQQQQHHLMTADQIAEAlpsesgggdnnnsNENYMRKRFREDLFKDDHtnssndngnnndqsqGESGGGGEERRKQMQNKQQQQQVLPATPMWAVTPGPPSSGAGSTFWMVTGASGAAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTATTLQAPLHFVPRFNLPTGNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESNLGMLAALNAVYSRAGGLNMNMNMTAEQNNPMEHHHHHQHHQqqqpqgsdsggGDEDPNNSQ
Low Complexity Region (SEG)
MELTTDLQSNKQnttttttnsasaaaElqrqqqhhrhlhlpqqqFDGRSVPFISSISIQaglshggggggsggavhvItssssttasssttgsssssslsssssltlsspsstNPVPPTQHAVVDASLAIATRSSSTPAPNNQQNLNMtataststttaittttttaPPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGalalaaaaqhhnhhhphhphpqYEEGFPHTALLGFhhqqqqqqhhLMTADQIAEALPsesgggdnnnsnenYMRKRFREDLFKDDHTnssndngnnndqsqgesggggeERRkqmqnkqqqqqVLPATPMWAVTPGPPSSGAGSTFWMVTgasgaaagagpseqqpqpqpqIWPFQHPVaaatpstattLQAPLHFVPRFNLPTGNLEFQTGRAANPlqlgsmlmhqhqhqqqpsqqlglgmNESNLGMLAALNAVYSRAGGLNMNMNMTAEQNNPMEhhhhhqhhqqqqPQGSDSGGGDEDPNNSQ
Disordered region (IsUnstruct)
*********************************************************************************************************************************************************************************************RMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLN*******************************************************LL****************************************************************************************************************FWMV***********************WPFQHPVAAAT**TATTLQAPLHFVPRFNLPTGNLEFQ************************************LGMLAALNAVYSR************************************************
Disordered Region (DISOPRED)
********************************************************************************************************************************************************************************************IRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANF************************************************************************************************************************************************************************GAGSTFWMVTG******************************************LHFVPRFNLPT******************************************LGMLAALNAV***************************************************
Disordered Region (DISEMBL)
***************************************LPQQQFDGRSVPFISSISIQAGLSHGGGGGGSGGAVHVITS*************************************PTQHAVVDASLAIATRSSSTPAPNNQQNLNMTATASTSTTTAI***********************GRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVS******************SFHGALALAA****************YEEGFPHTALLGF************TADQIAEALPSESGGGDNNNSNENYMRKRFREDLFKDDHTNSSNDNGN*****************************LPATPMWAVTPGPPSSGAGSTFWMVTGAS***************QPQIWPFQHPVAAATPSTATTLQAPLHFVPRFNLPTGNLEFQTGRAANPLQLGSML************QLGLGMNESNLGMLAALNAVYSRAGGLNMNMNMTAEQNN********************************
Disordered Region (DISPRO)
***********************************R***LPQQQFDGRSVPFISSISIQAGLSHG******************************************************************************************************************T*VDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRS********************LALAAAAQH****************************************************************************************************************QVLPATPMWAVTPGPPSSGAGSTFWMVTGA*****************PQIWPFQHPVAAATPSTATTLQAPLHFVPRFNLPTGNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESNLGMLAALNAVYSRAGGLN*******************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELTTDLQSNKQNTTTTTTNSASAAAELQRQQQHHRHLHLPQQQFDGRSVPFISSISIQAGLSHGGGGGGSGGAVHVITSSSSTTASSSTTGSSSSSSLSSSSSLTLSSPSSTNPVPPTQHAVVDASLAIATRSSSTPAPNNQQNLNMTATASTSTTTAITTTTTTAPPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYEEGFPHTALLGFHHQQQQQQHHLMTADQIAEALPSESGGGDNNNSNENYMRKRFREDLFKDDHTNSSNDNGNNNDQSQGESGGGGEERRKQMQNKQQQQQVLPATPMWAVTPGPPSSGAGSTFWMVTGASGAAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTATTLQAPLHFVPRFNLPTGNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESNLGMLAALNAVYSRAGGLNMNMNMTAEQNNPMEHHHHHQHHQQQQPQGSDSGGGDEDPNNSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	574	2.2.26 [Sep-21-2011]
Q9C518	401	Transcription factor TCP8	yes	no	0.506	0.725	0.489	9e-68
Q9LQF0	341	Transcription factor TCP2	no	no	0.419	0.706	0.442	3e-51
Q9C7G4	375	Transcription factor TCP2	no	no	0.534	0.818	0.383	7e-48
Q53PH2	448	Transcription factor PCF3	no	no	0.452	0.580	0.403	3e-44
Q93Z00	489	Transcription factor TCP1	no	no	0.263	0.308	0.519	1e-37
Q9C9L2	325	Transcription factor TCP1	no	no	0.188	0.332	0.728	2e-36
O64647	356	Transcription factor TCP9	no	no	0.137	0.221	0.8	2e-32
Q9FMX2	250	Transcription factor TCP7	no	no	0.125	0.288	0.847	6e-31
Q6ZBH6	373	Transcription factor PCF2	no	no	0.134	0.206	0.775	6e-30
A2YXQ1	373	Transcription factor PCF2	N/A	no	0.134	0.206	0.775	6e-30

>sp|Q9C518|TCP8_ARATH Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1

 Score =  258 bits (659), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 183/374 (48%), Positives = 212/374 (56%), Gaps = 83/374 (22%)

Query: 172 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 231
           KRSTKDRHTKVDGRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEPAI+AATG
Sbjct: 57  KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATG 116

Query: 232 TGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYE 291
           TGTIPANFSTL+VSLRSSGSTLSAPPSKS P   +GAL L     HH          QY+
Sbjct: 117 TGTIPANFSTLSVSLRSSGSTLSAPPSKSVP--LYGALGLT----HH----------QYD 160

Query: 292 E------GFPHTA-LLGFHHQQQQQQHHLMTADQIAEALPSESGGGDNNNSNENYMRKRF 344
           E         HT+ LLGFHHQ Q  Q+     D + E +P            EN+ RKR+
Sbjct: 161 EQGGGGVFAAHTSPLLGFHHQLQHHQNQNQNQDPV-ETIP----------EGENFSRKRY 209

Query: 345 RE-DLFKDDHTNSSNDNGNNNDQSQGESGGGGEERRKQMQNKQQQQQVLP---ATPMWAV 400
           R  DL K+      ND+                  RKQ +NK  ++       A PMWAV
Sbjct: 210 RSVDLSKE------NDD------------------RKQNENKSLKESETSGPTAAPMWAV 245

Query: 401 TPGPPSSGAGSTFWMV----TGASGAAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTATT 456
            P P  SGAG+TFWM+    T  +   + +  +       P +WPF   V +A       
Sbjct: 246 AP-PSRSGAGNTFWMLPVPTTAGNQMESSSNNNTAAGHRAPPMWPF---VNSAGGGAGGG 301

Query: 457 LQAPLHFVP--RFNLPTGNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESNL 514
             A  HF+    F+ P            +PLQLGS L      Q QP+Q LGL M +SNL
Sbjct: 302 GGAATHFMAGTGFSFPMDQYR------GSPLQLGSFLA-----QPQPTQNLGLSMPDSNL 350

Query: 515 GMLAALNAVYSRAG 528
           GMLAALN+ YSR G
Sbjct: 351 GMLAALNSAYSRGG 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQF0|TCP23_ARATH Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1

 Score =  203 bits (517), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 153/346 (44%), Positives = 176/346 (50%), Gaps = 105/346 (30%)

Query: 172 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 231
           KR +KDRH KVDGRGRRIRMPA CAARVFQLTREL HKSDGETIEWLLQQAEPAIIAATG
Sbjct: 52  KRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATG 111

Query: 232 TGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYE 291
           TGTIPAN STLN+SLRSSGSTLSAP SKS    FH    +  AAQ+              
Sbjct: 112 TGTIPANISTLNISLRSSGSTLSAPLSKS----FH----MGRAAQN-------------- 149

Query: 292 EGFPHTALLGFHHQQQQQQHHLMTADQIAEALPSESGGGDNNNSNENYMRKRFRE-DLFK 350
                 A+ GF  QQQ    H +T D  + +LP                 K FRE DLFK
Sbjct: 150 -----AAVFGF--QQQLYHPHHITTDSSSSSLP-----------------KTFREEDLFK 185

Query: 351 DDHTNSSNDNGNNNDQSQG-ESGGGGEERRKQM--QNKQQQQQVLPATPMWAVTPGPPSS 407
           D          N  DQ  G  S   G E   Q     + + Q ++P  PMWA+ P P S+
Sbjct: 186 DP---------NFLDQEPGSRSPKPGSEAPDQDPGSTRSRTQNMIP--PMWALAPTPAST 234

Query: 408 GAGSTFWMVTGASGAAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTATTLQAPLHFVPRF 467
             GS FWM+        G GP+  Q  P   +W F                 P H+    
Sbjct: 235 NGGSAFWMLP----VGGGGGPANVQ-DPSQHMWAFN----------------PGHY---- 269

Query: 468 NLPTGNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESN 513
                      GR  + +QLGSML+          QQLGLG+ E+N
Sbjct: 270 ----------PGRIGS-VQLGSMLVG--------GQQLGLGVAENN 296

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7G4|TCP22_ARATH Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1

 Score =  192 bits (487), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 156/407 (38%), Positives = 198/407 (48%), Gaps = 100/407 (24%)

Query: 171 VKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAAT 230
           VK+ TKDRHTKVDGRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEPAIIA+T
Sbjct: 59  VKKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAST 118

Query: 231 GTGTIPANFSTLNVSLRSSG-STLSAPPSKSAPHSFHGALALAAAAQHHN--HHHPHHPH 287
           GTGTIPANFSTLN SLRS G STL +  SKS+           +  + +N  +     P 
Sbjct: 119 GTGTIPANFSTLNASLRSGGGSTLFSQASKSSSSPLSFHSTGMSLYEDNNGTNGSSVDPS 178

Query: 288 PQYEEGFPHTALLGFHHQQQQQQHHLMTADQIAEALPSESGGGDNNNSNENYMRKRFRED 347
            +      + A+ GFHHQ       +M+ ++                 N N + K +RED
Sbjct: 179 RKLLNSAANAAVFGFHHQMYPP---IMSTER-----------------NPNTLVKPYRED 218

Query: 348 LFKDDHTNSSNDNGNNNDQSQGESGGGGEERRKQMQNKQQQQ-----QVLPATPMWAVTP 402
            FK+  + +                    ++  Q Q ++  Q      V+P  PMWAV P
Sbjct: 219 YFKEPSSAAEPSES--------------SQKASQFQEQELAQGRGTANVVP-QPMWAVAP 263

Query: 403 GPPSSGAGSTFWMVTGASGAAAGAGPSEQ-QPQPQPQIWPFQHPVAAATPSTATTLQAPL 461
           G  ++  GS FWM+       +G+G  EQ Q QP  Q+W F                   
Sbjct: 264 G--TTNGGSAFWML-----PMSGSGGREQMQQQPGHQMWAFN------------------ 298

Query: 462 HFVPRFNLPTGNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESNLGMLAALN 521
                     GN    TGR      +GSM++          QQLGLG+ E N  M AA+ 
Sbjct: 299 ---------PGNYPVGTGRVVTA-PMGSMMLG--------GQQLGLGVAEGN--MAAAMR 338

Query: 522 AVYSRAGGLNMNMNMTAEQNNPMEHHHHHQHHQQQQPQGSDSGGGDE 568
              SR  GL M ++    Q    E +         Q Q S++GG D+
Sbjct: 339 G--SRGDGLAMTLDQHQHQLQHQEPN---------QSQASENGGDDK 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q53PH2|PCF3_ORYSJ Transcription factor PCF3 OS=Oryza sativa subsp. japonica GN=PCF3 PE=2 SV=1

 Score =  180 bits (457), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 138/342 (40%), Positives = 167/342 (48%), Gaps = 82/342 (23%)

Query: 173 RSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGT 232
           R TKDRHTKV+GRGRRIRMPA CAARVFQLTRELGHK+DGETIEWLLQQAEPAI+AATGT
Sbjct: 150 RPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGT 209

Query: 233 GTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYEE 292
           GTIPANFS+L VSLRS+ S  S+P  ++AP              HH      H       
Sbjct: 210 GTIPANFSSLAVSLRSAASHSSSP--RAAPF-------------HHLQQQQQHDV----- 249

Query: 293 GFPHTALLGFHHQQQQQQHHLMTADQIAEALPSESGGGDNNNSNENYMRKRFRE--DLFK 350
                A+LGFHH   Q         Q  E  P + G G+       +MRKR+RE  DLFK
Sbjct: 250 ----AAMLGFHHHHHQLLPP-PPPHQHPEPTPQDPGAGE-------FMRKRYREADDLFK 297

Query: 351 DDHTNSSNDNGNNNDQSQGESGGGGEERRKQMQNKQQQQQVLPATPMWAVTPGPPSSGAG 410
           D       D              G  E++ +             + MWAV  GP ++GA 
Sbjct: 298 DTSRQDPVDGAT-----------GEAEQKARAAAAAAAPPPTAPSAMWAV--GPNTTGAT 344

Query: 411 STFWMVTGASGAAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTATTLQAPLHFVPRFNLP 470
           + FWM                    QP  W F H   A   +   T+QAPL F+ R + P
Sbjct: 345 AAFWM--------------------QP-AWAFPH--GAGAGAAGNTVQAPLQFMSRSSFP 381

Query: 471 TG-NLEFQTGRAANPLQLGSMLM-----------HQHQHQQQ 500
           T  N+       ++   LG +             HQHQH+ Q
Sbjct: 382 TAMNVTMADNNNSSNNNLGMLAALNAGGGGRSGEHQHQHEGQ 423

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93Z00|TCP14_ARATH Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1

 Score =  158 bits (399), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 109/179 (60%), Gaps = 28/179 (15%)

Query: 169 PPVKRS-TKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 227
           PP+KR+ TKDRHTKVDGRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEP++I
Sbjct: 110 PPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVI 169

Query: 228 AATGTGTIPANFSTLNVS-------------LRSSGSTLSAPPSKSAPHSFHGALAL--- 271
           AATGTGTIPANF++LN+S              RS+ ST S P +  +P            
Sbjct: 170 AATGTGTIPANFTSLNISLRSSGSSMSLPSHFRSAASTFS-PNNIFSPAMLQQQQQQQRG 228

Query: 272 AAAAQHHNHHHPHHP----HPQYEEGFPHTALLGFHHQQQQQQHHLMTADQIAEALPSE 326
                HH H     P     P  +   P T+ L FH+  +Q+       DQ +E L SE
Sbjct: 229 GGVGFHHPHLQGRAPTSSLFPGIDNFTPTTSFLNFHNPTKQE------GDQDSEELNSE 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9L2|TCP15_ARATH Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1

 Score =  154 bits (388), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/114 (72%), Positives = 96/114 (84%), Gaps = 6/114 (5%)

Query: 159 AITTTTT------TAPPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDG 212
           AI +TT+        PPP + STKDRHTKV+GRGRRIRMPA CAARVFQLTRELGHKSDG
Sbjct: 30  AIISTTSEPNSEPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDG 89

Query: 213 ETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFH 266
           ETIEWLLQQAEPA+IAATGTGTIPANF++LN+SLRSS S+LSA   ++ P S++
Sbjct: 90  ETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSRSSLSAAHLRTTPSSYY 143

Arabidopsis thaliana (taxid: 3702)

>sp|O64647|TCP9_ARATH Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 73/80 (91%), Gaps = 1/80 (1%)

Query: 169 PPVKR-STKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 227
           PP+KR STKDRHTKV+GRGRRIRMPATCAAR+FQLTRELGHKSDGETI WLL+ AEPAII
Sbjct: 68  PPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAII 127

Query: 228 AATGTGTIPANFSTLNVSLR 247
           AATGTGT+PA   ++N +L+
Sbjct: 128 AATGTGTVPAIAMSVNGTLK 147

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMX2|TCP7_ARATH Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1

 Score =  136 bits (342), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/72 (84%), Positives = 68/72 (94%)

Query: 176 KDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTI 235
           KDRH+KVDGRGRRIRMP  CAARVFQLTRELGHKSDG+TIEWLL+QAEP+IIAATGTGT 
Sbjct: 40  KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTT 99

Query: 236 PANFSTLNVSLR 247
           PA+FST +VS+R
Sbjct: 100 PASFSTASVSIR 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZBH6|PCF2_ORYSJ Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1

 Score =  132 bits (333), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 69/80 (86%), Gaps = 3/80 (3%)

Query: 168 PPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 227
           PPP  R   DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+EPAII
Sbjct: 71  PPPRNR---DRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAII 127

Query: 228 AATGTGTIPANFSTLNVSLR 247
           AATGTGT+PA  +T++  LR
Sbjct: 128 AATGTGTVPAIATTVDGVLR 147

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YXQ1|PCF2_ORYSI Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=4 SV=1

 Score =  132 bits (333), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 69/80 (86%), Gaps = 3/80 (3%)

Query: 168 PPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 227
           PPP  R   DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+EPAII
Sbjct: 71  PPPRNR---DRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAII 127

Query: 228 AATGTGTIPANFSTLNVSLR 247
           AATGTGT+PA  +T++  LR
Sbjct: 128 AATGTGTVPAIATTVDGVLR 147

Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	574
147770652	550	hypothetical protein VITISV_033383 [Viti	0.696	0.727	0.595	1e-124
359486261	538	PREDICTED: LOW QUALITY PROTEIN: transcri	0.689	0.736	0.606	1e-123
255576233	546	transcription factor, putative [Ricinus	0.897	0.943	0.520	1e-115
224129360	567	predicted protein [Populus trichocarpa]	0.815	0.825	0.554	1e-112
350540658	523	TCP transcription factor 11 [Solanum lyc	0.691	0.759	0.532	1e-100
356560809	361	PREDICTED: transcription factor TCP8-lik	0.526	0.836	0.605	4e-99
357445371	487	TCP family transcription factor-like pro	0.780	0.919	0.460	9e-94
302399071	388	TCP domain class transcription factor [M	0.543	0.804	0.585	1e-90
449435480	505	PREDICTED: transcription factor TCP8-lik	0.646	0.734	0.536	2e-89
356541872	420	PREDICTED: transcription factor TCP8-lik	0.555	0.759	0.565	2e-88

>gi|147770652|emb|CAN64544.1| hypothetical protein VITISV_033383 [Vitis vinifera]

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 286/480 (59%), Positives = 321/480 (66%), Gaps = 80/480 (16%)

Query: 123 VVDASLAIATRSSST-------PAPNNQQNLNMTATASTSTTTAITTTTTTAPPPVKRST 175
           +VDASLAIATRS +           + ++N              +T  T    PP KRST
Sbjct: 123 LVDASLAIATRSEADRSRSGGGVVDSTKKNQQQQQQQQQQQQQQLTIGTN---PPAKRST 179

Query: 176 KDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTI 235
           KDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTI
Sbjct: 180 KDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTI 239

Query: 236 PANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYEEGFP 295
           PANFSTLNVSLRSSGST+SAPPSKSAPHSFHGALALA        HHPH     YEEGFP
Sbjct: 240 PANFSTLNVSLRSSGSTISAPPSKSAPHSFHGALALA--------HHPH-----YEEGFP 286

Query: 296 HTALLGFHHQQQQQQHHLMTADQIAEALP-SESGGGDNNNSNENYMRKRFREDLFKDDHT 354
           HTA+LGFH     QQ HL++ADQI +ALP     G     S+ENYMRKRFR DLFKD+ +
Sbjct: 287 HTAMLGFH-----QQPHLLSADQIGDALPGGGGAGSGGGGSDENYMRKRFRGDLFKDEDS 341

Query: 355 NSSNDNGNNNDQSQGESGGGGEERRKQMQNKQQQQQ------------VLPATPMWAVTP 402
           N + +  N    S+  SG G  +       K  Q+Q            +LPAT MWAV P
Sbjct: 342 NQALE--NTTTASEAASGNGNNKTTSLHMGKSPQEQQPGPSGLLRPSNILPATAMWAVAP 399

Query: 403 GPPSSGAGSTFWMV---TGASG-----AAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTA 454
             P+SGAGSTFWM+   TGA G      A+GAGPSE      P +W    P AA T +T 
Sbjct: 400 S-PNSGAGSTFWMLPVTTGAGGPSAAVGASGAGPSE------PHMWAL--PTAAPT-ATG 449

Query: 455 TTLQAPLHFVPRFNLPTGNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESNL 514
            TLQAPLHF+PRFNL + NL+FQ GR ANPLQLGSMLM QH     PSQ LGLG++E+NL
Sbjct: 450 NTLQAPLHFMPRFNLAS-NLDFQGGR-ANPLQLGSMLMQQH-----PSQHLGLGVSETNL 502

Query: 515 GMLAALNAVYSRAGGLNMNMNMTAEQNNPMEHHHHHQHHQQQQPQGSDSGGGDEDPNNSQ 574
           GMLAALNA YSR GGLNMN    +EQN+PME    H      QPQG+DS  GDEDPN+SQ
Sbjct: 503 GMLAALNA-YSR-GGLNMN----SEQNHPME----HHQQHPHQPQGTDS--GDEDPNSSQ 550

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486261|ref|XP_002264112.2| PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP8-like [Vitis vinifera]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 287/473 (60%), Positives = 322/473 (68%), Gaps = 77/473 (16%)

Query: 123 VVDASLAIATRSSSTPAPNNQQNLNMTATASTSTTTAITTTTTTAPPPVKRSTKDRHTKV 182
           +VDASLAIATRS +  + +           +T+TTT          PP KRSTKDRHTKV
Sbjct: 122 LVDASLAIATRSEADRSRSG-------GATATATTTTAAAADNWDEPPAKRSTKDRHTKV 174

Query: 183 DGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTL 242
           DGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTL
Sbjct: 175 DGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTL 234

Query: 243 NVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYEEGFPHTALLGF 302
           NVSLRSSGST+SAPPSKSAPHSFHGALALA        HHPH     YEEGFPHTA+LGF
Sbjct: 235 NVSLRSSGSTISAPPSKSAPHSFHGALALA--------HHPH-----YEEGFPHTAMLGF 281

Query: 303 HHQQQQQQHHLMTADQIAEALP-SESGGGDNNNSNENYMRKRFREDLFKDDHTNSSNDNG 361
           H     QQ HL++ADQI +ALP     G     S+ENYMRKRFR DLFKD+ +N + +  
Sbjct: 282 H-----QQPHLLSADQIGDALPGGGGAGSGGGGSDENYMRKRFRGDLFKDEDSNQALE-- 334

Query: 362 NNNDQSQGESGGGGEERRKQMQNKQQQQQ------------VLPATPMWAVTPGPPSSGA 409
           N    S+  SG G  +       K  Q+Q            +LPAT MWAV P  P+SGA
Sbjct: 335 NTTTASEAASGNGNNKTTSLHMGKSPQEQQPGPSGLLRPSNILPATAMWAVAPA-PNSGA 393

Query: 410 GSTFWMV---TGASG-----AAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTATTLQAPL 461
           GSTFWM+   TGA G      A+GAGPSE      P +W    P AA T +T  TLQAPL
Sbjct: 394 GSTFWMLPVTTGAGGPSAAVGASGAGPSE------PHMWAL--PTAAPT-TTGNTLQAPL 444

Query: 462 HFVPRFNLPTGNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESNLGMLAALN 521
           HF+PRFNL + NL+FQ GR ANPLQLGSMLM QH     PSQ LGLG++E+NLGMLAALN
Sbjct: 445 HFMPRFNLAS-NLDFQGGR-ANPLQLGSMLMQQH-----PSQHLGLGVSETNLGMLAALN 497

Query: 522 AVYSRAGGLNMNMNMTAEQNNPMEHHHHHQHHQQQQPQGSDSGGGDEDPNNSQ 574
           A YSR GGLNMN    +EQN+PME    H      QPQG+DS  GDEDPN+SQ
Sbjct: 498 A-YSR-GGLNMN----SEQNHPME----HHQQHPHQPQGTDS--GDEDPNSSQ 538

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576233|ref|XP_002529010.1| transcription factor, putative [Ricinus communis] gi|223531550|gb|EEF33380.1| transcription factor, putative [Ricinus communis]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 315/605 (52%), Positives = 366/605 (60%), Gaps = 90/605 (14%)

Query: 1   MELTTDLQSNKQNTTTTTTNSASAAAELQRQQQHHRHLHLPQQQFDGRSVP-----FISS 55
           MELT D+Q+ KQN T++         +      HH  +      FDGR  P     F+ S
Sbjct: 1   MELT-DMQNKKQNNTSSNQEPHHQQQQHHHHHHHHHQV-----AFDGRGPPSQGGPFMGS 54

Query: 56  ISIQAGLSHGGGGGGSGGAVHVITSSSSTTASSSTTGSSSSSSLSSSSSLTLSSPSSTNP 115
           ISIQAGLS                   +  +S+ TT ++ S+  +S SS T S+ +ST+ 
Sbjct: 55  ISIQAGLSRTSNPLHHHQQQQQQQQQHNLASSTPTTATTGSTPSTSLSSSTSSTSASTSS 114

Query: 116 VPPTQHAVVDASLAIATRSSSTPAPNNQQNLNMTATASTSTTTAITTTTTTAPPPVKRST 175
            P T H +VDASLAIATRS  +        L++  + +T+TT      T       KRST
Sbjct: 115 APTTPH-LVDASLAIATRSGPS--------LSIVTSTATTTTATAAAATPA-----KRST 160

Query: 176 KDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTI 235
           KDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLL+QAEPAIIAATGTGTI
Sbjct: 161 KDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLRQAEPAIIAATGTGTI 220

Query: 236 PANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYEEGFP 295
           PANFSTLNVSLRSSG TLSAPPSKSAPHSFHGALALA A     HHH H+     +EGF 
Sbjct: 221 PANFSTLNVSLRSSGCTLSAPPSKSAPHSFHGALALAQA-----HHHSHYD----QEGFA 271

Query: 296 HTALLGFHHQQQQQQHHLMTADQIAEALP----SESGGGDNNNSNENYMRKRFREDLFKD 351
           HT +LGFHH Q     HL+TADQIAEALP       GGG + +S+ENY RKR+REDLFK+
Sbjct: 272 HTGMLGFHHHQ-----HLLTADQIAEALPSGGGESGGGGGDGDSSENYARKRYREDLFKE 326

Query: 352 DHTNSSNDNGNNNDQSQGESGGGGEERRKQMQNKQQQQ----------QVLPATPMWAVT 401
                S   G       G S   G +   Q+   QQQ+           +LPAT MWAV 
Sbjct: 327 HSQQESGGGGGGGGGGGGGSPNKGFKTGLQLPKGQQQETGSTGLLRPSNMLPATAMWAVA 386

Query: 402 PGPPSSGAGSTFWMVTGASGAAAG------------AGPSEQQPQPQPQIWPFQHPVAAA 449
           P P S  AGSTFWM+   +G   G            AGPSE    P PQ+WPF      A
Sbjct: 387 PAPTSGTAGSTFWMLPVTAGGGGGPAMVATPAASGPAGPSE----PVPQMWPFST-ATPA 441

Query: 450 TPSTATTLQAPLHFVPRFNLPTGNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGM 509
             ++  TLQAPLHFVPRFNLP  NL+F  GR  N LQLGSMLM     QQQPSQ LGL M
Sbjct: 442 AAASGNTLQAPLHFVPRFNLPA-NLDFGGGR-GNALQLGSMLM-----QQQPSQHLGLSM 494

Query: 510 NESNLGMLAALNAVYSRAGGLNMNMNMTAEQNNPMEHHHHHQHHQQQQPQGSDSGGGDED 569
           +E+NLGMLAALNA YSR GGLNMN    ++QNNP+E          Q  Q   +  GDED
Sbjct: 495 SETNLGMLAALNA-YSR-GGLNMN----SDQNNPLE-------QHHQHQQPQTTNSGDED 541

Query: 570 PNNSQ 574
           PN+SQ
Sbjct: 542 PNSSQ 546

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129360|ref|XP_002328698.1| predicted protein [Populus trichocarpa] gi|222838996|gb|EEE77347.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 314/566 (55%), Positives = 349/566 (61%), Gaps = 98/566 (17%)

Query: 51  PFISSISIQAGLSHGGGGGGSGGAVHVITSSSSTTASSSTTGSSSSSSLSSSSSLTLSSP 110
           PF+ SISIQAGL H    G S         S+ TTA++ +  S SSS LSSSSS T +S 
Sbjct: 58  PFMGSISIQAGLHHHHNLGAS---------STPTTANTGSVPSPSSSPLSSSSSSTSAST 108

Query: 111 SSTNPVPPTQHAVVDASLAIATR---SSSTPAPNNQQNLNMTATASTSTTTAITTTTTTA 167
           SST     T   +VDASLAIAT    S        QQNL++   A+ ST+ A T   T A
Sbjct: 109 SST-----TPPRLVDASLAIATSYDPSLVDSTKKKQQNLSIAPAATNSTSAATTAAVTPA 163

Query: 168 PPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 227
               KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAE  II
Sbjct: 164 ----KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAESTII 219

Query: 228 AATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPH 287
           AATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFH AL L+        HHPH   
Sbjct: 220 AATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHSALGLS--------HHPH--- 268

Query: 288 PQYEEGFPHTALLGFHHQQQQQQHHLMTADQIAEALPSESGGGD--------NNNSNENY 339
             YEEGF H A LGF  QQ QQQHHLMTADQIA+ALP    G D             ENY
Sbjct: 269 --YEEGFAHPAFLGF-QQQHQQQHHLMTADQIAQALPI---GADGGGGGGESRGGGEENY 322

Query: 340 MRKRFREDLFKDDHTNSSNDNGNNNDQSQGESGGGGEERRK---QMQNKQQQQ------- 389
           MRKRFREDLFK+D+     ++G               +  K   Q+   QQQ+       
Sbjct: 323 MRKRFREDLFKEDNPQEQGESGGGRGGGGDGGEEPPIKAFKSDLQLPKPQQQETGSSGLL 382

Query: 390 ---QVLPATPMWAVTPGPPSSGAGSTFWMVTGASGAAAGAGPSEQQPQPQPQIWPFQHPV 446
               +LP T MWA+ P PPSSGAG+TFWM+   +GA             +PQIWPF    
Sbjct: 383 RPSNILPTTAMWAMAPAPPSSGAGNTFWMLPMTAGAGG-----------EPQIWPF---- 427

Query: 447 AAATPSTATTLQAPLHFVPRFNLPTGNLEFQTGRAA-------NPLQLGSMLM------- 492
           A ATP++   LQAPLHFVPRFNLPT +LEFQ GR +       +PLQLGSMLM       
Sbjct: 428 ATATPASGNPLQAPLHFVPRFNLPTTSLEFQRGRGSPLQLGSMSPLQLGSMLMQQQHQQQ 487

Query: 493 ----HQHQHQQQPSQQLGLGMNESNLGMLAALNAVYSRAGGLNMNMNMTAEQNNPMEHHH 548
                Q   QQQPSQ LGLGM ESNLGMLAALNA YSR G LNMN    ++QNNP++HHH
Sbjct: 488 QQQQQQQHQQQQPSQYLGLGMPESNLGMLAALNA-YSR-GDLNMN----SQQNNPLDHHH 541

Query: 549 HHQHHQQQQPQGSDSGGGDEDPNNSQ 574
            H H             GDEDPN SQ
Sbjct: 542 QHHHQHHHHQTQGTPDSGDEDPNTSQ 567

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350540658|ref|NP_001234831.1| TCP transcription factor 11 [Solanum lycopersicum] gi|306416833|gb|ADM87260.1| TCP transcription factor 11 [Solanum lycopersicum]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 255/479 (53%), Positives = 301/479 (62%), Gaps = 82/479 (17%)

Query: 123 VVDASLAIATRSSSTPAPNNQQNLNMTATASTSTTTAITTTTTTAPPPVKRSTKDRHTKV 182
           +VDASLAIATRS +   PN +  L +  T                    KR TKDRHTKV
Sbjct: 100 LVDASLAIATRSDTLVDPNKKSQLAIQQTQPVQPQQPPP----------KRQTKDRHTKV 149

Query: 183 DGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTL 242
           DGRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTL
Sbjct: 150 DGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTL 209

Query: 243 NVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYEEGFPHTALLGF 302
           N+SLRSSGSTLSAPPSKSAPHSFH ALALAAA Q         PHP +EEGF  + +LGF
Sbjct: 210 NISLRSSGSTLSAPPSKSAPHSFHSALALAAAHQ--------TPHP-FEEGF--SQMLGF 258

Query: 303 HHQQQQQQHHLMTADQIAEALPSESGGGDNNNSN---------ENYMRKRFREDLFKDDH 353
           HH       HL+T + IAE++P   GGG ++            +NY+RKR+REDLFK++ 
Sbjct: 259 HHNT-----HLLTQNPIAESIPGGGGGGGSSGDGGGVGGQEGADNYLRKRYREDLFKEE- 312

Query: 354 TNSSNDNGNNNDQSQGESGGGGEERRKQMQNKQQQQQ--------------VLPATPMWA 399
             SSN  G  +  S   S    +    Q+ NK   Q+              V+PAT +WA
Sbjct: 313 -GSSNQQGEASGGSSSPSNKQFKGNSPQLPNKPNSQEGVAGPSSNMLRHTNVIPATGLWA 371

Query: 400 VTPGPPSSG--AGSTFWMVTGASG--AAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTAT 455
           V P PP+SG   GS FWM+   SG   +A    +      + Q+WPF  P+ ++      
Sbjct: 372 VAP-PPTSGTTGGSPFWMLPVTSGQTLSAPMASTSGTTTLESQMWPF--PMGSS------ 422

Query: 456 TLQAPLHFVPRFNLPTGNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESNLG 515
               PLHF+PRFN+P  NLEFQ+GR  NPLQLGSMLM     QQQPSQ LGLGM E+NLG
Sbjct: 423 --NTPLHFMPRFNIPP-NLEFQSGR-GNPLQLGSMLM----QQQQPSQHLGLGMAETNLG 474

Query: 516 MLAALNAVYSRAGGLNMNMNMTAEQNNPMEHHHHHQHHQQQQPQGSDSGGGDEDPNNSQ 574
           MLAALNA YSR G   +NMN   +Q++ ++  HH Q  QQQQP  SD    ++DPNNSQ
Sbjct: 475 MLAALNA-YSRGG---LNMNSDHQQSHSLD--HHQQQQQQQQPTDSD----EDDPNNSQ 523

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560809|ref|XP_003548679.1| PREDICTED: transcription factor TCP8-like [Glycine max]

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 226/373 (60%), Positives = 250/373 (67%), Gaps = 71/373 (19%)

Query: 172 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 231
           KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG
Sbjct: 25  KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 84

Query: 232 TGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYE 291
           TGTIPANFS+LNVSLRSSGSTLSAPPSKSAPH+FHGALALA        HHP      YE
Sbjct: 85  TGTIPANFSSLNVSLRSSGSTLSAPPSKSAPHTFHGALALA--------HHP------YE 130

Query: 292 EGFPHTALLGFH-HQQQQQQHHLMTADQIAEALPSESGGGDNNNSNENYMRKRFREDLFK 350
           E F H ALLGFH H  Q QQ  L++AD I E+LP  SG GD   S +NY+RKR+REDLFK
Sbjct: 131 EAFQHPALLGFHPHAHQPQQ--LLSADHIPESLP--SGAGD---SGDNYLRKRYREDLFK 183

Query: 351 DDHTNSSNDNGNNNDQSQGESGGGGEERRKQMQNKQQQQ---------QVLPATPMWAVT 401
           DD+ N      NNN QSQ ESG G     K    KQQ +          +LPAT MWAV 
Sbjct: 184 DDNIN------NNNTQSQNESGDGDGSSPK--LPKQQSEAGSGLLRPSNLLPATAMWAVA 235

Query: 402 PGPPSSGAGSTFWMVTGASGAAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTATTLQAPL 461
           P P S   GST WM+   +GA++ A         + Q+WPF   V+              
Sbjct: 236 PSPASGPPGSTIWMLPVTAGASSSA-------SSETQMWPFPQSVSG------------- 275

Query: 462 HFVPRFNLPT-GNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESNLGMLAAL 520
            F+PRFNLP  G LEFQ  RA + LQLGSM M Q QH       LGL M++SNLGMLAAL
Sbjct: 276 -FMPRFNLPVPGALEFQGARAGS-LQLGSMSMPQQQH-------LGLAMSDSNLGMLAAL 326

Query: 521 NAVYSRAGGLNMN 533
           NA Y+RA  LN+N
Sbjct: 327 NA-YTRA-SLNVN 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445371|ref|XP_003592963.1| TCP family transcription factor-like protein [Medicago truncatula] gi|357445449|ref|XP_003593002.1| TCP family transcription factor-like protein [Medicago truncatula] gi|355482011|gb|AES63214.1| TCP family transcription factor-like protein [Medicago truncatula] gi|355482050|gb|AES63253.1| TCP family transcription factor-like protein [Medicago truncatula]

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 282/613 (46%), Positives = 333/613 (54%), Gaps = 165/613 (26%)

Query: 1   MELTTDLQSNKQNTTTTTTNSASAAAELQRQQQ--------HHRHLHLPQQQFDGRSVPF 52
           MEL+ DLQ+NKQ   TT  +          QQQ        HH+ L +P   FDGR  PF
Sbjct: 1   MELS-DLQNNKQKRGTTNIHP-------HHQQQESSSPSNSHHQQLVVP---FDGRPSPF 49

Query: 53  ISSISIQAGLSHGGGGGGSGGAVHVITSSSSTTASSSTTGSSSSSSLSSSSSLTLSSPSS 112
           I                   G++  I  SS+++ S+S++ S+S+S+ +S+          
Sbjct: 50  IM------------------GSISNIQPSSNSSPSNSSSSSASASASASAP--------- 82

Query: 113 TNPVPPTQHAVVDASLAIATRSSSTPAPNNQQNLNMTATASTSTTTAITTTTTTAPPPVK 172
                 TQH ++DASLAIATRS   P P+   N  +   +STSTT      T  A PP K
Sbjct: 83  ------TQH-LIDASLAIATRSEP-PLPDVSNN-QIQPFSSTSTTV-----TAVANPP-K 127

Query: 173 RSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGT 232
           RSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGT
Sbjct: 128 RSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGT 187

Query: 233 GTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYEE 292
           GTIPANFSTLNVSLRSSGSTLSAPPSKSAP SFH ALALA        HHP+      E 
Sbjct: 188 GTIPANFSTLNVSLRSSGSTLSAPPSKSAPLSFHSALALA--------HHPYE-----EA 234

Query: 293 GFPHTALLGFHHQQQQQQHHLMTADQIAEALPSESGGGDNNNSNENYMRKRFREDLFKDD 352
            + H  LLGF H  Q  Q  LM ADQI EAL           SNENYMRKR+REDLFK+D
Sbjct: 235 AYQHAPLLGF-HPHQHHQQQLMNADQIGEAL-----------SNENYMRKRYREDLFKED 282

Query: 353 HTNSSNDNGNNNDQSQGESGGGGEERRKQMQNKQQQQQ---------------------- 390
                     NN+Q++    G G    K  +   QQQ                       
Sbjct: 283 ----------NNNQNESGGDGDGSSSPKSFKTNHQQQDDMGEGDGGGGGASSSSSIGNSF 332

Query: 391 --------VLPATPMWAVTPGPPSSGAGSTFWMVTGASGAAAGAGPSEQQPQPQPQIWPF 442
                   +LPAT MWA      ++G+GST WMV  + GAA     SE Q Q    +WPF
Sbjct: 333 SGLLRPSNMLPATAMWA------TAGSGSTIWMVPVSGGAATSN--SETQTQ---NMWPF 381

Query: 443 QHPVAAATPSTATTLQAPLHFVPRFNLP-TGNLEFQTGRAANPLQLGSMLMHQHQHQQQP 501
              V +     A    + LHF+PRFN+P +G +EFQ GR             Q     QP
Sbjct: 382 NPHVQSQNQGNAAVTPSQLHFMPRFNVPASGGVEFQGGRGGL----------QLGSAYQP 431

Query: 502 SQQLGLGMNESNLGMLAALNAVYSRAGGLNMNMNMTAEQNNPMEHHHHHQHHQQQQPQGS 561
           SQ LGL +++SN+GM AALNA Y+RA   N+        NN  +HH       QQQPQ +
Sbjct: 432 SQHLGLAVSDSNMGMFAALNA-YNRAAHFNV--------NNSSDHH-------QQQPQPN 475

Query: 562 DSGGGDEDPNNSQ 574
           D  G D  PN SQ
Sbjct: 476 DESGEDA-PNTSQ 487

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399071|gb|ADL36830.1| TCP domain class transcription factor [Malus x domestica]

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 223/381 (58%), Positives = 254/381 (66%), Gaps = 69/381 (18%)

Query: 191 MPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSG 250
           MPATCAARVFQLTRELGHKSDGETIEWLLQQAE AIIA TGTGTIPANFSTLN+SLRSSG
Sbjct: 1   MPATCAARVFQLTRELGHKSDGETIEWLLQQAEHAIIATTGTGTIPANFSTLNISLRSSG 60

Query: 251 STLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYEEGFPHTALLGFHHQQQQQQ 310
           STLSAPPSKSAPHSF GALALA        HHPH     Y+EGF H+ LLGFH Q QQQQ
Sbjct: 61  STLSAPPSKSAPHSFPGALALA--------HHPH-----YDEGFAHSGLLGFHQQHQQQQ 107

Query: 311 HH----------LMTADQIAEALP---SESGGGDNNNSNENYMRKRFREDLFKDDH---- 353
           H           LMTADQIAEALP    +S GG    S ENYMRKRFREDLFKDD+    
Sbjct: 108 HQQHHHQPHQSPLMTADQIAEALPSGGGDSAGGGGGESTENYMRKRFREDLFKDDNQGQG 167

Query: 354 ---TNSSNDNGNNNDQSQGESGGGGEERRKQMQNKQ-------QQQQVLPATPMWAVTPG 403
              +     + + N   +G S GG +  ++Q Q  +       +   +LPAT MWAV P 
Sbjct: 168 ESGSGDGGGSPSRNKAFKGASSGGLQLPKQQQQGAEVGSSGVLRPSSILPATAMWAVAPA 227

Query: 404 PPSSGAGSTFWMVTGASG--------AAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTAT 455
            P+SG G+TFWM+   +G        A  GAGPSE       Q+W F     ++T S  +
Sbjct: 228 -PTSGTGNTFWMLPVTAGPGVPSMATATFGAGPSEAA-----QMWTF----PSSTASHGS 277

Query: 456 TLQAPLHFVPRFNLPTGNLEFQ---TGRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNES 512
           TLQAP+HF+PRFNLP+ +LEFQ    G   +PLQLGSMLM     QQ PSQ LGLG+++S
Sbjct: 278 TLQAPMHFMPRFNLPS-SLEFQQAAAGGRGSPLQLGSMLM-----QQPPSQHLGLGVSDS 331

Query: 513 NLGMLAALNAVYSRAGGLNMN 533
           NLGMLAALNA YSR GGLNMN
Sbjct: 332 NLGMLAALNA-YSR-GGLNMN 350

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435480|ref|XP_004135523.1| PREDICTED: transcription factor TCP8-like [Cucumis sativus]

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 235/438 (53%), Positives = 268/438 (61%), Gaps = 67/438 (15%)

Query: 124 VDASLAIATRSSSTPAPNNQQNLNMTATASTSTTTAITTTTTTAPPPVKRSTKDRHTKVD 183
           +DASL IATRS +T A +           STST  A            KRSTKDRHTKV+
Sbjct: 67  LDASLVIATRSDTTAAADPSPR-------STSTANAAN----------KRSTKDRHTKVE 109

Query: 184 GRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLN 243
           GRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFS+LN
Sbjct: 110 GRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLN 169

Query: 244 VSLRSSGSTLSAPPSKSAPHSFHG-ALALAAAAQHHNHHHPHHPHPQYEEGFPHTALLGF 302
           +S+RSSGSTLSAPPSKSAPHSFHG ALALA        HHPH     YEEGF H ALLGF
Sbjct: 170 ISIRSSGSTLSAPPSKSAPHSFHGAALALA--------HHPH----AYEEGFAHAALLGF 217

Query: 303 HHQQQQQQH---HLMTADQIAEALPSESGGGDNNNSNENYMRKRFREDLFKDDHTNSSND 359
           HHQQQQQQ    +LMTADQI E LP  SGGG+   S +NYMRKRFREDLFK+D T S  +
Sbjct: 218 HHQQQQQQQHHLNLMTADQIGEGLP--SGGGE---STDNYMRKRFREDLFKED-TQSPGE 271

Query: 360 NGNNNDQSQGESGGGGEERRKQMQNKQQQQQVLPATPMWAVTPGPPSSGAGSTFWM--VT 417
           +       +        E+++Q  +      + P   MWAV    PSSGA +TFWM  VT
Sbjct: 272 SSGGGGSPKAMKTDLQLEKQQQQPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVT 331

Query: 418 GASGAAAGAGPSEQQPQPQP---------QIWPFQHPVAAATPSTATTLQAPLHFVPRFN 468
             SG       S                 Q+WPF         ++  TLQAPLH +PRFN
Sbjct: 332 AGSGGGNVGNSSGGGGGGGGGGDGGLEAHQMWPFS--------TSGNTLQAPLHLMPRFN 383

Query: 469 LPTGNLEFQT-GRAANPLQLGSMLMHQHQHQQQPSQQLGLGMNESNLGMLAALNAVYSRA 527
           +P G +E Q  G     LQLGSMLM Q          +    +E+NLGMLAALNA Y+  
Sbjct: 384 IP-GGVEIQAGGGGGGQLQLGSMLMQQAAGGGGGGLGV----SETNLGMLAALNAAYNSR 438

Query: 528 GGLNMNMNMTAEQNNPME 545
            G   N+N     N+P+E
Sbjct: 439 SGSGFNIN---SDNHPLE 453

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541872|ref|XP_003539396.1| PREDICTED: transcription factor TCP8-like [Glycine max]

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 211/373 (56%), Positives = 246/373 (65%), Gaps = 54/373 (14%)

Query: 172 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 231
           KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG
Sbjct: 60  KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 119

Query: 232 TGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAAAQHHNHHHPHHPHPQYE 291
           TGTIPANFSTLNVSLRSSGSTLSAPPSKSAPH+FHGALALA        HHP      Y+
Sbjct: 120 TGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHTFHGALALA--------HHP------YD 165

Query: 292 EGFPHTALLGFHHQQQQQQHHLMTADQIAEALPSESGGGDNNNSNENYMRKRFREDLFKD 351
           E F H ALLGFH    QQQ  L++ADQIAEALPS +GGGD   S  NY+RKR+REDLFKD
Sbjct: 166 EAFQHPALLGFHPHHHQQQ--LLSADQIAEALPS-AGGGD---SGGNYLRKRYREDLFKD 219

Query: 352 DHTNSSNDNGNNNDQSQGESGGGGEER--RKQMQNKQQQQQVLPATPMWAVTPGPPSSGA 409
           D+ N++    ++ D      G G   +  ++      +   +LPAT MWA   GPP    
Sbjct: 220 DNINNTQSQNDSGDADGDADGDGSSPKLPKEAGSGLLRPTNLLPATAMWAS--GPP---- 273

Query: 410 GSTFWMV---TGASGAAAGAGPSEQQPQPQPQIWPFQHPVAAATPSTATTLQAPLHFVPR 466
           GST WM+     A+ +++ +  +      + Q+W F   V+               F+PR
Sbjct: 274 GSTIWMLPVTAAAASSSSSSSSASSAASSESQMWAFPQSVSG--------------FMPR 319

Query: 467 FNLPT-GNLEFQTGRAANPLQLGSMLMHQHQHQQQPSQQ-----LGLGMNESNLGMLAAL 520
           FNLP  G LEFQ  RA + LQLG  ++          QQ     LGL M++SNLGMLAAL
Sbjct: 320 FNLPVPGALEFQGARAGS-LQLGPSMLMPPPPLPPQQQQQPSQHLGLAMSDSNLGMLAAL 378

Query: 521 NAVYSRAGGLNMN 533
           NA Y+RA GLN+N
Sbjct: 379 NA-YARA-GLNIN 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	574
TAIR|locus:2196220	401	TCP8 "AT1G58100" [Arabidopsis	0.158	0.226	0.956	1.1e-60
TAIR|locus:2014661	341	AT1G35560 "AT1G35560" [Arabido	0.158	0.266	0.901	6.7e-45
TAIR|locus:2030321	375	AT1G72010 "AT1G72010" [Arabido	0.252	0.386	0.598	1.4e-44
TAIR|locus:2205065	325	TCP15 "AT1G69690" [Arabidopsis	0.172	0.304	0.797	5.9e-42
TAIR|locus:2079202	489	TCP14 "AT3G47620" [Arabidopsis	0.229	0.269	0.634	7.8e-39
TAIR|locus:2043659	356	TCP9 "TCP domain protein 9" [A	0.146	0.235	0.764	1.3e-32
TAIR|locus:2166796	250	AT5G23280 "AT5G23280" [Arabido	0.144	0.332	0.759	1e-29
TAIR|locus:2092020	314	TCP20 "AT3G27010" [Arabidopsis	0.245	0.449	0.503	2.7e-29
TAIR|locus:2150803	239	TCP11 "AT5G08330" [Arabidopsis	0.141	0.338	0.780	1.2e-28
TAIR|locus:2166518	293	AT5G51910 "AT5G51910" [Arabido	0.139	0.273	0.737	8.2e-28

TAIR|locus:2196220 TCP8 "AT1G58100" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 1.1e-60, Sum P(4) = 1.1e-60
 Identities = 87/91 (95%), Positives = 89/91 (97%)

Query:   172 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 231
             KRSTKDRHTKVDGRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEPAI+AATG
Sbjct:    57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATG 116

Query:   232 TGTIPANFSTLNVSLRSSGSTLSAPPSKSAP 262
             TGTIPANFSTL+VSLRSSGSTLSAPPSKS P
Sbjct:   117 TGTIPANFSTLSVSLRSSGSTLSAPPSKSVP 147

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0001047 "core promoter binding" evidence=IDA

TAIR|locus:2014661 AT1G35560 "AT1G35560" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 82/91 (90%), Positives = 84/91 (92%)

Query:   170 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAA 229
             P KR +KDRH KVDGRGRRIRMPA CAARVFQLTREL HKSDGETIEWLLQQAEPAIIAA
Sbjct:    50 PAKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAA 109

Query:   230 TGTGTIPANFSTLNVSLRSSGSTLSAPPSKS 260
             TGTGTIPAN STLN+SLRSSGSTLSAP SKS
Sbjct:   110 TGTGTIPANISTLNISLRSSGSTLSAPLSKS 140

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2030321 AT1G72010 "AT1G72010" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 91/152 (59%), Positives = 105/152 (69%)

Query:   122 AVVDASLAIATRSSSTPA--P--NNQQNLNMXXXXXXXXXXXXXXXXXXXPPPVKRSTKD 177
             +V +A+L + +    +P   P  ++ Q+ N+                      VK+ TKD
Sbjct:     6 SVAEATLQLNSGEKPSPGSIPFISSGQHGNISTSATSSTSTSSGSALAVVKSAVKKPTKD 65

Query:   178 RHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPA 237
             RHTKVDGRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEPAIIA+TGTGTIPA
Sbjct:    66 RHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPA 125

Query:   238 NFSTLNVSLRSSG-STLSAPPSKSA--PHSFH 266
             NFSTLN SLRS G STL +  SKS+  P SFH
Sbjct:   126 NFSTLNASLRSGGGSTLFSQASKSSSSPLSFH 157

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2205065 TCP15 "AT1G69690" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
 Identities = 79/99 (79%), Positives = 90/99 (90%)

Query:   168 PPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 227
             PPP + STKDRHTKV+GRGRRIRMPA CAARVFQLTRELGHKSDGETIEWLLQQAEPA+I
Sbjct:    45 PPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVI 104

Query:   228 AATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFH 266
             AATGTGTIPANF++LN+SLRSS S+LSA   ++ P S++
Sbjct:   105 AATGTGTIPANFTSLNISLRSSRSSLSAAHLRTTPSSYY 143

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0008283 "cell proliferation" evidence=IGI

GO:0010229 "inflorescence development" evidence=IGI

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2079202 TCP14 "AT3G47620" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 85/134 (63%), Positives = 98/134 (73%)

Query:   134 SSSTPAPNNQQNLNMXXXXXXXXXXXXXXXXXXXPPPVKR-STKDRHTKVDGRGRRIRMP 192
             S S P   +Q++                       PP+KR STKDRHTKVDGRGRRIRMP
Sbjct:    75 SQSQPQSQSQKSQPQTTQKELLQTQEESAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMP 134

Query:   193 ATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGST 252
             A CAARVFQLTRELGHKSDGETIEWLLQQAEP++IAATGTGTIPANF++LN+SLRSSGS+
Sbjct:   135 ALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSS 194

Query:   253 LSAPPS-KSAPHSF 265
             +S P   +SA  +F
Sbjct:   195 MSLPSHFRSAASTF 208

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009739 "response to gibberellin stimulus" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IEP

GO:0008283 "cell proliferation" evidence=IGI

GO:0010229 "inflorescence development" evidence=IGI

GO:0031347 "regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009735 "response to cytokinin stimulus" evidence=IMP

TAIR|locus:2043659 TCP9 "TCP domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 65/85 (76%), Positives = 75/85 (88%)

Query:   169 PPVKR-STKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 227
             PP+KR STKDRHTKV+GRGRRIRMPATCAAR+FQLTRELGHKSDGETI WLL+ AEPAII
Sbjct:    68 PPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAII 127

Query:   228 AATGTGTIPANFSTLNVSLRSSGST 252
             AATGTGT+PA   ++N +L+   +T
Sbjct:   128 AATGTGTVPAIAMSVNGTLKIPTTT 152

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0008361 "regulation of cell size" evidence=IGI

GO:0048364 "root development" evidence=IMP

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

TAIR|locus:2166796 AT5G23280 "AT5G23280" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 63/83 (75%), Positives = 73/83 (87%)

Query:   172 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 231
             K   KDRH+KVDGRGRRIRMP  CAARVFQLTRELGHKSDG+TIEWLL+QAEP+IIAATG
Sbjct:    36 KPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATG 95

Query:   232 TGTIPANFSTLNVSLRSSGSTLS 254
             TGT PA+FST +VS+R + ++ S
Sbjct:    96 TGTTPASFSTASVSIRGATNSTS 118

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2092020 TCP20 "AT3G27010" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 72/143 (50%), Positives = 84/143 (58%)

Query:   115 PVPPTQHAVVDASLAIATRSSSTPAPNNQQNLNMXXXXXXXXXXXXXXXXXXXPPPVKRS 174
             P PP    +VD   A A  S     P  +                          P + S
Sbjct:    18 PPPPRNQGLVDDDAASAVVSDENRKPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSS 77

Query:   175 TKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGT 234
              KDRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI+WLLQQAEP+IIAATG+GT
Sbjct:    78 NKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGT 137

Query:   235 IPANF--STLNVSLRSSGSTLSA 255
             IPA+   S+   S    G +L+A
Sbjct:   138 IPASALASSAATSNHHQGGSLTA 160

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0000987 "core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008361 "regulation of cell size" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:1900056 "negative regulation of leaf senescence" evidence=IGI

TAIR|locus:2150803 TCP11 "AT5G08330" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 64/82 (78%), Positives = 72/82 (87%)

Query:   172 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATG 231
             K  +KDRH+KVDGRGRRIRMP  CAARVFQLTRELGHKSDG+TIEWLL+QAEP+IIAATG
Sbjct:    28 KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATG 87

Query:   232 TGTIPANFSTLNVSLRSSGSTL 253
             TGT PA+FST ++S  SS  TL
Sbjct:    88 TGTTPASFSTASLST-SSPFTL 108

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2166518 AT5G51910 "AT5G51910" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 59/80 (73%), Positives = 70/80 (87%)

Query:   168 PPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 227
             P P + ++KDRHTKV+GRGRRIRMPA CAARVFQLTRELGHKSDGETI WLL++AEPAII
Sbjct:    50 PAPKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAII 109

Query:   228 AATGTGTIPANFSTLNVSLR 247
              ATGTGT+PA   ++N +L+
Sbjct:   110 EATGTGTVPAIAVSVNGTLK 129

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0031347 "regulation of defense response" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_86000009 hypothetical protein (567 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	574
pfam03634	122	pfam03634, TCP, TCP family transcription factor	3e-37
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	9e-05
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	0.003

>gnl|CDD|217650 pfam03634, TCP, TCP family transcription factor

 Score =  133 bits (338), Expect = 3e-37
 Identities = 51/107 (47%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 168 PPPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAII 227
               K     RHTKV GR RR+R+ A CAAR F L  ELG  S  +TIEWLLQQA+PAII
Sbjct: 1   AAGKKDRHSKRHTKVGGRDRRVRLSAECAARFFDLQDELGFDSPSKTIEWLLQQAKPAII 60

Query: 228 AATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHSFHGALALAAA 274
           A TGT T PA             S  SA  S   P     AL LA  
Sbjct: 61  ALTGTSTPPA----------KCSSAKSAAKSSKDPQQAASALNLAKE 97

This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure. Length = 122

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 33/198 (16%), Positives = 44/198 (22%), Gaps = 10/198 (5%)

Query: 366 QSQGESGGGGEERRKQMQNKQQQQQVLPATPMWAVTPGPPSSGAGSTFWMVTGASGAAAG 425
           Q+  +     EE   Q+Q +QQ  Q+            PP   A        G      G
Sbjct: 147 QTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQ----QGPPEQPPG 202

Query: 426 AGPSEQQPQPQPQIWPFQHPVAAATPSTATTLQAPLHFVPRFNLPTGNLEFQTGRAANPL 485
                Q    Q Q   F    + A        Q P    P        L  Q        
Sbjct: 203 YPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQP 262

Query: 486 QLGSMLMHQHQHQQQPSQQLGL--GMNESNLGMLAALNAVYSRAGGLNMN----MNMTAE 539
                   Q Q Q  P  Q     G+ +     L                         E
Sbjct: 263 PQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFRE 322

Query: 540 QNNPMEHHHHHQHHQQQQ 557
           Q   +         Q++ 
Sbjct: 323 QLVQLSQQQREALSQEEA 340

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 23/122 (18%)

Query: 47  GRSVPFISSISIQAGLSHGGGGGGSGGAVHVITSSSSTTASSSTTGSSSSSSLSSSSSLT 106
           G+ VP+I       GL  G  G              ST ++ + + +SS+++ SS S  T
Sbjct: 552 GKGVPYI------PGLFAGNPG--------------STNSTPTGSAASSNTTFSSDSPST 591

Query: 107 LSSPSSTNPVPPTQHAVVDASLAIATRSSSTPAPNNQQNLNMTATASTSTTTAITTTTTT 166
           + +PS++   PP  H     +      S ST  P +      T  +S  ++  + +T T 
Sbjct: 592 VVAPSTS---PPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETA 648

Query: 167 AP 168
           +P
Sbjct: 649 SP 650

Length = 670

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	574
PF03634	138	TCP: TCP family transcription factor; InterPro: IP	99.97
PLN03105	324	TCP24 transcription factor TCP24 (TEOSINTE BRANCHE	99.92
PLN03106	447	TCP2 Protein TCP2; Provisional	99.9

>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]

Probab=99.97  E-value=3.9e-32  Score=238.13  Aligned_cols=66  Identities=33%  Similarity=0.578  Sum_probs=61.6

Q ss_pred             CCCCcccccC----CCCcccccCHHHHHHHhhhhhhhCCCCCchHHHHHHhhcHHHHHHhhCCCCCCCCc
Q 008187          174 STKDRHTKVD----GRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANF  239 (574)
Q Consensus       174 s~KDRHSKV~----~RDRRmRLs~~~A~rfF~LQdeLGfdk~skTIeWLL~qskpAI~aaTgtgtiP~nf  239 (574)
                      .+||||+|||    +||||||||++||++||+||||||||||||||||||.+||+||++++.....|.+.
T Consensus         3 ~~kdrhski~Ta~g~RdRRvRLs~~~Ar~FFdLQDmLGfDKaSKTveWLL~kSk~AIkeL~~~~~~~~s~   72 (138)
T PF03634_consen    3 GKKDRHSKIHTAQGPRDRRVRLSLEIARKFFDLQDMLGFDKASKTVEWLLTKSKKAIKELTQSSSSSSSE   72 (138)
T ss_pred             CCCCCCCccccccCCCCCceecCHHHHHHHHHHHHHhcCCCCCchHHHHHHhCHHHHHHHHHhhcccccc
Confidence            4799999999    79999999999999999999999999999999999999999999999987776643

The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].

>PLN03105 TCP24 transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional

Probab=99.92  E-value=1.2e-25  Score=220.51  Aligned_cols=84  Identities=33%  Similarity=0.497  Sum_probs=72.2

Q ss_pred             CCCCcccccC----CCCcccccCHHHHHHHhhhhhhhCCCCCchHHHHHHhhcHHHHHHhhCCCCCCCCccccccccccC
Q 008187          174 STKDRHTKVD----GRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSS  249 (574)
Q Consensus       174 s~KDRHSKV~----~RDRRmRLs~~~A~rfF~LQdeLGfdk~skTIeWLL~qskpAI~aaTgtgtiP~nfstln~slr~s  249 (574)
                      .+||||+||+    +||||||||++||++||+|||||||||+||||||||.+||+||++++...+   .|..++.++...
T Consensus        49 g~KDRHSKI~TAqGpRDRRvRLSv~iArkFFdLQDmLGFDKaSKTVEWLL~kSk~AI~ELp~l~~---~~~~~~qnq~~~  125 (324)
T PLN03105         49 GGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPLLNT---NFDHLDQNQNQT  125 (324)
T ss_pred             CCCCcccceecccCCcccceecCHHHHHHHhhHHHHhCCCCcchHHHHHHHHhHHHHHhcccCcc---cchhHHHHhhcc
Confidence            5899999999    799999999999999999999999999999999999999999999987654   488888777665


Q ss_pred             CCcccCCCCCC
Q 008187          250 GSTLSAPPSKS  260 (574)
Q Consensus       250 ~s~~s~p~~~~  260 (574)
                      -|.-+.-.++.
T Consensus       126 kS~cSS~Tskg  136 (324)
T PLN03105        126 KSACSSGTSES  136 (324)
T ss_pred             cccccCCCCCC
Confidence            55544444443

>PLN03106 TCP2 Protein TCP2; Provisional

Probab=99.90  E-value=2.1e-24  Score=219.53  Aligned_cols=60  Identities=33%  Similarity=0.577  Sum_probs=57.6

Q ss_pred             CCCCcccccC----CCCcccccCHHHHHHHhhhhhhhCCCCCchHHHHHHhhcHHHHHHhhCCC
Q 008187          174 STKDRHTKVD----GRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTG  233 (574)
Q Consensus       174 s~KDRHSKV~----~RDRRmRLs~~~A~rfF~LQdeLGfdk~skTIeWLL~qskpAI~aaTgtg  233 (574)
                      .+||||+||+    +||||||||++||+|||+|||||||||+||||||||++||+||++++.+.
T Consensus        73 g~KDRHSKI~Ta~G~RDRRvRLS~~~ArkFFdLQD~LGfDkaSKTvEWLL~~Sk~AI~EL~~l~  136 (447)
T PLN03106         73 GGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLN  136 (447)
T ss_pred             CCCCcccceecccCCcccceeccHHHHHHHHhHHHHhCCCCcchHHHHHHHHhHHHHHHhhccc
Confidence            5799999999    89999999999999999999999999999999999999999999998754

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00