Citrus Sinensis ID: 008199

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
MEHSSEEDSDISESEMLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLTGCSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVITAEGKHKVCISLISKFDLSMF
ccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHccccccEEEcccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccEEEEEccccccccccc
ccccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccEEEcccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccEEEEEEccccccccccEccccHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHcccccHHHHHcccccccEEEEEEEHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccEEEEEEEccccccccc
mehsseedsdisesemLKYEDKSYKKlksgnhsvkisdeaftcpycpkkrkqEYLYKDLLQHasgvgnstsnkRSAKEKANHLALAKYLEKDlrdagspskpvnegdpltgcshdekfvwpwtgivvniptrraedgrsvgesgSKLRDELIrrgfnptrvhplwnfrghsgcavvefhkdwpglhnamsfEKAYEadhygkkdwyasnqeksGLYAWVARsddynlkniigdhlrkiGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVmkhmgddgdIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKELSGRAHIglkrmgeldnkpfLEVMNRKYNEEEAEERASELCSLWEeylkdpdwhpfkvitaegKHKVCISLISKFDLSMF
mehsseedsdiseseMLKYEDKSYKKLKsgnhsvkisdeaftcpycPKKRKQEYLYKDLLQHASgvgnstsnkrsaKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLTGCSHDEKFVWPWTGIVvniptrraedgrsvgesgsklrdeliRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKqnllvsnltNMIEVKDKHLEEMKERFtetsnsvekLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELElrgeelekretqnendrKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKhmgddgdieVLQKMETVLKDLrekegelddlealnqtliirerksndelqDARKELINALKElsgrahiglkrmgeldnkpfLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVITAEGKHKVCISLISKFDLSMF
MehsseedsdiseseMLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLTGCSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHeklklqlesqkkelelrgeelekreTQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYNeeeaeeraseLCSLWEEYLKDPDWHPFKVITAEGKHKVCISLISKFDLSMF
*************************************DEAFTCPYCPKKRKQEYLYKDLLQ*************************************************GCSHDEKFVWPWTGIVVNIPT*******************LIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTI*************LVSNLT********************************************IQLSARDHFQRIFT**********************************************************************************IIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVL***************LNQTLII**************************AHIGLK*********FL*****************ELCSLWEEYLKDPDWHPFKVITAEGKHKVCISLISKFD****
*****************KYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHA********************AL*******************************KFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYG*************LYAWVARSDDY*******************************************************************************************************************************************************************************************************************************************************************************************************************ELCSLWEEYLKDPDWHPFKVITAEGKHKVCISLISKFDLSMF
***************MLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASG***************NHLALAKYLEKD**************DPLTGCSHDEKFVWPWTGIVVNIPTRR***********SKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGE**********NDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYN**********LCSLWEEYLKDPDWHPFKVITAEGKHKVCISLISKFDLSMF
***********SESEMLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDA*****************HDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVITAEGKHKVCISLISKFDLSMF
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MEHSSEEDSDISESEMLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLTGCSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxARDHFQRIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKGSLNVMKHMGDDGDIEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAHIGLKRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVITAEGKHKVCISLISKFDLSMF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query574 2.2.26 [Sep-21-2011]
Q9LDX1625 Protein SUPPRESSOR OF GEN no no 0.602 0.553 0.227 0.0004
>sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1 Back     alignment and function desciption
 Score = 47.0 bits (110), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 171/409 (41%), Gaps = 63/409 (15%)

Query: 41  FTCPYCPKKRKQEYLYK--DLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGS 98
           + CP C         Y    LL HA   G        A+    H  LA+ LEKDL+  G+
Sbjct: 226 WHCPACQNGPGAIDWYNLHPLLAHARTKG--------ARRVKLHRELAEVLEKDLQMRGA 277

Query: 99  PSKPVNE-GDPLTGCSHDEK---FVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRR 154
              P  E      G   DEK    VWP   I++N    + ++ + +G    +L +   + 
Sbjct: 278 SVIPCGEIYGQWKGLGEDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDK- 336

Query: 155 GFNPTRVHPLWNFRGHSGCAVVEFHKDWPG------LHNAMSFEKAYEADHYGKKDWYAS 208
            +   R    +  +GH G +V+ F     G      LH  ++ E   +   +G+K    S
Sbjct: 337 -YEALRARHSYGPQGHRGMSVLMFESSATGYLEAERLHRELA-EMGLDRIAWGQKRSMFS 394

Query: 209 NQEKSGLYAWVARSDDYNLKNIIGDHLRKIG-DLKTISEMMEEEARK---QNLLVSNLTN 264
              +  LY ++A   D ++ N       ++  +LK+  EM+ +E R+    N  ++   N
Sbjct: 395 GGVRQ-LYGFLATKQDLDIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKN 453

Query: 265 MIEVKDKH-------LEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQ 317
            +  ++KH       LE M E+   T+    +++ ++ ++    N E    ++ A D F 
Sbjct: 454 KLSKQNKHAKVLEESLEIMSEKLRRTAED-NRIVRQRTKMQHEQNRE----EMDAHDRF- 507

Query: 318 RIFTD-----HEKL-----KLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAM 367
             F D     HE+        ++  Q++  ++ G++ +     + +D +  AEE+     
Sbjct: 508 --FMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEV----- 560

Query: 368 RNNSLQLASLVQQKADENVRKLAEDQKKQKEDL----HNRIIQLEKQLD 412
            ++ ++      ++  E    L +DQ+K+ ED+    H  I  LEK+ D
Sbjct: 561 -SSFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRHHEEIFDLEKEFD 608
Required for post-transcriptional gene silencing and natural virus resistance. May bind nucleic acids and is essential for the biogenesis of trans-acting siRNAs but is not required for silencing induced by IR-PTGS. Involved in the juvenile-to-adult transition regulation. In case of begomoviruses infection, it is targeted by the viral protein V2 leading to suppression of post-transcriptional gene silencing.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
255584877640 conserved hypothetical protein [Ricinus 0.979 0.878 0.761 0.0
225449483641 PREDICTED: uncharacterized protein LOC10 0.940 0.842 0.744 0.0
224112749 721 predicted protein [Populus trichocarpa] 0.921 0.733 0.706 0.0
356539854640 PREDICTED: uncharacterized protein LOC10 0.977 0.876 0.691 0.0
449459906643 PREDICTED: uncharacterized protein LOC10 0.945 0.844 0.721 0.0
449503267631 PREDICTED: uncharacterized LOC101219429 0.944 0.858 0.717 0.0
356523864654 PREDICTED: uncharacterized protein LOC10 0.977 0.857 0.646 0.0
356561201635 PREDICTED: uncharacterized protein LOC10 0.966 0.874 0.660 0.0
356499107 1172 PREDICTED: uncharacterized protein LOC10 0.977 0.478 0.630 0.0
356553836 1154 PREDICTED: uncharacterized protein LOC10 0.977 0.486 0.624 0.0
>gi|255584877|ref|XP_002533154.1| conserved hypothetical protein [Ricinus communis] gi|223527049|gb|EEF29235.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/563 (76%), Positives = 500/563 (88%), Gaps = 1/563 (0%)

Query: 1   MEHSSEEDSDISESEMLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLL 60
           ++HSS+ED+D+SESE+ +YE + Y++LK+G H VKISDE FTCPYCPKKRK+EYLY+DLL
Sbjct: 5   VDHSSDEDTDMSESELDEYEAQCYEELKNGTHHVKISDETFTCPYCPKKRKREYLYRDLL 64

Query: 61  QHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLTGCSHDEKFVW 120
           QHASGVG S S KRS KEKANHLAL KYLEKD+ D GSPSKP  E DPL  C+HDEK VW
Sbjct: 65  QHASGVGRSASKKRSTKEKANHLALVKYLEKDIADLGSPSKPKGESDPLDSCNHDEKIVW 124

Query: 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180
           PWTGIV+NIPT +A DGR VG SGSK RDELI RGFNPTRVHPLWN+RGHSG AVVEFHK
Sbjct: 125 PWTGIVINIPTTKAPDGRFVGASGSKFRDELISRGFNPTRVHPLWNYRGHSGSAVVEFHK 184

Query: 181 DWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGD 240
           DWPGLHNA+SFEKAYEADH+GKKD++ +  EKSG+Y WVAR+DDY   NIIGDHLRK GD
Sbjct: 185 DWPGLHNALSFEKAYEADHHGKKDYFTTG-EKSGVYCWVARADDYKADNIIGDHLRKTGD 243

Query: 241 LKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQS 300
           LKTISE+MEEEARKQ+ L+SNL N+IE+K+KH++EM+++F+ETS S+ KLMEEKDRLLQ+
Sbjct: 244 LKTISEIMEEEARKQDKLISNLNNIIEIKNKHIQEMQDKFSETSVSLNKLMEEKDRLLQA 303

Query: 301 YNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAE 360
           YNEEI+KIQ+SAR+HFQ+IF DHEKLKLQ++SQK+ELE+RG ELEKRE +NENDR+ L+E
Sbjct: 304 YNEEIRKIQMSAREHFQKIFNDHEKLKLQVDSQKRELEMRGSELEKREAKNENDRRKLSE 363

Query: 361 EIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALE 420
           EIEKNA+RN+SLQLA+  QQKADENV KLAEDQK+QKE+LHNRIIQL+KQLDAKQAL LE
Sbjct: 364 EIEKNAIRNSSLQLAAFEQQKADENVLKLAEDQKRQKEELHNRIIQLQKQLDAKQALELE 423

Query: 421 IERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDE 480
           IERL+G+LNVMKHMGDDGD+EVLQKMET++++LREKEGEL+DLE LNQ LI+ ERKSNDE
Sbjct: 424 IERLRGTLNVMKHMGDDGDVEVLQKMETIIQNLREKEGELEDLETLNQALIVSERKSNDE 483

Query: 481 LQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEE 540
           LQ+ARKELIN LKE+S RA IG+KRMGELD+KPFLE M RKY EEEAE RASELCSLW E
Sbjct: 484 LQEARKELINGLKEISNRAQIGVKRMGELDSKPFLEAMKRKYTEEEAEVRASELCSLWVE 543

Query: 541 YLKDPDWHPFKVITAEGKHKVCI 563
           YLKDP WHPFKV   +GK+K  I
Sbjct: 544 YLKDPGWHPFKVAMVDGKNKEVI 566

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449483|ref|XP_002278500.1| PREDICTED: uncharacterized protein LOC100244410 [Vitis vinifera] gi|296086223|emb|CBI31664.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112749|ref|XP_002316281.1| predicted protein [Populus trichocarpa] gi|222865321|gb|EEF02452.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356539854|ref|XP_003538408.1| PREDICTED: uncharacterized protein LOC100812353 [Glycine max] Back     alignment and taxonomy information
>gi|449459906|ref|XP_004147687.1| PREDICTED: uncharacterized protein LOC101219429 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449503267|ref|XP_004161917.1| PREDICTED: uncharacterized LOC101219429 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356523864|ref|XP_003530554.1| PREDICTED: uncharacterized protein LOC100806029 [Glycine max] Back     alignment and taxonomy information
>gi|356561201|ref|XP_003548872.1| PREDICTED: uncharacterized protein LOC100786758 [Glycine max] Back     alignment and taxonomy information
>gi|356499107|ref|XP_003518385.1| PREDICTED: uncharacterized protein LOC100806426 [Glycine max] Back     alignment and taxonomy information
>gi|356553836|ref|XP_003545257.1| PREDICTED: uncharacterized protein LOC100790814 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
TAIR|locus:2114560647 IDN2 "AT3G48670" [Arabidopsis 0.945 0.839 0.539 2.8e-160
TAIR|locus:2014754736 FDM4 "AT1G13790" [Arabidopsis 0.759 0.592 0.409 1.5e-108
TAIR|locus:2825160634 FDM5 "factor of DNA methylatio 0.932 0.843 0.389 8.4e-97
TAIR|locus:2200487634 FDM1 "factor of DNA methylatio 0.933 0.845 0.381 8.4e-97
TAIR|locus:2126081635 FDM2 "AT4G00380" [Arabidopsis 0.937 0.847 0.382 6.8e-95
TAIR|locus:2148323561 AT5G59390 [Arabidopsis thalian 0.764 0.782 0.388 2.5e-81
TAIR|locus:2125078554 AT4G01180 "AT4G01180" [Arabido 0.778 0.806 0.380 5.2e-81
TAIR|locus:2171716625 SGS3 "SUPPRESSOR OF GENE SILEN 0.601 0.552 0.206 4.9e-07
ZFIN|ZDB-GENE-030131-8984 4762 pleca "plectin a" [Danio rerio 0.461 0.055 0.225 9.3e-07
UNIPROTKB|F1N1F8 3077 CENPF "Uncharacterized protein 0.501 0.093 0.247 8.8e-06
TAIR|locus:2114560 IDN2 "AT3G48670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1561 (554.6 bits), Expect = 2.8e-160, P = 2.8e-160
 Identities = 296/549 (53%), Positives = 387/549 (70%)

Query:    16 MLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRS 75
             M +Y DK Y  LK G   V++S +AF CPYCP K+K  + YKDLLQHASGVGNS S+KRS
Sbjct:    21 MDEYGDKMYLNLKGGKLKVRLSPQAFICPYCPNKKKTSFQYKDLLQHASGVGNSNSDKRS 80

Query:    76 AKEKANHLALAKYLEKDLRDAGSPSKPVNE----GDPLTGCSHDEKFVWPWTGIVVNIPT 131
             AKEKA+HLAL KYL++DL D+ S ++P ++    G+P+  C HDEK V+PW GIVVNIPT
Sbjct:    81 AKEKASHLALVKYLQQDLADSASEAEPSSKRQKNGNPIQDCDHDEKLVYPWKGIVVNIPT 140

Query:   132 RRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSF 191
              +A+DGRS GESGSKLRDE I RGFNPTRV PLWN+ GHSG A+VEF+KDW GLHN + F
Sbjct:   141 TKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 200

Query:   192 EKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEE 251
             +KAY  D +GKKDW   +  K GLY W+AR+DDYN  NIIG++LRK GDLKTI+E+ EEE
Sbjct:   201 DKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEE 260

Query:   252 ARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLS 311
             ARKQ LLV NL  ++E K K ++E++E  +  S  + +LMEEK++  Q +  E+  IQ  
Sbjct:   261 ARKQELLVQNLRQLVEEKKKDMKEIEELCSVKSEELNQLMEEKEKNQQKHYRELNAIQER 320

Query:   312 ARDHFQRIFTDHXXXXXXXXXXXXXXXXXXXXXXXXXTQNENDRKILAEEIEKNAMRNNS 371
                H Q+I  DH                           N  +R  L+E++E+NA +N+S
Sbjct:   321 TMSHIQKIVDDHEKLKRLLESERKKLEIKCNELAKREVHNGTERMKLSEDLEQNASKNSS 380

Query:   372 LQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVM 431
             L+LA++ QQKADE V+KLAEDQ++QKE+LH +II+LE+Q D KQA+ LE+E+LKG LNVM
Sbjct:   381 LELAAMEQQKADEEVKKLAEDQRRQKEELHEKIIRLERQRDQKQAIELEVEQLKGQLNVM 440

Query:   432 KHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINA 491
             KHM  DGD EV+++++ + KDL EKE +L DL+  NQTLI+RER++NDELQ+A KEL+N 
Sbjct:   441 KHMASDGDAEVVKEVDIIFKDLGEKEAQLADLDKFNQTLILRERRTNDELQEAHKELVNI 500

Query:   492 LKELSGRAHIGLKRMGELDNKPFLEVMNRKYNXXXXXXXXXXLCSLWEEYLKDPDWHPFK 551
             +KE +   +IG+KRMGEL  KPF++ M +KY           +  LWE YLKD DWHPFK
Sbjct:   501 MKEWN--TNIGVKRMGELVTKPFVDAMQQKYCQQDVEDRAVEVLQLWEHYLKDSDWHPFK 558

Query:   552 VITAEGKHK 560
              +  E + +
Sbjct:   559 RVKLENEDR 567
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0006306 "DNA methylation" evidence=IGI;IMP
GO:0006342 "chromatin silencing" evidence=IGI
TAIR|locus:2014754 FDM4 "AT1G13790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825160 FDM5 "factor of DNA methylation 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200487 FDM1 "factor of DNA methylation 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126081 FDM2 "AT4G00380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148323 AT5G59390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125078 AT4G01180 "AT4G01180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171716 SGS3 "SUPPRESSOR OF GENE SILENCING 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8984 pleca "plectin a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N1F8 CENPF "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018471001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (641 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
pfam03468116 pfam03468, XS, XS domain 3e-47
cd12266107 cd12266, RRM_like_XS, RNA recognition motif-like X 3e-40
pfam0347043 pfam03470, zf-XS, XS zinc finger domain 2e-17
pfam03469132 pfam03469, XH, XH domain 3e-16
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-05
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 5e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
COG3206458 COG3206, GumC, Uncharacterized protein involved in 2e-04
pfam01496 707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 5e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-04
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-04
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.001
pfam14362297 pfam14362, DUF4407, Domain of unknown function (DU 0.001
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.004
pfam05622 713 pfam05622, HOOK, HOOK protein 0.004
pfam04849307 pfam04849, HAP1_N, HAP1 N-terminal conserved regio 0.004
>gnl|CDD|217578 pfam03468, XS, XS domain Back     alignment and domain information 
 Score =  160 bits (406), Expect = 3e-47
 Identities = 65/117 (55%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 115 DEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCA 174
           +EK+VWPW GI+VN+PT + +DGR VGESG+ LRD L R  FNP +V PLWN  GH+G A
Sbjct: 2   EEKYVWPWMGILVNVPTEKKKDGRGVGESGATLRDRLSR--FNPLKVKPLWNREGHTGFA 59

Query: 175 VVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNII 231
           +V+F KDW G  +A+ FEK +E   +GKKDW A   + S LY WVAR+DDYN   ++
Sbjct: 60  IVKFAKDWSGFRDALRFEKHFEKQGHGKKDWLARRGQDSKLYGWVARADDYNSPGLV 116

The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition. Length = 116
>gnl|CDD|240712 cd12266, RRM_like_XS, RNA recognition motif-like XS domain found in plants Back     alignment and domain information
>gnl|CDD|217580 pfam03470, zf-XS, XS zinc finger domain Back     alignment and domain information
>gnl|CDD|217579 pfam03469, XH, XH domain Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407) Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein Back     alignment and domain information
>gnl|CDD|191111 pfam04849, HAP1_N, HAP1 N-terminal conserved region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 574
PF03468116 XS: XS domain; InterPro: IPR005380 The XS (rice ge 100.0
PF03469132 XH: XH domain; InterPro: IPR005379 The XH (rice ge 99.94
PF0347043 zf-XS: XS zinc finger domain; InterPro: IPR005381 99.7
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.74
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.67
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.61
PF10174775 Cast: RIM-binding protein of the cytomatrix active 96.61
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.32
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.3
KOG05791187 consensus Ste20-like serine/threonine protein kina 96.02
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 95.99
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.93
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.9
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 95.89
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.75
PRK11637428 AmiB activator; Provisional 95.61
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.57
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 95.18
PF15066527 CAGE1: Cancer-associated gene protein 1 family 95.16
PRK11637428 AmiB activator; Provisional 95.03
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 94.8
KOG0996 1293 consensus Structural maintenance of chromosome pro 94.74
PF07888 546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.32
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 94.23
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 93.97
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 93.97
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 93.91
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 93.6
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 93.51
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 92.7
PHA02562562 46 endonuclease subunit; Provisional 92.62
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 92.36
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 91.47
PRK02224 880 chromosome segregation protein; Provisional 91.43
KOG0964 1200 consensus Structural maintenance of chromosome pro 91.34
KOG0933 1174 consensus Structural maintenance of chromosome pro 91.3
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 91.19
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 90.44
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 89.75
PRK09039343 hypothetical protein; Validated 89.6
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 89.35
KOG0239 670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 89.14
KOG1937521 consensus Uncharacterized conserved protein [Funct 89.06
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 89.01
KOG0971 1243 consensus Microtubule-associated protein dynactin 88.65
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 88.46
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 88.43
PF0560554 zf-Di19: Drought induced 19 protein (Di19), zinc-b 88.38
PRK02224 880 chromosome segregation protein; Provisional 88.28
KOG4572 1424 consensus Predicted DNA-binding transcription fact 87.9
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 86.48
KOG0933 1174 consensus Structural maintenance of chromosome pro 86.14
PF05010207 TACC: Transforming acidic coiled-coil-containing p 85.68
PF0007670 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or 85.19
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 85.12
PRK04863 1486 mukB cell division protein MukB; Provisional 84.73
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 84.69
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 84.17
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 83.78
KOG0979 1072 consensus Structural maintenance of chromosome pro 83.7
PF13851201 GAS: Growth-arrest specific micro-tubule binding 83.59
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 83.38
KOG0577 948 consensus Serine/threonine protein kinase [Signal 82.96
KOG0962 1294 consensus DNA repair protein RAD50, ABC-type ATPas 82.81
PF05701522 WEMBL: Weak chloroplast movement under blue light; 82.5
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 82.48
PF05701 522 WEMBL: Weak chloroplast movement under blue light; 81.53
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 81.29
PF1425970 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or 81.15
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 80.43
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 80.03
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT Back     alignment and domain information 
Probab=100.00  E-value=8.9e-46  Score=333.86  Aligned_cols=115  Identities=53%  Similarity=0.990  Sum_probs=88.2

Q ss_pred             CCceeeecceEEEeecccccc-CCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHHHH
Q 008199          114 HDEKFVWPWTGIVVNIPTRRA-EDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFE  192 (574)
Q Consensus       114 ~de~iVWPwmgIi~N~~t~e~-~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~fe  192 (574)
                      +|++|||||||||+||+| ++ ++|+++|+|+++|+++|+.  |+|.+|+||||+.||+|+|||+|++||+||+||++||
T Consensus         1 qdd~~VWPwmgIi~N~~~-~~~~~g~~~g~~~~~l~~~l~~--f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~   77 (116)
T PF03468_consen    1 QDDLIVWPWMGIIVNIPT-EKDDDGRWVGMSNEELLDKLAE--FNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLE   77 (116)
T ss_dssp             ---EEEES-EEEEE-----EE-TTS-EE---SHHHHHHHHH-----SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred             CCCcccCCCEEEEEcCcc-ccCCCCceeccCHHHHHHHHHh--cCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHH
Confidence            589999999999999999 65 6899999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHhhhcCCChhhhhhhccCCCcceeeeeccCCCCCCCcc
Q 008199          193 KAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNII  231 (574)
Q Consensus       193 ~~Fe~~~~GKkdW~~~~~~~~~LYGwvAradD~~~~~~i  231 (574)
                      +||+.+||||+||.+++..+++||||||++|||++.|||
T Consensus        78 ~~F~~~~~Gr~dW~~~~~~~~~lYGw~A~~dD~~~~~~i  116 (116)
T PF03468_consen   78 KHFEAQGHGRKDWERRRGGGSQLYGWVARADDYNSPGPI  116 (116)
T ss_dssp             HHHHHTT-SHHHHT-SSS---S-EEEE-BHHHHHSSSHH
T ss_pred             HHHHHcCCCHHHHhhccCCCCceeeeeCchhhccCCCCC
Confidence            999999999999999887899999999999999999986

SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT Back     alignment and domain information
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF00076 RRM_1: RNA recognition motif Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF14259 RRM_6: RNA recognition motif (a Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
4e8u_A172 Crystal Structure Of Arabidopsis Idn2 Xs Domain Alo 2e-64
>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With A Small Segment Of Adjacent Coiled-Coil Region Length = 172 Back     alignment and structure 
Iteration: 1

 Score =  243 bits (620), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 111/167 (66%), Positives = 133/167 (79%)
Query: 112 CSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHS 171
           C HDEK V+PW GIVVNIPT +A+DGRS GESGSKLRDE I RGFNPTRV PLWN+ GHS
Sbjct: 3   CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHS 62
Query: 172 GCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNII 231
           G A+VEF+KDW GLHN + F+KAY  D +GKKDW   +  K GLY W+AR+DDYN  NII
Sbjct: 63  GTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNII 122
Query: 232 GDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKE 278
           G++LRK GDLKTI+E+ EEEARKQ LLV NL  ++E K K ++E++E
Sbjct: 123 GENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEE 169

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 4e-70
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-04
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 3e-05
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 5e-04
2xs1_A704 Programmed cell death 6-interacting protein; prote 5e-04
2qag_B427 Septin-6, protein NEDD5; cell cycle, cell division 6e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 6e-04
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Length = 172 Back     alignment and structure
 Score =  222 bits (567), Expect = 4e-70
 Identities = 111/170 (65%), Positives = 134/170 (78%)

Query: 110 TGCSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG 169
           + C HDEK V+PW GIVVNIPT +A+DGRS GESGSKLRDE I RGFNPTRV PLWN+ G
Sbjct: 1   SDCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLG 60

Query: 170 HSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKN 229
           HSG A+VEF+KDW GLHN + F+KAY  D +GKKDW   +  K GLY W+AR+DDYN  N
Sbjct: 61  HSGTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNN 120

Query: 230 IIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKER 279
           IIG++LRK GDLKTI+E+ EEEARKQ LLV NL  ++E K K ++E++E 
Sbjct: 121 IIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEEL 170
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 100.0
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.29
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 94.07
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.0
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.34
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 91.79
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 90.45
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 88.37
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 88.31
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 88.12
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 87.38
1wez_A102 HnRNP H', FTP-3, heterogeneous nuclear ribonucleop 86.56
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 86.38
2dgw_A91 Probable RNA-binding protein 19; RRM domain, struc 85.9
2lxi_A91 RNA-binding protein 10; NMR {Homo sapiens} 84.96
2dnn_A109 RNA-binding protein 12; RRM domain, RBD, structura 84.94
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 84.8
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 84.05
2lmi_A107 GRSF-1, G-rich sequence factor 1; G-rich RNA seque 83.14
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 82.82
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 82.79
2err_A109 Ataxin-2-binding protein 1; protein-RNA complex, R 82.41
2e5j_A97 Methenyltetrahydrofolate synthetase domain contain 81.89
1x4a_A109 Splicing factor, arginine/serine-rich 1 (splicing 81.71
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 81.71
2hgm_A126 HNRPF protein, heterogeneous nuclear ribonucleopro 81.66
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1.1e-65  Score=487.40  Aligned_cols=170  Identities=65%  Similarity=1.136  Sum_probs=162.1

Q ss_pred             CCCCceeeecceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhhhHhHHHH
Q 008199          112 CSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSF  191 (574)
Q Consensus       112 ~~~de~iVWPwmgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~f  191 (574)
                      ++++++|||||||||+||||++.+||+++|+|+++|+++|+..||+|++|+|+||++||+|+|||+|++||+||+||++|
T Consensus         3 ~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f   82 (172)
T 4e8u_A            3 CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF   82 (172)
T ss_dssp             ---CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred             CCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence            68899999999999999999666899999999999999997777999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCChhhhhhhccCCCcceeeeeccCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008199          192 EKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDK  271 (574)
Q Consensus       192 e~~Fe~~~~GKkdW~~~~~~~~~LYGwvAradD~~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~  271 (574)
                      |+||+.+||||+||.+++..+++|||||||+|||++.||||+||||+||||||+||++|++|++++||++|+++|++||+
T Consensus        83 ek~Fe~~~~GK~dW~~~~~~~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~kn~  162 (172)
T 4e8u_A           83 DKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKK  162 (172)
T ss_dssp             HHHHHHTTCSHHHHTCSSSCCCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHhhCCCCCCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhh
Q 008199          272 HLEEMKERFT  281 (574)
Q Consensus       272 ~l~elE~k~~  281 (574)
                      ||++||++||
T Consensus       163 ~l~ele~k~~  172 (172)
T 4e8u_A          163 DMKEIEELCS  172 (172)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhhC
Confidence            9999999996
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens} Back     alignment and structure
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 94.58
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 90.75
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 89.3
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 88.83
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 88.73
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 87.9
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 87.51
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 86.36
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 85.81
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 85.61
d2cpya1103 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 84.34
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 83.48
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 81.83
d1uawa_77 Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} 81.53
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 80.57
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 80.5
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.58  E-value=0.019  Score=44.54  Aligned_cols=60  Identities=20%  Similarity=0.250  Sum_probs=47.6

Q ss_pred             eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCChhhhHhHHHHHHH
Q 008199          123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKA  194 (574)
Q Consensus       123 mgIi~N~~t~e~~dg~~~G~s~~~L~~~l~~~GF~p~-kv~~l~~~~Gh~g~aIV~F~~dw~Gf~nA~~fe~~  194 (574)
                      ++.|-|+|.         ..+...|++.|+.  |.+. .++...++.+++|+|.|+|. +-.+-..|+.++.+
T Consensus         2 tv~V~nlp~---------~~t~~~l~~~F~~--~G~I~~v~~~~~~~~~~~~afV~F~-~~~~a~~Al~~~~~   62 (75)
T d2ghpa2           2 TVLVKNLPK---------SYNQNKVYKYFKH--CGPIIHVDVADSLKKNFRFARIEFA-RYDGALAAITKTHK   62 (75)
T ss_dssp             EEEEEEECT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSSSEEEEEEES-SHHHHHHHHTTTTC
T ss_pred             EEEEECCCC---------CCCHHHHHHHHhc--CCceEEEEEEeeccccceEEEEEEc-chHHhHHHHHhcCc
Confidence            578899996         5688999999999  7664 47777899999999999994 56666777766544
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure