Citrus Sinensis ID: 008202

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
Protein Sequence
MTTSFGAANTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQLI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHccccccccccccEEEEEEEEEEccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHcccEEccccccHHHHcccccccHHHHHHHHHHHcccHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHccccccccccccHHHHHHcccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEcccccEEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEHHcccHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccEEEEEEEcccccccHHHHHHHHHHHHHcccEEEcccccEEEcccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccEEEEEcccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHcccccccEEccccccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHccHccccHHHHHccccccccHcccEEEEEccccccccHHHHHHHHHEEEEEEccccccccHHHHHHHHHHHHHHcccEEEEEccHHHEEcccccHcHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEcccEEcccccHHHHHHHHccccccccccccccccccccccccEEEEEEEccccccEEEEccccEEEEEcccccEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHcHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHcccEEEccccEEEEEcccHHHHHHHHHHHHHccccccccccHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHEcccccccEEEEEEc
Coil and Loop (DISEMBL)
mttsfgaantvipnnpnirirsfnglkpshslsirtnlrafpvpyasrssvvravstpvkpetetktetKRSKVEIIKEQSnfiryplneelltdapnvnESATQLIKFHGSyqqynrdergaKSYSFMLrtknpcgkvsnqlYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMgstlgacgdlnrnvlappaplvrkdYLFAQKTAENIAALltpqsgfyydmwvdgeqimtaeppevvkarndnshgtnfpdspepiygtqflprkFKVAvtvptdnsvdiltndIGVVvvsdengepqgfnlyvgggmgrthrlettfprlgeqlgyvpkeDILYAVKAIVVTQrengrrddrkySRMKYLISSWGIEKFRSVVEQYygkkfepfrqlpewefkshlgwheqgdgglfcglhvdngrIAGKMKKTLREIIEKYNlnvritpnqnIILCDIRKAWKRPITTALAQAGlllpryvdplnitamacpslplcplaiteaeRGIPDILKRIRAVFEKVGLKYNESVVIRVtgcpngcarpymaelglvgdgpnsyQVFQLI
Flexible Loop (DISEMBL)
mttsfgaantvipnnpniriRSFNGLKPSHSLSIRTNLRAfpvpyasrssvvravstpvkpetetktetkrskveiikeqsnfirYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTtrqtfqlhgvlkkdlKTVMRSIIRSMGstlgacgdlnRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVptdnsvdiltNDIGVVvvsdengepQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIvvtqrengrrddrkysRMKYlisswgiekfRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKynlnvritpnqNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKvglkynesvVIRVTGCPNGCARPYMAELglvgdgpnSYQVFQLI
Low Complexity Region (SEG)
MTTSFGAANTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYasrssvvravstpvkpetetktetkrskveIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGtlrlttrqtfqlHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQLI
Disordered region (IsUnstruct)
*****************IRIRSF*********SIRTNLRAFPVPY*******************************I**QSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRD*RGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIM**************************IYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENG***DRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQV****
Disordered Region (DISOPRED)
**************************************************************************EIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQLI
Disordered Region (DISEMBL)
MTTSFGAANTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYASR***********************SKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQLI
Disordered Region (DISPRO)
****FGAANTVIPNNPNIRIRSFNGLKPS*******************SSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTTSFGAANTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQLI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	574	2.2.26 [Sep-21-2011]
Q9AWB2	573	Sulfite reductase [ferred	no	no	0.986	0.987	0.834	0.0
O82802	693	Sulfite reductase 1 [ferr	N/A	no	0.989	0.819	0.810	0.0
Q9LZ66	642	Sulfite reductase [ferred	yes	no	0.987	0.883	0.807	0.0
Q75NZ0	685	Sulfite reductase [ferred	N/A	no	0.986	0.826	0.817	0.0
O23813	635	Sulfite reductase [ferred	N/A	no	0.932	0.842	0.779	0.0
P72854	635	Sulfite reductase [ferred	N/A	no	0.885	0.8	0.522	1e-158
P30008	624	Sulfite reductase [ferred	yes	no	0.879	0.809	0.508	1e-153
B8CJV9	565	Sulfite reductase [NADPH]	yes	no	0.844	0.858	0.395	1e-101
A4Y9Z3	565	Sulfite reductase [NADPH]	yes	no	0.844	0.858	0.391	1e-100
Q0HFL7	565	Sulfite reductase [NADPH]	yes	no	0.844	0.858	0.393	1e-99

>sp|Q9AWB2|SIR_SOYBN Sulfite reductase [ferredoxin], chloroplastic (Fragment) OS=Glycine max GN=SIR PE=1 SV=1

 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/573 (83%), Positives = 528/573 (92%), Gaps = 7/573 (1%)

Query: 1   MTTSFGAANTVIP-NNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYASRS-SVVRAVSTP 58
           MTTSFG A T  P  +  ++I SF+GL+ S + ++  N  A  +P ++RS S++RAVSTP
Sbjct: 1   MTTSFGPATTSAPLKDHKVQIPSFHGLRSSSASALPRN--ALSLPSSTRSLSLIRAVSTP 58

Query: 59  VKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNR 118
            + ET T    KRSKVEI KEQSNFIRYPLNE++LTDAPN++E+ATQLIKFHGSYQQYNR
Sbjct: 59  AQSETAT---VKRSKVEIFKEQSNFIRYPLNEDILTDAPNISEAATQLIKFHGSYQQYNR 115

Query: 119 DERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLK 178
           +ERG++SYSFM+RTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLK
Sbjct: 116 EERGSRSYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLK 175

Query: 179 TVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDM 238
           TVM +IIR+MGSTLGACGDLNRNVLAP APL RKDYLFAQ+TAENIAALL PQSGFYYD+
Sbjct: 176 TVMGTIIRNMGSTLGACGDLNRNVLAPAAPLARKDYLFAQQTAENIAALLAPQSGFYYDI 235

Query: 239 WVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDIL 298
           WVDGE+I+T+EPPEVV+ARNDNSHGTNFPDSPEPIYGTQFLPRKFK+AVTVPTDNSVDIL
Sbjct: 236 WVDGEKILTSEPPEVVQARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDIL 295

Query: 299 TNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIV 358
           TNDIGVVVV+D++GEPQGFN+YVGGGMGRTHRLETTFPRL E +GYVPKEDILYAVKAIV
Sbjct: 296 TNDIGVVVVTDDDGEPQGFNIYVGGGMGRTHRLETTFPRLAEPIGYVPKEDILYAVKAIV 355

Query: 359 VTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHE 418
           VTQRENGRRDDRKYSR+KYLISSWGIEKFRSVVEQYYGKKFEPFR LPEWEFKS+LGWHE
Sbjct: 356 VTQRENGRRDDRKYSRLKYLISSWGIEKFRSVVEQYYGKKFEPFRALPEWEFKSYLGWHE 415

Query: 419 QGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTA 478
           QGDG LF GLHVDNGRI G MKKTLRE+IEKYNLNVRITPNQNIIL D+R AWKRPITT 
Sbjct: 416 QGDGKLFYGLHVDNGRIGGNMKKTLREVIEKYNLNVRITPNQNIILTDVRAAWKRPITTT 475

Query: 479 LAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNES 538
           LAQAGLL PR+VDPLNITAMACP+ PLCPLAITEAERGIP+ILKRIR VF+KVGLKY+ES
Sbjct: 476 LAQAGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPNILKRIRDVFDKVGLKYSES 535

Query: 539 VVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
           VV+R+TGCPNGCARPYMAELGLVGDGPNSYQ++
Sbjct: 536 VVVRITGCPNGCARPYMAELGLVGDGPNSYQIW 568

DNA-binding protein that binds to both double-stranded and single-stranded DNA without significant sequence specificity to reversibly repress the transcriptional activity of chloroplast nucleoids by promoting DNA compaction and possibly regulate DNA replication.
Glycine max (taxid: 3847)
EC: 1EC: .EC: 8EC: .EC: 7EC: .EC: 1

>sp|O82802|SIR1_TOBAC Sulfite reductase 1 [ferredoxin], chloroplastic OS=Nicotiana tabacum GN=SIR1 PE=1 SV=1

 Score =  984 bits (2545), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/576 (81%), Positives = 521/576 (90%), Gaps = 8/576 (1%)

Query: 1   MTTSFGAA-NTVIPNNPN--IRIRSFNGLKP-SHSLSIRTNLRAFPVPYASR-SSVVRAV 55
           MTTSFGAA N  + ++PN  ++I +F+GLK  S+SL +   L  F     S  SS+VRAV
Sbjct: 1   MTTSFGAAINIAVADDPNPKLQIHNFSGLKSTSNSLLLSRRLHVFQSFSPSNPSSIVRAV 60

Query: 56  STPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQ 115
           STP KP      E KRSKVEI KEQSNFIRYPLNEE+L DAPN+NE+ATQLIKFHGSY Q
Sbjct: 61  STPAKP---AAVEPKRSKVEIFKEQSNFIRYPLNEEILNDAPNINEAATQLIKFHGSYMQ 117

Query: 116 YNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKK 175
           Y+RDERG +SYSFMLRTKNP G+V N+LYL MDDLADQFGIGTLRLTTRQTFQLHGVLKK
Sbjct: 118 YDRDERGGRSYSFMLRTKNPGGEVPNRLYLVMDDLADQFGIGTLRLTTRQTFQLHGVLKK 177

Query: 176 DLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFY 235
           +LKTVM +II++MGSTLGACGDLNRNVLAP AP  +KDY+FA++TA+NIAALLTPQSGFY
Sbjct: 178 NLKTVMSTIIKNMGSTLGACGDLNRNVLAPAAPFAKKDYMFAKQTADNIAALLTPQSGFY 237

Query: 236 YDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSV 295
           YD+WVDGE++MTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFK+AVTVPTDNSV
Sbjct: 238 YDVWVDGEKVMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSV 297

Query: 296 DILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVK 355
           DI TNDIGVVVVS+E+GEPQGFN+YVGGGMGRTHR+ETTFPRL E LGYVPKEDILYAVK
Sbjct: 298 DIFTNDIGVVVVSNEDGEPQGFNIYVGGGMGRTHRMETTFPRLAEPLGYVPKEDILYAVK 357

Query: 356 AIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLG 415
           AIVVTQRENGRRDDR+YSR+KYL+SSWGIEKFRSV EQYYGKKF+P R+LPEWEFKS+LG
Sbjct: 358 AIVVTQRENGRRDDRRYSRLKYLLSSWGIEKFRSVTEQYYGKKFQPCRELPEWEFKSYLG 417

Query: 416 WHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPI 475
           WHE GDG LFCGLHVDNGR+ G MKK LRE+IEKYNLNVR+TPNQNIILC+IR+AWKRPI
Sbjct: 418 WHEAGDGSLFCGLHVDNGRVKGAMKKALREVIEKYNLNVRLTPNQNIILCNIRQAWKRPI 477

Query: 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKY 535
           TT LAQ GLL PRYVDPLN+TAMACP+ PLCPLAITEAERGIPDILKR+RA+FE+VGLKY
Sbjct: 478 TTVLAQGGLLQPRYVDPLNLTAMACPAFPLCPLAITEAERGIPDILKRVRAIFERVGLKY 537

Query: 536 NESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
           +ESVVIR+TGCPNGCARPYMAELGLVGDGPNSYQ++
Sbjct: 538 SESVVIRITGCPNGCARPYMAELGLVGDGPNSYQIW 573

DNA-binding protein that binds to both double-stranded and single-stranded DNA without significant sequence specificity to reversibly repress the transcriptional activity of chloroplast nucleoids by promoting DNA compaction and possibly regulate DNA replication.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 1

>sp|Q9LZ66|SIR_ARATH Sulfite reductase [ferredoxin], chloroplastic OS=Arabidopsis thaliana GN=SIR PE=1 SV=1

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/578 (80%), Positives = 514/578 (88%), Gaps = 11/578 (1%)

Query: 1   MTTSFGA---ANTVIPNNPNIRIRSFNGLKPSHSLSI----RTNLRAFPVPYASRSSVVR 53
           M+++F A   A TV   +  IR+   + L+ SHS+ +    R  +   P   +S SS ++
Sbjct: 1   MSSTFRAPAGAATVFTADQKIRLGRLDALRSSHSVFLGRYGRGGVPVPPSASSSSSSPIQ 60

Query: 54  AVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSY 113
           AVSTP KPET TK    RSKVEIIKE+SNFIRYPLNEELLT+APNVNESA QLIKFHGSY
Sbjct: 61  AVSTPAKPETATK----RSKVEIIKEKSNFIRYPLNEELLTEAPNVNESAVQLIKFHGSY 116

Query: 114 QQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVL 173
           QQYNR+ERG +SYSFMLRTKNP GKV NQLYLTMDDLAD+FGIGTLRLTTRQTFQLHGVL
Sbjct: 117 QQYNREERGGRSYSFMLRTKNPSGKVPNQLYLTMDDLADEFGIGTLRLTTRQTFQLHGVL 176

Query: 174 KKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSG 233
           K++LKTVM SII++MGSTLGACGDLNRNVLAP AP V+KDYLFAQ+TA+NIAALL+PQSG
Sbjct: 177 KQNLKTVMSSIIKNMGSTLGACGDLNRNVLAPAAPYVKKDYLFAQETADNIAALLSPQSG 236

Query: 234 FYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDN 293
           FYYDMWVDGEQ MTAEPPEVVKARNDNSHGTNF DSPEPIYGTQFLPRKFKVAVTVPTDN
Sbjct: 237 FYYDMWVDGEQFMTAEPPEVVKARNDNSHGTNFVDSPEPIYGTQFLPRKFKVAVTVPTDN 296

Query: 294 SVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYA 353
           SVD+LTNDIGVVVVSDENGEPQGFN+YVGGGMGRTHR+E+TF RL E +GYVPKEDILYA
Sbjct: 297 SVDLLTNDIGVVVVSDENGEPQGFNIYVGGGMGRTHRMESTFARLAEPIGYVPKEDILYA 356

Query: 354 VKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSH 413
           VKAIVVTQRE+GRRDDRKYSRMKYLISSWGIEKFR VVEQYYGKKFEP R+LPEWEFKS+
Sbjct: 357 VKAIVVTQREHGRRDDRKYSRMKYLISSWGIEKFRDVVEQYYGKKFEPSRELPEWEFKSY 416

Query: 414 LGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKR 473
           LGWHEQGDG  FCGLHVD+GR+ G MKKTLRE+IEKY ++VRITPNQNI+LCDI+  WKR
Sbjct: 417 LGWHEQGDGAWFCGLHVDSGRVGGIMKKTLREVIEKYKIDVRITPNQNIVLCDIKTEWKR 476

Query: 474 PITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGL 533
           PITT LAQAGLL P +VDPLN TAMACP+ PLCPLAITEAERGIP ILKR+RA+FEKVGL
Sbjct: 477 PITTVLAQAGLLQPEFVDPLNQTAMACPAFPLCPLAITEAERGIPSILKRVRAMFEKVGL 536

Query: 534 KYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
            Y+ESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQV+
Sbjct: 537 DYDESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVW 574

DNA-binding protein that binds to both double-stranded and single-stranded DNA without significant sequence specificity to reversibly repress the transcriptional activity of chloroplast nucleoids by promoting DNA compaction and possibly regulate DNA replication.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 1

>sp|Q75NZ0|SIR_PEA Sulfite reductase [ferredoxin], chloroplastic OS=Pisum sativum GN=SIR PE=1 SV=2

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/571 (81%), Positives = 520/571 (91%), Gaps = 5/571 (0%)

Query: 1   MTTSFGAANTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPVK 60
           MTTSF AA      +P ++I +++GL+ S + S  +            SS++RAVSTP K
Sbjct: 1   MTTSFAAAAL---RDPKLQIPNYHGLRSSSAASSLSRNALSVPSSTRSSSLIRAVSTPAK 57

Query: 61  PETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDE 120
             +ET TE KRSKVEI KEQSNFIRYPLNE++LTDAPN++E+ATQLIKFHGSYQQYNRDE
Sbjct: 58  --SETATEKKRSKVEIFKEQSNFIRYPLNEDMLTDAPNLSEAATQLIKFHGSYQQYNRDE 115

Query: 121 RGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTV 180
           RG+++YSFM+RTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGV+KKDLKTV
Sbjct: 116 RGSRTYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVVKKDLKTV 175

Query: 181 MRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWV 240
           M SIIR+MGS+LGACGDLNRNVLAP AP+V KDYLFAQ+T+ENIAALLTPQSGFYYD+WV
Sbjct: 176 MGSIIRNMGSSLGACGDLNRNVLAPAAPIVSKDYLFAQETSENIAALLTPQSGFYYDVWV 235

Query: 241 DGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTN 300
           DGE+ M+AEPPEV++ARNDNSHGTNF DSPEPIYGTQFLPRKFK+AVTVPTDNSVDILTN
Sbjct: 236 DGERFMSAEPPEVIQARNDNSHGTNFTDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTN 295

Query: 301 DIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVT 360
           DIGVVVV+ + GEPQGFNLYVGGGMGRTHR+ETTFPRL E LGYVPKEDILYAVKAIVVT
Sbjct: 296 DIGVVVVTGDGGEPQGFNLYVGGGMGRTHRMETTFPRLAEPLGYVPKEDILYAVKAIVVT 355

Query: 361 QRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQG 420
           QRENGRRDDR+YSRMKYLI SWGI+KFR+VVE+YYGKKFEPFR LPEWEFKS+LGWH+QG
Sbjct: 356 QRENGRRDDRRYSRMKYLIDSWGIDKFRNVVEEYYGKKFEPFRSLPEWEFKSYLGWHQQG 415

Query: 421 DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALA 480
           DGGLFCGLHVDNGRIAGKMK  LRE+IEKY+LNVR+TPNQN+IL DIR AWKRPITT L+
Sbjct: 416 DGGLFCGLHVDNGRIAGKMKTALREVIEKYHLNVRLTPNQNLILTDIRAAWKRPITTILS 475

Query: 481 QAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVV 540
           QAGLLLPRYVDPLNITAMACP+ PLCPLAITEAERGIP ILKRIR +FEKVGLKYNESVV
Sbjct: 476 QAGLLLPRYVDPLNITAMACPAFPLCPLAITEAERGIPSILKRIRDMFEKVGLKYNESVV 535

Query: 541 IRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
           +R+TGCPNGCARPYMAELGLVGDGPNSYQ++
Sbjct: 536 VRITGCPNGCARPYMAELGLVGDGPNSYQIW 566

DNA-binding protein that binds to both double-stranded and single-stranded DNA without significant sequence specificity to reversibly repress the transcriptional activity of chloroplast nucleoids by promoting DNA compaction and possibly regulate DNA replication.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 1

>sp|O23813|SIR_MAIZE Sulfite reductase [ferredoxin], chloroplastic OS=Zea mays GN=SIR PE=1 SV=1

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/539 (77%), Positives = 474/539 (87%), Gaps = 4/539 (0%)

Query: 34  IRTNLRAFPVPYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELL 93
           IR    A   P  + +  +RAVS P K +    +E KRSKVEIIKE+SNF+RYPLNEEL+
Sbjct: 30  IRVAPPAAARPGGASAGSIRAVSAPAKKDA---SEVKRSKVEIIKEKSNFLRYPLNEELV 86

Query: 94  TDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQ 153
           ++APN+NESA QLIKFHGSYQQ +RD RG K+YSFMLRTKNPCGKV NQLYL MD LAD+
Sbjct: 87  SEAPNINESAVQLIKFHGSYQQTDRDVRGQKNYSFMLRTKNPCGKVPNQLYLAMDTLADE 146

Query: 154 FGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKD 213
           FGIGTLRLTTRQTFQLHGVLKK+LKTV+ ++I++MGSTLGACGDLNRNVLAP AP V+KD
Sbjct: 147 FGIGTLRLTTRQTFQLHGVLKKNLKTVLSTVIKNMGSTLGACGDLNRNVLAPAAPYVKKD 206

Query: 214 YLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAE-PPEVVKARNDNSHGTNFPDSPEP 272
            LFAQ+TAENIAALLTPQSG YYD+WVDGE+IM+AE PPEV KARNDNSHGTNFPDSPEP
Sbjct: 207 ILFAQQTAENIAALLTPQSGAYYDLWVDGEKIMSAEEPPEVTKARNDNSHGTNFPDSPEP 266

Query: 273 IYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLE 332
           IYGTQ+LPRKFKVAVT   DNSVDILTNDIGVVVVSD+ GEP GFN+YVGGGMGRTHR+E
Sbjct: 267 IYGTQYLPRKFKVAVTAAGDNSVDILTNDIGVVVVSDDAGEPIGFNIYVGGGMGRTHRVE 326

Query: 333 TTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE 392
           TTFPRL + LGYVPKEDILYA+KAIVVTQRENGRRDDRKYSRMKY+I  WGI++FR+ VE
Sbjct: 327 TTFPRLADPLGYVPKEDILYAIKAIVVTQRENGRRDDRKYSRMKYMIDRWGIDRFRAEVE 386

Query: 393 QYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL 452
           +YYGKKFE FR LPEW+F S+LGW EQGDG LF G+HVDNGR+ G+ KKTLREIIEKYNL
Sbjct: 387 KYYGKKFESFRPLPEWQFNSYLGWQEQGDGKLFYGVHVDNGRVGGQAKKTLREIIEKYNL 446

Query: 453 NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITE 512
           +V ITPNQN+ILC I +AW+ PITTALAQAGLL P+ VDPLN+TAMACP+LPLCPLA TE
Sbjct: 447 DVSITPNQNLILCGIDQAWREPITTALAQAGLLEPKDVDPLNLTAMACPALPLCPLAQTE 506

Query: 513 AERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
           AERGI  ILKRIRAVF KVG+K +ESVV+R+TGCPNGCARPYMAELG VGDGP SYQ++
Sbjct: 507 AERGILPILKRIRAVFNKVGIKDSESVVVRITGCPNGCARPYMAELGFVGDGPKSYQIW 565

DNA-binding protein that binds to both double-stranded and single-stranded DNA without significant sequence specificity to reversibly repress the transcriptional activity of chloroplast nucleoids by promoting DNA compaction and possibly regulate DNA replication.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 1

>sp|P72854|SIR_SYNY3 Sulfite reductase [ferredoxin] OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sir PE=1 SV=1

 Score =  558 bits (1439), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/519 (52%), Positives = 364/519 (70%), Gaps = 11/519 (2%)

Query: 63  TETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDER- 121
           T T    K SKVE IKE+SN++R PL  ELL DA    + A Q++KFHGSYQQ NRD R 
Sbjct: 4   TPTAAPRKPSKVEGIKERSNYLREPLATELLNDANYFTDDAVQILKFHGSYQQDNRDNRV 63

Query: 122 --GAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKT 179
               K Y FMLRT+NP G +  QLY  +DDL+   G  TLR+TTRQ  Q+HG++KKDLK 
Sbjct: 64  KGQEKDYQFMLRTRNPGGLIPAQLYTALDDLSKTHGNQTLRVTTRQGLQIHGIVKKDLKM 123

Query: 180 VMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRK-DYLFAQKTAENIAALLTPQSGFYYDM 238
            + +++ ++GSTLGACGD+NRNV+AP AP   K +Y +A   A  +A LL+PQSG YY++
Sbjct: 124 AIATVVNNLGSTLGACGDINRNVMAPAAPFRDKPEYGYAWDYANKVADLLSPQSGAYYEI 183

Query: 239 WVDGEQIMTAE-PPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDI 297
           W+DGE++++ E  PEV  AR  + +GTN  D  EPIYG QF+PRKFK++VTVP DNS+D+
Sbjct: 184 WLDGEKVISGEEAPEVKAARQKDLNGTNLNDPKEPIYGQQFMPRKFKISVTVPGDNSIDV 243

Query: 298 LTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAI 357
            T+DI +VV++D +GE +GFN+  GGG+GRTH  E TF R  + +GYV K+D+   VKAI
Sbjct: 244 YTHDISLVVITDRHGELRGFNVLAGGGLGRTHNKEETFARAADPIGYVSKDDVYDLVKAI 303

Query: 358 VVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWH 417
           V TQR+ G R +R+++RMKYL++ WG+EKFR  VE Y GK F+ F+ LP W ++ +LGWH
Sbjct: 304 VATQRDYGDRHNRRHARMKYLLADWGVEKFRKQVETYMGKPFQSFKPLPAWRYQDYLGWH 363

Query: 418 EQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKR 473
           EQGDG LF GL V+NGRI      ++K  LR++++++ L +R+T N NI+L DI    K 
Sbjct: 364 EQGDGKLFFGLSVENGRIKDEGDFQLKTALRKVVDQFQLPLRLTANHNILLYDINAQDKA 423

Query: 474 PITTALAQAGLLL-PRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVG 532
            I     Q G++  P  +D L   +MACP+LP C LA+TE+ER +P +  R+R +   + 
Sbjct: 424 AIEQIFQQHGVVTDPEAIDTLVRYSMACPALPTCGLAVTESERIMPSVNARLRDLLNSLD 483

Query: 533 LKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
           L  NES+V R+TGCPNGCARPYMAE+G VG  PNSYQV+
Sbjct: 484 LP-NESIVTRMTGCPNGCARPYMAEIGFVGSAPNSYQVW 521

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 1

>sp|P30008|SIR_SYNE7 Sulfite reductase [ferredoxin] OS=Synechococcus elongatus (strain PCC 7942) GN=sir PE=3 SV=2

 Score =  541 bits (1395), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/515 (50%), Positives = 358/515 (69%), Gaps = 10/515 (1%)

Query: 65  TKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDER--- 121
           T    K SKVE +K +S ++  P+  +L  ++ + NE   Q++KFHGSYQQ NRD R   
Sbjct: 4   TAAPQKLSKVEDLKARSQYLLEPILSQLQEESTHFNEDGIQILKFHGSYQQDNRDNRVKG 63

Query: 122 GAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVM 181
             K + FMLR ++P G +  QLYLT+D LAD +G GTLR TTRQ FQLHG+LK+DLKTV+
Sbjct: 64  QEKDFQFMLRLRSPGGYIPPQLYLTLDQLADDYGNGTLRATTRQAFQLHGILKRDLKTVI 123

Query: 182 RSIIRSMGSTLGACGDLNRNVLAPPAPLV-RKDYLFAQKTAENIAALLTPQSGFYYDMWV 240
           R I+ ++GST+ ACGD+NRNV+APPAP   R +Y +A+  A NIA LLTP+SG YY++W+
Sbjct: 124 RRIVENLGSTISACGDVNRNVMAPPAPFRDRPEYEWARTYANNIADLLTPESGAYYELWL 183

Query: 241 DGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTN 300
           DGE++++ EP   V A   N  G    DS EP+Y  ++LPRKFK+AVTVP DNS+D+ T 
Sbjct: 184 DGEKVLSGEPDPAVLAARRNPKG-RVADSVEPLYSDRYLPRKFKIAVTVPGDNSIDLFTQ 242

Query: 301 DIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVT 360
           DIG+VV+ ++ GE +GFN+YVGGGMGRTH  E TF RL + LG+VP  DI  AV+AIV T
Sbjct: 243 DIGLVVIGNDRGELEGFNVYVGGGMGRTHNKEETFARLADPLGFVPAADIYAAVQAIVAT 302

Query: 361 QRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQG 420
           QR+ G R +R+++RMKYLI  WGI KF+  VE  +GK   P R+LP + ++ +LGWHEQG
Sbjct: 303 QRDYGDRSNRRHARMKYLIHDWGIAKFKEAVESVFGKAIAPVRELPPFRYRDYLGWHEQG 362

Query: 421 DGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPIT 476
           DG  F GL + +GRI      +++  LREI+ ++ L + +T +Q++++ D++   +  I 
Sbjct: 363 DGKWFLGLPITSGRIKDDGNWQLRSALREIVSRWQLPLLLTGSQDVLIYDVQPGDRAAID 422

Query: 477 TALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYN 536
             L   G+     +D L   AMACP+LP C LAITE+ER +P +L RIR + E+ GL  +
Sbjct: 423 KLLRDRGVHTVEAIDSLQRYAMACPALPTCGLAITESERALPGLLVRIRRLLEEQGLP-D 481

Query: 537 ESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
           E  V+R+TGCPNGCARPYMAEL  VG  PN+YQ++
Sbjct: 482 EHFVVRMTGCPNGCARPYMAELAFVGSAPNTYQLW 516

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 1

>sp|B8CJV9|CYSI_SHEPW Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=cysI PE=3 SV=1

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/518 (39%), Positives = 300/518 (57%), Gaps = 33/518 (6%)

Query: 67  TETKRSKVEIIKEQSNFIRYPLNEELLTDAPNV-NESATQLIKFHGSYQQYNRDERGAKS 125
           +E K +  E +K  S+++R  + E L T      +E   QLIKFHG YQQ +RD R  + 
Sbjct: 2   SEKKLAVNEYLKTDSDYLRGTIQEGLDTAVTGAFSEGDQQLIKFHGFYQQDDRDLRNERK 61

Query: 126 -------YSFMLRTKNPCGKVSNQLYLTMDDLADQF-GIGTLRLTTRQTFQLHGVLKKDL 177
                  YSFMLR +   G  S Q +L +DD+A       ++RLTTRQTFQ HG+ K++L
Sbjct: 62  EQKLEPLYSFMLRARVAGGVCSPQQWLAVDDIASNLTSSNSIRLTTRQTFQYHGIPKRNL 121

Query: 178 KTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYD 237
           KT+++ + R    ++ ACGD+NRNV+  P P+  K +  A   A+ ++  + P +  Y +
Sbjct: 122 KTIIQDLDREALDSIAACGDVNRNVMCNPNPVESKLHQQAYAYAKQLSDNMLPHTKAYAE 181

Query: 238 MWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDI 297
           +W+D E+++T E  EV                 EP+YG  +LPRKFK+AV VP DN VD+
Sbjct: 182 IWLDDEKLVTTEGEEV-----------------EPVYGKTYLPRKFKMAVAVPPDNDVDV 224

Query: 298 LTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAI 357
            TND+G V V++E GE  GFN+  GGGMG TH    TFPRL +  GY+  ED L   +A+
Sbjct: 225 YTNDLGFVAVAEE-GELVGFNMVAGGGMGSTHGEVATFPRLADDFGYIKAEDTLKFAEAV 283

Query: 358 VVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWH 417
           +  QR+ G R++RK SR+KY I   G + F++ VE+  G KFEP R +   +     GW 
Sbjct: 284 MTVQRDWGNRENRKLSRLKYTIVKHGYDAFKAEVEKRTGIKFEPKRDVVIGDRGDRYGWK 343

Query: 418 EQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKR 473
           +  D      L ++ GR+       ++  LREI + +  + R+T NQNII+  +  A K 
Sbjct: 344 QGVDDNWHLTLFIEGGRVKDLPGQPLQTGLREIAKIHQGDFRMTSNQNIIIAGVPAADKD 403

Query: 474 PITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGL 533
            I  ALA+   L+ + +      ++AC +LP C LA+ EAER  PD L ++ A+ +K G 
Sbjct: 404 KI-EALARQHGLMGKLITETRGHSIACVALPTCALAMAEAERYFPDFLTKVEALQDKHGF 462

Query: 534 KYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
             ++ +VIR+TGCPNGCARP+ AE+GLVG  P  Y ++
Sbjct: 463 -LDQGIVIRMTGCPNGCARPFAAEIGLVGKAPGRYNLY 499

Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate.

Shewanella piezotolerans (strain WP3 / JCM 13877) (taxid: 225849)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|A4Y9Z3|CYSI_SHEPC Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=cysI PE=3 SV=1

 Score =  366 bits (939), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/518 (39%), Positives = 301/518 (58%), Gaps = 33/518 (6%)

Query: 67  TETKRSKVEIIKEQSNFIRYPLNEELLTDAP-NVNESATQLIKFHGSYQQYNRDERGAKS 125
           +E K +  E +K  S+++R  + E L +    + ++   QLIKFHG YQQ +RD R  + 
Sbjct: 2   SEQKLALNEYLKTDSDYLRGTIKEGLDSSVTGSFSDGDQQLIKFHGFYQQDDRDLRNERK 61

Query: 126 -------YSFMLRTKNPCGKVSNQLYLTMDDLADQF-GIGTLRLTTRQTFQLHGVLKKDL 177
                  YSFMLR + P G  S Q +L +D +A       ++RLTTRQTFQ HG+ K++L
Sbjct: 62  EQKLEPLYSFMLRARVPGGICSPQQWLGVDKIASTLTSSNSIRLTTRQTFQYHGIPKRNL 121

Query: 178 KTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYD 237
           KT+++ + R    ++ ACGD+NRNV+  P P+  K +  A   A+ ++  L P +  Y +
Sbjct: 122 KTIIQDLDRQALDSIAACGDVNRNVMCNPNPVESKLHEQAYAVAKKLSDHLLPHTRAYAE 181

Query: 238 MWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDI 297
           +W+D E+++T E   V                 EP+YG  +LPRKFK+AV VP DN VD+
Sbjct: 182 IWLDEEKLLTTEDETV-----------------EPVYGKTYLPRKFKMAVAVPPDNDVDV 224

Query: 298 LTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAI 357
            TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++  ED++   +A+
Sbjct: 225 YTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAV 283

Query: 358 VVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWH 417
           +  QR+ G R +RK SR+KY I   G EKF++ VE   G KFEP R++   +     GW 
Sbjct: 284 MTVQRDWGNRSNRKRSRLKYTIVDHGYEKFKAEVEARAGVKFEPKREVVIGDRGDRYGWV 343

Query: 418 EQGDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKR 473
           E  DG     L +++GRI       ++  LREI + +  + R+T NQN+I+  +  A  +
Sbjct: 344 EGVDGKWHLTLFIESGRIKDLPGQTLQTGLREIAKIHKGDFRMTSNQNMIIAGV-AAEDK 402

Query: 474 PITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGL 533
                LA+   LL + +      ++AC +LP CPLA+ EAER  P+ +  I A+  K G+
Sbjct: 403 ATIEGLARKHGLLGQVLTQTRGHSIACVALPTCPLAMAEAERYFPEFIDHIDALQAKHGI 462

Query: 534 KYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
              +++V+R+TGCPNGCARP+ AE+GLVG  P  Y ++
Sbjct: 463 S-EQAIVVRMTGCPNGCARPFAAEIGLVGKAPGRYNLY 499

Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate.

Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) (taxid: 319224)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|Q0HFL7|CYSI_SHESM Sulfite reductase [NADPH] hemoprotein beta-component OS=Shewanella sp. (strain MR-4) GN=cysI PE=3 SV=1

 Score =  364 bits (934), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 204/518 (39%), Positives = 305/518 (58%), Gaps = 33/518 (6%)

Query: 67  TETKRSKVEIIKEQSNFIRYPLNEELLTDAP-NVNESATQLIKFHGSYQQYNRDERGAKS 125
           +E K +  E +K  S+++R  + E L +    + ++   QLIKFHG YQQ +RD R  + 
Sbjct: 2   SEQKLALNEYLKTDSDYLRGTIKEGLDSSVTGSFSDGDQQLIKFHGFYQQDDRDLRNERK 61

Query: 126 -------YSFMLRTKNPCGKVSNQLYLTMDDLADQF-GIGTLRLTTRQTFQLHGVLKKDL 177
                  YSFMLR + P G  + + +L +D++A       ++RLTTRQTFQ HG+ K++L
Sbjct: 62  EQKLEPLYSFMLRARVPGGVCTPKQWLGVDEIASTLTSSNSIRLTTRQTFQYHGIPKRNL 121

Query: 178 KTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYD 237
           KT+++ + R    ++ ACGD+NRNV+  P P+  K +  A + A+ ++  L P +  Y +
Sbjct: 122 KTIIQGLDREALDSIAACGDVNRNVMCNPNPVESKLHAQAYEVAKKLSDHLLPHTRAYAE 181

Query: 238 MWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDI 297
           +W+D E+++T E   V                 EP+YG  +LPRKFK+AV VP DN VD+
Sbjct: 182 IWLDEEKLLTTEDETV-----------------EPVYGKTYLPRKFKMAVAVPPDNDVDV 224

Query: 298 LTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAI 357
            TND+G + V+ ENGE  GFNL  GGGMG TH    TFPRL +  G++  ED++   +A+
Sbjct: 225 YTNDLGFIAVA-ENGELVGFNLTAGGGMGSTHGEVETFPRLADDFGFIKTEDVMKFAEAV 283

Query: 358 VVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWH 417
           +  QR+ G R +RK SR+KY I   G EKF++ VE   G KFEP R +   +     GW 
Sbjct: 284 MTVQRDWGNRTNRKRSRLKYTIVDHGYEKFKAEVEARAGVKFEPKRDVVIGDRGDRYGWV 343

Query: 418 EQGDGGLFCGLHVDNGRIA---GKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWKR 473
           E  DG     L +++GRI    GK  +T +REI + +  + R+T NQN+I+  +    K 
Sbjct: 344 EGVDGKWHLTLFIESGRIKDVPGKSLQTGMREIAKIHKGDFRMTSNQNMIIAGVAPEDKA 403

Query: 474 PITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGL 533
            I   LA+   LL + +      ++AC +LP CPLA+ EAER  P+ +  I A+  K G+
Sbjct: 404 TI-EGLARKHGLLGQVLTQTRGHSIACVALPTCPLAMAEAERYFPEFIDHIDALQAKNGI 462

Query: 534 KYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
             ++++V+R+TGCPNGCARP+ AE+GLVG  P  Y ++
Sbjct: 463 S-DQAIVVRMTGCPNGCARPFAAEIGLVGKAPGRYNLY 499

Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate.

Shewanella sp. (strain MR-4) (taxid: 60480)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 2

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23813	SIR_MAIZE	1, ., 8, ., 7, ., 1	0.7792	0.9320	0.8425	N/A	no
Q1D9W9	CYSI_MYXXD	1, ., 8, ., 1, ., 2	0.3820	0.8275	0.8451	yes	no
C0Z9X2	CYSI_BREBN	1, ., 8, ., 1, ., 2	0.3769	0.8397	0.8411	yes	no
B0TTE4	CYSI_SHEHH	1, ., 8, ., 1, ., 2	0.3841	0.8449	0.8584	yes	no
C6CXN6	CYSI_PAESJ	1, ., 8, ., 1, ., 2	0.3585	0.8344	0.8344	yes	no
B7JAM6	CYSI_ACIF2	1, ., 8, ., 1, ., 2	0.3762	0.8292	0.8454	yes	no
A8H094	CYSI_SHEPA	1, ., 8, ., 1, ., 2	0.3880	0.8449	0.8584	yes	no
Q49UL9	CYSI_STAS1	1, ., 8, ., 1, ., 2	0.3544	0.8536	0.8611	yes	no
B1KE86	CYSI_SHEWM	1, ., 8, ., 1, ., 2	0.3823	0.8310	0.8266	yes	no
A4IMT6	CYSI_GEOTN	1, ., 8, ., 1, ., 2	0.3554	0.8414	0.8429	yes	no
Q0HYB3	CYSI_SHESR	1, ., 8, ., 1, ., 2	0.3938	0.8449	0.8584	yes	no
Q8EB00	CYSI_SHEON	1, ., 8, ., 1, ., 2	0.3938	0.8449	0.8584	yes	no
B8EE51	CYSI_SHEB2	1, ., 8, ., 1, ., 2	0.3861	0.8449	0.8584	yes	no
A1RGD7	CYSI_SHESW	1, ., 8, ., 1, ., 2	0.3899	0.8449	0.8584	yes	no
Q9AWB2	SIR_SOYBN	1, ., 8, ., 7, ., 1	0.8342	0.9860	0.9877	no	no
B1HXC1	CYSI_LYSSC	1, ., 8, ., 1, ., 2	0.3564	0.8327	0.8356	yes	no
Q9LZ66	SIR_ARATH	1, ., 8, ., 7, ., 1	0.8079	0.9878	0.8831	yes	no
Q75NZ0	SIR_PEA	1, ., 8, ., 7, ., 1	0.8178	0.9860	0.8262	N/A	no
A8FZY7	CYSI_SHESH	1, ., 8, ., 1, ., 2	0.3812	0.8519	0.8594	yes	no
B1LS97	CYSI_METRJ	1, ., 8, ., 1, ., 2	0.3656	0.8710	0.8116	yes	no
Q1QU16	CYSI_CHRSD	1, ., 8, ., 1, ., 2	0.3747	0.8257	0.8243	yes	no
B5EQW2	CYSI_ACIF5	1, ., 8, ., 1, ., 2	0.3762	0.8292	0.8454	yes	no
B8CJV9	CYSI_SHEPW	1, ., 8, ., 1, ., 2	0.3957	0.8449	0.8584	yes	no
A4Y9Z3	CYSI_SHEPC	1, ., 8, ., 1, ., 2	0.3918	0.8449	0.8584	yes	no
Q07Y86	CYSI_SHEFN	1, ., 8, ., 1, ., 2	0.3745	0.8414	0.8579	yes	no
A3D829	CYSI_SHEB5	1, ., 8, ., 1, ., 2	0.3899	0.8449	0.8584	yes	no
Q4L9F1	CYSI_STAHJ	1, ., 8, ., 1, ., 2	0.3519	0.8362	0.8376	yes	no
B5Y1B5	CYSI2_KLEP3	1, ., 8, ., 1, ., 2	0.3820	0.8310	0.8457	yes	no
Q12QQ5	CYSI_SHEDO	1, ., 8, ., 1, ., 2	0.3648	0.8397	0.8576	yes	no
Q47UW8	CYSI_COLP3	1, ., 8, ., 1, ., 2	0.3613	0.8414	0.8270	yes	no
A6WJT5	CYSI_SHEB8	1, ., 8, ., 1, ., 2	0.3880	0.8449	0.8584	yes	no
B7GJU8	CYSI_ANOFW	1, ., 8, ., 1, ., 2	0.3457	0.8379	0.8423	yes	no
P30008	SIR_SYNE7	1, ., 8, ., 7, ., 1	0.5087	0.8797	0.8092	yes	no
Q5L041	CYSI_GEOKA	1, ., 8, ., 1, ., 2	0.3613	0.8414	0.8429	yes	no
Q3JBJ1	CYSI_NITOC	1, ., 8, ., 1, ., 2	0.3596	0.8519	0.8445	yes	no
O82802	SIR1_TOBAC	1, ., 8, ., 7, ., 1	0.8107	0.9895	0.8196	N/A	no
A3QAP0	CYSI_SHELP	1, ., 8, ., 1, ., 2	0.3927	0.8379	0.8513	yes	no
Q0HFL7	CYSI_SHESM	1, ., 8, ., 1, ., 2	0.3938	0.8449	0.8584	yes	no
A0KTH5	CYSI_SHESA	1, ., 8, ., 1, ., 2	0.3938	0.8449	0.8584	yes	no
A9L2P8	CYSI_SHEB9	1, ., 8, ., 1, ., 2	0.3899	0.8449	0.8584	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.1	0.766
4th Layer	1.8.1.2	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.I.1513.1	sulfite reductase (EC-1.8.7.1) (634 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_VIII001376	O-acetylserine (thiol) lyase (EC-2.5.1.47) (325 aa)						•	•		0.915
	grail3.1757000202	O-acetylserine (thiol) lyase (EC-2.5.1.47) (326 aa)						•	•		0.914
	eugene3.00130338	RecName- Full=Cysteine synthase; EC=2.5.1.47; (326 aa)						•	•		0.914
	estExt_fgenesh4_pg.C_700106	O-acetylserine (thiol) lyase (EC-2.5.1.47) (325 aa)						•	•		0.914
	gw1.142.135.1	hypothetical protein (336 aa)						•	•		0.914
	eugene3.00700113	hypothetical protein (320 aa)						•	•		0.913
	eugene3.00700110	hypothetical protein (331 aa)						•	•		0.913
	eugene3.00700109	hypothetical protein (324 aa)						•	•		0.912
	gw1.XIV.1323.1	cysteine synthase/L-3-cyanoalanine synthase (EC-4.4.1.9) (342 aa)						•	•		0.911
	grail3.0039007102	RecName- Full=Cysteine synthase; EC=2.5.1.47; (375 aa)						•	•		0.910

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	574
PLN00178	623	PLN00178, PLN00178, sulfite reductase	0.0
TIGR02042	577	TIGR02042, sir, ferredoxin-sulfite reductase	0.0
PRK13504	569	PRK13504, PRK13504, sulfite reductase subunit beta	0.0
TIGR02041	541	TIGR02041, CysI, sulfite reductase (NADPH) hemopro	1e-140
COG0155	510	COG0155, CysI, Sulfite reductase, beta subunit (he	1e-135
pfam01077	154	pfam01077, NIR_SIR, Nitrite and sulphite reductase	1e-39
PRK09566	513	PRK09566, nirA, ferredoxin-nitrite reductase; Revi	2e-39
PRK09567	593	PRK09567, nirA, ferredoxin-nitrite reductase; Revi	3e-34
PLN02431	587	PLN02431, PLN02431, ferredoxin--nitrite reductase	3e-25
TIGR02435	390	TIGR02435, CobG, precorrin-3B synthase	8e-18
pfam03460	67	pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase	1e-13
pfam03460	67	pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase	2e-12
COG2221	317	COG2221, DsrA, Dissimilatory sulfite reductase (de	1e-08
COG2221	317	COG2221, DsrA, Dissimilatory sulfite reductase (de	3e-08
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	5e-06
pfam01077	154	pfam01077, NIR_SIR, Nitrite and sulphite reductase	0.002

>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase

 Score = 1110 bits (2874), Expect = 0.0
 Identities = 433/552 (78%), Positives = 475/552 (86%), Gaps = 2/552 (0%)

Query: 20  IRSFNGLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKE 79
             S   L  +   +  T     P    S   V+RAV+TPVK  T      KRSKVEIIKE
Sbjct: 4   SSSAVSLLLARQSAATTAFSTGPSRSRSGRLVIRAVATPVKKPT--TEPPKRSKVEIIKE 61

Query: 80  QSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKV 139
            SNF+R+PLNEEL T+APN+NE A QLIKFHGSYQQ NR++RG K+Y FMLRTK P GKV
Sbjct: 62  NSNFLRHPLNEELATEAPNINEDAVQLIKFHGSYQQDNREKRGGKAYQFMLRTKQPAGKV 121

Query: 140 SNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLN 199
            N+LYL MDDLAD+FGIGTLRLTTRQTFQLHGVLKKDLKTVM SII++MGSTLGACGD+N
Sbjct: 122 PNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGVLKKDLKTVMSSIIKNMGSTLGACGDVN 181

Query: 200 RNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARND 259
           RNVLAP AP  RKDYLFAQ+ A+NIAALL PQSG YYD+WVDGE+IM+AEPPEV KARND
Sbjct: 182 RNVLAPAAPFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARND 241

Query: 260 NSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNL 319
           NSHGTNF DSPEPIYGTQFLPRKFK+AVTVP DNSVDILTNDIGVVVVSDE GEPQG+N+
Sbjct: 242 NSHGTNFEDSPEPIYGTQFLPRKFKIAVTVPGDNSVDILTNDIGVVVVSDEAGEPQGYNI 301

Query: 320 YVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLI 379
           YVGGGMGRTHR ETTFPRL + LGYVPKEDILYAVKAIV TQR+ GRRDDRK SRMKYL+
Sbjct: 302 YVGGGMGRTHRNETTFPRLADPLGYVPKEDILYAVKAIVATQRDYGRRDDRKQSRMKYLV 361

Query: 380 SSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKM 439
            SWGIEKFRSVVEQYYGKKFEPFR+LPEWEFKS+LGWHEQGDG LF G+HVDNGRI G+ 
Sbjct: 362 HSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSYLGWHEQGDGKLFYGVHVDNGRIKGEA 421

Query: 440 KKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMA 499
           KK LRE+IEKYNL VR+TPNQN+ILCDIR AWK PIT ALA AGLL P  VDPLN TAMA
Sbjct: 422 KKALREVIEKYNLPVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPLNRTAMA 481

Query: 500 CPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELG 559
           CP+LPLCPLAITEAERGIPDILKR+RA+F KVGLKY+ESVV+R+TGCPNGCARPYMAELG
Sbjct: 482 CPALPLCPLAITEAERGIPDILKRVRAMFNKVGLKYDESVVVRMTGCPNGCARPYMAELG 541

Query: 560 LVGDGPNSYQVF 571
            VGDGPNSYQ++
Sbjct: 542 FVGDGPNSYQIW 553

Length = 623

>gnl|CDD|131097 TIGR02042, sir, ferredoxin-sulfite reductase

 Score =  953 bits (2466), Expect = 0.0
 Identities = 357/511 (69%), Positives = 424/511 (82%), Gaps = 10/511 (1%)

Query: 70  KRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGA---KSY 126
           KRSKVEI+KE+SNF+R PLNE+LL +A + NE A Q++KFHGSYQQ NRD RG    K Y
Sbjct: 5   KRSKVEILKERSNFLREPLNEQLLEEATHFNEDAVQILKFHGSYQQDNRDNRGKGQEKDY 64

Query: 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR 186
            FMLRTKNP G V  QLYLT+DDLAD++G GTLR TTRQTFQLHG+LKK+LKTV+ +I++
Sbjct: 65  QFMLRTKNPGGYVPPQLYLTLDDLADEYGNGTLRATTRQTFQLHGILKKNLKTVISTIVK 124

Query: 187 SMGSTLGACGDLNRNVLAPPAPLVRK-DYLFAQKTAENIAALLTPQSGFYYDMWVDGEQI 245
           ++GSTLGACGDLNRNV+APPAP  ++ +Y FA++ A+NIA LLTPQSG YY++W+DGE++
Sbjct: 125 NLGSTLGACGDLNRNVMAPPAPFRKRPEYEFAREYADNIADLLTPQSGAYYELWLDGEKV 184

Query: 246 MTAEP-PEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGV 304
           M+AEP PEVV ARNDNSHGTNF DSPEP+YGTQ+LPRKFK+AVTVP DNS+D+ T DIG+
Sbjct: 185 MSAEPDPEVVAARNDNSHGTNFADSPEPLYGTQYLPRKFKIAVTVPGDNSIDLFTQDIGL 244

Query: 305 VVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQREN 364
           VVVS+E GE +GFN+YVGGGMGRTH  E TF RL + LGYVPKEDI YAVKAIV TQR+ 
Sbjct: 245 VVVSNERGELEGFNIYVGGGMGRTHNKEETFARLADPLGYVPKEDIYYAVKAIVATQRDY 304

Query: 365 GRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGL 424
           G RDDR+++RMKYLIS WGIEKFR VVEQY+GKK  P R+LPE+E+K +LGWHEQGDG  
Sbjct: 305 GDRDDRRHARMKYLISDWGIEKFREVVEQYFGKKIAPVRELPEFEYKDYLGWHEQGDGKW 364

Query: 425 FCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALA 480
           F GLH+D+GR+       +KK LREI+EKYNL VR+TPNQNIIL DI+  WKR ITT LA
Sbjct: 365 FLGLHIDSGRVKDDGNWQLKKALREIVEKYNLPVRLTPNQNIILYDIQPEWKRAITTVLA 424

Query: 481 QAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVV 540
           Q G+L P  +DPLN  AMACP+LP C LAITE+ER IP ILKRIRA+ EKVGL  +E  V
Sbjct: 425 QRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRALLEKVGLP-DEHFV 483

Query: 541 IRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
           +R+TGCPNGCARPYMAELG VG  PNSYQV+
Sbjct: 484 VRMTGCPNGCARPYMAELGFVGSAPNSYQVW 514

Distantly related to the iron-sulfur hemoprotein of sulfite reductase (NADPH) found in Proteobacteria and Eubacteria, sulfite reductase (ferredoxin) is a cyanobacterial and plant monomeric enzyme that also catalyzes the reduction of sulfite to sulfide [Central intermediary metabolism, Sulfur metabolism]. Length = 577

>gnl|CDD|237402 PRK13504, PRK13504, sulfite reductase subunit beta; Provisional

 Score =  709 bits (1832), Expect = 0.0
 Identities = 229/517 (44%), Positives = 315/517 (60%), Gaps = 31/517 (5%)

Query: 67  TETKRSKVEIIKEQSNFIRYPLNEELLTDA-PNVNESATQLIKFHGSYQQYNRDERGA-- 123
            E K S VE IK +SN++R  + EEL        +E   QL+KFHGSYQQ +RD R    
Sbjct: 7   VEGKLSDVERIKLESNYLRGTIAEELNDGLTGGFSEDDFQLLKFHGSYQQDDRDIRAERA 66

Query: 124 -----KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLK 178
                 +Y FMLR + P G ++ Q +L +D LAD++G GTLRLTTRQTFQ HG+LKK+LK
Sbjct: 67  EQKLEPAYQFMLRCRLPGGVITPQQWLALDKLADEYGNGTLRLTTRQTFQFHGILKKNLK 126

Query: 179 TVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDM 238
            V+++I   +  TL ACGD+NRNV+  P P   + +  A + A+ I+  L P++  Y ++
Sbjct: 127 PVIQTINSVLLDTLAACGDVNRNVMCTPNPYESRLHAEAYEWAKKISDHLLPRTRAYAEI 186

Query: 239 WVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDIL 298
           W+DGE++ T    E                  EPIYG  +LPRKFK+AV VP DN VD+ 
Sbjct: 187 WLDGEKVATFSGTEE-----------------EPIYGKTYLPRKFKIAVAVPPDNDVDVY 229

Query: 299 TNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIV 358
            ND+G V ++ ENG+  GFN+ VGGGMG TH  + T+PRL ++LGYVP ED+L   +A+V
Sbjct: 230 ANDLGFVAIA-ENGKLVGFNVLVGGGMGMTHGDKETYPRLADELGYVPPEDVLDVAEAVV 288

Query: 359 VTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHE 418
            TQR+ G R DRK +R+KY +   G++ F++ VE+  GKK EP R          LGW E
Sbjct: 289 TTQRDYGNRTDRKNARLKYTLERVGLDWFKAEVERRAGKKLEPARPYEFTGRGDRLGWVE 348

Query: 419 QGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRP 474
             DG     L ++NGRI       +K  LREI + +  + R+T NQN+I+ ++  + K  
Sbjct: 349 GIDGKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHKGDFRLTANQNLIIANVPPSDKAK 408

Query: 475 ITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLK 534
           I   L + GL+      PL   +MAC +LP C LA+ EAER +P  + RI A+  K GL 
Sbjct: 409 IEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLS 468

Query: 535 YNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
            +E +VIR+TGCPNGCARPY+AE+GLVG  P  Y ++
Sbjct: 469 -DEHIVIRMTGCPNGCARPYLAEIGLVGKAPGRYNLY 504

Length = 569

>gnl|CDD|131096 TIGR02041, CysI, sulfite reductase (NADPH) hemoprotein, beta-component

 Score =  417 bits (1074), Expect = e-140
 Identities = 201/509 (39%), Positives = 295/509 (57%), Gaps = 40/509 (7%)

Query: 75  EIIKEQSNFIRYPLNEELLTDAPN-VNESATQLIKFHGSYQQYNRDERGAKS-------Y 126
           E IKE+SN++R  L E L        +    QLIKFHG YQQ +RD R  ++       Y
Sbjct: 1   ERIKEESNYLRGTLLESLADPLTGGFSGDDFQLIKFHGMYQQDDRDLRAERAEQKLEPAY 60

Query: 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR 186
            FMLR + P G ++ + +L +D  A ++G G++RLTTRQTFQ HG+LK++LK V ++I  
Sbjct: 61  QFMLRCRLPGGVITPKQWLAIDKFAREYGNGSIRLTTRQTFQFHGILKRNLKAVHQAIHS 120

Query: 187 SMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIM 246
           +   ++  CGD+NRNVL    P   + +  A + A+ I+  L P++  Y+++W+D +++ 
Sbjct: 121 AGLDSIATCGDVNRNVLCTSNPYESELHQEAYEWAKKISEHLLPRTRAYHEIWLDEKKVA 180

Query: 247 TAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVV 306
             E                     EPIYG  +LPRKFK  V +P  N VD+  ND+G V 
Sbjct: 181 GTE-------------------EVEPIYGPTYLPRKFKTGVVIPPINDVDVYANDLGFVA 221

Query: 307 VSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGR 366
           ++D NG+  GFN+ +GGG+G TH  + T+PRL  ++G++P E  L   +AIV TQR+ G 
Sbjct: 222 IAD-NGKLIGFNVLIGGGLGMTHGNKATYPRLANEIGFIPPEHTLAVAEAIVTTQRDFGN 280

Query: 367 RDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSH---LGWHEQGDGG 423
           R DRK +R KY I   G++ F++ VE+  G   EP R    + F       GW +  DG 
Sbjct: 281 RTDRKNARTKYTIDRMGLDTFKAEVERRAGITLEPAR---PYVFTHRGDRYGWVKGIDGN 337

Query: 424 LFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTAL 479
               L +++GRIA      +   LREI + +  + RITPNQN+I+ ++ +  K  I    
Sbjct: 338 WHLTLFIESGRIADYPDKPLMTGLREIAKIHKGDFRITPNQNLIIANVPEGGKAKIEALA 397

Query: 480 AQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESV 539
            Q GL+  +    L   +MAC +LP CPLA+ EAER +PD + ++  + EK GL  +E +
Sbjct: 398 RQYGLIDGKVT-ALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKHGLA-DEEI 455

Query: 540 VIRVTGCPNGCARPYMAELGLVGDGPNSY 568
           V+R+TGCPNGC RPY+AE+GLVG  P  Y
Sbjct: 456 VLRMTGCPNGCGRPYLAEIGLVGKAPGRY 484

Sulfite reductase (NADPH) catalyzes a six electron reduction of sulfite to sulfide in prokaryotic organisms. It is a complex oligomeric enzyme composed of two different peptides with a subunit composition of alpha(8)-beta(4). The alpha component, encoded by cysJ, is a flavoprotein containing both FMN and FAD, while the beta component, encoded by cysI, is a siroheme, iron-sulfur protein. In Salmonella typhimurium and Escherichia coli, both the alpha and beta subunits of sulfite reductase are located in a unidirectional gene cluster along with phosphoadenosine phosphosulfate reductase, which catalyzes a two step reduction of PAPS to give free sulfite. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide [Central intermediary metabolism, Sulfur metabolism]. Length = 541

>gnl|CDD|223233 COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]

 Score =  402 bits (1035), Expect = e-135
 Identities = 178/508 (35%), Positives = 250/508 (49%), Gaps = 63/508 (12%)

Query: 67  TETKRSKVEIIKEQSNFIRYPLNEELLTDA-PNVNESATQL-IKFHGSYQQYNRDERGAK 124
                   E +K +SNF+R  + ++L       + E   +  +KF G Y Q         
Sbjct: 2   APYDPLDNERLKAESNFLRGTIEDQLSDRLSGGLCEDDFRPLLKFDGLYLQ-------EP 54

Query: 125 SYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI 184
            ++FMLR + P G +S +    + D+A ++G GT+ LTTRQ  Q HG+ KKD+  ++  +
Sbjct: 55  DHAFMLRVRIPGGILSPKQLRALADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAEL 114

Query: 185 IRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQ 244
                 T+   GD+ RNV   P          A   A+ IA            +W+DGE 
Sbjct: 115 ASVGLHTIATAGDVARNVTGDP---------LAGLDADEIADPRPLAE--ILRIWLDGE- 162

Query: 245 IMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGV 304
                                         G  +LPRKFK+AV    DN VD+L NDIG 
Sbjct: 163 -----------------------------KGFAYLPRKFKIAVDGGPDNDVDVLINDIGF 193

Query: 305 VVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQREN 364
           V + + +G   GFN+ VGGG+GRTH    T PRL E +     ED+L  V+AIV   R+ 
Sbjct: 194 VAIKENDGLL-GFNVLVGGGLGRTHPK--TAPRLAEFVPP---EDVLEVVEAIVRVYRDY 247

Query: 365 GRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGL 424
           GRR +RK +R+KYL+ + G+EKFR  VE   GK FEP R         H+GW  Q DG  
Sbjct: 248 GRRANRKKARLKYLVEALGVEKFRREVEPRLGKPFEPARPREFTGNGDHIGWVPQKDGLW 307

Query: 425 FCGLHVDNGRI-AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAG 483
             GL V NGR+ A  +     E  E     +R+TPNQN+I+ ++ +A    I   LA  G
Sbjct: 308 HLGLAVPNGRLKAEGLIPLATEAEEIGFGEIRLTPNQNLIIPNVPEAELEAILRILAALG 367

Query: 484 LLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRV 543
           L+       L   ++AC  LP C LA+ E ER  P I+ R     E +  K+   + + +
Sbjct: 368 LVTA--PSSLRRNSIACVGLPTCALALAETERDAPRIIAR----LEDLLDKHGLPITLHI 421

Query: 544 TGCPNGCARPYMAELGLVGDGPNSYQVF 571
           +GCPNGC RP++AE+GLVG     YQV+
Sbjct: 422 SGCPNGCGRPHLAEIGLVGKAKGGYQVY 449

Length = 510

>gnl|CDD|216287 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain

 Score =  141 bits (357), Expect = 1e-39
 Identities = 60/176 (34%), Positives = 84/176 (47%), Gaps = 27/176 (15%)

Query: 224 IAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKF 283
                 P +G   +  +D   +  A   E+                 E  YG   LPRKF
Sbjct: 6   RNVTSCPGAGLCPEELIDTRPLAKALEDEL-----------------EDEYGFPDLPRKF 48

Query: 284 KVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG 343
           K+AV+   ++ V    NDIG +    + GE  GFN+ VGGG+GRT     T        G
Sbjct: 49  KIAVSGCPNDCVAAHANDIGFIGTEKDGGEI-GFNILVGGGLGRTPGAAATLAV-----G 102

Query: 344 YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKF 399
           +VP+ED+L  ++AI+   R    R +RK  R+KYLI   G+EKFR  VE+  G+K 
Sbjct: 103 FVPEEDVLEVIEAILEVYR----RTNRKKERLKYLIERLGLEKFREEVEERLGQKL 154

Sulphite and nitrite reductases are vital in the biosynthetic assimilation of sulphur and nitrogen, respectfully. They are also both important for the dissimilation of oxidized anions for energy transduction. Length = 154

>gnl|CDD|236572 PRK09566, nirA, ferredoxin-nitrite reductase; Reviewed

 Score =  150 bits (382), Expect = 2e-39
 Identities = 127/457 (27%), Positives = 201/457 (43%), Gaps = 90/457 (19%)

Query: 128 FMLRTKNPCGKVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR 186
           FMLR + P G ++++    +  +  ++G  G+  +TTRQ  QL G+L +DL  ++     
Sbjct: 66  FMLRLRVPNGILTSEQLRVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNR--- 122

Query: 187 SMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIM 246
                L A G                              L + QSG      + G  + 
Sbjct: 123 -----LKAVG------------------------------LTSVQSGMDNVRNITGSPVA 147

Query: 247 TAEPPEVVKAR----------NDNSHGTNFPDSPEPIYGTQF--LPRKFKVAVTVPTDNS 294
             +P E++  R           +N  G     +PE      F  LPRKF +A+    DNS
Sbjct: 148 GIDPDELIDTRPLTQKLQDMLTNNGEG-----NPE------FSNLPRKFNIAIAGGRDNS 196

Query: 295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL-GYVPKEDILYA 353
           V    NDI  V          GFN+ VGG    + R     P     L  +V  ++++  
Sbjct: 197 VHAEINDIAFVPA--YKDGVLGFNVLVGGFFS-SQRCAYAIP-----LNAWVKPDEVVRL 248

Query: 354 VKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEP--FRQLPEWEFK 411
            +AI+   R+NG R +R+  R+ +LI  WGIEKFR+ VE  +G            +WE +
Sbjct: 249 CRAILEVYRDNGLRANRQKGRLMWLIDEWGIEKFRAAVEAQFGPPLLTAAPGDEIDWEKR 308

Query: 412 SHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDIRK 469
            H+G H Q   GL + GLHV  GR+  +    L  + E Y +  +R+T  QN+I+ +I  
Sbjct: 309 DHIGVHPQKQAGLNYVGLHVPVGRLYAEDMFELARLAEVYGSGEIRLTVEQNVIIPNIPD 368

Query: 470 AWKRPITTALAQAGLLLPRY-VDPLNITA--MACPSLPLCPLAITEA-ERGIPDILKRIR 525
                + T LA+   LL ++ ++P  +    ++C     C  A+ E   R     L   +
Sbjct: 369 E---NLETFLAEP--LLQKFSLEPGPLARGLVSCTGNQYCNFALIETKNRA----LALAK 419

Query: 526 AVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
            +  ++ L   + V I  TGCPN C +P +A++GL+G
Sbjct: 420 ELDAELDLP--QPVRIHWTGCPNSCGQPQVADIGLMG 454

Length = 513

>gnl|CDD|236573 PRK09567, nirA, ferredoxin-nitrite reductase; Reviewed

 Score =  136 bits (345), Expect = 3e-34
 Identities = 122/457 (26%), Positives = 196/457 (42%), Gaps = 86/457 (18%)

Query: 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR 186
           S+M R + P G +++  +  + DLAD+ G G   +TTR   QL  +  +    V+  ++ 
Sbjct: 116 SYMCRLRIPNGILTHWQFAGLADLADRHGGGYSHVTTRANLQLREIPPEHAVPVLEGLV- 174

Query: 187 SMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQI 245
            +G +  G+  D  RNV   P                         +G       D +++
Sbjct: 175 DLGLTARGSGADNIRNVTGSPT------------------------AGI------DPQEL 204

Query: 246 MTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVA------VTVPTDNSVDILT 299
           +   P     AR  + H  N       +YG   LPRKF VA      +    D      T
Sbjct: 205 LDTRP----YAREWHHHILNDRS----LYG---LPRKFNVAFDGGGRIATLED------T 247

Query: 300 NDIG--VVVVSDENGEPQG--FNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAV- 354
           NDIG   V V +  G   G  F L +GG  G  H+    F R     G + + +   AV 
Sbjct: 248 NDIGFQAVRVLEGAGVAPGVYFRLVLGGITG--HK---DFAR---DTGVLLRPEEATAVA 299

Query: 355 KAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKF-----EPFRQLPEWE 409
            AIV    ENG R +RK +R+KY++ +WG +KF   VE+  G+       E     P  +
Sbjct: 300 DAIVRVFIENGDRTNRKKARLKYVLDAWGFDKFLEAVEEKLGRPLTRVPAEAVAPRPAAD 359

Query: 410 FKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDI 467
             +H+G H Q   GL + G+ +  GR+     + L +I  +Y +  +R+T  QN+++  +
Sbjct: 360 RFAHVGVHPQKQPGLNWIGVVLPVGRLTTDQMRGLAKIAARYGDGEIRLTVWQNLLISGV 419

Query: 468 RKAWKRPITTALAQAGLLLPRYVDPLNITA--MACPSLPLCPLAITEAERGIPDILKRIR 525
             A    +  A+   GL      +  +I A  +AC     C  A  + +      L    
Sbjct: 420 PDADVAAVEAAIEALGL----TTEASSIRAGLVACTGNAGCKFAAADTKG---HALAIAD 472

Query: 526 AVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
               +V L  ++ V I +TGC + CA+ Y+ ++GL+G
Sbjct: 473 YCEPRVAL--DQPVNIHLTGCHHSCAQHYIGDIGLIG 507

Length = 593

>gnl|CDD|178050 PLN02431, PLN02431, ferredoxin--nitrite reductase

 Score =  109 bits (274), Expect = 3e-25
 Identities = 147/591 (24%), Positives = 236/591 (39%), Gaps = 130/591 (21%)

Query: 25  GLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPV------------------KPETETK 66
            L  S S    + +RA     A+ ++V    +  V                  K E    
Sbjct: 15  TLLRSTSARRVSAVRAVEREVAAAATVSPPATAAVDADRLEPRVEERDGYWVLKEEFRKG 74

Query: 67  TETKRSKVEIIKEQSN-FIRYPLNEELLTDAPNVNESATQ----------LIKFHGSYQQ 115
               + KV++ KE    F+   + E   T    +++S             L  FH    Q
Sbjct: 75  I-NPQEKVKLEKEPMKLFMENGIEELAKTPFEEIDKSKLSKDDIDVRLKWLGLFHRRKHQ 133

Query: 116 YNRDERGAKSYSFMLRTKNPCGKV-SNQL-YLTMDDLADQFGI-GTLRLTTRQTFQLHGV 172
           Y R         FM+R K P G   S Q  YL    + +++G  G   +TTRQ +Q+ GV
Sbjct: 134 YGR---------FMMRLKLPNGVTTSAQTRYLA--SVIEKYGEDGCADVTTRQNWQIRGV 182

Query: 173 LKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQ 231
           +  D+  +++  +  +G ++L +  D  RN +  P                 +A      
Sbjct: 183 VLPDVPAILKG-LEEVGLTSLQSGMDNVRNPVGNP-----------------LAG----- 219

Query: 232 SGFYYDMWVDGEQIMTAEPPEVVKARND----NSHG----TNFPDSPEPIYGTQFLPRKF 283
                   +D  +I+   P       +D    N  G    TN P             RK+
Sbjct: 220 --------IDPHEIVDTRP--YTNLLSDYITNNGRGNPEITNLP-------------RKW 256

Query: 284 KVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG 343
            V V    D       ND+  +  + ++G   GFNL VGG      R     P L     
Sbjct: 257 NVCVVGSHDLFEHPHINDLAYMPAT-KDGR-FGFNLLVGGFFS-PKRCAEAIP-LD---A 309

Query: 344 YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYY-GKKFEPF 402
           +VP +D++   KAI+   R+ G R +R+ +RM +LI   G+E FRS VE+     + E  
Sbjct: 310 WVPADDVVPLCKAILEAFRDLGTRGNRQKTRMMWLIDELGVEGFRSEVEKRMPNGELERA 369

Query: 403 RQL----PEWEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRI 456
                   +WE + +LG H Q   GL + GLHV  GR+       L  + ++Y +  +R+
Sbjct: 370 ASEDLVDKKWERRDYLGVHPQKQEGLSYVGLHVPVGRLQAADMDELARLADEYGSGELRL 429

Query: 457 TPNQNIILCDIRKAWKRPITTALAQAGLLLPRY-VDPLNITA--MACPSLPLCPLAITEA 513
           T  QNII+ ++  +    +   LA+   LL R+  +P  +    +AC     C  AI E 
Sbjct: 430 TVEQNIIIPNVPNS---KVEALLAEP--LLQRFSPNPGLLLKGLVACTGNQFCGQAIIET 484

Query: 514 ERGIPDILKRIRAVFEKVG--LKYNESVVIRVTGCPNGCARPYMAELGLVG 562
           +        R   V E++   ++    V +  TGCPN C +  +A++G +G
Sbjct: 485 KA-------RALKVTEELERLVEVPRPVRMHWTGCPNSCGQVQVADIGFMG 528

Length = 587

>gnl|CDD|233866 TIGR02435, CobG, precorrin-3B synthase

 Score = 85.2 bits (211), Expect = 8e-18
 Identities = 87/452 (19%), Positives = 152/452 (33%), Gaps = 93/452 (20%)

Query: 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR 186
             ++R + P G+++    + + DLA++ G G + +T R   QL G+        +   + 
Sbjct: 17  GLLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGL--TADHDALSQALL 74

Query: 187 SMGSTLGACG---DLNRNVLAPPAPLVRKDYLF-AQKTAENIAALLTPQSGFYYDMWVDG 242
           + G  LGA G   D  RN+   P   +    +   +  A  + A L  +           
Sbjct: 75  AAG--LGAAGAAADDIRNIEVSPLAGIDPGEIADTRPLAAELRAALENERAL-------- 124

Query: 243 EQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDI 302
                                               LP KF VA+       +   T D+
Sbjct: 125 ----------------------------------LELPPKFSVAIDGGGRLVLLGDTADV 150

Query: 303 GVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQR 362
            +  ++   G     +L    G+  + R           L  V  +  +    A++    
Sbjct: 151 RLQALTTGAGVAWVVSL---AGISTSARS----------LVTVAPDAAVPVAVALLRVFV 197

Query: 363 ENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKS-----HLGWH 417
           E G       +R + L  ++       +VE    +   P     E    +      LG H
Sbjct: 198 ELGGA-----ARGRDLDDAFLFALALELVED--SRPLIPDAAEGEAPRPAVDAAAPLGLH 250

Query: 418 EQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLN-VRITPNQNIILCDIRKAWKRPIT 476
            QGD G+  G  +  G++     + L ++ +      +R+TP + +++  +         
Sbjct: 251 PQGDAGVTLGAGLALGQLTAAQLRGLAQLAQALGDGDLRLTPWRALLVLGLPPERADAAQ 310

Query: 477 TALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYN 536
            ALA  GL+     DP      AC   P C  A+ +  R   + L             Y 
Sbjct: 311 RALAALGLVTSAS-DPRARII-ACTGAPGCASALADT-RADAEALAA-----------YC 356

Query: 537 ESVV---IRVTGCPNGCARPYMAELGLVGDGP 565
           E      + ++GC  GCA P  A + LV  G 
Sbjct: 357 EPTAPITVHLSGCAKGCAHPGPAAITLVAAGA 388

An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 390

>gnl|CDD|217572 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like half domain

 Score = 65.6 bits (161), Expect = 1e-13
 Identities = 21/59 (35%), Positives = 39/59 (66%)

Query: 124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMR 182
           K   +M+R + P G+++ +    + D+A+++G G +RLTTRQ  +LHGV ++DL  ++ 
Sbjct: 4   KDGDYMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPALLE 62

Sulfite and Nitrite reductases are key to both biosynthetic assimilation of sulfur and nitrogen and dissimilation of oxidized anions for energy transduction. Two copies of this repeat are found in Nitrite and Sulfite reductases and form a single structural domain. Length = 67

>gnl|CDD|217572 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like half domain

 Score = 61.8 bits (151), Expect = 2e-12
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 417 HEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDIRKA 470
           H Q DG     + V  GR+  +  + L +I EKY +  +R+T  QN+ L  + + 
Sbjct: 1   HPQKDGDYMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEE 55

Sulfite and Nitrite reductases are key to both biosynthetic assimilation of sulfur and nitrogen and dissimilation of oxidized anions for energy transduction. Two copies of this repeat are found in Nitrite and Sulfite reductases and form a single structural domain. Length = 67

>gnl|CDD|225131 COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 432 NGRIAGKMKKTLREIIEKYNLN-VRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYV 490
            G ++ +  + + +I EKY    + IT  Q + +  I       +   L + GL      
Sbjct: 39  GGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIGLP-VGST 97

Query: 491 DPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGC 550
            P     +ACP    C  A+ +      ++ +R+   F +V + Y     I V+GCPN C
Sbjct: 98  GPAVRAIVACPGPRTCETALYDT----TELARRLEEEFLEVPVPYK--FKIAVSGCPNDC 151

Query: 551 ARPYMAELGLVG 562
            RP   ++G+VG
Sbjct: 152 TRPQAHDIGIVG 163

Length = 317

>gnl|CDD|225131 COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 62/286 (21%), Positives = 113/286 (39%), Gaps = 32/286 (11%)

Query: 120 ERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKT 179
           +R   +Y+  +RT  P G +S +    + D+A+++G G + +T+RQ  ++ G+  +D   
Sbjct: 24  KRRDGTYTVRVRTP-PGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADD 82

Query: 180 VMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYL-----FAQKTAENIAALLTPQSGF 234
           V+   +R +G  +G+ G   R ++A P P   +  L      A++  E    +  P   +
Sbjct: 83  VVE-ELREIGLPVGSTGPAVRAIVACPGPRTCETALYDTTELARRLEEEFLEVPVP---Y 138

Query: 235 YYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPD-SPEPIYGTQFLPRKFKV-AVTVPTD 292
            + + V G       P    +A +    G   P    E   G     +     A+T    
Sbjct: 139 KFKIAVSGCPNDCTRP----QAHDIGIVGVWKPKVDEELCRGCGKCVKVCPTGAITWDGK 194

Query: 293 NSVDILTNDIG------VVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL-GYV 345
                 +  IG          +   GE  G  + VGG  GR         R+G+ L    
Sbjct: 195 KLKIDGSKCIGCGKCIRACPKAAFRGEKVGIAILVGGKTGR------ELGRVGKPLVPVE 248

Query: 346 PKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVV 391
            +++I+  +K  +   RE     ++   R+   I   G EKF   +
Sbjct: 249 DEDEIIDIIKKTIEVWREYA---EKPGERIGDFIDRVGFEKFLEEI 291

Length = 317

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 18/114 (15%)

Query: 279 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRL 338
            P K K+AV+    N  +    D+G++         +G+NLYVGG  G         PR 
Sbjct: 656 TPHKVKMAVSGCPRNCAEAGIKDVGIIGTE------KGWNLYVGGNGG-------MKPRH 702

Query: 339 GEQLGYVPKED-ILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVV 391
            + L  V  E+ +L  + A +   RE     +R    +  L    G+E  + VV
Sbjct: 703 ADLLAKVLTEEEVLEYIDAFLQYYRETADYLERTAPWLDRL----GLEHIKEVV 752

Length = 793

>gnl|CDD|216287 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 495 ITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGL--KYNESVVIRVTGCPNGCAR 552
               +CP   LCP  + +       +   +   +    L  K+     I V+GCPN C  
Sbjct: 6   RNVTSCPGAGLCPEELIDTRPLAKALEDELEDEYGFPDLPRKFK----IAVSGCPNDCVA 61

Query: 553 PYMAELGLVG 562
            +  ++G +G
Sbjct: 62  AHANDIGFIG 71

Sulphite and nitrite reductases are vital in the biosynthetic assimilation of sulphur and nitrogen, respectfully. They are also both important for the dissimilation of oxidized anions for energy transduction. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	574
PLN00178	623	sulfite reductase	100.0
TIGR02042	577	sir ferredoxin-sulfite reductase. monomeric enzyme	100.0
KOG0560	638	consensus Sulfite reductase (ferredoxin) [Inorgani	100.0
PRK13504	569	sulfite reductase subunit beta; Provisional	100.0
TIGR02041	541	CysI sulfite reductase (NADPH) hemoprotein, beta-c	100.0
PRK09567	593	nirA ferredoxin-nitrite reductase; Reviewed	100.0
COG0155	510	CysI Sulfite reductase, beta subunit (hemoprotein)	100.0
PLN02431	587	ferredoxin--nitrite reductase	100.0
PRK09566	513	nirA ferredoxin-nitrite reductase; Reviewed	100.0
TIGR02435	390	CobG precorrin-3B synthase. An iron-sulfur protein	100.0
TIGR02066	341	dsrB sulfite reductase, dissimilatory-type beta su	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
COG2221	317	DsrA Dissimilatory sulfite reductase (desulfovirid	100.0
TIGR02912	314	sulfite_red_C sulfite reductase, subunit C. Member	100.0
TIGR02064	402	dsrA sulfite reductase, dissimilatory-type alpha s	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK09567	593	nirA ferredoxin-nitrite reductase; Reviewed	100.0
PLN02431	587	ferredoxin--nitrite reductase	100.0
PLN00178	623	sulfite reductase	100.0
TIGR02042	577	sir ferredoxin-sulfite reductase. monomeric enzyme	100.0
PRK09566	513	nirA ferredoxin-nitrite reductase; Reviewed	100.0
PRK13504	569	sulfite reductase subunit beta; Provisional	100.0
PF01077	157	NIR_SIR: Nitrite and sulphite reductase 4Fe-4S dom	99.97
TIGR02041	541	CysI sulfite reductase (NADPH) hemoprotein, beta-c	99.97
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.95
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.94
COG2221	317	DsrA Dissimilatory sulfite reductase (desulfovirid	99.94
TIGR02066	341	dsrB sulfite reductase, dissimilatory-type beta su	99.94
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.92
TIGR02435	390	CobG precorrin-3B synthase. An iron-sulfur protein	99.92
COG0155	510	CysI Sulfite reductase, beta subunit (hemoprotein)	99.9
TIGR02064	402	dsrA sulfite reductase, dissimilatory-type alpha s	99.9
TIGR02912	314	sulfite_red_C sulfite reductase, subunit C. Member	99.89
KOG0560	638	consensus Sulfite reductase (ferredoxin) [Inorgani	99.75
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.74
PF03460	69	NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin	99.67
PF01077	157	NIR_SIR: Nitrite and sulphite reductase 4Fe-4S dom	99.6
PF03460	69	NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin	99.45
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	98.94
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	98.76
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	97.32
PF04551	359	GcpE: GcpE protein; InterPro: IPR004588 This prote	96.48
PF04551	359	GcpE: GcpE protein; InterPro: IPR004588 This prote	96.44
PLN02925	733	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	96.04
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	95.99
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	95.82
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	95.44
PLN02925	733	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	94.82
PRK00694	606	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	94.76
cd01916	731	ACS_1 Acetyl-CoA synthase (ACS), also known as ace	94.13
PRK02048	611	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	93.08
PRK00694	606	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	91.9
PRK02048	611	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	89.97
PRK00941	781	acetyl-CoA decarbonylase/synthase complex subunit	87.0

>PLN00178 sulfite reductase

Probab=100.00  E-value=1.2e-128  Score=1081.40  Aligned_cols=529  Identities=81%  Similarity=1.296  Sum_probs=503.3

Q ss_pred             cCCCCCccceeecccCCCCCCcccccCCCCChhhhhhhccCCCccchHHHhhhcCCCCChhHHHHhhhceeEeeccCccc
Q 008202           42 PVPYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDER  121 (574)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~E~~K~~~~~l~~~~~~~~~~~~~~~~~~~~~~~k~~G~y~Q~~r~~r  121 (574)
                      +.+.+++.+++++|++|++++++.  .+|+||+|+||++|++|+++++++|++..++++++|.+++||||+|+|+|||.|
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~--~~k~~~~E~~K~~s~~l~~~~~~~l~~~~~~~~~~d~~~~K~~G~y~q~~r~~r  103 (623)
T PLN00178         26 PSRSRSGRLVIRAVATPVKKPTTE--PPKRSKVEIIKENSNFLRHPLNEELATEAPNINEDAVQLIKFHGSYQQDNREKR  103 (623)
T ss_pred             CccccCCCcceeeeecCCCCcccc--cCCCCHHHHHhhhcCCCcchHHHHHHhccCCCChhHHhHhheeeeeeecCcccc
Confidence            444445568889999999998764  779999999999999999999999998888999999999999999999999999


Q ss_pred             CCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcc
Q 008202          122 GAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRN  201 (574)
Q Consensus       122 ~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RN  201 (574)
                      .+++|+||+|+|+|+|+||++||++|++||++||+|+||||||||||||||.++|+++++++|.+.+++|.++|||++||
T Consensus       104 ~~~~~~fMlRvriPgG~lt~~Q~~~la~iA~~yg~g~l~lTTRq~iQlhgI~~~dl~~i~~~L~~~gl~t~~a~gD~~RN  183 (623)
T PLN00178        104 GGKAYQFMLRTKQPAGKVPNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGVLKKDLKTVMSSIIKNMGSTLGACGDVNRN  183 (623)
T ss_pred             CCcCcceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEecccceEEcCCCHHHHHHHHHHHHHcCCCcccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999955566999999999999


Q ss_pred             eecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCC
Q 008202          202 VLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPR  281 (574)
Q Consensus       202 V~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPr  281 (574)
                      ||+||+|++..++.|++++|.+|+++|.|++++|+|+|||++++...++++++.+++++.++++|.+++||+|+..+|||
T Consensus       184 V~~~p~p~~~~e~~d~~~~a~~l~~~l~p~t~~y~e~~ld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ep~yg~~~LPR  263 (623)
T PLN00178        184 VLAPAAPFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARNDNSHGTNFEDSPEPIYGTQFLPR  263 (623)
T ss_pred             eecCCCcCCchhhhhHHHHHHHHHHhhcccccchhhhhcccccccccccchhhhhhhcccccccccCCccccccccCCCC
Confidence            99999999989999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHH
Q 008202          282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQ  361 (574)
Q Consensus       282 KfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~  361 (574)
                      ||||+|+||++||+++++|||||+++.+++|+..||+|+||||+|++|++..|+|++|+.++||++||+++++++|+.+|
T Consensus       264 KFKiavsg~~~n~~~~~~nDiG~~a~~~~~g~~~Gf~v~vGGg~g~~~~~~~t~pr~a~~l~~v~~e~v~~v~~av~~~~  343 (623)
T PLN00178        264 KFKIAVTVPGDNSVDILTNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLGYVPKEDILYAVKAIVATQ  343 (623)
T ss_pred             CeEEEEecCccccccccccceEEEEEEeCCCcEeeEEEEEECccccCCCccCCCCccccccCcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999875566679999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHHHHH
Q 008202          362 RENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKK  441 (574)
Q Consensus       362 rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~  441 (574)
                      +|+|+|+||+++||||+|++||+++|+++||+|+|+++++..+.+++...+|+|||+|+||.|++++++|+|+|+++||+
T Consensus       344 rd~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~~g~~~~~~~~~~~~~~~d~~G~~~q~dG~~~v~l~vp~Grit~~~l~  423 (623)
T PLN00178        344 RDYGRRDDRKQSRMKYLVHSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSYLGWHEQGDGKLFYGVHVDNGRIKGEAKK  423 (623)
T ss_pred             HHhCcccchhhhHHHHHHHHHCHHHHHHHHHHHhcccccCCCCccccccccceeEEEccCCcEEEEEecCCeecCHHHHH
Confidence            99999999999999999999999999999999999999888888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHH
Q 008202          442 TLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDIL  521 (574)
Q Consensus       442 ~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~  521 (574)
                      .|++||++||.+||||+||||+|++|+++++++|.+.|+++|+......++++++++||+|+++|++|++||+++++.|+
T Consensus       424 ~La~iAe~yg~~iRlT~~Qnlil~~I~~~~~~~i~~~L~~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~  503 (623)
T PLN00178        424 ALREVIEKYNLPVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDIL  503 (623)
T ss_pred             HHHHHHHHhCCcEEEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHH
Confidence            99999999998999999999999999999999999999999998755568899999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202          522 KRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       522 ~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      +++++.+.+.+++.+.+++||||||||+|++|+++||||+|++++.|+||+
T Consensus       504 ~~l~~~~~~~~l~~~~~i~I~vSGCpNgCarp~iaDIGlvG~~~~~Y~I~l  554 (623)
T PLN00178        504 KRVRAMFNKVGLKYDESVVVRMTGCPNGCARPYMAELGFVGDGPNSYQIWL  554 (623)
T ss_pred             HHHHHHHhhcCCCCCCceEEEEeCCCccccccccCcEEEEcCCCCeEEEEE
Confidence            999998888888766899999999999999999999999999888999997

>TIGR02042 sir ferredoxin-sulfite reductase

Probab=100.00  E-value=9.7e-120  Score=1005.03  Aligned_cols=504  Identities=71%  Similarity=1.181  Sum_probs=471.7

Q ss_pred             CCCCChhhhhhhccCCCccchHHHhhhcCCCCChhHHHHhhhceeEeeccCcccC---CccceEEEEEEcCCccccHHHH
Q 008202           68 ETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERG---AKSYSFMLRTKNPCGKVSNQLY  144 (574)
Q Consensus        68 ~~k~~~~E~~K~~~~~l~~~~~~~~~~~~~~~~~~~~~~~k~~G~y~Q~~r~~r~---~~~~~fmvRiripgG~lt~~ql  144 (574)
                      .+|+||+|+||.+|++||++|.++|.+..++++++|.+++||||+|+|+|||.|.   +++|+||+|+|+|+|+||++||
T Consensus         3 ~~~~~~~e~~k~~s~~l~~~~~~~l~~~~~~~~~~d~~~lK~~G~y~q~~r~~r~~~~~~~~~fM~RiriPgG~lt~~q~   82 (577)
T TIGR02042         3 PQKRSKVEILKERSNFLREPLNEQLLEEATHFNEDAVQILKFHGSYQQDNRDNRGKGQEKDYQFMLRTKNPGGYVPPQLY   82 (577)
T ss_pred             CCCCChHHHHhhhcccccCcHHHHhhccccCCChhHHHHHhheeeeeecCccccccccCccceEEEEEecCCcccCHHHH
Confidence            3479999999999999999999999988889999999999999999999998774   6788999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCch-hhhhHHHHHHH
Q 008202          145 LTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRK-DYLFAQKTAEN  223 (574)
Q Consensus       145 ~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~-~~~d~~~la~~  223 (574)
                      +.|++||++||+|++|||||||||||||+++++++++++|.+.+++|.++|||++||||+||+++|.. ++.++.+++++
T Consensus        83 ~~ia~ia~~yg~g~~~iTtRq~iql~gi~~~~~~~~~~~l~~~~l~t~~a~gd~~RNV~~~P~~~~~~~~~~~~~~~a~~  162 (577)
T TIGR02042        83 LTLDDLADEYGNGTLRATTRQTFQLHGILKKNLKTVISTIVKNLGSTLGACGDLNRNVMAPPAPFRKRPEYEFAREYADN  162 (577)
T ss_pred             HHHHHHHHHhCCCcEEEEcccceEeCCCCHHHHHHHHHHHHHhCCCceeccCCCCCCeecCCCccccchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999996666689999999999999999998876 89999999999


Q ss_pred             HHHHhCCCcccccceeccccccccCC-ChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCE
Q 008202          224 IAALLTPQSGFYYDMWVDGEQIMTAE-PPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDI  302 (574)
Q Consensus       224 l~~~l~p~~~ay~e~wld~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DI  302 (574)
                      |+++|.|+|+||+|+|||++++++.+ .+.+...++++.+|+.+..++||+|+..+|||||||+||||++||+++++|||
T Consensus       163 i~~~~~p~t~a~~e~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPRKFKi~vsg~~~~~~~~~~nDl  242 (577)
T TIGR02042       163 IADLLTPQSGAYYELWLDGEKVMSAEPDPEVVAARNDNSHGTNFADSPEPLYGTQYLPRKFKIAVTVPGDNSIDLFTQDI  242 (577)
T ss_pred             HHHhhcccccchhheecccccccccccchhhhhhhhcccccccccCCccccccccCCCCCceEEEEcCCCCcccceecce
Confidence            99999999999999999999998764 35566777777777767667899998889999999999999999999999999


Q ss_pred             EEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHh
Q 008202          303 GVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSW  382 (574)
Q Consensus       303 G~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~  382 (574)
                      ||+++.+++|+..||+|+||||+|++|+++.|+|++|+.++||++||+++++++|+.+|+|||+|+||+++||||+|++|
T Consensus       243 gf~a~~~~~g~~~Gf~v~vGGglg~~~~~~~t~p~~a~~l~~v~~e~v~~~~~av~~~~rd~G~R~nR~~aRlk~li~~~  322 (577)
T TIGR02042       243 GLVVVSNERGELEGFNIYVGGGMGRTHNKEETFARLADPLGYVPKEDIYYAVKAIVATQRDYGDRDDRRHARMKYLISDW  322 (577)
T ss_pred             EEEEEEeCCCcEeeEEEEEecccCCCCCCccccchhccccCcCCHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHH
Confidence            99999875566679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHH----HHHHHHHHHHHhCCeEEEcc
Q 008202          383 GIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITP  458 (574)
Q Consensus       383 G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~----~l~~La~la~~yg~~irlT~  458 (574)
                      |+|+|+++|++++++.+++..+.+.+...+|+||++|++|.|++++++|+|+|+++    +++.|++||++|+.++|||+
T Consensus       323 G~e~f~~~ve~~~~~~~~~~~~~~~~~~~d~~G~~~q~dG~~~v~l~vp~Grl~~~~~~~l~~~LaeIA~~yg~~irlT~  402 (577)
T TIGR02042       323 GIEKFREVVEQYFGKKIAPVRELPEFEYKDYLGWHEQGDGKWFLGLHIDSGRVKDDGNWQLKKALREIVEKYNLPVRLTP  402 (577)
T ss_pred             CHHHHHHHHHHHhccccCCcccCCcccccccceEEECCCceEEEEEEecCceecCCchHHHHHHHHHHHHHhCCCEEEcC
Confidence            99999999999999998887777777888999999999999999999999999995    45899999999998999999


Q ss_pred             CCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCc
Q 008202          459 NQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNES  538 (574)
Q Consensus       459 ~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~  538 (574)
                      +|||+|++|+++++++|.+.|++.||......++.+++++||+|+++|+++++||++.++.++++++++++..+++ +.+
T Consensus       403 ~Qnl~l~~V~~~~~~~i~~~L~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~l~~l~~~~~l~-~~~  481 (577)
T TIGR02042       403 NQNIILYDIQPEWKRAITTVLAQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRALLEKVGLP-DEH  481 (577)
T ss_pred             CCCeEECCCCHHHHHHHHHHHHhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHHHHHHHHhcCCC-CCC
Confidence            9999999999999999999999999987655788999999999999999999999999999999999988888875 478


Q ss_pred             eEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202          539 VVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       539 ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      ++||||||||+|++|+++||||+|++.++|+||+
T Consensus       482 i~I~vSGCpn~Ca~p~iaDIG~vG~~~~~y~l~l  515 (577)
T TIGR02042       482 FVVRMTGCPNGCARPYMAELGFVGSAPNSYQVWL  515 (577)
T ss_pred             cEEEEECCCccccCCCcCcEEEECCCCCcEEEEE
Confidence            9999999999999999999999999888899997

monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.

>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.2e-121  Score=942.99  Aligned_cols=537  Identities=48%  Similarity=0.793  Sum_probs=490.7

Q ss_pred             cccccccccccccccc--cc-cccccCCCCCccce--eecccCCCCCCcccccCCCCChhhhhhhccCCCccchHHHhhh
Q 008202           20 IRSFNGLKPSHSLSIR--TN-LRAFPVPYASRSSV--VRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLT   94 (574)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~E~~K~~~~~l~~~~~~~~~~   94 (574)
                      +..+.-++..+.+.+|  +. .+..|..+.+..++  .+|+.++..|.+..  ++|+.++|.||++|+++|+++.+++.+
T Consensus        26 l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~~p~d~d--~~kr~~~e~ike~snflr~~iseelld  103 (638)
T KOG0560|consen   26 LVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGINPQDKD--EPKRETNEDIKENSNFLRGTISEELLD  103 (638)
T ss_pred             HHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCCCccccc--cCCcccHHHHHhhcchhhcccchhhhh
Confidence            4556667776666666  22 22223322223344  78999998887754  789999999999999999999999987


Q ss_pred             cC-CCCChhHHHHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCC
Q 008202           95 DA-PNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVL  173 (574)
Q Consensus        95 ~~-~~~~~~~~~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~  173 (574)
                      +. .++++.|.|++||||+|+|+|||.|.++.|+||+|.|+|+|+.|++||++|++|+++||+|+++|||||++|+|||.
T Consensus       104 es~~~v~esdvqL~KfhGiy~qddRd~r~gr~y~FM~R~klP~Gvtt~qq~l~lddls~k~G~gtlklTTRqtfQihGVl  183 (638)
T KOG0560|consen  104 ESKGSVDESDVQLIKFHGIYHQDDRDIRYGRSYSFMMRAKLPNGVTTPQQWLALDDLSDKYGNGTLKLTTRQTFQIHGVL  183 (638)
T ss_pred             cCcCCcchhHHHHHHHhhhhhhcchhhhcchhhhhhheecCCCCCCCHHHHHHHHHHHHhhCCceeeeeeeceeeeeeee
Confidence            75 46999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhh
Q 008202          174 KKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEV  253 (574)
Q Consensus       174 ~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~  253 (574)
                      +.||+++++.|++.+++|+++|||++|||+++.+|.....+.+..+.++.|+++|.|+|++|||+|++++++        
T Consensus       184 kknlk~~lrgi~kv~ltTL~a~gD~~RNv~~sa~P~~~kd~~qi~dt~k~is~~llP~T~~y~e~w~e~~q~--------  255 (638)
T KOG0560|consen  184 KKNLKETLRGIAKVGLTTLGACGDVNRNVVGSANPINGKDHEQIVDTAKNISALLLPYTNLYHEFWTEGPQV--------  255 (638)
T ss_pred             hhhhHHHHHHHHHHHhhhhhhhccccccccccCCCccccCHHHHHHHHHHHhhhhCCccchHHHHhhcCcHH--------
Confidence            999999999997777799999999999999998888888889999999999999999999999999998664        


Q ss_pred             hhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccc
Q 008202          254 VKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET  333 (574)
Q Consensus       254 ~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~  333 (574)
                      +.+|+  .+|+++-++ |||||.++||||||++|+++|+|.+++++||||++++.+. +.+.||||+||||||++|++++
T Consensus       256 ve~rk--v~Gn~~~d~-epiygptyLPRKfkv~Vavp~dn~vd~~tnDva~v~i~en-d~~~GfNv~VGGgmgtthr~ek  331 (638)
T KOG0560|consen  256 VEARK--VHGNADVDN-EPIYGPTYLPRKFKVCVAVPPDNDVDVLTNDVALVAINEN-DGVFGFNVLVGGGMGTTHRNEK  331 (638)
T ss_pred             hhhhc--cCCCccccc-ccccCcccCccceeEEEecCCCccccccccceeEEEEecc-CCceeeEEEeccccCCcccchh
Confidence            34454  678888766 9999999999999999999999999999999999999954 6678999999999999999999


Q ss_pred             cccccccccCCCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCCCCCC--CCCccccc
Q 008202          334 TFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFR--QLPEWEFK  411 (574)
Q Consensus       334 t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~~~--~~~~~~~~  411 (574)
                      |+||+|..+|||+.|+++++++||+.+|||+|+|+||+++||||+|+.||++.||++||+|+|++|+|.+  +.+.|++.
T Consensus       332 t~prla~~~gyVptddIl~~vkaIli~qRd~G~R~nRk~aRmkylid~lGVe~Fr~~VEe~~g~KfE~~r~~~~~~we~~  411 (638)
T KOG0560|consen  332 TYPRLAELDGYVPTDDILPLVKAILIVQRDHGDRGNRKHARMKYLIDELGVEGFRTKVEEYMGKKFEPGRSEPNKQWERR  411 (638)
T ss_pred             hcccccccccccchhhhHHHhhhheeeehhccCccchhhhhhhhhHHhhhhHHHHHHHHHHhcccCCcCcCCcchhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988  77889999


Q ss_pred             ccCCeeeecCCcEEEEEEeCCCCcCHHHHHH-HHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCC
Q 008202          412 SHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYV  490 (574)
Q Consensus       412 ~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~-La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~  490 (574)
                      ||+|||+|++|.|+++++|++||+.+.+++. |+++++.+..++|||++|||+|+||.+++.+.|.+.|+..++.... .
T Consensus       412 dyfGwh~q~~gl~f~glhVe~GRve~l~~ktglRev~e~~~~e~rlT~nQniii~nv~te~~~~i~~~la~~~l~npe-f  490 (638)
T KOG0560|consen  412 DYFGWHKQEEGLSFVGLHVENGRVEALDMKTGLREVAEYGSGELRLTVNQNIIIPNVETEKTEAILQELALYKLDNPE-F  490 (638)
T ss_pred             cccccccCCCCceEEEEEccccccccchhhhHHHHHHHhhcceeeecccccEEecccchhhhHHHHHHHHHhccCCcc-h
Confidence            9999999999999999999999999988887 6666666556899999999999999999999999999999998865 4


Q ss_pred             CCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEE
Q 008202          491 DPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQV  570 (574)
Q Consensus       491 ~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l  570 (574)
                      +.++.+++||+|+|+|++|++||++.+|+|.+++++.|+.+|++.| +|.+|||||||+|+||++|||||+|++|+.|++
T Consensus       491 s~L~~ss~AC~g~p~CglAi~Eser~lpkii~~ve~~~e~vgl~~d-sIvmr~TGCPNgCsrp~vaeig~vGkapnty~~  569 (638)
T KOG0560|consen  491 SGLRLSSVACVGLPTCGLAIAESERRLPKIITEVERMFEEVGLPRD-SIVMRMTGCPNGCSRPWVAEIGLVGKAPNTYNL  569 (638)
T ss_pred             hhhhhhhhcccCCCcchhHHHHHhhchhHHHHHHHHHHHHhCCCCC-ceEEEeccCCCCCCcchhhheeecccCCcceee
Confidence            6688999999999999999999999999999999999999999976 699999999999999999999999999999999


Q ss_pred             EE
Q 008202          571 FQ  572 (574)
Q Consensus       571 ~l  572 (574)
                      ++
T Consensus       570 ~l  571 (638)
T KOG0560|consen  570 ML  571 (638)
T ss_pred             ec
Confidence            86

>PRK13504 sulfite reductase subunit beta; Provisional

Probab=100.00  E-value=1.9e-110  Score=933.65  Aligned_cols=485  Identities=47%  Similarity=0.781  Sum_probs=446.7

Q ss_pred             CCCCChhhhhhhccCCCccchHHHhhhc-CCCCChhHHHHhhhceeEeeccCcccC-------CccceEEEEEEcCCccc
Q 008202           68 ETKRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERG-------AKSYSFMLRTKNPCGKV  139 (574)
Q Consensus        68 ~~k~~~~E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~k~~G~y~Q~~r~~r~-------~~~~~fmvRiripgG~l  139 (574)
                      .+|+||+|+||.+|++|++++.++|++. .+++++++++++||||+|+|+|||.|.       +++|.||+|||+|+|+|
T Consensus         8 ~~~~~~~E~~K~~~~~l~~~i~~~~~~~~~~~~~~~~~~~lk~~G~y~q~~r~~r~~~~~~~~~~~~~fm~RvriP~G~l   87 (569)
T PRK13504          8 EGKLSDVERIKLESNYLRGTIAEELNDGLTGGFSEDDFQLLKFHGSYQQDDRDIRAERAEQKLEPAYQFMLRCRLPGGVI   87 (569)
T ss_pred             CCCCChHHHhhccCcCccchHHHHHHhhccCCCCHHHHHHHhheeeeEecchhhhhhhcccccCcCcceEEEEecCCCcc
Confidence            5689999999999999998898988764 578999999999999999999988763       34578999999999999


Q ss_pred             cHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCCCCchhhhhHH
Q 008202          140 SNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQ  218 (574)
Q Consensus       140 t~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~~~~~~~~d~~  218 (574)
                      |++||++|++||++||+|++|||||||||||||+++++++++++| .+.| ++.++|||++|||++||+++|..++.|++
T Consensus        88 t~~Ql~~la~la~~yg~G~i~lTtRQniQL~gI~~~~l~~i~~~L-~~~gl~t~~a~gd~~RNV~~~p~~~~~~~~~d~~  166 (569)
T PRK13504         88 TPQQWLALDKLADEYGNGTLRLTTRQTFQFHGILKKNLKPVIQTI-NSVLLDTLAACGDVNRNVMCTPNPYESRLHAEAY  166 (569)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEecccceeecCCchHhHHHHHHHH-HHcCCCcccccCCCCCceecCCCcccccchHHHH
Confidence            999999999999999999999999999999999999999999999 6666 77899999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccc
Q 008202          219 KTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDIL  298 (574)
Q Consensus       219 ~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~  298 (574)
                      +++.+|.++|.|++.+|+|+|+++++......                 ...+|+|+..+|||||||+||||+++|++++
T Consensus       167 ~la~~l~~~l~~~~~~y~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~LPrKfKiavsgc~~~c~~~~  229 (569)
T PRK13504        167 EWAKKISDHLLPRTRAYAEIWLDGEKVATFSG-----------------TEEEPIYGKTYLPRKFKIAVAVPPDNDVDVY  229 (569)
T ss_pred             HHHHHHHHHhccccchhHHhhhcCcccccccc-----------------cccCcccccCCCCCceEEEEEcCCccccCce
Confidence            99999999999999999999998765432100                 0125678878999999999999999999999


Q ss_pred             cCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Q 008202          299 TNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYL  378 (574)
Q Consensus       299 ~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~l  378 (574)
                      +|||||+++.++ |++.||+|||||++|++|++..++|++|+.+++|++|++++++++|+++|+++|+|.+|+++||+|+
T Consensus       230 ~~DiG~~~~~~~-g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~G~r~~r~~aRlk~l  308 (569)
T PRK13504        230 ANDLGFVAIAEN-GKLVGFNVLVGGGMGMTHGDKETYPRLADELGYVPPEDVLDVAEAVVTTQRDYGNRTDRKNARLKYT  308 (569)
T ss_pred             ecceEEEEEecC-CcEEEEEEEEEccccCCCCCCCCCCccccccCccCHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHH
Confidence            999999999764 6567999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHH----HHHHHHHHHHHhCCeE
Q 008202          379 ISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNV  454 (574)
Q Consensus       379 i~r~G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~----~l~~La~la~~yg~~i  454 (574)
                      |++||+++|++++++++++++++..+.+.+...+|+||++|++|+|+|++++|+|+|+++    +++.|+++|++|+.+|
T Consensus       309 v~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~G~~~v~v~vp~Grl~~~~~~~~l~~La~iA~~yg~~i  388 (569)
T PRK13504        309 LERVGLDWFKAEVERRAGKKLEPARPYEFTGRGDRLGWVEGIDGKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHKGDF  388 (569)
T ss_pred             HHHHhHHHHHHHHHHHhcCccCCCCCCCccCccceeEEEecCCCcEEEEEEecCEEecCCCcHHHHHHHHHHHHHhCCEE
Confidence            999999999999999999988876665556677899999999999999999999999999    9999999999999889


Q ss_pred             EEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCC
Q 008202          455 RITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLK  534 (574)
Q Consensus       455 rlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~  534 (574)
                      |||++|||+|++|+++++++|.+.|+++|+......++++++++||+|+++|++|++||+++++.|+++|++.+...+++
T Consensus       389 rlT~~Qnl~l~~i~~~~~~~l~~~L~~~gl~~~~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~~~~~~l~  468 (569)
T PRK13504        389 RLTANQNLIIANVPPSDKAKIEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLS  468 (569)
T ss_pred             EEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999987655588889999999999999999999999999999999988777662


Q ss_pred             CCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202          535 YNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       535 ~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                       +.+++||||||||+|++|+++||||+|+..+.|+||+
T Consensus       469 -~~~i~I~vSGCpn~Ca~~~iaDIG~vG~~~~~y~i~l  505 (569)
T PRK13504        469 -DEHIVIRMTGCPNGCARPYLAEIGLVGKAPGRYNLYL  505 (569)
T ss_pred             -CCceEEEEeCCcccccccccCcEEEEecCCCeEEEEE
Confidence             3689999999999999999999999999888899997

>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component

Probab=100.00  E-value=1e-102  Score=866.23  Aligned_cols=475  Identities=42%  Similarity=0.754  Sum_probs=431.1

Q ss_pred             hhhhhccCCCccchHHHhhhc-CCCCChhHHHHhhhceeEeeccCcccC-------CccceEEEEEEcCCccccHHHHHH
Q 008202           75 EIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERG-------AKSYSFMLRTKNPCGKVSNQLYLT  146 (574)
Q Consensus        75 E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~k~~G~y~Q~~r~~r~-------~~~~~fmvRiripgG~lt~~ql~~  146 (574)
                      |+||.+|+||++++.++|.+. ...+++++++++||||+|+|+|||.|.       ++.|.||||+|+|+|+||++|+++
T Consensus         1 e~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lk~~G~y~q~~~~~~~~~~~~~~~~~~~fmvRvripgG~lt~~Ql~~   80 (541)
T TIGR02041         1 ERIKEESNYLRGTLLESLADPLTGGFSGDDFQLIKFHGMYQQDDRDLRAERAEQKLEPAYQFMLRCRLPGGVITPKQWLA   80 (541)
T ss_pred             CcchhccccchhHHHHHHhhhhhcCCCHHHHHHHHHheeeeeccccchhhhcccccCCcceeEEEEecCCcEECHHHHHH
Confidence            899999999999999989765 458999999999999999999998664       355789999999999999999999


Q ss_pred             HHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHH
Q 008202          147 MDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIA  225 (574)
Q Consensus       147 la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~  225 (574)
                      |++||++||+|+++||||||||||||+.+++++++++| .++| ++.++|||++|||+|+|.|+|..+..|++++|.+|+
T Consensus        81 la~ia~~yg~g~i~lTtRQniQl~gI~~~~l~~v~~~L-~~~GL~t~~a~gd~~RnV~c~~~p~~~~~~~e~~~~a~~l~  159 (541)
T TIGR02041        81 IDKFAREYGNGSIRLTTRQTFQFHGILKRNLKAVHQAI-HSAGLDSIATCGDVNRNVLCTSNPYESELHQEAYEWAKKIS  159 (541)
T ss_pred             HHHHHHHhCCCeEEEecccceEEcCCChhHHHHHHHHH-HHcCCCccccCCCCCCceeCCCCcccCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999 7777 779999999999997677899999999999999999


Q ss_pred             HHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEE
Q 008202          226 ALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVV  305 (574)
Q Consensus       226 ~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~v  305 (574)
                      ++|.+++.+|+++|+++..+...                   ...+|+|+..+|||||||+||||+++|+++++|||||+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~LPrKfKi~isg~~~~~~~~~~~DiG~~  220 (541)
T TIGR02041       160 EHLLPRTRAYHEIWLDEKKVAGT-------------------EEVEPIYGPTYLPRKFKTGVVIPPINDVDVYANDLGFV  220 (541)
T ss_pred             HHhccCchhHHHHhhhcccccCC-------------------cccCccccccCCCCCcEEEEECCCCccccccccceEEE
Confidence            99999999999999876443210                   01246787778999999999999999999999999999


Q ss_pred             EEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhh
Q 008202          306 VVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE  385 (574)
Q Consensus       306 a~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e  385 (574)
                      ++.++ |+..||+|+|||++|+++++..|+|++|..++||++|++++++++|+++|+++|+|.+|+++||+|+|++||++
T Consensus       221 a~~~~-g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~g~r~~r~~aRlk~li~~~G~e  299 (541)
T TIGR02041       221 AIADN-GKLIGFNVLIGGGLGMTHGNKATYPRLANEIGFIPPEHTLAVAEAIVTTQRDFGNRTDRKNARTKYTIDRMGLD  299 (541)
T ss_pred             EEEeC-CcEEEEEEEEeccccCCCCCcCCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHhCHH
Confidence            98874 55679999999999998888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCH----HHHHHHHHHHHHhCCeEEEccCCc
Q 008202          386 KFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQN  461 (574)
Q Consensus       386 ~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~----~~l~~La~la~~yg~~irlT~~Qn  461 (574)
                      +|+++|++++++++.+..+.......+|+||++|++|+|++++++|+|+|++    .+++.|+++|+.|+.+||+|+|||
T Consensus       300 ~f~~~v~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~G~~~v~v~~p~G~l~~~~~~~~l~~la~iA~~~~~~irlT~~Qn  379 (541)
T TIGR02041       300 TFKAEVERRAGITLEPARPYVFTHRGDRYGWVKGIDGNWHLTLFIESGRIADYPDKPLMTGLREIAKIHKGDFRITPNQN  379 (541)
T ss_pred             HHHHHHHHHhCCCCCCCCCccccccccccCeecCCCCcEEEEEEecCceeecCccHHHHHHHHHHHHhcCCeEEEeCCCC
Confidence            9999999999988776555444456789999999999999999999999995    499999999987766899999999


Q ss_pred             EEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEE
Q 008202          462 IILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVI  541 (574)
Q Consensus       462 lil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI  541 (574)
                      |+|+||++++++++.+.|+++|+.+.. .++.+++++||+|+++|++|++||+.+++.|+++|++.+.+.+.. +.+++|
T Consensus       380 l~l~~v~~~~~~~l~~~l~~~gl~~~~-~~~~~~~vvAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~~~~~~-~~~~~I  457 (541)
T TIGR02041       380 LIIANVPEGGKAKIEALARQYGLIDGK-VTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKHGLA-DEEIVL  457 (541)
T ss_pred             EEEcCCCHHHHHHHHHHHHHcCCCCCC-CCceeeccEECCCccchhhhHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEE
Confidence            999999999999999999999997643 567778999999999999999999999999999999888766643 468999


Q ss_pred             EEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202          542 RVTGCPNGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       542 ~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      |||||||+|++|+++||||+|+..+.|+||+
T Consensus       458 ~iSGCpn~Ca~~~~adIG~~G~~~~~y~l~l  488 (541)
T TIGR02041       458 RMTGCPNGCGRPYLAEIGLVGKAPGRYNLML  488 (541)
T ss_pred             EEecCCccccccccCcEEEEEeccceEEEEE
Confidence            9999999999999999999999888899997

In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.

>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed

Probab=100.00  E-value=2.1e-98  Score=837.94  Aligned_cols=441  Identities=25%  Similarity=0.387  Sum_probs=388.1

Q ss_pred             cCCCCChhhhhhhccCCCcc-chHHHhhhcCCCCC-hhHHHHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHH
Q 008202           67 TETKRSKVEIIKEQSNFIRY-PLNEELLTDAPNVN-ESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLY  144 (574)
Q Consensus        67 ~~~k~~~~E~~K~~~~~l~~-~~~~~~~~~~~~~~-~~~~~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql  144 (574)
                      +.+|+||+|+||++|++|+. +.+.+++... .++ +++.++|||||+|+|...      .+.||+|||+|+|+||++||
T Consensus        61 ~~~kl~~~E~~K~~~~~l~~~~~l~~~~~~~-~~~~~~~~~~~k~~G~y~~~~~------~~~fM~RvripgG~lt~~Q~  133 (593)
T PRK09567         61 AGKKLCDQEKWKREENPFDAWDRLKAQAAAG-AFPKPADNFRWKYHGLFYVAPA------QDSYMCRLRIPNGILTHWQF  133 (593)
T ss_pred             ccCCCCHHHHHhhcCCcchhhhHHHHHHhcC-CCCChhhhhhhccceEEEEccc------CCeEEEEEEeCCeecCHHHH
Confidence            45789999999999999983 2233333332 454 777889999999998643      36899999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCchhhhhHHHHHH
Q 008202          145 LTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAE  222 (574)
Q Consensus       145 ~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~~~~~d~~~la~  222 (574)
                      ++|++||++||+|++|||||||||||||+++|+++++++| .++| ++.++|||++||||+||++ .|+.++.|+++++.
T Consensus       134 ~~la~ia~~yg~g~~~lTTRq~iQlhgI~~~d~~~i~~~l-~~~GL~t~~a~gD~~RNV~~~P~ag~~~~e~~D~~~~a~  212 (593)
T PRK09567        134 AGLADLADRHGGGYSHVTTRANLQLREIPPEHAVPVLEGL-VDLGLTARGSGADNIRNVTGSPTAGIDPQELLDTRPYAR  212 (593)
T ss_pred             HHHHHHHHHHCCCeEEEeccccEEeccCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCcCCCCCCCCChhhccchHHHHH
Confidence            9999999999999999999999999999999999999999 7777 7889999999999999985 89999999999999


Q ss_pred             HHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCE
Q 008202          223 NIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDI  302 (574)
Q Consensus       223 ~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DI  302 (574)
                      ++.++|..                                      + +++|   +|||||||+||||+++|..+.+|||
T Consensus       213 ~l~~~~~~--------------------------------------~-~~~~---~LPrKfkiaisg~~~~~~~~~~nDi  250 (593)
T PRK09567        213 EWHHHILN--------------------------------------D-RSLY---GLPRKFNVAFDGGGRIATLEDTNDI  250 (593)
T ss_pred             HHHHHHhC--------------------------------------C-chhc---CCCCCeEEEEECCCcccccccccce
Confidence            99887641                                      1 2344   4999999999999999999999999


Q ss_pred             EEEEEecCCCcc----eeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 008202          303 GVVVVSDENGEP----QGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKY  377 (574)
Q Consensus       303 G~va~~~~~g~~----~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~  377 (574)
                      ||+++.+++|..    .||+|++||++|..        .++..++ +|++|++++++++|+++|+|+|+|+||+++||||
T Consensus       251 gf~a~~~~~g~~~~~g~gf~v~vGG~~g~~--------~~a~~~~~~v~~e~v~~~~~Ai~~~f~d~G~R~~R~~aRlk~  322 (593)
T PRK09567        251 GFQAVRVLEGAGVAPGVYFRLVLGGITGHK--------DFARDTGVLLRPEEATAVADAIVRVFIENGDRTNRKKARLKY  322 (593)
T ss_pred             eeEEEEecCCccccccceEEEEEecccCCC--------cchhhhhccCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHH
Confidence            999987644431    47999999999852        4677888 6999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHhCCCCCCC-----CCCCcccccccCCeeeec-CCcEEEEEEeCCCCcCHHHHHHHHHHHHHhC
Q 008202          378 LISSWGIEKFRSVVEQYYGKKFEPF-----RQLPEWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYN  451 (574)
Q Consensus       378 li~r~G~e~fr~~ve~~~g~~~~~~-----~~~~~~~~~~~~G~~~q~-dG~~~v~v~vp~Grl~~~~l~~La~la~~yg  451 (574)
                      +|++||+|+|++++++++++++++.     .+.+.+...+|+|||+|+ +|.|+|++++|+|+|+++||+.|+++|++||
T Consensus       323 li~~~G~e~f~~~ve~~~~~~l~~~~~~~~~~~~~~~~~~~~Gv~~Qkq~G~~~v~v~vp~Grlt~~ql~~LA~iA~~yg  402 (593)
T PRK09567        323 VLDAWGFDKFLEAVEEKLGRPLTRVPAEAVAPRPAADRFAHVGVHPQKQPGLNWIGVVLPVGRLTTDQMRGLAKIAARYG  402 (593)
T ss_pred             HHHHHCHHHHHHHHHHHhcccccccchhhcCCCcchhccccceeeccCCCCceEEEEECCCCccCHHHHHHHHHHHHHhC
Confidence            9999999999999999999887532     233345667899999999 5999999999999999999999999999998


Q ss_pred             C-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHh
Q 008202          452 L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEK  530 (574)
Q Consensus       452 ~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~  530 (574)
                      . +||||+||||+|++|+++++++|.+.|.+.||...  .++.+++++||+|+++|++|++||+++++.|+++|++.+  
T Consensus       403 ~g~irlT~~Qni~l~~V~~~~~~~l~~~L~~~Gl~~~--~~~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~--  478 (593)
T PRK09567        403 DGEIRLTVWQNLLISGVPDADVAAVEAAIEALGLTTE--ASSIRAGLVACTGNAGCKFAAADTKGHALAIADYCEPRV--  478 (593)
T ss_pred             CCEEEEeCCCCeEEcCCCHHHHHHHHHHHHHcCCCCC--CcceeeccEecCCCCCCCccHhhHHHHHHHHHHHHHHhc--
Confidence            6 79999999999999999999999999999999874  355666799999999999999999999999999887654  


Q ss_pred             cCCCCCCceEEEEecCCCcCCCCCcccEEEEeec--------CCceEEEE
Q 008202          531 VGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--------PNSYQVFQ  572 (574)
Q Consensus       531 ~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~--------~g~Y~l~l  572 (574)
                       ++  +.+++||||||||+|++|+++||||+|..        .++|+||+
T Consensus       479 -~l--~~~ikI~vSGCpn~Ca~~~iaDIGfvG~~~~~~~g~~~~gy~v~l  525 (593)
T PRK09567        479 -AL--DQPVNIHLTGCHHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIVV  525 (593)
T ss_pred             -CC--CCCcEEEEECCCccccccccCCEEEEeeEeccCCCCccceEEEEE
Confidence             44  46899999999999999999999999963        25799997

>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.8e-96  Score=795.84  Aligned_cols=439  Identities=40%  Similarity=0.689  Sum_probs=396.6

Q ss_pred             CCChhhhhhhccCCCccchHHHhhhc-CCCCChhHHHH-hhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHH
Q 008202           70 KRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQL-IKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTM  147 (574)
Q Consensus        70 k~~~~E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~-~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~l  147 (574)
                      +.+ +|++|+++++++.++.+.+.+. ...+++++++. +||||+|+|       +++|.||+|+|+|+|.||++||++|
T Consensus         6 ~~~-~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y~q-------~~~~~~MlRvriPgG~ls~~q~r~l   77 (510)
T COG0155           6 PLD-NERLKAESNFLRGTIEDQLSDRLSGGLCEDDFRPLLKFDGLYLQ-------EPDHAFMLRVRIPGGILSPKQLRAL   77 (510)
T ss_pred             CcC-HHHHhhhhhhhHHHHHHHhhhccccCCCHHHHHHHHhhcceeec-------ccccceeEEEecCCCccCHHHHHHH
Confidence            344 9999999999998887777653 46899999997 999999999       2458999999999999999999999


Q ss_pred             HHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHH
Q 008202          148 DDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIA  225 (574)
Q Consensus       148 a~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~  225 (574)
                      ++||++||+|+++||||||||||||.++|++++++.| .++| .++++|||++|||+++|. .....++.|.++      
T Consensus        78 ~~iA~~yg~g~~~iTtRQniQ~hgI~~~d~~~i~~~l-~~vgl~ti~~~gd~~Rnv~~~P~ag~~~~ei~D~r~------  150 (510)
T COG0155          78 ADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAEL-ASVGLHTIATAGDVARNVTGDPLAGLDADEIADPRP------  150 (510)
T ss_pred             HHHHHHhCCCeEEEeecccceecccccccHHHHHHHH-HHcCCcchhhccccccceecCcccccchhhcccchh------
Confidence            9999999999999999999999999999999999999 6666 999999999999999874 355555555553      


Q ss_pred             HHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEE
Q 008202          226 ALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVV  305 (574)
Q Consensus       226 ~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~v  305 (574)
                            ..+|.++|+++++                              +..+|||||||+|+||++||+++++|||||+
T Consensus       151 ------~~~~~~~~l~~~~------------------------------~~~~LPRKFkiav~g~~~~~v~~~~~Di~~~  194 (510)
T COG0155         151 ------LAEILRIWLDGEK------------------------------GFAYLPRKFKIAVDGGPDNDVDVLINDIGFV  194 (510)
T ss_pred             ------HHHHHHHHhcCcc------------------------------chhcCCcceEEEEecCcccchhhhccceeEE
Confidence                  3446688887532                              1368999999999999999999999999999


Q ss_pred             EEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhh
Q 008202          306 VVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGI  384 (574)
Q Consensus       306 a~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~  384 (574)
                      ++.+. +++.||+|+||||+|++|      |.++..+. +|+++++++++++|+.+|+++|+|.||+++|+||+|++||+
T Consensus       195 a~~~~-~~~~Gf~v~VGGglg~~~------~~~~~~~~~~v~~~~~~~~~~aiv~~~~d~G~R~nr~~aR~k~lv~~~G~  267 (510)
T COG0155         195 AIKEN-DGLLGFNVLVGGGLGRTH------PKTAPRLAEFVPPEDVLEVVEAIVRVYRDYGRRANRKKARLKYLVEALGV  267 (510)
T ss_pred             Eeccc-CCccceEEEEccccccCC------cchhhHHhhccCHHHHHHHHHHHHHHHHhcchhhhhhhhhHHHHHHHhCh
Confidence            99974 455799999999999986      34444444 67889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEE
Q 008202          385 EKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNII  463 (574)
Q Consensus       385 e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnli  463 (574)
                      |+|+++||+++|++|.|.++...+...+|+||++|+||.|++++.+++||+++..+..|++.+++++. +||+|+||||+
T Consensus       268 E~f~~~ve~~~g~~~~~~~~~~~~~~~d~~Gw~~~~~g~~~~g~~v~~Grl~~~~~~~l~~~~~~~~~~eiRlT~~QnLi  347 (510)
T COG0155         268 EKFRREVEPRLGKPFEPARPREFTGNGDHIGWVPQKDGLWHLGLAVPNGRLKAEGLIPLATEAEEIGFGEIRLTPNQNLI  347 (510)
T ss_pred             HHHHHHHHHhhCcccCccccccccCCCCceeEEEcCCCcEEEEEecceeeecCccchHHHHHHHHHhhccEEeccCcceE
Confidence            99999999999999999887777888999999999999999999999999999999999999999996 89999999999


Q ss_pred             EecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEE
Q 008202          464 LCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRV  543 (574)
Q Consensus       464 l~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~i  543 (574)
                      |+||++++++.|.+.|.+.||.+  +.++++++++||+|+|+|++|++||++.++.|++++++.++..++    +++|||
T Consensus       348 i~~v~~~~~~~i~~~l~~~Gl~t--~~~~l~~~~~AC~G~p~C~lA~aet~~~a~~i~~~l~~~~~~~~~----~i~i~i  421 (510)
T COG0155         348 IPNVPEAELEAILRILAALGLVT--APSSLRRNSIACVGLPTCALALAETERDAPRIIARLEDLLDKHGL----PITLHI  421 (510)
T ss_pred             ecCCCHHHHHHHHHHHHHcCCCC--CCcchhhhcccCCCCCchhhhHhhHHHHHHHHHHHHHhhhcccCC----ceeEEe
Confidence            99999999999999999999998  357788999999999999999999999999999999999877665    599999


Q ss_pred             ecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202          544 TGCPNGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       544 SGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      |||||+|++|++++|||+|+.++.||||+
T Consensus       422 sGCpn~Ca~~~~a~Igl~G~~~~~y~v~l  450 (510)
T COG0155         422 SGCPNGCGRPHLAEIGLVGKAKGGYQVYL  450 (510)
T ss_pred             ccCcchhcCcccCceeEeeccCcceEEEe
Confidence            99999999999999999999999999997

>PLN02431 ferredoxin--nitrite reductase

Probab=100.00  E-value=1.6e-93  Score=793.98  Aligned_cols=446  Identities=25%  Similarity=0.394  Sum_probs=385.6

Q ss_pred             CCCCChhhhhhhccCCCcc---chHHHhhh-cCCCCCh-----hHHH-HhhhceeEeeccCcccCCccceEEEEEEcCCc
Q 008202           68 ETKRSKVEIIKEQSNFIRY---PLNEELLT-DAPNVNE-----SATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCG  137 (574)
Q Consensus        68 ~~k~~~~E~~K~~~~~l~~---~~~~~~~~-~~~~~~~-----~~~~-~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG  137 (574)
                      .+|+||+|++|.+++||.-   ..+++++. ..++|++     +|+. +|||+|+|.|+.+.     +++||+|||+|+|
T Consensus        72 ~~~ln~~E~~K~~~~~~~~~~~~~i~~~a~~g~~~i~~~~~~~~d~~~r~kw~Gl~~~~~~~-----~~~fMlRvRiPgG  146 (587)
T PLN02431         72 RKGINPQEKVKLEKEPMKLFMENGIEELAKTPFEEIDKSKLSKDDIDVRLKWLGLFHRRKHQ-----YGRFMMRLKLPNG  146 (587)
T ss_pred             cccCCHHHHhhcccCcccccchhhHHHHHhcChhhcCcccCChHHHHhhhhheeeeeecCCC-----CCceEEEEecCCc
Confidence            3579999999999999973   13455653 4577877     8875 89999999886542     3689999999999


Q ss_pred             cccHHHHHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCchhh
Q 008202          138 KVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDY  214 (574)
Q Consensus       138 ~lt~~ql~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~~~~  214 (574)
                      .||++|+++|++||++|| +|+++||||||||||||+.+|+++++++| +++| ++.++|||++|||++||.. .|+.++
T Consensus       147 ~lt~~Qlr~la~ia~~yg~~G~i~iTtRqniQl~gI~~ed~p~i~~~L-~~vGL~t~~a~gd~vRNI~~~P~aG~~~~e~  225 (587)
T PLN02431        147 VTTSAQTRYLASVIEKYGEDGCADVTTRQNWQIRGVVLPDVPAILKGL-EEVGLTSLQSGMDNVRNPVGNPLAGIDPHEI  225 (587)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCeEEEecCcceEeCCCCHHHHHHHHHHH-HHcCCCchhccCCCCCCcccCCCCCCCcccc
Confidence            999999999999999999 58999999999999999999999999999 8888 7788999999999999974 999999


Q ss_pred             hhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCC
Q 008202          215 LFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS  294 (574)
Q Consensus       215 ~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c  294 (574)
                      .|+++++.+|.++|...                                  |.+||+  |  .+|||||||+||||+++|
T Consensus       226 ~Dt~pla~~l~~~~~~~----------------------------------~~~~~~--~--~~LPrKfkiavsG~~~~~  267 (587)
T PLN02431        226 VDTRPYTNLLSDYITNN----------------------------------GRGNPE--I--TNLPRKWNVCVVGSHDLF  267 (587)
T ss_pred             ccHHHHHHHHHHHhhhc----------------------------------ccCCcc--c--ccCCCCeEEEEecCcccc
Confidence            99999999999887421                                  112343  2  589999999999999999


Q ss_pred             cccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhh
Q 008202          295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYS  373 (574)
Q Consensus       295 ~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~a  373 (574)
                      +.+.+|||||+++.++ |. .||+|+|||++|++.      +..+..++ ||++|++++++++|+++|+++|+|+||+++
T Consensus       268 ~~~~~nDigf~~~~~~-g~-~Gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~v~~av~~~f~d~G~R~~R~ka  339 (587)
T PLN02431        268 EHPHINDLAYMPATKD-GR-FGFNLLVGGFFSPKR------CAEAIPLDAWVPADDVVPLCKAILEAFRDLGTRGNRQKT  339 (587)
T ss_pred             ccccccceEEEEEEEC-Cc-eEEEEEEeCCcCCCC------ccccchhhcccCHHHHHHHHHHHHHHHHHhCCccchhhh
Confidence            9999999999998763 43 599999999998641      33555665 899999999999999999999999999999


Q ss_pred             hHHHHHHHhhhhHHHHHHHHHhC-CCCCCCCC----CCcccccccCCeeeecC-CcEEEEEEeCCCCcCHHHHHHHHHHH
Q 008202          374 RMKYLISSWGIEKFRSVVEQYYG-KKFEPFRQ----LPEWEFKSHLGWHEQGD-GGLFCGLHVDNGRIAGKMKKTLREII  447 (574)
Q Consensus       374 Rlk~li~r~G~e~fr~~ve~~~g-~~~~~~~~----~~~~~~~~~~G~~~q~d-G~~~v~v~vp~Grl~~~~l~~La~la  447 (574)
                      ||+|+|++||+++|+++++++++ .+++...+    .+.|...+|+|||+|++ |+|+|++++|+|+|+++||+.||++|
T Consensus       340 Rlk~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~Qk~~G~~~v~v~vp~Grlt~~qL~~LA~lA  419 (587)
T PLN02431        340 RMMWLIDELGVEGFRSEVEKRMPNGELERAASEDLVDKKWERRDYLGVHPQKQEGLSYVGLHVPVGRLQAADMDELARLA  419 (587)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccCCCCcccccccccchhcccceeEEEeeccCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence            99999999999999999998884 45654322    12355678999999985 99999999999999999999999999


Q ss_pred             HHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHH
Q 008202          448 EKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRA  526 (574)
Q Consensus       448 ~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~  526 (574)
                      ++||. +||||++|||+|++|++++++++.++|...|+...  .++.+++++||+|+++|++++.||+.++.+|++++.+
T Consensus       420 ~~yG~g~irlT~~Qni~i~~V~~~~v~~l~~~l~~~g~~~~--~~~~~r~vvACtG~~~C~~ai~eTk~~A~~L~~~l~~  497 (587)
T PLN02431        420 DEYGSGELRLTVEQNIIIPNVPNSKVEALLAEPLLQRFSPN--PGLLLKGLVACTGNQFCGQAIIETKARALKVTEELER  497 (587)
T ss_pred             HHhCCCeEEEcCCCCEEECCCCHHHHHHHHHHHHhcCCCCC--CCCCccceeECCCccccCccHHHHHHHHHHHHHHHHH
Confidence            99997 79999999999999999999999999887787653  4677899999999999999999999999888888765


Q ss_pred             HHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeec----CC----ceEEEE
Q 008202          527 VFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG----PN----SYQVFQ  572 (574)
Q Consensus       527 ~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~----~g----~Y~l~l  572 (574)
                      .+   .+  |.+++||||||||+|++|+++||||+|..    .|    +|+||+
T Consensus       498 ~~---~l--p~k~kI~vSGCpn~C~~~~iaDIG~vG~~~~~~~g~~v~gf~V~l  546 (587)
T PLN02431        498 LV---EV--PRPVRMHWTGCPNSCGQVQVADIGFMGCMARDENGKAVEGADIFV  546 (587)
T ss_pred             hh---cC--CCCeEEEEECCcccccccccccEEEEeeeeecCCCccceEEEEEE
Confidence            32   34  47899999999999999999999999952    12    599997

>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed

Probab=100.00  E-value=3.3e-91  Score=770.77  Aligned_cols=444  Identities=28%  Similarity=0.472  Sum_probs=386.6

Q ss_pred             CCCCChhhhhhhccCCCc-cchHHHhhhc-CCCCChhHHH-HhhhceeEee-ccCcccCCccceEEEEEEcCCccccHHH
Q 008202           68 ETKRSKVEIIKEQSNFIR-YPLNEELLTD-APNVNESATQ-LIKFHGSYQQ-YNRDERGAKSYSFMLRTKNPCGKVSNQL  143 (574)
Q Consensus        68 ~~k~~~~E~~K~~~~~l~-~~~~~~~~~~-~~~~~~~~~~-~~k~~G~y~Q-~~r~~r~~~~~~fmvRiripgG~lt~~q  143 (574)
                      .+|+||+|++|.+++||+ ...+++++.. .++++++|+. ++||+|+|.| ++.       ++||||||+|+|.||++|
T Consensus         9 ~~~~n~~E~~K~~~~~~~~~~~i~~~a~~~~~~~~~~d~~~~~~~~G~~~~~~~~-------g~fmvRvrip~G~lt~~Q   81 (513)
T PRK09566          9 GKKLNKIEKNKAEKDGLAVKDELEKFAQIGWEAMDETDLELRLKWLGMFWRPVTP-------GKFMLRLRVPNGILTSEQ   81 (513)
T ss_pred             cccCCHHHHhhcccCHHHHHHHHHHHHHhCcccCCHHHHhhhheeeEEeeEcCCC-------CeEEEEeccCCccCCHHH
Confidence            578999999999999996 3345566543 4678888876 8999999955 332       589999999999999999


Q ss_pred             HHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCchhhhhHHHH
Q 008202          144 YLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYLFAQKT  220 (574)
Q Consensus       144 l~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~~~~~d~~~l  220 (574)
                      |+.|+++|++|| +|+++||||||||||||+.+++++++++| .+.| .+.++|||++|||++||.. .|+.++.|++++
T Consensus        82 lr~la~ia~~yg~~g~i~lTtRQniql~~i~~~dl~~i~~~L-~~~GL~~~~~~~d~vRnv~~~P~ag~~~~e~~D~~~l  160 (513)
T PRK09566         82 LRVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNRL-KAVGLTSVQSGMDNVRNITGSPVAGIDPDELIDTRPL  160 (513)
T ss_pred             HHHHHHHHHHhCCCCeEEEEcccceeecCCcHHHHHHHHHHH-HHcCCCchhccCCCCCCccCCCCCCCCcchhhHHHHH
Confidence            999999999999 69999999999999999999999999999 7777 6678999999999999974 899999999999


Q ss_pred             HHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccC
Q 008202          221 AENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTN  300 (574)
Q Consensus       221 a~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~  300 (574)
                      +.+|.++|..+                                  ..++++    ..+|||||||+||||+++|+++.+|
T Consensus       161 a~~l~~~~~~~----------------------------------~~~~~~----~~~LPrKfki~vsGc~~~c~~~~i~  202 (513)
T PRK09566        161 TQKLQDMLTNN----------------------------------GEGNPE----FSNLPRKFNIAIAGGRDNSVHAEIN  202 (513)
T ss_pred             HHHHHHHhhcc----------------------------------cCCCCc----ccCCCCceEEEEECCCCCccccccc
Confidence            99999987531                                  001233    2579999999999999999999999


Q ss_pred             CEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Q 008202          301 DIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLI  379 (574)
Q Consensus       301 DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li  379 (574)
                      ||||+++.++ |. .||+||+||++|..+      |+++..++ +|+++++++++++|+++|+++|+|+||+++||+++|
T Consensus       203 DiG~~~~~~~-~~-~gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~~~~av~~~f~~~g~r~~r~k~Rl~~lv  274 (513)
T PRK09566        203 DIAFVPAYKD-GV-LGFNVLVGGFFSSQR------CAYAIPLNAWVKPDEVVRLCRAILEVYRDNGLRANRQKGRLMWLI  274 (513)
T ss_pred             ceEEEEEEEC-Ce-eEEEEEEecccCCCC------CcCceeeeeecCHHHHHHHHHHHHHHHHHhCCcccchhhhHHHHH
Confidence            9999998763 43 699999999998642      56788886 899999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHhCCCCCCCCC--CCcccccccCCeeeec-CCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEE
Q 008202          380 SSWGIEKFRSVVEQYYGKKFEPFRQ--LPEWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVR  455 (574)
Q Consensus       380 ~r~G~e~fr~~ve~~~g~~~~~~~~--~~~~~~~~~~G~~~q~-dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~ir  455 (574)
                      ++||+++|++++++++++++.+..+  ...|...+|+||++|+ +|+|++++++|+|+++++|++.||++|++||. +||
T Consensus       275 ~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~G~lt~~~l~~la~ia~~yg~g~ir  354 (513)
T PRK09566        275 DEWGIEKFRAAVEAQFGPPLLTAAPGDEIDWEKRDHIGVHPQKQAGLNYVGLHVPVGRLYAEDMFELARLAEVYGSGEIR  354 (513)
T ss_pred             HHhhHHHHHHHHHHHhCcccCCcccchhhccccccccceeecCcCCeEEEEEEcCCccCCHHHHHHHHHHHHHhCCCeEE
Confidence            9999999999999999987654332  2345667899999998 49999999999999999999999999999997 799


Q ss_pred             EccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCC
Q 008202          456 ITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKY  535 (574)
Q Consensus       456 lT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~  535 (574)
                      ||++|||+|++|+++++++|.+++...++...  .++.+++++||+|+++|+++++||+.++..|+++|++.   .++  
T Consensus       355 lT~~Qni~l~~i~~~~v~~l~~~~~~~~~~~~--~~~~~~~~vaC~G~~~C~~a~~dT~~~a~~l~~~l~~~---~~l--  427 (513)
T PRK09566        355 LTVEQNVIIPNIPDENLETFLAEPLLQKFSLE--PGPLARGLVSCTGNQYCNFALIETKNRALALAKELDAE---LDL--  427 (513)
T ss_pred             EcCCCCEEEeCCCHHHHHHHHHHHhhccCCCC--CCccccCceeCcCcccccccHhhHHHHHHHHHHHHHHh---cCC--
Confidence            99999999999999999999998766666543  35677899999999999999999999999888888754   334  


Q ss_pred             CCceEEEEecCCCcCCCCCcccEEEEeec---C----CceEEEE
Q 008202          536 NESVVIRVTGCPNGCARPYMAELGLVGDG---P----NSYQVFQ  572 (574)
Q Consensus       536 ~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~---~----g~Y~l~l  572 (574)
                      |.+++||||||||+|++|+++||||+|..   +    ..|+||+
T Consensus       428 p~~~kI~iSGCpn~C~~~~iaDIG~~G~~~~~dg~~~~g~~i~l  471 (513)
T PRK09566        428 PQPVRIHWTGCPNSCGQPQVADIGLMGTKARKNGKTVEGVDIYM  471 (513)
T ss_pred             CCceEEEEECChhhhhchhhCCEEEEEEEeecCCcccceEEEEe
Confidence            47899999999999999999999999963   1    4699987

>TIGR02435 CobG precorrin-3B synthase

Probab=100.00  E-value=1.2e-77  Score=642.68  Aligned_cols=365  Identities=21%  Similarity=0.334  Sum_probs=316.9

Q ss_pred             eEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecC
Q 008202          127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAP  205 (574)
Q Consensus       127 ~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~ac  205 (574)
                      .||+|||+|+|+||++||++|+++|++||+|+||||||||||||||+.+ ++++++.| .+.| ++.++|||.+|||++|
T Consensus        17 g~mvRvr~p~G~lt~~ql~~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l-~~~GL~~~~~~g~~~Rnv~~c   94 (390)
T TIGR02435        17 GLLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQAL-LAAGLGAAGAAADDIRNIEVS   94 (390)
T ss_pred             eeEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHH-HHCCCCCccccCCcccccccC
Confidence            5899999999999999999999999999999999999999999999999 99999999 8888 4558999999999999


Q ss_pred             CCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceE
Q 008202          206 PAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFK  284 (574)
Q Consensus       206 p~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfk  284 (574)
                      |.+ .|..++.|+++++.+|.+.|...                                      ++    ..+||+|||
T Consensus        95 p~~g~~~~~~~dt~~la~~l~~~l~~~--------------------------------------~~----~~~LPrKfk  132 (390)
T TIGR02435        95 PLAGIDPGEIADTRPLAAELRAALENE--------------------------------------RA----LLELPPKFS  132 (390)
T ss_pred             ccccCCCccccchHHHHHHHHHHHhcC--------------------------------------hh----hhcCCCceE
Confidence            975 66788999999999999887421                                      11    247999999


Q ss_pred             EEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHHHHh
Q 008202          285 VAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQREN  364 (574)
Q Consensus       285 I~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~  364 (574)
                      |+||||+++|+.+++|||||+++.++ +. .||+|++||+.+.           +..+++|+++++++++++++++|+++
T Consensus       133 i~vsgc~~~c~~~~~~DIG~~~~~~~-~~-~gf~v~vGG~~~~-----------~~~~~~v~~~~v~~~v~av~~~~~~~  199 (390)
T TIGR02435       133 VAIDGGGRLVLLGDTADVRLQALTTG-AG-VAWVVSLAGISTS-----------ARSLVTVAPDAAVPVAVALLRVFVEL  199 (390)
T ss_pred             EEEECCCccccCCCCCCEEEEEEecC-CE-EEEEEEEecCCCC-----------CCceEEeCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998864 33 5999999996432           22347899999999999999999999


Q ss_pred             CCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCCCCC-----CCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHHH
Q 008202          365 GRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPF-----RQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKM  439 (574)
Q Consensus       365 g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~~-----~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~  439 (574)
                      |+     ++|+||++++||+|+|++++++.  .++.+.     .+.+++...+++||++|+++.|++++++|+|+|++++
T Consensus       200 g~-----~aR~k~li~~~g~e~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~~~~v~~~~p~G~i~~~~  272 (390)
T TIGR02435       200 GG-----AARGRDLDDAFLFALALELVEDS--RPLIPDAAEGEAPRPAVDAAAPLGLHPQGDAGVTLGAGLALGQLTAAQ  272 (390)
T ss_pred             Cc-----ccHHHHHHHHhHHHHHHHHHHhc--cccCCCccccccccCcccccCCCceeecCCCCeEEEEecCccccCHHH
Confidence            87     59999999999999999999983  232221     1112233457999999999779999999999999999


Q ss_pred             HHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHH
Q 008202          440 KKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIP  518 (574)
Q Consensus       440 l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~  518 (574)
                      ++.|+++|++||. +||+|+||||+|++|++++++++.+.|.+.|+.... .++. .+++||+|+++|+++++||++++.
T Consensus       273 l~~la~ia~~~g~~~irlT~~Q~l~i~~i~~~~~~~~~~~l~~~gl~~~~-~~~~-~~v~aC~G~~~C~~~~~~t~~~a~  350 (390)
T TIGR02435       273 LRGLAQLAQALGDGDLRLTPWRALLVLGLPPERADAAQRALAALGLVTSA-SDPR-ARIIACTGAPGCASALADTRADAE  350 (390)
T ss_pred             HHHHHHHHHHhCCCeEEEcCCcceEEcCCCHHHHHHHHHHHHHCCCCcCC-CCCe-eeEEECCCccccccchhhHHHHHH
Confidence            9999999999997 799999999999999999999999999999998743 3454 558999999999999999999887


Q ss_pred             HHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCC
Q 008202          519 DILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPN  566 (574)
Q Consensus       519 ~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g  566 (574)
                      +|.+++...         .+++||||||||+|++|+++||||+|..+|
T Consensus       351 ~l~~~~~~~---------~~~~i~vSGC~n~C~~~~~adiG~~G~~~g  389 (390)
T TIGR02435       351 ALAAYCEPT---------APITVHLSGCAKGCAHPGPAAITLVAAGAG  389 (390)
T ss_pred             HHHHHhccc---------CCcEEEEeCCcccccCCCCCCEEEEecCCC
Confidence            766554221         139999999999999999999999998665

An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.

>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit

Probab=100.00  E-value=3.4e-43  Score=368.43  Aligned_cols=233  Identities=18%  Similarity=0.312  Sum_probs=200.2

Q ss_pred             HHHhhhce------eEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCH
Q 008202          104 TQLIKFHG------SYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDL  177 (574)
Q Consensus       104 ~~~~k~~G------~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l  177 (574)
                      +.+|||||      ++.+.+++     .++||||+++|+ .+|++||+.|++||++||+|.+|||||||||||||+.+++
T Consensus         6 ~~~~~~~~~~~~gv~~~~~~~~-----~~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~~edl   79 (341)
T TIGR02066         6 YGKWKYHEVVKPGVIKHVAESG-----DVIYTVKAGTPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKI   79 (341)
T ss_pred             ccceEEcccCCCcEEEEECCCC-----CcEEEEEeCCCc-ccCHHHHHHHHHHHHHhCCCeEEEeccCCEEEecCCHHHH
Confidence            45799999      77775443     258999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCc-ceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhh
Q 008202          178 KTVMRSIIRSMGSTLGACGDLNR-NVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVK  255 (574)
Q Consensus       178 ~~i~~~L~~~~g~t~~a~gd~~R-NV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~  255 (574)
                      ++++++| ++.|++.+++|+.+| ||++||+. .|+.+..|+.+++..|.+.|...                        
T Consensus        80 ~~i~~~L-~~~Gl~~~~~G~~vrrni~aC~G~~~C~~a~~dt~~l~~~l~~~l~~~------------------------  134 (341)
T TIGR02066        80 QPLIDEL-EEVGFPVGGTGDAVKGNIVHTQGWLHCHIPAIDASGIVKAVMDELYEY------------------------  134 (341)
T ss_pred             HHHHHHH-HhccCCCCCCCCccccccccCcCCCCCCcchhchHHHHHHHHHHHHHH------------------------
Confidence            9999999 888988888999888 99999985 99999999999998887665310                        


Q ss_pred             hccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec--------------------------
Q 008202          256 ARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD--------------------------  309 (574)
Q Consensus       256 ~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~--------------------------  309 (574)
                                        |....||+||||+|||||++|+.++++||||++...                          
T Consensus       135 ------------------~~~~~lP~KfKI~vSGC~~~C~~~~~~Dig~~g~~~~~p~~~~~~~~~~c~~~~Cv~~CP~~  196 (341)
T TIGR02066       135 ------------------FTDHKLPAMVRISLSCCANMCGGVHASDIAIVGIHRKPPKINHEAVRNVCEIPSVVAACPTG  196 (341)
T ss_pred             ------------------HhcccccccceeccccccccccchhhccccccccccCCcEEcHHHHHhhcCCCceEeeCchh
Confidence                              112469999999999999999999999999998631                          


Q ss_pred             ------CC-----------------------------CcceeEEEEEccCCCCcCCccccccccccccC-CCCh-----h
Q 008202          310 ------EN-----------------------------GEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----E  348 (574)
Q Consensus       310 ------~~-----------------------------g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~-----e  348 (574)
                            ++                             ++..||.|++||++|++.    ..|++|+.+. +++.     +
T Consensus       197 Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~vGG~~g~~~----~~p~lg~~~~~~~~~~~~~~e  272 (341)
T TIGR02066       197 ALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWVGGKLSNAR----VMPELSKVVVPWIPNNPPRWP  272 (341)
T ss_pred             hceecccCCCCceeeccccCCcCCchHHhCchhhccCCCCCeEEEEEccccCccc----cCCcccceecccccCCCcchH
Confidence                  10                             223699999999987421    1389998885 7776     7


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHH
Q 008202          349 DILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ  393 (574)
Q Consensus       349 ev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~  393 (574)
                      ++++++++++++|+++|.    ++|||+++|+|+|+++|++++..
T Consensus       273 ~~~~~i~~i~~~~~~~~~----~~eR~g~~i~RvG~~~f~~~v~~  313 (341)
T TIGR02066       273 ELVAYVKKILEAWKANAK----KHERLIEWVERIGWERFFELVGL  313 (341)
T ss_pred             HHHHHHHHHHHHHHHcCc----CCccHHHHHHHHhHHHHHHHHCC
Confidence            999999999999999987    36999999999999999999873

This model describes the beta subunit of sulfite reductase.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=1.7e-39  Score=375.89  Aligned_cols=205  Identities=22%  Similarity=0.338  Sum_probs=189.3

Q ss_pred             ccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCccee
Q 008202          124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVL  203 (574)
Q Consensus       124 ~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~  203 (574)
                      ++++||+|+|+|+|++|++||++|+++|++||.|++|||+||||||+||+++++++++++| ...|++ .++|+.+|||+
T Consensus       550 k~g~~~v~~~~~~G~lt~~ql~~la~ia~~yg~~~i~iT~~Q~i~l~gi~~~~l~~i~~~L-~~~gl~-~~~g~~~r~v~  627 (785)
T TIGR02374       550 KDGTYSVIPRMYGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDL-KMPGYE-HAYGKALRTVK  627 (785)
T ss_pred             cCCceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEcCCceEEECCCCHHHHHHHHHHH-HhCCCC-CCCCCCccCcc
Confidence            4579999999999999999999999999999999999999999999999999999999999 788876 88999999999


Q ss_pred             cCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCc
Q 008202          204 APPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRK  282 (574)
Q Consensus       204 acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrK  282 (574)
                      +||+ ++|..++.|+++++.+|.+.+.                                              ...+|+|
T Consensus       628 aC~G~~~C~~g~~ds~~la~~l~~~~~----------------------------------------------~~~~p~k  661 (785)
T TIGR02374       628 TCVGSQWCRYGNQDSVQLAIQLERRYE----------------------------------------------GLRTPHK  661 (785)
T ss_pred             cCCCccccCcchhhHHHHHHHHHHHhc----------------------------------------------ccCCCCc
Confidence            9998 4999999999999999977642                                              1458999


Q ss_pred             eEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHH
Q 008202          283 FKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQ  361 (574)
Q Consensus       283 fkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~  361 (574)
                      |||+|||||++|+.++++||||++..      .||+|||||+.|+.       |++|+.+. ++++|++++++++++++|
T Consensus       662 ~ki~vSGC~~~C~~~~~~DiG~i~~~------~g~~v~vGG~~g~~-------~~~a~~l~~~~~~e~v~~~i~~~l~~y  728 (785)
T TIGR02374       662 IKIGVSGCERECAEAAGKDVGVIATE------KGWNLYVGGNGGTH-------PRHGDLLAVDEDEETLIGYIDRFLQYY  728 (785)
T ss_pred             eEEEEECCccccchhhhCcEEEEEec------CCeEEEECCcCCCC-------CcceeeecCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999864      37999999998865       89999997 689999999999999999


Q ss_pred             HHhCCCCcchhhhHHHHHHHhhhhHHHHHHHH
Q 008202          362 RENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ  393 (574)
Q Consensus       362 rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~  393 (574)
                      ++++++    .+|+++|++|||+++|++.+++
T Consensus       729 ~~~~~~----~er~~~~i~r~G~~~~~~~~~~  756 (785)
T TIGR02374       729 RETADY----LERTAPWLERLGIDHVREVLFE  756 (785)
T ss_pred             HHhCcc----cchHHHHHHHhChHHHHHHHHh
Confidence            999885    6899999999999999999985

>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]

Probab=100.00  E-value=4.7e-39  Score=325.14  Aligned_cols=225  Identities=25%  Similarity=0.420  Sum_probs=201.0

Q ss_pred             hceeEeeccCcccCCccceEEEEEEcCC-ccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHH
Q 008202          109 FHGSYQQYNRDERGAKSYSFMLRTKNPC-GKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRS  187 (574)
Q Consensus       109 ~~G~y~Q~~r~~r~~~~~~fmvRiripg-G~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~  187 (574)
                      ..|+..+.+.        +|++||++|. |.+++++|++|++||++||+|.|+||+||+++|++|+.++++++.++| ++
T Consensus        19 ~~Gvi~r~~~--------t~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L-~~   89 (317)
T COG2221          19 GYGVIKRRDG--------TYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEEL-RE   89 (317)
T ss_pred             CCceeeeccC--------cEEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHH-HH
Confidence            4578877653        6999999998 899999999999999999999999999999999999999999999999 89


Q ss_pred             cCCCCCCCCCCCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCC
Q 008202          188 MGSTLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF  266 (574)
Q Consensus       188 ~g~t~~a~gd~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~  266 (574)
                      +|+..++.|+.+|||++|+++ .|..++.|+.+++++|.+.|.                                     
T Consensus        90 iG~~~G~~G~~vr~i~aC~G~~~C~~a~~Dt~~la~~l~e~f~-------------------------------------  132 (317)
T COG2221          90 IGLPVGSTGPAVRAIVACPGPRTCETALYDTTELARRLEEEFL-------------------------------------  132 (317)
T ss_pred             cCCCCCCcchhhhhhhcCcCcccccccccChHHHHHHHHHHhh-------------------------------------
Confidence            999999999999999999997 899999999999999987753                                     


Q ss_pred             CCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecC------------------------------------
Q 008202          267 PDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE------------------------------------  310 (574)
Q Consensus       267 ~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~------------------------------------  310 (574)
                               ...+|.||||++|||||+|+.+..+||||+++.+.                                    
T Consensus       133 ---------~~~~P~KfKI~vsGCPn~C~r~~~~DigivGv~~P~~~~E~c~gc~~cv~~C~~gAI~~~~~~l~id~~~C  203 (317)
T COG2221         133 ---------EVPVPYKFKIAVSGCPNDCTRPQAHDIGIVGVWKPKVDEELCRGCGKCVKVCPTGAITWDGKKLKIDGSKC  203 (317)
T ss_pred             ---------cCCCCceEEEEeecCCcccccccccceeEEEeecCccCHHHhchhHhHHHhCCCCceeeccceEEEehhhc
Confidence                     13589999999999999999999999999998751                                    


Q ss_pred             ---------------CCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhh
Q 008202          311 ---------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSR  374 (574)
Q Consensus       311 ---------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aR  374 (574)
                                     .++-.|+.|+|||.+|+.      .|+.+.++- +.++|++++++++++++|+++++..   ++|
T Consensus       204 i~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk~Gr~------~~r~g~~~~~~~~~dei~~ii~~~~e~~~~~~~~~---~~R  274 (317)
T COG2221         204 IGCGKCIRACPKAAFRGEKVGIAILVGGKTGRE------LGRVGKPLVPVEDEDEIIDIIKKTIEVWREYAEKP---GER  274 (317)
T ss_pred             cCccHHhhhCChhhcchhhccEEEEEccccCCc------cccccccccccCCHHHHHHHHHHHHHHHHHhcccc---cch
Confidence                           234469999999999875      358888885 5699999999999999999999842   459


Q ss_pred             HHHHHHHhhhhHHHHHHHHHhCC
Q 008202          375 MKYLISSWGIEKFRSVVEQYYGK  397 (574)
Q Consensus       375 lk~li~r~G~e~fr~~ve~~~g~  397 (574)
                      |.++|+|.|+++|++++...+..
T Consensus       275 igd~I~r~G~~kF~e~i~~~~~~  297 (317)
T COG2221         275 IGDFIDRVGFEKFLEEILREVKQ  297 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHhhcc
Confidence            99999999999999999875543

>TIGR02912 sulfite_red_C sulfite reductase, subunit C

Probab=100.00  E-value=7.5e-39  Score=334.02  Aligned_cols=230  Identities=19%  Similarity=0.293  Sum_probs=198.4

Q ss_pred             HHHHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHH
Q 008202          103 ATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMR  182 (574)
Q Consensus       103 ~~~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~  182 (574)
                      +...+|-.|++.|++++       +||+|+|+|+|++|++|++.|+++|++||+|++|||||||||||||+.++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~g-------~~~vrv~~p~G~lt~~qlr~la~ia~~yg~g~~~~TtrQ~i~l~~i~~~~~~~v~~   75 (314)
T TIGR02912         3 NTKALKKNAFRVTKVRG-------KTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNK   75 (314)
T ss_pred             cHHHHhhCCeEEeecCC-------ceEEEEEccceecCHHHHHHHHHHHHHhCCCeEEEecccceEecCcCHHHHHHHHH
Confidence            35678889999999874       89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc----C-----CCCCCCCCCCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChh
Q 008202          183 SIIRSM----G-----STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPE  252 (574)
Q Consensus       183 ~L~~~~----g-----~t~~a~gd~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~  252 (574)
                      .| ++.    +     ...+.+|+.+|||++||+. .|..++.|+++++.+|.+.+.                       
T Consensus        76 ~L-~~~~~gl~~~~~~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~-----------------------  131 (314)
T TIGR02912        76 AL-QPIIEGLEINQEDVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIEKAVF-----------------------  131 (314)
T ss_pred             HH-HHHhhcccccccccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHHHHhh-----------------------
Confidence            99 542    2     3346688999999999984 999999999999999976542                       


Q ss_pred             hhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecC----------------------
Q 008202          253 VVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE----------------------  310 (574)
Q Consensus       253 ~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~----------------------  310 (574)
                                               .+|+||||+|||||++|..+.++||||++....                      
T Consensus       132 -------------------------~~~~k~ki~iSGCp~~C~~~~~~DiG~~g~~~~~~d~~~C~~Cg~C~~~Cp~~a~  186 (314)
T TIGR02912       132 -------------------------PNDYHVKIALTGCPNDCAKARMHDFGIIGMTEPQYDADRCIGCGACVKVCKKKAV  186 (314)
T ss_pred             -------------------------cCCceEEEEEeCCCchhhHHHHhhcccccccCCceeCccCCcchHHHHhcChhhc
Confidence                                     257899999999999999999999999875210                      


Q ss_pred             ---------------------------------CCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHH
Q 008202          311 ---------------------------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKA  356 (574)
Q Consensus       311 ---------------------------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~a  356 (574)
                                                       .+...+|.+++||..|+.+      |+++..+. +++.+++++++++
T Consensus       187 ~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~~~~~v~~gg~~g~~~------p~~~~~~~~~~~~~~v~~~~~~  260 (314)
T TIGR02912       187 GALSFENYKVVRDHSKCIGCGECVLKCPTGAWTRSEEKYYKLRLMGRTGKKN------PRLGEDFIKWVDEDSIVKIILN  260 (314)
T ss_pred             CceeccCCeEEeCCCcCcCcchhhhhCCHhhcccCcCCcEEEEEcCccCCCC------cchhhhhhhhcCcchhHHHHHH
Confidence                                             0112369999999988642      88888774 7999999999999


Q ss_pred             HHHHHHHhCCCCc-chhhhHHHHHHHhhhhHHHHHHHHH
Q 008202          357 IVVTQRENGRRDD-RKYSRMKYLISSWGIEKFRSVVEQY  394 (574)
Q Consensus       357 i~~~~rd~g~R~~-R~~aRlk~li~r~G~e~fr~~ve~~  394 (574)
                      ++++|++|+++.+ |++|||+++|+|||+++|++++.+.
T Consensus       261 ~~~~~~~~~~~~~~~~~eR~~~~i~r~g~~~~~~~~~~~  299 (314)
T TIGR02912       261 TYDYITEYIDKNAPGGKEHIGYIVDRTGYQEFKKWALKD  299 (314)
T ss_pred             HHHHHHHHHhccCCCccchHHHHHHHhhHHHHHHHHhhh
Confidence            9999999987765 5789999999999999999988543

Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.

>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit

Probab=100.00  E-value=2.8e-38  Score=336.48  Aligned_cols=271  Identities=18%  Similarity=0.255  Sum_probs=217.2

Q ss_pred             CCCChhhhhhhccCCCc------------cchHHHhhhcCCCCChhHHHHhh-hceeEeecc--CcccCCccceEEEEEE
Q 008202           69 TKRSKVEIIKEQSNFIR------------YPLNEELLTDAPNVNESATQLIK-FHGSYQQYN--RDERGAKSYSFMLRTK  133 (574)
Q Consensus        69 ~k~~~~E~~K~~~~~l~------------~~~~~~~~~~~~~~~~~~~~~~k-~~G~y~Q~~--r~~r~~~~~~fmvRir  133 (574)
                      +=+|.|-.||+...+..            +.+-..+.+..+++...-+.-+- .-|+|-|.-  .+.=++..+.|||||+
T Consensus         8 pwps~v~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wkgg~v~v~gyg~GVigr~~~~~~~~p~~~~~~tvRv~   87 (402)
T TIGR02064         8 PWPSFVSEIKKTAAYRADYQVPVDPEDLLGVLELSYDERKTHWKGGIVSVFGYGGGVIGRYSDQGEKFPGVAEFHTVRVA   87 (402)
T ss_pred             CCchHHHHHHHhccccccccccchhHHHHHHHhhhhhcCcccccCceEeeeecCCEEEEEecCCcccCCCcCeEEEEEEe
Confidence            34677777777765433            11112223445677744444444 367888832  2322345579999999


Q ss_pred             cCCcc-ccHHHHHHHHHHHHHhCCCeEEcCC-CCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCC-CC
Q 008202          134 NPCGK-VSNQLYLTMDDLADQFGIGTLRLTT-RQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAP-LV  210 (574)
Q Consensus       134 ipgG~-lt~~ql~~la~iA~~yG~g~i~lTt-RQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~-~~  210 (574)
                      +|+|. +|++||+.|++||++||.|.+++|+ ||||+|+||+.+++++++++| .+.|++++++|+.+||+++|+++ .|
T Consensus        88 ~P~G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~gv~~e~le~i~~eL-~~~G~dlggsG~~vRti~aC~G~~~C  166 (402)
T TIGR02064        88 QPSGKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLGTQTPQLQEIFEEL-TNLGTDLGGSGSNLRTPESCVGPARC  166 (402)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcCCCHHHHHHHHHHH-hhcccCCCCCCCCccceecCCCcccC
Confidence            99998 6999999999999999999999985 899999999999999999999 78898889999999999999985 99


Q ss_pred             chhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcC
Q 008202          211 RKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVP  290 (574)
Q Consensus       211 ~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc  290 (574)
                      ..+..|+++++.+|.+.|...                                          +....||+||||+||||
T Consensus       167 ~~a~~DT~~l~~~L~~~~~~~------------------------------------------~~~~~lP~KfKI~vSGC  204 (402)
T TIGR02064       167 EFACYDTLKACYELTMEYQDE------------------------------------------LHRPAFPYKFKFKFSGC  204 (402)
T ss_pred             CCcccccHHHHHHHHHHHHhh------------------------------------------hhhccCCcccccccccc
Confidence            999999999999998876420                                          01235899999999999


Q ss_pred             CCCCcccc-cCCEEEEEEecC-------------------------------------C---------------------
Q 008202          291 TDNSVDIL-TNDIGVVVVSDE-------------------------------------N---------------------  311 (574)
Q Consensus       291 ~~~c~~~~-~~DIG~va~~~~-------------------------------------~---------------------  311 (574)
                      ||+|+.+. ++||||++.+.+                                     +                     
T Consensus       205 pn~C~~~~~~~DIG~iG~~r~~~~id~~~~~~~~~~cg~~~~~~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~  284 (402)
T TIGR02064       205 PNDCVAAIARSDFAVIGTWKDDIKVDQEAVKAYIAGWGKFDIENEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKM  284 (402)
T ss_pred             ccccccceeccCceeeccccCCccccHHHHHHHHhhccccccchhHhhcCCccccccCCCceEEEcchhcCcCccccccC
Confidence            99999999 999999986431                                     0                     


Q ss_pred             ------CcceeEEEEEccCCCCcCCccccccccccccC-CC----ChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Q 008202          312 ------GEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YV----PKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLIS  380 (574)
Q Consensus       312 ------g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v----~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~  380 (574)
                            |...||.|++||+.|..     ..|++++.+. |+    +.+++.+++++|+++|+++|.    ++|||+++|+
T Consensus       285 p~a~~~g~~~G~~ilvGGk~~~~-----~g~~lg~~~~~f~~~e~~~eei~~~i~~i~~~~~e~g~----~~ER~g~~i~  355 (402)
T TIGR02064       285 PKALHPGDERGVTILIGGKAPIL-----DGAQMGWVVVPFVEAEEPYDEIKELVEKIIDWWDEEGK----NRERIGETIK  355 (402)
T ss_pred             cccccCCCCCeEEEEEccCCCCC-----CCCcccceecccccCCCCHHHHHHHHHHHHHHHHHhCC----ccccHHHHHH
Confidence                  12468999999998632     1289998885 77    568999999999999999986    5899999999


Q ss_pred             HhhhhHHHHHH
Q 008202          381 SWGIEKFRSVV  391 (574)
Q Consensus       381 r~G~e~fr~~v  391 (574)
                      |+|+++|++++
T Consensus       356 R~G~~~f~~~i  366 (402)
T TIGR02064       356 RLGLQKFLEVI  366 (402)
T ss_pred             HhCHHHHHHHH
Confidence            99999999887

This model describes the alpha subunit of sulfite reductase.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=3.9e-38  Score=365.23  Aligned_cols=205  Identities=19%  Similarity=0.284  Sum_probs=186.9

Q ss_pred             ccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcce
Q 008202          124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNV  202 (574)
Q Consensus       124 ~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV  202 (574)
                      ++++||||+|+|+|++|++||+.|+++|++|| +++|||+||||||+||+++++++++++| .+.| .+.+++|+.+|||
T Consensus       561 k~g~~~v~~~~p~G~lt~~ql~~ia~iA~kyg-~~~~iT~~Q~i~L~~i~~~~l~~v~~~L-~~~Gl~~~~~~g~~vr~v  638 (847)
T PRK14989        561 KDGTYSVIPRSAGGEITPEGLMAVGRIAREFN-LYTKITGSQRIGLFGAQKDDLPEIWRQL-IEAGFETGHAYAKALRMA  638 (847)
T ss_pred             cCCeEEEEEEcCCcEeCHHHHHHHHHHHHHHC-CcEEEcCCCceEeCCCCHHHHHHHHHHH-HHCCCCcCCCCCCCcCce
Confidence            56899999999999999999999999999999 4799999999999999999999999999 8888 4445668999999


Q ss_pred             ecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCC
Q 008202          203 LAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPR  281 (574)
Q Consensus       203 ~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPr  281 (574)
                      ++||+. +|+.++.|++++|.+|.+++.                                              ...+|+
T Consensus       639 ~aC~G~~~C~~g~~dt~~la~~l~~~~~----------------------------------------------~~~~P~  672 (847)
T PRK14989        639 KTCVGSTWCRYGVGDSVGLGVELENRYK----------------------------------------------GIRTPH  672 (847)
T ss_pred             eeCCCCCccccccccHHHHHHHHHHHhc----------------------------------------------cCCCCC
Confidence            999984 999999999999999877642                                              145899


Q ss_pred             ceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHH
Q 008202          282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVT  360 (574)
Q Consensus       282 KfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~  360 (574)
                      ||||+|||||++|+++.++||||++..      .||+||+||+.|++       |++++.+. +++++++++++++++++
T Consensus       673 k~ki~vSGC~~~C~~~~i~DiG~i~~~------~G~~v~vGG~~G~~-------~~~g~~l~~~~~~~~v~~~i~~~l~~  739 (847)
T PRK14989        673 KMKFGVSGCTRECAEAQGKDVGIIATE------KGWNLYVCGNGGMK-------PRHADLLAADLDRETLIKYLDRFMMF  739 (847)
T ss_pred             ceEEEEeCCcccccccccccEEEEEec------CceEEEECCCCCCC-------CcceeeecCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999864      37999999999876       89999886 79999999999999999


Q ss_pred             HHHhCCCCcchhhhHHHHHHHh--hhhHHHHHHHH
Q 008202          361 QRENGRRDDRKYSRMKYLISSW--GIEKFRSVVEQ  393 (574)
Q Consensus       361 ~rd~g~R~~R~~aRlk~li~r~--G~e~fr~~ve~  393 (574)
                      |++++++    ++|+..|++|+  |++.|++.+.+
T Consensus       740 y~~~~~~----~er~~~~~~r~~~g~~~~~~~~~~  770 (847)
T PRK14989        740 YIRTADK----LQRTAVWLENLEGGIDYLKAVIID  770 (847)
T ss_pred             HHHhCcc----cccHHHHHHHhhchHHHHHHHHhc
Confidence            9999884    78999999999  99999988764

>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed

Probab=100.00  E-value=1.6e-37  Score=347.78  Aligned_cols=225  Identities=20%  Similarity=0.268  Sum_probs=196.2

Q ss_pred             HHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202          105 QLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI  184 (574)
Q Consensus       105 ~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L  184 (574)
                      ..+++.|+|.|++.       +.||||+++|+|+||++|++.|++||++||+|.||||+||||||+||+.++++++++.|
T Consensus       359 ~~~~~~Gv~~Qkq~-------G~~~v~v~vp~Grlt~~ql~~LA~iA~~yg~g~irlT~~Qni~l~~V~~~~~~~l~~~L  431 (593)
T PRK09567        359 DRFAHVGVHPQKQP-------GLNWIGVVLPVGRLTTDQMRGLAKIAARYGDGEIRLTVWQNLLISGVPDADVAAVEAAI  431 (593)
T ss_pred             hccccceeeccCCC-------CceEEEEECCCCccCHHHHHHHHHHHHHhCCCEEEEeCCCCeEEcCCCHHHHHHHHHHH
Confidence            45678899999863       58999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCC
Q 008202          185 IRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHG  263 (574)
Q Consensus       185 ~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~  263 (574)
                       .+.|++.... ...+++++|++ ++|+.++.++++++.+|.++|.+.                                
T Consensus       432 -~~~Gl~~~~~-~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~~~--------------------------------  477 (593)
T PRK09567        432 -EALGLTTEAS-SIRAGLVACTGNAGCKFAAADTKGHALAIADYCEPR--------------------------------  477 (593)
T ss_pred             -HHcCCCCCCc-ceeeccEecCCCCCCCccHhhHHHHHHHHHHHHHHh--------------------------------
Confidence             8888665433 34456999997 699999999999999999887421                                


Q ss_pred             CCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec---CCCcceeEEEEEccCCCCcCCcccccccccc
Q 008202          264 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD---ENGEPQGFNLYVGGGMGRTHRLETTFPRLGE  340 (574)
Q Consensus       264 ~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~---~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~  340 (574)
                                   ..||+||||+|||||++|++++++||||++...   ++....||+||+||++|..       |++++
T Consensus       478 -------------~~l~~~ikI~vSGCpn~Ca~~~iaDIGfvG~~~~~~~g~~~~gy~v~lGG~~g~~-------~~lg~  537 (593)
T PRK09567        478 -------------VALDQPVNIHLTGCHHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIVVGGGFGED-------AAIGR  537 (593)
T ss_pred             -------------cCCCCCcEEEEECCCccccccccCCEEEEeeEeccCCCCccceEEEEECCCCCCC-------CCcch
Confidence                         148999999999999999999999999999753   2223579999999999865       78888


Q ss_pred             ccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHH
Q 008202          341 QLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ  393 (574)
Q Consensus       341 ~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~  393 (574)
                      .+. +|+++++++++++++..|+++..+   ..|+|.+|++|+|+++|++.++.
T Consensus       538 ~~~~~vp~eev~~~l~~ll~~y~~~r~~---~~E~f~~f~~R~g~e~l~~~l~~  588 (593)
T PRK09567        538 EVFRDVKAEDAPRLVERLLRAYLAHRQG---PDETFQAFTRRHDPEALRSLAEE  588 (593)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHhcCC---CCCcHHHHHHHcCcHHHHHHHhc
Confidence            875 899999999999999999998541   26899999999999999999875

>PLN02431 ferredoxin--nitrite reductase

Probab=100.00  E-value=2.7e-34  Score=320.11  Aligned_cols=198  Identities=21%  Similarity=0.292  Sum_probs=172.0

Q ss_pred             HHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202          105 QLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI  184 (574)
Q Consensus       105 ~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L  184 (574)
                      ...++.|+|.|++.       ++||||+++|+|+||++||+.|++||++||+|+||||+||||||+||+.+++++++++|
T Consensus       380 ~~~~~~Gv~~Qk~~-------G~~~v~v~vp~Grlt~~qL~~LA~lA~~yG~g~irlT~~Qni~i~~V~~~~v~~l~~~l  452 (587)
T PLN02431        380 ERRDYLGVHPQKQE-------GLSYVGLHVPVGRLQAADMDELARLADEYGSGELRLTVEQNIIIPNVPNSKVEALLAEP  452 (587)
T ss_pred             cccceeEEEeeccC-------CeEEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEcCCCCEEECCCCHHHHHHHHHHH
Confidence            34578999999753       58999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCC
Q 008202          185 IRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHG  263 (574)
Q Consensus       185 ~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~  263 (574)
                       ...++.. .+++.+|||++|++ ++|..++.+|+++|.+|.+.|..                                 
T Consensus       453 -~~~g~~~-~~~~~~r~vvACtG~~~C~~ai~eTk~~A~~L~~~l~~---------------------------------  497 (587)
T PLN02431        453 -LLQRFSP-NPGLLLKGLVACTGNQFCGQAIIETKARALKVTEELER---------------------------------  497 (587)
T ss_pred             -HhcCCCC-CCCCCccceeECCCccccCccHHHHHHHHHHHHHHHHH---------------------------------
Confidence             5566554 35789999999997 69999999999999999887631                                 


Q ss_pred             CCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEe--cCCCc-ceeEEEEEccCCCCcCCcccccccccc
Q 008202          264 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVS--DENGE-PQGFNLYVGGGMGRTHRLETTFPRLGE  340 (574)
Q Consensus       264 ~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~--~~~g~-~~Gf~v~vGGg~G~~~~~~~t~p~la~  340 (574)
                                  ...||+||||+|||||++|+++.++||||++..  +++|+ +.||+||+||++|..       |++|+
T Consensus       498 ------------~~~lp~k~kI~vSGCpn~C~~~~iaDIG~vG~~~~~~~g~~v~gf~V~lGG~~G~~-------~~~g~  558 (587)
T PLN02431        498 ------------LVEVPRPVRMHWTGCPNSCGQVQVADIGFMGCMARDENGKAVEGADIFVGGRVGSD-------SHLAE  558 (587)
T ss_pred             ------------hhcCCCCeEEEEECCcccccccccccEEEEeeeeecCCCccceEEEEEECCcCCCC-------Cccch
Confidence                        135899999999999999999999999999864  22243 469999999999865       78999


Q ss_pred             ccC-CCChhHHHHHHHHHHHHHHH
Q 008202          341 QLG-YVPKEDILYAVKAIVVTQRE  363 (574)
Q Consensus       341 ~l~-~v~~eev~~~~~ai~~~~rd  363 (574)
                      .+. +|+++|+++++++|+..|..
T Consensus       559 ~l~~~Vp~eel~~~v~~il~~~~~  582 (587)
T PLN02431        559 EYKKGVPCDELVPVVADILIEEFG  582 (587)
T ss_pred             hhhcCCCHHHHHHHHHHHHHHHhh
Confidence            886 89999999999997655543

>PLN00178 sulfite reductase

Probab=100.00  E-value=3.9e-34  Score=320.81  Aligned_cols=224  Identities=17%  Similarity=0.271  Sum_probs=191.1

Q ss_pred             hhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHH
Q 008202          107 IKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR  186 (574)
Q Consensus       107 ~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~  186 (574)
                      -.+.|++.|+|        +.|++++++|+|+|+++|++.|++||++||. .+|||++|||+|+||+.++++++.+.| +
T Consensus       393 ~d~~G~~~q~d--------G~~~v~l~vp~Grit~~~l~~La~iAe~yg~-~iRlT~~Qnlil~~I~~~~~~~i~~~L-~  462 (623)
T PLN00178        393 KSYLGWHEQGD--------GKLFYGVHVDNGRIKGEAKKALREVIEKYNL-PVRLTPNQNLILCDIRPAWKEPITAAL-A  462 (623)
T ss_pred             ccceeEEEccC--------CcEEEEEecCCeecCHHHHHHHHHHHHHhCC-cEEEeCCCCEEEcCCCHHHHHHHHHHH-H
Confidence            35779999875        4689999999999999999999999999995 899999999999999999999999999 8


Q ss_pred             HcCCCC-CCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCC
Q 008202          187 SMGSTL-GACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGT  264 (574)
Q Consensus       187 ~~g~t~-~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~  264 (574)
                      +.|+.. ...+...|++|+||+ ++|+.++.+++.++..|.+.+...        ++                       
T Consensus       463 ~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~l~~~--------~~-----------------------  511 (623)
T PLN00178        463 AAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDILKRVRAM--------FN-----------------------  511 (623)
T ss_pred             hCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHH--------Hh-----------------------
Confidence            888543 345778999999998 699999999999998887765310        00                       


Q ss_pred             CCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-
Q 008202          265 NFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-  343 (574)
Q Consensus       265 ~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-  343 (574)
                            +  ++ ..+|+||||+||||||+|++++++||||++..     ..+|+||+||+.+.        +++++.+. 
T Consensus       512 ------~--~~-l~~~~~i~I~vSGCpNgCarp~iaDIGlvG~~-----~~~Y~I~lGG~~~~--------~~la~~~~~  569 (623)
T PLN00178        512 ------K--VG-LKYDESVVVRMTGCPNGCARPYMAELGFVGDG-----PNSYQIWLGGTPNQ--------TRLAEPFMD  569 (623)
T ss_pred             ------h--cC-CCCCCceEEEEeCCCccccccccCcEEEEcCC-----CCeEEEEECCCCCc--------ccccchhhc
Confidence                  0  11 22469999999999999999999999999832     24899999997432        67888886 


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCC
Q 008202          344 YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGK  397 (574)
Q Consensus       344 ~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~  397 (574)
                      .|+++++++++++++..|++++.    .+|||.+|++|+|+++|++.++.++|.
T Consensus       570 ~V~~eei~~~le~ll~~y~~~r~----~~E~f~df~~R~G~e~~~~~~~~~~~~  619 (623)
T PLN00178        570 KVKVDDLEKVLEPLFYMWKQQRQ----EKESFGDFTNRVGFEALKEYIESYAGS  619 (623)
T ss_pred             CcCHHHHHHHHHHHHHHHHHhCc----CCCCHHHHHHHcCcHHHHHHHHHhcCC
Confidence            79999999999999999998765    579999999999999999999998753

>TIGR02042 sir ferredoxin-sulfite reductase

Probab=100.00  E-value=2.3e-34  Score=321.06  Aligned_cols=219  Identities=17%  Similarity=0.272  Sum_probs=183.6

Q ss_pred             hhhceeEeeccCcccCCccceEEEEEEcCCccccHH---HH-HHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHH
Q 008202          107 IKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQ---LY-LTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMR  182 (574)
Q Consensus       107 ~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~---ql-~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~  182 (574)
                      -.+.|+++|.+        +.||+++++|+|+|+++   |+ +.|++||++||. .+|||+||||+|+||+.++++++.+
T Consensus       351 ~d~~G~~~q~d--------G~~~v~l~vp~Grl~~~~~~~l~~~LaeIA~~yg~-~irlT~~Qnl~l~~V~~~~~~~i~~  421 (577)
T TIGR02042       351 KDYLGWHEQGD--------GKWFLGLHIDSGRVKDDGNWQLKKALREIVEKYNL-PVRLTPNQNIILYDIQPEWKRAITT  421 (577)
T ss_pred             cccceEEECCC--------ceEEEEEEecCceecCCchHHHHHHHHHHHHHhCC-CEEEcCCCCeEECCCCHHHHHHHHH
Confidence            35779998864        48999999999999995   44 799999999996 7999999999999999999999999


Q ss_pred             HHHHHcCC-CCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCC
Q 008202          183 SIIRSMGS-TLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDN  260 (574)
Q Consensus       183 ~L~~~~g~-t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~  260 (574)
                      .| ++.|+ +.+++++..||+++||+ ++|+.++.+++..+..+.+.+..                              
T Consensus       422 ~L-~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~l~~------------------------------  470 (577)
T TIGR02042       422 VL-AQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRA------------------------------  470 (577)
T ss_pred             HH-HhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHHHHH------------------------------
Confidence            99 88884 44568899999999997 69999999998644433332210                              


Q ss_pred             CCCCCCCCCCCCcccCCCC-CCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccc
Q 008202          261 SHGTNFPDSPEPIYGTQFL-PRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLG  339 (574)
Q Consensus       261 ~~~~~~~~~~e~~yg~~~L-PrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la  339 (574)
                                  ++....| |+||||+|||||++|++++++||||++...     .||+||+||+.+.        ++++
T Consensus       471 ------------l~~~~~l~~~~i~I~vSGCpn~Ca~p~iaDIG~vG~~~-----~~y~l~lGG~~~~--------~rla  525 (577)
T TIGR02042       471 ------------LLEKVGLPDEHFVVRMTGCPNGCARPYMAELGFVGSAP-----NSYQVWLGGSPNQ--------TRLA  525 (577)
T ss_pred             ------------HHHhcCCCCCCcEEEEECCCccccCCCcCcEEEECCCC-----CcEEEEECCCCCc--------ccch
Confidence                        0001235 599999999999999999999999997532     4799999998752        5788


Q ss_pred             cccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHH
Q 008202          340 EQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQY  394 (574)
Q Consensus       340 ~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~  394 (574)
                      +.+. +|+++++++++++++..|++++.    ++|||.+|++|+|+++|++.+++|
T Consensus       526 ~~~~~~vp~~ei~~vl~~ll~~y~~~r~----~~E~f~~fi~R~G~e~~~~~l~~~  577 (577)
T TIGR02042       526 RPFIDKLKDGDLEKVLEPLFVHFKQSRQ----SGESFGDFCDRVGFDALREFVESY  577 (577)
T ss_pred             hHHhcCcCHHHHHHHHHHHHHHHHHhcc----CCCCHHHHHHHcCcHHHHHHHhcC
Confidence            8886 89999999999999999998754    579999999999999999999864

monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.

>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed

Probab=100.00  E-value=6.6e-33  Score=306.84  Aligned_cols=196  Identities=21%  Similarity=0.315  Sum_probs=171.0

Q ss_pred             hhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHH
Q 008202          108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRS  187 (574)
Q Consensus       108 k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~  187 (574)
                      .|+|+|.|++.       ++|||++++|+|++|++|++.|+++|++||+|+||||+||||+|+||+.++++++++++ ..
T Consensus       309 ~~~Gv~~qk~~-------G~~~v~v~vp~G~lt~~~l~~la~ia~~yg~g~irlT~~Qni~l~~i~~~~v~~l~~~~-~~  380 (513)
T PRK09566        309 DHIGVHPQKQA-------GLNYVGLHVPVGRLYAEDMFELARLAEVYGSGEIRLTVEQNVIIPNIPDENLETFLAEP-LL  380 (513)
T ss_pred             cccceeecCcC-------CeEEEEEEcCCccCCHHHHHHHHHHHHHhCCCeEEEcCCCCEEEeCCCHHHHHHHHHHH-hh
Confidence            47899999763       58999999999999999999999999999999999999999999999999999999997 44


Q ss_pred             cCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCC
Q 008202          188 MGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF  266 (574)
Q Consensus       188 ~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~  266 (574)
                      .++.+. +++..||+++||+ ++|..++.+|++++.+|.+.|..                                    
T Consensus       381 ~~~~~~-~~~~~~~~vaC~G~~~C~~a~~dT~~~a~~l~~~l~~------------------------------------  423 (513)
T PRK09566        381 QKFSLE-PGPLARGLVSCTGNQYCNFALIETKNRALALAKELDA------------------------------------  423 (513)
T ss_pred             ccCCCC-CCccccCceeCcCcccccccHhhHHHHHHHHHHHHHH------------------------------------
Confidence            455443 4789999999998 59999999999999999887631                                    


Q ss_pred             CCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec-CCC-cceeEEEEEccCCCCcCCccccccccccccC-
Q 008202          267 PDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD-ENG-EPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-  343 (574)
Q Consensus       267 ~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~-~~g-~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-  343 (574)
                               ...||+||||+|||||++|+++.++||||++... .+| ...||+||+||++|..       |++++.+. 
T Consensus       424 ---------~~~lp~~~kI~iSGCpn~C~~~~iaDIG~~G~~~~~dg~~~~g~~i~lGG~~g~~-------~~~g~~~~~  487 (513)
T PRK09566        424 ---------ELDLPQPVRIHWTGCPNSCGQPQVADIGLMGTKARKNGKTVEGVDIYMGGKVGKD-------AKLGECVQK  487 (513)
T ss_pred             ---------hcCCCCceEEEEECChhhhhchhhCCEEEEEEEeecCCcccceEEEEeCCccCcc-------ccccchhhc
Confidence                     1358999999999999999999999999999863 123 2469999999998864       78999986 


Q ss_pred             CCChhHHHHHHHHHHHHHHHh
Q 008202          344 YVPKEDILYAVKAIVVTQREN  364 (574)
Q Consensus       344 ~v~~eev~~~~~ai~~~~rd~  364 (574)
                      +|+++++++++++|+..|.+.
T Consensus       488 ~v~~~ev~~~i~~l~~~~~~~  508 (513)
T PRK09566        488 GIPCEDLKPVLKDLLIEQFGA  508 (513)
T ss_pred             CcCHHHHHHHHHHHHHHHhhh
Confidence            799999999999988877654

>PRK13504 sulfite reductase subunit beta; Provisional

Probab=100.00  E-value=6.2e-33  Score=310.42  Aligned_cols=214  Identities=19%  Similarity=0.242  Sum_probs=184.8

Q ss_pred             hhceeEeeccCcccCCccceEEEEEEcCCccccHH----HHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHH
Q 008202          108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQ----LYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRS  183 (574)
Q Consensus       108 k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~----ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~  183 (574)
                      .+.|+++|++        +.|+|++++|+|+||++    |++.|++||++|| +.||||++|||+|+||+.++++++.+.
T Consensus       342 ~~~G~~~q~~--------G~~~v~v~vp~Grl~~~~~~~~l~~La~iA~~yg-~~irlT~~Qnl~l~~i~~~~~~~l~~~  412 (569)
T PRK13504        342 DRLGWVEGID--------GKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHK-GDFRLTANQNLIIANVPPSDKAKIEAL  412 (569)
T ss_pred             ceeEEEecCC--------CcEEEEEEecCEEecCCCcHHHHHHHHHHHHHhC-CEEEEeCCCCEEEcCCCHHHHHHHHHH
Confidence            5789998863        48999999999999999    9999999999999 899999999999999999999999999


Q ss_pred             HHHHcCCCCCC-CCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCC
Q 008202          184 IIRSMGSTLGA-CGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNS  261 (574)
Q Consensus       184 L~~~~g~t~~a-~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~  261 (574)
                      | ++.|+.... +++.+|++++||+ ++|+.++.+++.++..|.+.|...                              
T Consensus       413 L-~~~gl~~~~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~------------------------------  461 (569)
T PRK13504        413 L-REYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEAL------------------------------  461 (569)
T ss_pred             H-HhCCCCCCCCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHH------------------------------
Confidence            9 888865444 3788999999998 699999999999888887766310                              


Q ss_pred             CCCCCCCCCCCcccCCCC-CCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCcccccccccc
Q 008202          262 HGTNFPDSPEPIYGTQFL-PRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGE  340 (574)
Q Consensus       262 ~~~~~~~~~e~~yg~~~L-PrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~  340 (574)
                                  +....| |.||+|+||||||+|++++++||||++...     .+|+||+||+.+.        +++++
T Consensus       462 ------------~~~~~l~~~~i~I~vSGCpn~Ca~~~iaDIG~vG~~~-----~~y~i~lGG~~~~--------~~~~~  516 (569)
T PRK13504        462 ------------LAKHGLSDEHIVIRMTGCPNGCARPYLAEIGLVGKAP-----GRYNLYLGGSFNG--------TRLPK  516 (569)
T ss_pred             ------------HhhcCCCCCceEEEEeCCcccccccccCcEEEEecCC-----CeEEEEECCCCCC--------Cccch
Confidence                        112347 899999999999999999999999998643     4799999998752        57888


Q ss_pred             ccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHH
Q 008202          341 QLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE  392 (574)
Q Consensus       341 ~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve  392 (574)
                      .+. .|+.++++++++++++.|++++.    ..|||.+|++|+|+  +++.++
T Consensus       517 ~~~~~v~~~~v~~~l~~ll~~y~~~~~----~~E~f~~~~~R~g~--~~~~~~  563 (569)
T PRK13504        517 MYRENITEEEILATLDPLLGRWAKERE----PGEGFGDFVIRAGI--IREVLD  563 (569)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHHcch--HHhhhc
Confidence            886 79999999999999999999865    57999999999999  555443

>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively

Probab=99.97  E-value=2.6e-31  Score=250.40  Aligned_cols=153  Identities=41%  Similarity=0.688  Sum_probs=128.4

Q ss_pred             CCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCc
Q 008202          195 CGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPI  273 (574)
Q Consensus       195 ~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~  273 (574)
                      .||.+|||++||+ .+|+.++.|+.+++.+|.++|...                                          
T Consensus         1 ~g~~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~------------------------------------------   38 (157)
T PF01077_consen    1 SGDTVRNVTACPGSGFCPLALIDTKPLARELEDYLEER------------------------------------------   38 (157)
T ss_dssp             -SSSBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHHH------------------------------------------
T ss_pred             CCCCCcccccCCChhhCchHHhCHHHHhhHhhhccccc------------------------------------------
Confidence            4789999999998 499999999999999999776421                                          


Q ss_pred             ccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC---CCChhHH
Q 008202          274 YGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG---YVPKEDI  350 (574)
Q Consensus       274 yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~---~v~~eev  350 (574)
                      |....||+||||+|||||++|+.+.++||||+++..+.+. .||+|||||++|++       |+++..+.   +++.|++
T Consensus        39 ~~~~~lp~k~kI~isGCpn~C~~~~i~DIG~~g~~~~~~~-~g~~v~vGG~~g~~-------~~~~~~~~~~~~~~~ee~  110 (157)
T PF01077_consen   39 FEDPNLPRKFKIAISGCPNSCARPQINDIGFIGVKKPNGE-EGFDVYVGGGLGRH-------PRLGRELALAGFVPEEEV  110 (157)
T ss_dssp             HHCSCSSS-BEEEEESSTTSTTSGGGSSEEEEEEEESTCE-EEEEEEES-BESTS-------TBEBEEEEEEEEEEGGGH
T ss_pred             ccccccccccccceeecccccccccccccccceeeecccc-ceeeeeecccccCC-------CCccceeeccccccHHHH
Confidence            1235799999999999999999999999999999875332 39999999999987       67776664   6899999


Q ss_pred             HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCC
Q 008202          351 LYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKF  399 (574)
Q Consensus       351 ~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~  399 (574)
                      ++++++++++|+  |++.+++++||+++|+|+|+|+|+++|+++++++|
T Consensus       111 ~~~i~~il~~y~--~~~~~~~~er~~~~i~r~G~e~~~~~v~~~~~~~~  157 (157)
T PF01077_consen  111 LEVIEAILEYYR--GNREARKKERFKDFIERLGFEKFREEVEERLGHKF  157 (157)
T ss_dssp             HHHHHHHHHHHH--S-HSSGTT-SHHHHHHHHHHHHHHHHHHHTSCGG-
T ss_pred             HHHHHHHHHHHH--HhccCCCCCCHHHHHHHHCHHHHHHHHHHHhCcCC
Confidence            999999999999  77788899999999999999999999999998764

The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....

>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component

Probab=99.97  E-value=7.7e-30  Score=283.81  Aligned_cols=210  Identities=17%  Similarity=0.198  Sum_probs=178.2

Q ss_pred             hhceeEeeccCcccCCccceEEEEEEcCCccccH----HHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHH
Q 008202          108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSN----QLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRS  183 (574)
Q Consensus       108 k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~----~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~  183 (574)
                      .+.|+++|.+        +.|++++++|.|+|++    +|+..|+++|+ ||++.||+|++|||.|.||+.++++++.+.
T Consensus       326 ~~~g~~~~~~--------G~~~v~v~~p~G~l~~~~~~~~l~~la~iA~-~~~~~irlT~~Qnl~l~~v~~~~~~~l~~~  396 (541)
T TIGR02041       326 DRYGWVKGID--------GNWHLTLFIESGRIADYPDKPLMTGLREIAK-IHKGDFRITPNQNLIIANVPEGGKAKIEAL  396 (541)
T ss_pred             cccCeecCCC--------CcEEEEEEecCceeecCccHHHHHHHHHHHH-hcCCeEEEeCCCCEEEcCCCHHHHHHHHHH
Confidence            3567776642        5899999999999995    59999999997 567999999999999999999999998888


Q ss_pred             HHHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCC
Q 008202          184 IIRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSH  262 (574)
Q Consensus       184 L~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~  262 (574)
                      | ++.|+..++.++..|||++||+ ++|..++.+|+.++.+|.+.|...                               
T Consensus       397 l-~~~gl~~~~~~~~~~~vvAC~G~~~C~~a~~dT~~~a~~l~~~l~~~-------------------------------  444 (541)
T TIGR02041       397 A-RQYGLIDGKVTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNI-------------------------------  444 (541)
T ss_pred             H-HHcCCCCCCCCceeeccEECCCccchhhhHHHHHHHHHHHHHHHHHH-------------------------------
Confidence            8 8999877677888999999998 699999999999999888766310                               


Q ss_pred             CCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCcccccccccccc
Q 008202          263 GTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL  342 (574)
Q Consensus       263 ~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l  342 (574)
                         +   ++  |+  ..|.++||+||||||+|++++++||||++...     .+|+|++||..+.        +++++.+
T Consensus       445 ---~---~~--~~--~~~~~~~I~iSGCpn~Ca~~~~adIG~~G~~~-----~~y~l~lGG~~~~--------~~~g~~~  501 (541)
T TIGR02041       445 ---M---EK--HG--LADEEIVLRMTGCPNGCGRPYLAEIGLVGKAP-----GRYNLMLGGNRRG--------QRLPRLY  501 (541)
T ss_pred             ---H---Hh--cC--CCCCceEEEEecCCccccccccCcEEEEEecc-----ceEEEEECCCCCC--------CchhHHH
Confidence               0   00  11  24789999999999999999999999998643     3699999997531        6889888


Q ss_pred             C-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhh
Q 008202          343 G-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE  385 (574)
Q Consensus       343 ~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e  385 (574)
                      . .|+.++++++++.+++.|++++.    .+|||.++++|+|++
T Consensus       502 ~~~v~~~~v~~~v~~ll~~y~~~~~----~~E~f~~~~~R~g~~  541 (541)
T TIGR02041       502 RENITEPEILAELDELLGRYAAERK----PGEGFGDFLIRTGII  541 (541)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHhcCCC
Confidence            6 69999999999999999999865    479999999999974

In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.95  E-value=3.8e-27  Score=273.77  Aligned_cols=192  Identities=19%  Similarity=0.267  Sum_probs=157.7

Q ss_pred             hhHHHHHHHhhhhHHHHHHHHHhCCCC--CCCC--------------CCC-----cccccccCCeeeecCCcEEEEEEeC
Q 008202          373 SRMKYLISSWGIEKFRSVVEQYYGKKF--EPFR--------------QLP-----EWEFKSHLGWHEQGDGGLFCGLHVD  431 (574)
Q Consensus       373 aRlk~li~r~G~e~fr~~ve~~~g~~~--~~~~--------------~~~-----~~~~~~~~G~~~q~dG~~~v~v~vp  431 (574)
                      +-+..+|...++..|.+.+.+. |+..  +..+              .+.     .....|++.-+.|+||+|++++++|
T Consensus       494 ~~~~~~~~~~~~~~~~~~~~~~-~~~~gc~~c~p~~~~~l~~~~~~~~~~~~~~~~~~~n~~~~~n~Qk~g~~~v~~~~p  572 (847)
T PRK14989        494 QELFHLIRVEGIKTFEELLAKH-GKGYGCEVCKPTVGSLLASCWNEYILKPQHTPLQDTNDNFLANIQKDGTYSVIPRSA  572 (847)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHh-CCCCCCchhhHHHHHHHHhcCccccCChhhccccccccccccccccCCeEEEEEEcC
Confidence            4466677777888887777654 3320  0000              000     0123567777889999999999999


Q ss_pred             CCCcCHHHHHHHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchh
Q 008202          432 NGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAIT  511 (574)
Q Consensus       432 ~Grl~~~~l~~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~  511 (574)
                      +|+++++||+.|+++|++||..+|+|++|||+|++|+.++++++++.|.+.||.+...+++.+|++++|+|+++|++++.
T Consensus       573 ~G~lt~~ql~~ia~iA~kyg~~~~iT~~Q~i~L~~i~~~~l~~v~~~L~~~Gl~~~~~~g~~vr~v~aC~G~~~C~~g~~  652 (847)
T PRK14989        573 GGEITPEGLMAVGRIAREFNLYTKITGSQRIGLFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVG  652 (847)
T ss_pred             CcEeCHHHHHHHHHHHHHHCCcEEEcCCCceEeCCCCHHHHHHHHHHHHHCCCCcCCCCCCCcCceeeCCCCCccccccc
Confidence            99999999999999999999889999999999999999999999999999999987766777899999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202          512 EAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       512 et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      ||+.++.    +|++.+.  +++.|+|+||+||||||+|++|+++||||+|+.. +|+||+
T Consensus       653 dt~~la~----~l~~~~~--~~~~P~k~ki~vSGC~~~C~~~~i~DiG~i~~~~-G~~v~v  706 (847)
T PRK14989        653 DSVGLGV----ELENRYK--GIRTPHKMKFGVSGCTRECAEAQGKDVGIIATEK-GWNLYV  706 (847)
T ss_pred             cHHHHHH----HHHHHhc--cCCCCCceEEEEeCCcccccccccccEEEEEecC-ceEEEE
Confidence            9988764    4555543  3445689999999999999999999999999865 499997

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.94  E-value=1.8e-26  Score=267.58  Aligned_cols=191  Identities=20%  Similarity=0.257  Sum_probs=157.0

Q ss_pred             hhhHHHHHHHhhhhHHHHHHHHHhCCCCC-C---CCCC---------Cc--------ccccccCCeeeecCCcEEEEEEe
Q 008202          372 YSRMKYLISSWGIEKFRSVVEQYYGKKFE-P---FRQL---------PE--------WEFKSHLGWHEQGDGGLFCGLHV  430 (574)
Q Consensus       372 ~aRlk~li~r~G~e~fr~~ve~~~g~~~~-~---~~~~---------~~--------~~~~~~~G~~~q~dG~~~v~v~v  430 (574)
                      ++-+...|...++..|.+.+++ +|+... .   .+|.         +.        .-..++++++.|+||+|++++++
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qk~g~~~v~~~~  560 (785)
T TIGR02374       482 RDELFEEIQARGFTTFAEVMNQ-LGWKTKNGCSTCKPAVQYYLAMLYPGFILDEEATSLSNDHFLANIQKDGTYSVIPRM  560 (785)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHH-hCCCCCCCCcccHHhHHHHHHhcCCcccccchhccccccceeeccccCCceEEEEec
Confidence            4567788888888888877765 344321 1   1110         00        01346889999999999999999


Q ss_pred             CCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccc
Q 008202          431 DNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLA  509 (574)
Q Consensus       431 p~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~a  509 (574)
                      |+|+++++||+.|+++|++||. .+|+|++|||+|++|++++++++++.|.+.|+.  .+++...|++++|+|.++|+++
T Consensus       561 ~~G~lt~~ql~~la~ia~~yg~~~i~iT~~Q~i~l~gi~~~~l~~i~~~L~~~gl~--~~~g~~~r~v~aC~G~~~C~~g  638 (785)
T TIGR02374       561 YGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYE--HAYGKALRTVKTCVGSQWCRYG  638 (785)
T ss_pred             CCcccCHHHHHHHHHHHHHhCCCeEEEcCCceEEECCCCHHHHHHHHHHHHhCCCC--CCCCCCccCcccCCCccccCcc
Confidence            9999999999999999999998 799999999999999999999999999999996  3456777999999999999999


Q ss_pred             hhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202          510 ITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       510 l~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      +.||+.++.    +|++.+....  .|+|+||+||||||+|++|+++||||+|+.. +|+||+
T Consensus       639 ~~ds~~la~----~l~~~~~~~~--~p~k~ki~vSGC~~~C~~~~~~DiG~i~~~~-g~~v~v  694 (785)
T TIGR02374       639 NQDSVQLAI----QLERRYEGLR--TPHKIKIGVSGCERECAEAAGKDVGVIATEK-GWNLYV  694 (785)
T ss_pred             hhhHHHHHH----HHHHHhcccC--CCCceEEEEECCccccchhhhCcEEEEEecC-CeEEEE
Confidence            999988765    4444454433  4579999999999999999999999999865 599997

>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]

Probab=99.94  E-value=2e-26  Score=233.55  Aligned_cols=147  Identities=24%  Similarity=0.412  Sum_probs=134.8

Q ss_pred             ccCCeeeecCCcEEEEEEeCC-CCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCC
Q 008202          412 SHLGWHEQGDGGLFCGLHVDN-GRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRY  489 (574)
Q Consensus       412 ~~~G~~~q~dG~~~v~v~vp~-Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~  489 (574)
                      ++.|+.++.++.|++++.+|. |.+++++|+.|+++|++||. .|++|.+|++.|++|++++++++.++|++.||..++ 
T Consensus        18 ~~~Gvi~r~~~t~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L~~iG~~~G~-   96 (317)
T COG2221          18 VGYGVIKRRDGTYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIGLPVGS-   96 (317)
T ss_pred             cCCceeeeccCcEEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHHHHcCCCCCC-
Confidence            788999999999999999986 99999999999999999998 799999999999999999999999999999999976 


Q ss_pred             CCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecC
Q 008202          490 VDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP  565 (574)
Q Consensus       490 ~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~  565 (574)
                      .++.+|+++||+|...|..|+.||..++    .+|++.|.+..+  |.+|||.+|||||+|++|+..||||+|.-.
T Consensus        97 ~G~~vr~i~aC~G~~~C~~a~~Dt~~la----~~l~e~f~~~~~--P~KfKI~vsGCPn~C~r~~~~DigivGv~~  166 (317)
T COG2221          97 TGPAVRAIVACPGPRTCETALYDTTELA----RRLEEEFLEVPV--PYKFKIAVSGCPNDCTRPQAHDIGIVGVWK  166 (317)
T ss_pred             cchhhhhhhcCcCcccccccccChHHHH----HHHHHHhhcCCC--CceEEEEeecCCcccccccccceeEEEeec
Confidence            5778899999999999999999998865    577777765444  579999999999999999999999999743

>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit

Probab=99.94  E-value=1.1e-26  Score=243.90  Aligned_cols=141  Identities=17%  Similarity=0.236  Sum_probs=129.3

Q ss_pred             cCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccc
Q 008202          420 GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAM  498 (574)
Q Consensus       420 ~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~  498 (574)
                      +++.|++++.+|+ +++++||+.|+++|++||. .+|||++|||+|++|+.+++++|.++|.++||.+....+..+|+++
T Consensus        27 ~~~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~~edl~~i~~~L~~~Gl~~~~~G~~vrrni~  105 (341)
T TIGR02066        27 GDVIYTVKAGTPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKIQPLIDELEEVGFPVGGTGDAVKGNIV  105 (341)
T ss_pred             CCcEEEEEeCCCc-ccCHHHHHHHHHHHHHhCCCeEEEeccCCEEEecCCHHHHHHHHHHHHhccCCCCCCCCccccccc
Confidence            4689999999999 9999999999999999997 6999999999999999999999999999999998654444544999


Q ss_pred             cCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEee
Q 008202          499 ACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD  563 (574)
Q Consensus       499 AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~  563 (574)
                      ||+|.++|++++.||++++..|.++|.+.+...++|  .||||+||||||+|++|+++||||+|.
T Consensus       106 aC~G~~~C~~a~~dt~~l~~~l~~~l~~~~~~~~lP--~KfKI~vSGC~~~C~~~~~~Dig~~g~  168 (341)
T TIGR02066       106 HTQGWLHCHIPAIDASGIVKAVMDELYEYFTDHKLP--AMVRISLSCCANMCGGVHASDIAIVGI  168 (341)
T ss_pred             cCcCCCCCCcchhchHHHHHHHHHHHHHHHhccccc--ccceeccccccccccchhhcccccccc
Confidence            999999999999999999998999998888766654  799999999999999999999999995

This model describes the beta subunit of sulfite reductase.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.92  E-value=3.1e-25  Score=244.34  Aligned_cols=203  Identities=24%  Similarity=0.335  Sum_probs=183.1

Q ss_pred             ccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCccee
Q 008202          124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVL  203 (574)
Q Consensus       124 ~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~  203 (574)
                      ++++|.++.|+|||.+++++|++|+++|++||..++.+|.-|.|-|.|+++++|+++|..|...   +..+-|-..|.|.
T Consensus       549 kdgTysvvPrm~GG~~~~~~L~~Iadva~ky~l~~vK~Tg~Qri~l~G~k~edLp~~w~~l~~~---sg~ay~k~lrtvK  625 (793)
T COG1251         549 KDGTYSVVPRMPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMA---SGHAYGKALRTVK  625 (793)
T ss_pred             cCCeEEEeccccCcccCHHHHHHHHHHHHHhCcceeeccCCceeeecCCCcccchhHHHhcccc---chhHHHHhhhhHh
Confidence            4579999999999999999999999999999999999999999999999999999999999444   3345667799999


Q ss_pred             cCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCc
Q 008202          204 APPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRK  282 (574)
Q Consensus       204 acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrK  282 (574)
                      .||+. +|.....|+..+...|.+.+.                                              ...+|.|
T Consensus       626 ~Cvg~~~Cr~g~qds~~Lgi~le~~~~----------------------------------------------gl~~P~k  659 (793)
T COG1251         626 TCVGSTFCRFGTQDSVGLGIRLEKRYE----------------------------------------------GLRTPHK  659 (793)
T ss_pred             hCCCcchhhhCccchhhHhHHHHHHhc----------------------------------------------cCCCCcc
Confidence            99986 999999999999999876542                                              2579999


Q ss_pred             eEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHH
Q 008202          283 FKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQ  361 (574)
Q Consensus       283 fkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~  361 (574)
                      +|+++||||++|+.+.+.|+|++++.      .||++|+||.-|.+       |+.++.+. ..++|++++++.+++.+|
T Consensus       660 ~k~~vSgCpr~CaEa~~KDvGii~t~------~G~~l~vgG~~g~~-------~r~a~~~~~~~~e~e~l~~i~~~~~~y  726 (793)
T COG1251         660 VKMAVSGCPRNCAEAGIKDVGIIGTE------KGWNLYVGGNGGMK-------PRHADLLAKVLTEEEVLEYIDAFLQYY  726 (793)
T ss_pred             eeEeeccCCcccccccCcceEEEecc------cCceEEeccccCcc-------hhhhhhhhhcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999765      48999999988765       89999987 479999999999999999


Q ss_pred             HHhCCCCcchhhhHHHHHHHhhhhHHHHHHH
Q 008202          362 RENGRRDDRKYSRMKYLISSWGIEKFRSVVE  392 (574)
Q Consensus       362 rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve  392 (574)
                      |+.++    +.+|+..||+++|++.|++++.
T Consensus       727 r~~~~----~leR~~~wi~~~Gl~~~k~~v~  753 (793)
T COG1251         727 RETAD----YLERTAPWLDRLGLEHIKEVVL  753 (793)
T ss_pred             HHHHH----HHHHHHHHhhhcchHHHHHHhh
Confidence            99887    5799999999999999999765

>TIGR02435 CobG precorrin-3B synthase

Probab=99.92  E-value=9.7e-25  Score=234.34  Aligned_cols=149  Identities=16%  Similarity=0.170  Sum_probs=131.1

Q ss_pred             cCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccc
Q 008202          420 GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAM  498 (574)
Q Consensus       420 ~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~  498 (574)
                      .|| |++|+++|+|+|+++|++.|+++|++||. .||+|++|||+|++|+.+ ++++.+.|.+.||.+..+.+..+||++
T Consensus        15 ~dg-~mvRvr~p~G~lt~~ql~~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l~~~GL~~~~~~g~~~Rnv~   92 (390)
T TIGR02435        15 GDG-LLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQALLAAGLGAAGAAADDIRNIE   92 (390)
T ss_pred             CCe-eEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHHHHCCCCCccccCCcccccc
Confidence            455 79999999999999999999999999998 699999999999999999 999999999999988666677889999


Q ss_pred             cCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCc---eEEEE
Q 008202          499 ACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNS---YQVFQ  572 (574)
Q Consensus       499 AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~---Y~l~l  572 (574)
                      +||+...|+.++.||+.++.+|.+.+........|  |.||||+||||+|+|++++++||||++...+.   |+|++
T Consensus        93 ~cp~~g~~~~~~~dt~~la~~l~~~l~~~~~~~~L--PrKfki~vsgc~~~c~~~~~~DIG~~~~~~~~~~gf~v~v  167 (390)
T TIGR02435        93 VSPLAGIDPGEIADTRPLAAELRAALENERALLEL--PPKFSVAIDGGGRLVLLGDTADVRLQALTTGAGVAWVVSL  167 (390)
T ss_pred             cCccccCCCccccchHHHHHHHHHHHhcChhhhcC--CCceEEEEECCCccccCCCCCCEEEEEEecCCEEEEEEEE
Confidence            99998889999999999987777766543222234  57999999999999999999999999986655   88886

An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.

>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.7e-23  Score=228.66  Aligned_cols=207  Identities=22%  Similarity=0.311  Sum_probs=178.8

Q ss_pred             HhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHH
Q 008202          106 LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSII  185 (574)
Q Consensus       106 ~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~  185 (574)
                      ...+.|++.|++        +.+++.+-+|.|+|+++.+..+++.++++|.|.+|||..|||.|.+|+.+++..+.+.+ 
T Consensus       293 ~~d~~Gw~~~~~--------g~~~~g~~v~~Grl~~~~~~~l~~~~~~~~~~eiRlT~~QnLii~~v~~~~~~~i~~~l-  363 (510)
T COG0155         293 NGDHIGWVPQKD--------GLWHLGLAVPNGRLKAEGLIPLATEAEEIGFGEIRLTPNQNLIIPNVPEAELEAILRIL-  363 (510)
T ss_pred             CCCceeEEEcCC--------CcEEEEEecceeeecCccchHHHHHHHHHhhccEEeccCcceEecCCCHHHHHHHHHHH-
Confidence            457899999984        48999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCC
Q 008202          186 RSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGT  264 (574)
Q Consensus       186 ~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~  264 (574)
                      .+.|+.. +..+..+|+++||+ |+|..+.++++..+..|.+.|.+.                                 
T Consensus       364 ~~~Gl~t-~~~~l~~~~~AC~G~p~C~lA~aet~~~a~~i~~~l~~~---------------------------------  409 (510)
T COG0155         364 AALGLVT-APSSLRRNSIACVGLPTCALALAETERDAPRIIARLEDL---------------------------------  409 (510)
T ss_pred             HHcCCCC-CCcchhhhcccCCCCCchhhhHhhHHHHHHHHHHHHHhh---------------------------------
Confidence            8888554 56788999999997 799999999999999999887531                                 


Q ss_pred             CCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-
Q 008202          265 NFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-  343 (574)
Q Consensus       265 ~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-  343 (574)
                               .....+  -|+|+||||||.|+++++.+|||++...     .+|+|++||+...        +++++.++ 
T Consensus       410 ---------~~~~~~--~i~i~isGCpn~Ca~~~~a~Igl~G~~~-----~~y~v~lGG~~~~--------~~~~~~~~~  465 (510)
T COG0155         410 ---------LDKHGL--PITLHISGCPNGCGRPHLAEIGLVGKAK-----GGYQVYLGGGADG--------TRGGKLYGE  465 (510)
T ss_pred             ---------hcccCC--ceeEEeccCcchhcCcccCceeEeeccC-----cceEEEecCCCCC--------CccceeecC
Confidence                     001234  7899999999999999999999999775     2599999993321        46677765 


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhh
Q 008202          344 YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWG  383 (574)
Q Consensus       344 ~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G  383 (574)
                      .++.+++.++++.++..|.+...    ..|+|.+++.|.|
T Consensus       466 ~~~~~~i~~~~~~l~~~~~~~R~----~gE~f~d~~~R~g  501 (510)
T COG0155         466 NVPAEEILDAIDRLIGRYAKERH----EGESFGDFVIRAG  501 (510)
T ss_pred             CCCHHHHHHHHHHHHHHHHhccC----CCccHHHHHHHhC
Confidence            69999999999999999998654    3599999999988

>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit

Probab=99.90  E-value=5e-24  Score=227.39  Aligned_cols=140  Identities=14%  Similarity=0.251  Sum_probs=126.7

Q ss_pred             CCcEEEEEEeCCCC-cCHHHHHHHHHHHHHhCC-eEEEc-cCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCcccc
Q 008202          421 DGGLFCGLHVDNGR-IAGKMKKTLREIIEKYNL-NVRIT-PNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITA  497 (574)
Q Consensus       421 dG~~~v~v~vp~Gr-l~~~~l~~La~la~~yg~-~irlT-~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~  497 (574)
                      .+.|++++.+|.|+ ++++||+.|++|+++||. .+++| .+|||+|.+|++++++++.++|.+.|+..+. .++.+|++
T Consensus        79 ~~~~tvRv~~P~G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~gv~~e~le~i~~eL~~~G~dlgg-sG~~vRti  157 (402)
T TIGR02064        79 AEFHTVRVAQPSGKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLGTQTPQLQEIFEELTNLGTDLGG-SGSNLRTP  157 (402)
T ss_pred             CeEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcCCCHHHHHHHHHHHhhcccCCCC-CCCCccce
Confidence            36789999999999 599999999999999997 58998 4899999999999999999999999998765 45667899


Q ss_pred             ccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCC-cccEEEEee
Q 008202          498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPY-MAELGLVGD  563 (574)
Q Consensus       498 ~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~-~aDIGlvG~  563 (574)
                      ++|+|..+|++++.||+.++.+|.+++.+.++...+|  .|+||+||||||+|++++ ++||||+|+
T Consensus       158 ~aC~G~~~C~~a~~DT~~l~~~L~~~~~~~~~~~~lP--~KfKI~vSGCpn~C~~~~~~~DIG~iG~  222 (402)
T TIGR02064       158 ESCVGPARCEFACYDTLKACYELTMEYQDELHRPAFP--YKFKFKFSGCPNDCVAAIARSDFAVIGT  222 (402)
T ss_pred             ecCCCcccCCCcccccHHHHHHHHHHHHhhhhhccCC--ccccccccccccccccceeccCceeecc
Confidence            9999999999999999999998888887777665554  789999999999999999 999999996

This model describes the alpha subunit of sulfite reductase.

>TIGR02912 sulfite_red_C sulfite reductase, subunit C

Probab=99.89  E-value=4.1e-23  Score=215.77  Aligned_cols=147  Identities=26%  Similarity=0.365  Sum_probs=121.8

Q ss_pred             CCeeeec-CCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHC--CCC--CC
Q 008202          414 LGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA--GLL--LP  487 (574)
Q Consensus       414 ~G~~~q~-dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~--Gl~--~~  487 (574)
                      -|+..|+ +|.|++++++|+|+++++||+.|+++|++||. .+|+|++|||+|++|+.++++++.+.|++.  |+.  ..
T Consensus        10 ~~~~~~~~~g~~~vrv~~p~G~lt~~qlr~la~ia~~yg~g~~~~TtrQ~i~l~~i~~~~~~~v~~~L~~~~~gl~~~~~   89 (314)
T TIGR02912        10 NAFRVTKVRGKTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNKALQPIIEGLEINQE   89 (314)
T ss_pred             CCeEEeecCCceEEEEEccceecCHHHHHHHHHHHHHhCCCeEEEecccceEecCcCHHHHHHHHHHHHHHhhccccccc
Confidence            3788887 49999999999999999999999999999997 799999999999999999999999999863  322  11


Q ss_pred             ----CCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEee
Q 008202          488 ----RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD  563 (574)
Q Consensus       488 ----~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~  563 (574)
                          ...++.+|++++|+|...|++++.||+.++..|.    +.+.    +.+.+++|+||||||+|++++++||||+|.
T Consensus        90 ~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~----~~~~----~~~~k~ki~iSGCp~~C~~~~~~DiG~~g~  161 (314)
T TIGR02912        90 DVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIE----KAVF----PNDYHVKIALTGCPNDCAKARMHDFGIIGM  161 (314)
T ss_pred             ccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHH----HHhh----cCCceEEEEEeCCCchhhHHHHhhcccccc
Confidence                1134556789999999999999999998765443    3332    234689999999999999999999999997


Q ss_pred             cCCce
Q 008202          564 GPNSY  568 (574)
Q Consensus       564 ~~g~Y  568 (574)
                      ....|
T Consensus       162 ~~~~~  166 (314)
T TIGR02912       162 TEPQY  166 (314)
T ss_pred             cCCce
Confidence            54433

Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.

>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]

Probab=99.75  E-value=5.4e-18  Score=177.76  Aligned_cols=219  Identities=19%  Similarity=0.184  Sum_probs=174.8

Q ss_pred             HHHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHH
Q 008202          104 TQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRS  183 (574)
Q Consensus       104 ~~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~  183 (574)
                      ..+..|+|++.|.+        +.+.+.+.++.|++-+.+++..++.+.+|+.+.++||..|||.|.+|..+....|.+.
T Consensus       408 we~~dyfGwh~q~~--------gl~f~glhVe~GRve~l~~ktglRev~e~~~~e~rlT~nQniii~nv~te~~~~i~~~  479 (638)
T KOG0560|consen  408 WERRDYFGWHKQEE--------GLSFVGLHVENGRVEALDMKTGLREVAEYGSGELRLTVNQNIIIPNVETEKTEAILQE  479 (638)
T ss_pred             hccccccccccCCC--------CceEEEEEccccccccchhhhHHHHHHHhhcceeeecccccEEecccchhhhHHHHHH
Confidence            34567899999873        5788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCC
Q 008202          184 IIRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSH  262 (574)
Q Consensus       184 L~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~  262 (574)
                      |.....+...-.| ..-..++|++ |+|+.+++++...+-.|...+.                                 
T Consensus       480 la~~~l~npefs~-L~~ss~AC~g~p~CglAi~Eser~lpkii~~ve---------------------------------  525 (638)
T KOG0560|consen  480 LALYKLDNPEFSG-LRLSSVACVGLPTCGLAIAESERRLPKIITEVE---------------------------------  525 (638)
T ss_pred             HHHhccCCcchhh-hhhhhhcccCCCcchhHHHHHhhchhHHHHHHH---------------------------------
Confidence            9444335554444 6778899997 7999999998776655544432                                 


Q ss_pred             CCCCCCCCCCcccCCCCCCc-eEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccc
Q 008202          263 GTNFPDSPEPIYGTQFLPRK-FKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQ  341 (574)
Q Consensus       263 ~~~~~~~~e~~yg~~~LPrK-fkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~  341 (574)
                               .++....||+. +-+.++||||.|.+++++||||++..     ..-|++++||+.-.        -++++.
T Consensus       526 ---------~~~e~vgl~~dsIvmr~TGCPNgCsrp~vaeig~vGka-----pnty~~~lgG~p~~--------~~l~k~  583 (638)
T KOG0560|consen  526 ---------RMFEEVGLPRDSIVMRMTGCPNGCSRPWVAEIGLVGKA-----PNTYNLMLGGGPVG--------QRLNKL  583 (638)
T ss_pred             ---------HHHHHhCCCCCceEEEeccCCCCCCcchhhheeecccC-----CcceeeecCCcchH--------HHHHHH
Confidence                     01112358887 99999999999999999999999743     24699999998532        366666


Q ss_pred             cC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHH
Q 008202          342 LG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSV  390 (574)
Q Consensus       342 l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~  390 (574)
                      .+ .|..+++.++++.++..|.=.  |.  -+|-|.+++-|+|+++-.++
T Consensus       584 ~~~~vkd~ei~~i~kpl~k~~~Le--re--~~E~fgd~~~rvg~ek~~ee  629 (638)
T KOG0560|consen  584 YGRIVKDSEIGEIYKPLFKRYALE--RE--VGEHFGDEFIRVGIEKEEEE  629 (638)
T ss_pred             HhccccHHHHHHHHhhhhhhhhhh--HH--HHHHHHHHHHhhcceecccc
Confidence            66 689999999999999888643  22  46889999999998865544

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.74  E-value=8.7e-18  Score=185.92  Aligned_cols=189  Identities=23%  Similarity=0.338  Sum_probs=150.7

Q ss_pred             hhhhHHHHHHHhhhhHHHHHHHHHhCCCC-----CCCC-----------CCC-----cccccccCCeeeecCCcEEEEEE
Q 008202          371 KYSRMKYLISSWGIEKFRSVVEQYYGKKF-----EPFR-----------QLP-----EWEFKSHLGWHEQGDGGLFCGLH  429 (574)
Q Consensus       371 ~~aRlk~li~r~G~e~fr~~ve~~~g~~~-----~~~~-----------~~~-----~~~~~~~~G~~~q~dG~~~v~v~  429 (574)
                      .+.-++.+|...|+..|.+.+++. +++.     -|+.           ..+     .-...+|  -+-|+||+|.+..+
T Consensus       482 ~~~~~~~~i~~~~~~~~~~v~~~~-~~~~gc~~c~pa~~~~l~~~~~~~~~~~~~s~~~~~~~h--aniqkdgTysvvPr  558 (793)
T COG1251         482 SRDEVVHLIRAKGLKTFPEVMNVL-GWKTGCAKCRPAINYYLASCWPDEYEDDEQSRLQNERDH--ANIQKDGTYSVVPR  558 (793)
T ss_pred             CHHHHHHHHHHhccCCHHHHHHHh-cccCCcceechhhccceeeeccCccCcchhhhhhcccch--hhcccCCeEEEecc
Confidence            356678888888998888877653 3321     1100           000     0012234  34488999999999


Q ss_pred             eCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCcc
Q 008202          430 VDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPL  508 (574)
Q Consensus       430 vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~  508 (574)
                      +|+|++++++|++|+++|++||. .+.+|..|.|-|.|+++++++++++.|...   .+.+.....|++.+|||+.+|++
T Consensus       559 m~GG~~~~~~L~~Iadva~ky~l~~vK~Tg~Qri~l~G~k~edLp~~w~~l~~~---sg~ay~k~lrtvK~Cvg~~~Cr~  635 (793)
T COG1251         559 MPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMA---SGHAYGKALRTVKTCVGSTFCRF  635 (793)
T ss_pred             ccCcccCHHHHHHHHHHHHHhCcceeeccCCceeeecCCCcccchhHHHhcccc---chhHHHHhhhhHhhCCCcchhhh
Confidence            99999999999999999999999 589999999999999999999999887544   45556777899999999999999


Q ss_pred             chhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202          509 AITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       509 al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      +..+|..+.    -+|++.+.  +++.|+|+|+.+||||+.|+.+.+.|+|++++.. +|++|+
T Consensus       636 g~qds~~Lg----i~le~~~~--gl~~P~k~k~~vSgCpr~CaEa~~KDvGii~t~~-G~~l~v  692 (793)
T COG1251         636 GTQDSVGLG----IRLEKRYE--GLRTPHKVKMAVSGCPRNCAEAGIKDVGIIGTEK-GWNLYV  692 (793)
T ss_pred             CccchhhHh----HHHHHHhc--cCCCCcceeEeeccCCcccccccCcceEEEeccc-CceEEe
Confidence            999998754    46666654  4566789999999999999999999999999854 599986

>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively

Probab=99.67  E-value=6.6e-17  Score=131.51  Aligned_cols=66  Identities=32%  Similarity=0.597  Sum_probs=60.9

Q ss_pred             EeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202          113 YQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI  184 (574)
Q Consensus       113 y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L  184 (574)
                      |+|+|.+      ++||+|+++|+|++|++|+++|+++|++||.|.||+|+||||+|+||+.+++++++++|
T Consensus         1 ~~qk~~~------g~~~v~~~~~~G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L   66 (69)
T PF03460_consen    1 HPQKDGD------GFYMVRIRIPGGRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEEL   66 (69)
T ss_dssp             EECTTST------TEEEEEEB-GGGEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHH
T ss_pred             CCCCcCC------eEEEEEEeCCCEEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHH
Confidence            5676643      57899999999999999999999999999999999999999999999999999999999

The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....

>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively

Probab=99.60  E-value=8.5e-16  Score=144.80  Aligned_cols=79  Identities=28%  Similarity=0.632  Sum_probs=67.9

Q ss_pred             CCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCC----c
Q 008202          492 PLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPN----S  567 (574)
Q Consensus       492 ~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g----~  567 (574)
                      +.+|++++|||+.+|++++.||..++..|.+++.+.+....+|  .+++|+||||||+|++|+++||||+|....    .
T Consensus         3 ~~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~~~~~~lp--~k~kI~isGCpn~C~~~~i~DIG~~g~~~~~~~~g   80 (157)
T PF01077_consen    3 DTVRNVTACPGSGFCPLALIDTKPLARELEDYLEERFEDPNLP--RKFKIAISGCPNSCARPQINDIGFIGVKKPNGEEG   80 (157)
T ss_dssp             SSBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHHHHHCSCSS--S-BEEEEESSTTSTTSGGGSSEEEEEEEESTCEEE
T ss_pred             CCCcccccCCChhhCchHHhCHHHHhhHhhhcccccccccccc--cccccceeecccccccccccccccceeeeccccce
Confidence            4568999999999999999999999998888888877766664  789999999999999999999999997542    6


Q ss_pred             eEEEE
Q 008202          568 YQVFQ  572 (574)
Q Consensus       568 Y~l~l  572 (574)
                      |+||+
T Consensus        81 ~~v~v   85 (157)
T PF01077_consen   81 FDVYV   85 (157)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            99987

The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....

>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively

Probab=99.45  E-value=1.4e-13  Score=111.89  Aligned_cols=66  Identities=32%  Similarity=0.454  Sum_probs=60.4

Q ss_pred             eeecC--CcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHC
Q 008202          417 HEQGD--GGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA  482 (574)
Q Consensus       417 ~~q~d--G~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~  482 (574)
                      |+|+|  |.|++++++|+|++++++++.|+++|++||. .||||++|||+|++|+++++++|.+.|+++
T Consensus         1 ~~qk~~~g~~~v~~~~~~G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~~   69 (69)
T PF03460_consen    1 HPQKDGDGFYMVRIRIPGGRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKEA   69 (69)
T ss_dssp             EECTTSTTEEEEEEB-GGGEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHHT
T ss_pred             CCCCcCCeEEEEEEeCCCEEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHcC
Confidence            57777  4489999999999999999999999999996 799999999999999999999999999874

The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=98.94  E-value=2.6e-08  Score=103.59  Aligned_cols=129  Identities=20%  Similarity=0.356  Sum_probs=92.7

Q ss_pred             ccccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHHH-hCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCC
Q 008202          410 FKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEK-YNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPR  488 (574)
Q Consensus       410 ~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~~-yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~  488 (574)
                      .+-|+|+.+.+.+        ..|.+.+.-  .|.-|..+ -|..||++=.++      +.+++..-++.|+.+||....
T Consensus       202 yPLHlGvTEAG~~--------~~G~iKSa~--gig~LL~~GIGDTiRVSLt~~------P~~EV~va~~IL~slglr~~g  265 (360)
T PRK00366        202 YPLHLGVTEAGMG--------FKGTVKSAA--GLGALLQEGIGDTIRVSLTAD------PVEEVKVGQEILQSLGLRSRG  265 (360)
T ss_pred             CCceecccCCCCC--------CCceehhHH--HHHHHHHhcCCCeEEEeCCCC------CHHHHHHHHHHHHHcCCccCC
Confidence            3458898887754        467776542  34444433 345688763332      467788888999999997532


Q ss_pred             CCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCCCCcccEEEEeecCCc
Q 008202          489 YVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPYMAELGLVGDGPNS  567 (574)
Q Consensus       489 ~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~~~~aDIGlvG~~~g~  567 (574)
                            .++++|||   |+....|+..++    .++++.+....    .+++|+|+|| +|+|+.+..+|||+.|. .+.
T Consensus       266 ------~~IisCPg---CgR~~~D~~~la----~~vee~~~~~~----~PlkIAVmGC~VNgpGEa~~aDIGIaG~-~~~  327 (360)
T PRK00366        266 ------PEVISCPT---CGRTEFDVIQEL----AEVEQRLEHIK----MPLKVAVMGCVVNGPGEAKEADIGIAGG-NPK  327 (360)
T ss_pred             ------CeEEECCC---CCCCcccHHHHH----HHHHHHhcCCC----CCcEEEEeCCCCCCCCchhhCcEeEecC-CCc
Confidence                  46899987   999999998765    45555555433    3499999999 59999999999999996 455


Q ss_pred             eEEEE
Q 008202          568 YQVFQ  572 (574)
Q Consensus       568 Y~l~l  572 (574)
                      |.||.
T Consensus       328 ~~vf~  332 (360)
T PRK00366        328 GPVFV  332 (360)
T ss_pred             eEEEE
Confidence            77764

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=98.76  E-value=4.9e-08  Score=101.61  Aligned_cols=111  Identities=18%  Similarity=0.231  Sum_probs=85.8

Q ss_pred             CcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChh
Q 008202          173 LKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPE  252 (574)
Q Consensus       173 ~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~  252 (574)
                      +.+.++-.++-| +++|+-..     -++|++||+  |.....|+..++.++.+.|..                      
T Consensus       245 P~~EV~va~~IL-~slglr~~-----g~~IisCPg--CgR~~~D~~~la~~vee~~~~----------------------  294 (360)
T PRK00366        245 PVEEVKVGQEIL-QSLGLRSR-----GPEVISCPT--CGRTEFDVIQELAEVEQRLEH----------------------  294 (360)
T ss_pred             CHHHHHHHHHHH-HHcCCccC-----CCeEEECCC--CCCCcccHHHHHHHHHHHhcC----------------------
Confidence            355565555555 78875422     289999996  999999999999999887631                      


Q ss_pred             hhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcC-CCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCc
Q 008202          253 VVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVP-TDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRL  331 (574)
Q Consensus       253 ~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc-~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~  331 (574)
                                              ..+|  |||+|+|| +|+|+.+..+|||+.+      ...+|.||.||..      
T Consensus       295 ------------------------~~~P--lkIAVmGC~VNgpGEa~~aDIGIaG------~~~~~~vf~~Gk~------  336 (360)
T PRK00366        295 ------------------------IKMP--LKVAVMGCVVNGPGEAKEADIGIAG------GNPKGPVFVDGEK------  336 (360)
T ss_pred             ------------------------CCCC--cEEEEeCCCCCCCCchhhCcEeEec------CCCceEEEECCEE------
Confidence                                    2456  99999999 5999999999999985      2247999999853      


Q ss_pred             cccccccccccCCCChhHHHHHHHHHHHHH
Q 008202          332 ETTFPRLGEQLGYVPKEDILYAVKAIVVTQ  361 (574)
Q Consensus       332 ~~t~p~la~~l~~v~~eev~~~~~ai~~~~  361 (574)
                                +..|+.+++++.+...++.|
T Consensus       337 ----------v~kv~~~~~~~~l~~~i~~~  356 (360)
T PRK00366        337 ----------IKTLPEENIVEELEAEIEAY  356 (360)
T ss_pred             ----------eeeeChHhHHHHHHHHHHHH
Confidence                      33589999988887777655

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=97.32  E-value=0.0082  Score=62.76  Aligned_cols=129  Identities=22%  Similarity=0.389  Sum_probs=87.9

Q ss_pred             ccccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHHH-hCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCC
Q 008202          410 FKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEK-YNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPR  488 (574)
Q Consensus       410 ~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~~-yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~  488 (574)
                      .+-|+|+.+.+.+        ..|.+.+.-  .|.-|..+ -|..||++=.      .-+.+++..-.+.|+.+||....
T Consensus       193 yPLHlGVTEAG~~--------~~G~IKSai--gig~LL~~GIGDTIRVSLT------~dP~~EV~va~~IL~slglr~~g  256 (346)
T TIGR00612       193 YPLHLGVTEAGMG--------VKGIVKSSA--GIGILLARGIGDTIRVSLT------DDPTHEVPVAFEILQSLGLRARG  256 (346)
T ss_pred             CCceeccccCCCC--------CCchhHHHH--HHHHHHhhCCCCeEEEECC------CCcHHHHHHHHHHHHHcCCCcCC
Confidence            3458898887754        467776542  34444433 3446776633      33467778888999999997532


Q ss_pred             CCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCCCCcccEEEEeecCCc
Q 008202          489 YVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPYMAELGLVGDGPNS  567 (574)
Q Consensus       489 ~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~~~~aDIGlvG~~~g~  567 (574)
                            -+++|||   +|+.-..|....    ++++++.+....    .+++|+|=|| -||=+....||||+.|.++|.
T Consensus       257 ------~~iiSCP---tCGR~~~dl~~~----~~~ve~~l~~~~----~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~  319 (346)
T TIGR00612       257 ------VEIVACP---SCGRTGFDVEKV----VRRVQEALFHLK----TPLKVAVMGCVVNGPGEAKHADIGISGGGTGS  319 (346)
T ss_pred             ------CeEEECC---CCCCcCCCHHHH----HHHHHHHHhcCC----CCCEEEEECceecCCchhhccCeeeecCCCCc
Confidence                  2589996   777766665554    456666555432    4699999999 599999999999999964665


Q ss_pred             eEEE
Q 008202          568 YQVF  571 (574)
Q Consensus       568 Y~l~  571 (574)
                      --||
T Consensus       320 ~~lF  323 (346)
T TIGR00612       320 AILF  323 (346)
T ss_pred             eEEE
Confidence            4444

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli

Probab=96.48  E-value=0.011  Score=62.43  Aligned_cols=121  Identities=19%  Similarity=0.291  Sum_probs=77.5

Q ss_pred             eEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccc
Q 008202          158 TLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYD  237 (574)
Q Consensus       158 ~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e  237 (574)
                      +||++      |.+=+.+.+.-.++-| +++++-...     =++++||  .|..-..|..+++.++.+++.        
T Consensus       236 TIRVS------Lt~~p~~EV~va~~IL-~al~lR~~g-----~~~ISCP--tCGRt~~Dl~~~~~~ie~~l~--------  293 (359)
T PF04551_consen  236 TIRVS------LTGDPVEEVKVAFEIL-QALGLRKRG-----PEIISCP--TCGRTEFDLQELVAEIEERLK--------  293 (359)
T ss_dssp             EEEE-------ECSSCCCHHHHHHHHH-HHTTSS-SS------EEEE------TT--SHHHHHHHHHHHHCC--------
T ss_pred             EEEEE------CCCCchHHHHHHHHHH-HHhCcCcCC-----ceeeeCC--CCCCccchHHHHHHHHHHHHh--------
Confidence            66664      3344455666666655 888854322     3799998  688888999999999987752        


Q ss_pred             eeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCC-CCcccccCCEEEEEEecCCCccee
Q 008202          238 MWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTD-NSVDILTNDIGVVVVSDENGEPQG  316 (574)
Q Consensus       238 ~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~-~c~~~~~~DIG~va~~~~~g~~~G  316 (574)
                                                              .|+..+||+|=||.= +-+...-+|+|+++...  |   .
T Consensus       294 ----------------------------------------~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~--g---~  328 (359)
T PF04551_consen  294 ----------------------------------------HLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGK--G---K  328 (359)
T ss_dssp             ----------------------------------------CHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-T--T---C
T ss_pred             ----------------------------------------cCCCCceEEEEeeeecCCchhhhCceeeecCCC--C---e
Confidence                                                    366788999999954 45567889999995433  2   3


Q ss_pred             EEEEEccCCCCcCCccccccccccccCC-CChhHHHHHHHHHHHHH
Q 008202          317 FNLYVGGGMGRTHRLETTFPRLGEQLGY-VPKEDILYAVKAIVVTQ  361 (574)
Q Consensus       317 f~v~vGGg~G~~~~~~~t~p~la~~l~~-v~~eev~~~~~ai~~~~  361 (574)
                      ..+|.+|..                +.. +++|++++.+..+++-|
T Consensus       329 ~~lf~~g~~----------------v~k~~~ee~~vd~L~~~I~~~  358 (359)
T PF04551_consen  329 GILFKKGEV----------------VKKVIPEEEIVDELIELIEEH  358 (359)
T ss_dssp             EEEECTTEE----------------EEEE-CSTCHHHHHHHHHHHH
T ss_pred             EEEEECCEE----------------EEecCCHHHHHHHHHHHHHhh
Confidence            688988752                333 49999988888877644

It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.

>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli

Probab=96.44  E-value=0.0057  Score=64.43  Aligned_cols=98  Identities=19%  Similarity=0.312  Sum_probs=64.7

Q ss_pred             CCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHh
Q 008202          451 NLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEK  530 (574)
Q Consensus       451 g~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~  530 (574)
                      |..||++-.      +=+.+++..-...|+..|+....      ..++|||   +|+.-..|.+..    ++++++.+..
T Consensus       234 GDTIRVSLt------~~p~~EV~va~~IL~al~lR~~g------~~~ISCP---tCGRt~~Dl~~~----~~~ie~~l~~  294 (359)
T PF04551_consen  234 GDTIRVSLT------GDPVEEVKVAFEILQALGLRKRG------PEIISCP---TCGRTEFDLQEL----VAEIEERLKH  294 (359)
T ss_dssp             -SEEEE-EC------SSCCCHHHHHHHHHHHTTSS-SS-------EEEE-------TT--SHHHHH----HHHHHHHCCC
T ss_pred             CCEEEEECC------CCchHHHHHHHHHHHHhCcCcCC------ceeeeCC---CCCCccchHHHH----HHHHHHHHhc
Confidence            446887633      44566788888999999997532      2579996   888888776654    5566666543


Q ss_pred             cCCCCCCceEEEEecC-CCcCCCCCcccEEEEeecCCceEEE
Q 008202          531 VGLKYNESVVIRVTGC-PNGCARPYMAELGLVGDGPNSYQVF  571 (574)
Q Consensus       531 ~gl~~~~~ikI~iSGC-pn~Ca~~~~aDIGlvG~~~g~Y~l~  571 (574)
                      +    +.+++|+|=|| -||=+....||||+.|.++|+-.||
T Consensus       295 l----~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf  332 (359)
T PF04551_consen  295 L----KKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILF  332 (359)
T ss_dssp             H----HCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEE
T ss_pred             C----CCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEE
Confidence            3    24799999999 5999999999999997788887776

It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.

>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

Probab=96.04  E-value=0.015  Score=66.02  Aligned_cols=81  Identities=22%  Similarity=0.412  Sum_probs=61.8

Q ss_pred             HHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCC
Q 008202          474 PITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCAR  552 (574)
Q Consensus       474 ~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~  552 (574)
                      --+..|+..|+....      ...+|||   .|+..+.+-    +++..++.+...+  ++   .++|+|=|| -||=+.
T Consensus       617 ~~~~ILQ~~~~R~~k------te~isCP---gCGRT~~dl----q~~~~~I~~~~~h--l~---GvkiavMGCIVNGPGE  678 (733)
T PLN02925        617 TSFGLLQGCRMRNTK------TEYVSCP---SCGRTLFDL----QEVSAEIREKTSH--LP---GVSIAIMGCIVNGPGE  678 (733)
T ss_pred             HHHHHHHHhCccccC------CeEEECC---CCCCccccH----HHHHHHHHHHhhc--CC---CceEEEEeeeecCCcc
Confidence            345678888876522      2478997   699888874    3445666665433  33   489999999 699999


Q ss_pred             CCcccEEEEeecCCceEEEE
Q 008202          553 PYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       553 ~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      ...||+|+||.++|+-+||+
T Consensus       679 madAd~GyVG~gpgKI~LYv  698 (733)
T PLN02925        679 MADADFGYVGGAPGKIDLYV  698 (733)
T ss_pred             ccccccceeccCCCeeEEEe
Confidence            99999999999999999996

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=95.99  E-value=0.032  Score=58.24  Aligned_cols=128  Identities=23%  Similarity=0.381  Sum_probs=85.5

Q ss_pred             cccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHHH-hCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCC
Q 008202          411 KSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEK-YNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRY  489 (574)
Q Consensus       411 ~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~~-yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~  489 (574)
                      +-|+|+.+.+.+.        .|.+.+.  -+|.-|..+ -|..||++=.      .=+.+++.--.+.|+.+|+.... 
T Consensus       196 PLHLGvTEAG~~~--------~G~VkSa--~alg~LL~eGIGDTIRVSLt------~~P~~EV~V~~eILqslglR~~~-  258 (361)
T COG0821         196 PLHLGVTEAGMGF--------KGIVKSA--AALGALLSEGIGDTIRVSLT------ADPVEEVKVAQEILQSLGLRSRG-  258 (361)
T ss_pred             CcccceecccCcc--------cceehHH--HHHHHHHHhcCCceEEEecC------CCchhhhHHHHHHHHHhCccccC-
Confidence            4588988877653        4555443  234444433 3555765422      22366677777899999997532 


Q ss_pred             CCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCCCCcccEEEEeecCCce
Q 008202          490 VDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPYMAELGLVGDGPNSY  568 (574)
Q Consensus       490 ~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~~~~aDIGlvG~~~g~Y  568 (574)
                           -+++|||   +|+....|....+    .++++.+.+..    .+++|.|-|| -||=+....||||+.|.+.+.-
T Consensus       259 -----v~~iaCP---~CGR~~~dv~~~~----~~~~~~~~~~~----~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~  322 (361)
T COG0821         259 -----VEVIACP---TCGRTEFDVIQTL----NEVEQRLEHLK----TPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSG  322 (361)
T ss_pred             -----ceEEECC---CCCceeehHHHHH----HHHHHHhhccC----CCceEEEEEeEecCCcchhccceeeecCCCCee
Confidence                 3589996   8999888876654    45555554433    3599999999 6999999999999999755543


Q ss_pred             EEE
Q 008202          569 QVF  571 (574)
Q Consensus       569 ~l~  571 (574)
                      .+|
T Consensus       323 ~~f  325 (361)
T COG0821         323 PVF  325 (361)
T ss_pred             EEE
Confidence            343

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=95.82  E-value=0.057  Score=56.63  Aligned_cols=118  Identities=17%  Similarity=0.203  Sum_probs=79.5

Q ss_pred             CeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCccccc
Q 008202          157 GTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYY  236 (574)
Q Consensus       157 g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~  236 (574)
                      .|||++=      .+=+.+.++-.++-| +++|+-...     =++++||  .|..-..|..+++.++.+.|.       
T Consensus       226 DTIRVSL------T~dP~~EV~va~~IL-~slglr~~g-----~~iiSCP--tCGR~~~dl~~~~~~ve~~l~-------  284 (346)
T TIGR00612       226 DTIRVSL------TDDPTHEVPVAFEIL-QSLGLRARG-----VEIVACP--SCGRTGFDVEKVVRRVQEALF-------  284 (346)
T ss_pred             CeEEEEC------CCCcHHHHHHHHHHH-HHcCCCcCC-----CeEEECC--CCCCcCCCHHHHHHHHHHHHh-------
Confidence            3666642      233355666666666 888754322     4899998  687777888899999877753       


Q ss_pred             ceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCC-CCCcccccCCEEEEEEecCCCcce
Q 008202          237 DMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPT-DNSVDILTNDIGVVVVSDENGEPQ  315 (574)
Q Consensus       237 e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~-~~c~~~~~~DIG~va~~~~~g~~~  315 (574)
                                                               .++..+||+|=||. |+-..+.-+|||+.+..    . .
T Consensus       285 -----------------------------------------~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg----~-g  318 (346)
T TIGR00612       285 -----------------------------------------HLKTPLKVAVMGCVVNGPGEAKHADIGISGGG----T-G  318 (346)
T ss_pred             -----------------------------------------cCCCCCEEEEECceecCCchhhccCeeeecCC----C-C
Confidence                                                     24445899999995 45667788999998631    1 2


Q ss_pred             eEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHH
Q 008202          316 GFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAI  357 (574)
Q Consensus       316 Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai  357 (574)
                      ...||..|.                .+..|+.+++++.+...
T Consensus       319 ~~~lF~~G~----------------~~~kv~~~~~~~~l~~~  344 (346)
T TIGR00612       319 SAILFKRGK----------------PKAKQPETDMADELIRL  344 (346)
T ss_pred             ceEEEECCE----------------EeEecCHHHHHHHHHHh
Confidence            356777764                23458999888766554

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=95.44  E-value=0.15  Score=53.33  Aligned_cols=116  Identities=21%  Similarity=0.255  Sum_probs=78.5

Q ss_pred             cCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhh
Q 008202          174 KKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEV  253 (574)
Q Consensus       174 ~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~  253 (574)
                      .+.++-..+-| +.+|+-...     =|+++||  .|.....|....+.++.+.+.                        
T Consensus       239 ~~EV~V~~eIL-qslglR~~~-----v~~iaCP--~CGR~~~dv~~~~~~~~~~~~------------------------  286 (361)
T COG0821         239 VEEVKVAQEIL-QSLGLRSRG-----VEVIACP--TCGRTEFDVIQTLNEVEQRLE------------------------  286 (361)
T ss_pred             hhhhHHHHHHH-HHhCccccC-----ceEEECC--CCCceeehHHHHHHHHHHHhh------------------------
Confidence            34444333434 777753222     4899998  698888888888888876642                        


Q ss_pred             hhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcC-CCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCcc
Q 008202          254 VKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVP-TDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLE  332 (574)
Q Consensus       254 ~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc-~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~  332 (574)
                                              .++-.+||+|-|| -|+-+...-+|||+.+...     ..-.+|++|..-      
T Consensus       287 ------------------------~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~-----~~~~~f~~g~~~------  331 (361)
T COG0821         287 ------------------------HLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGK-----GSGPVFVKGEII------  331 (361)
T ss_pred             ------------------------ccCCCceEEEEEeEecCCcchhccceeeecCCC-----CeeEEEECCeEE------
Confidence                                    2334489999999 4556677889999997432     234678887521      


Q ss_pred             ccccccccccCCCChhHHHHHHHHHHHHHHHhCC
Q 008202          333 TTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGR  366 (574)
Q Consensus       333 ~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~  366 (574)
                                -.++.+++++-+.++++-|-+...
T Consensus       332 ----------~~~~~~~~~eel~~~i~~~~~~~~  355 (361)
T COG0821         332 ----------KKLPEEDIVEELEALIEAYAEERD  355 (361)
T ss_pred             ----------EecChhhHHHHHHHHHHHHHHHhh
Confidence                      237888888888888877766543

>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

Probab=94.82  E-value=0.74  Score=52.79  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=75.8

Q ss_pred             cCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCC
Q 008202          170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAE  249 (574)
Q Consensus       170 ~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~  249 (574)
                      .|.+.+....+-..|.+++++-..     .-.+++||  .|.....|-++++.+|.++.                     
T Consensus       607 ~~~~~~~~~~~~~~ILQ~~~~R~~-----kte~isCP--gCGRT~~dlq~~~~~I~~~~---------------------  658 (733)
T PLN02925        607 PDQDFDFLRNTSFGLLQGCRMRNT-----KTEYVSCP--SCGRTLFDLQEVSAEIREKT---------------------  658 (733)
T ss_pred             CCCCHHHHHHHHHHHHHHhCcccc-----CCeEEECC--CCCCccccHHHHHHHHHHHh---------------------
Confidence            344444444545555466663222     13688998  68888888889999887652                     


Q ss_pred             ChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCC-CCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCc
Q 008202          250 PPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPT-DNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRT  328 (574)
Q Consensus       250 ~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~-~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~  328 (574)
                                                 ..||. .||+|=||. |+-+..--+|+|+|+...     ..-++|+|--    
T Consensus       659 ---------------------------~hl~G-vkiavMGCIVNGPGEmadAd~GyVG~gp-----gKI~LYvgKe----  701 (733)
T PLN02925        659 ---------------------------SHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAP-----GKIDLYVGKE----  701 (733)
T ss_pred             ---------------------------hcCCC-ceEEEEeeeecCCccccccccceeccCC-----CeeEEEecce----
Confidence                                       12553 599999995 445556678999998653     3579999842    


Q ss_pred             CCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCC
Q 008202          329 HRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGR  366 (574)
Q Consensus       329 ~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~  366 (574)
                                  .+. .||.+++++-   +++.-+++|+
T Consensus       702 ------------cV~~nIpeeeAvd~---LIeLIKe~G~  725 (733)
T PLN02925        702 ------------VVKRGIAMEEATDA---LIQLIKDHGR  725 (733)
T ss_pred             ------------ehhcCCCHHHHHHH---HHHHHHHcCc
Confidence                        122 4898887554   4555556665

>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated

Probab=94.76  E-value=0.063  Score=59.87  Aligned_cols=79  Identities=27%  Similarity=0.437  Sum_probs=59.0

Q ss_pred             HHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCCCC
Q 008202          476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPY  554 (574)
Q Consensus       476 ~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~~~  554 (574)
                      ...|+..++....      ...+|||   .|+..+.|-+..    ..++.+....  ++   .+||+|-|| -||=+.-.
T Consensus       495 f~ILQaaR~R~sK------te~isCP---~CgRtlfdlq~t----~~~i~~~t~H--l~---g~kIaiMGCiVNGpGEma  556 (606)
T PRK00694        495 FGTLQSAGVRLVK------TEYISCP---GCGRTLFDLLEV----TQRIRERTQH--LP---GLKIAVMGCIVNGPGEMA  556 (606)
T ss_pred             HHHHHHhcccccc------ceEEECC---CCCceeehHHHH----HHHHHHHhcc--CC---CceEEEEEeEecCCcccc
Confidence            4566666655422      2468997   699888875443    4566655433  32   599999999 69999999


Q ss_pred             cccEEEEeecCCceEEEE
Q 008202          555 MAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       555 ~aDIGlvG~~~g~Y~l~l  572 (574)
                      -||+|++|.++|+-+||+
T Consensus       557 dAd~GyVG~gpgkI~LY~  574 (606)
T PRK00694        557 DADFGFVGSKTGMIDLYV  574 (606)
T ss_pred             ccccceecCCCCeEEEEe
Confidence            999999999999999996

>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA

Probab=94.13  E-value=0.047  Score=63.16  Aligned_cols=46  Identities=15%  Similarity=0.203  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCC
Q 008202          145 LTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGST  191 (574)
Q Consensus       145 ~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t  191 (574)
                      -.|+++|++||++.|++|+||.+.|.||+.++++++.++| .+.|++
T Consensus       278 ~~I~eiA~kyG~g~I~tt~r~~~elp~i~~~die~i~~~L-~~~glp  323 (731)
T cd01916         278 ADILEEAQKLGIPVIATNDKIMLGLPDVTDEDPDKIVEDL-VSGKIP  323 (731)
T ss_pred             ccHHHHHHHhCCCEEEechhhhcCCCCCccccHHHHHHHH-HhCCCC
Confidence            3689999999999999999999999999999999999999 777654

ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.

>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional

Probab=93.08  E-value=0.13  Score=57.84  Aligned_cols=79  Identities=24%  Similarity=0.453  Sum_probs=58.7

Q ss_pred             HHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecC-CCcCCCCC
Q 008202          476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPY  554 (574)
Q Consensus       476 ~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGC-pn~Ca~~~  554 (574)
                      ...|+...+....      ..-+|||   .|+..+.|-+..    ..+|.+...+  |+   .+||+|=|| -||=+.-.
T Consensus       503 f~ILQa~r~R~sK------TEyISCP---sCGRTLfDLq~t----ta~Ik~~t~H--Lk---GlkI~IMGCIVNGPGEMA  564 (611)
T PRK02048        503 FGILQAGRLRTSK------TEYISCP---GCGRTLYDLQST----IARIKEATSH--LK---GLKIGIMGCIVNGPGEMA  564 (611)
T ss_pred             HHHHHHhcccccc------ceEEECC---CCCcchhhHHHH----HHHHHHHhCC--CC---CceEEEEEeEecCCchhh
Confidence            3556665554321      2358996   699999886554    4556655433  32   599999999 79999999


Q ss_pred             cccEEEEeecCCceEEEE
Q 008202          555 MAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       555 ~aDIGlvG~~~g~Y~l~l  572 (574)
                      -||.|.||.++|+-+||+
T Consensus       565 DADfGYVG~gpgkI~LY~  582 (611)
T PRK02048        565 DADYGYVGAGRGKISLYK  582 (611)
T ss_pred             hcccceecCCCCeEEEEe
Confidence            999999999999999996

>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated

Probab=91.90  E-value=1.3  Score=49.85  Aligned_cols=92  Identities=21%  Similarity=0.246  Sum_probs=64.1

Q ss_pred             cceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCC
Q 008202          200 RNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFL  279 (574)
Q Consensus       200 RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~L  279 (574)
                      -+.++||  .|...++|-++.+.+|.+..                                                ..|
T Consensus       508 te~isCP--~CgRtlfdlq~t~~~i~~~t------------------------------------------------~Hl  537 (606)
T PRK00694        508 TEYISCP--GCGRTLFDLLEVTQRIRERT------------------------------------------------QHL  537 (606)
T ss_pred             ceEEECC--CCCceeehHHHHHHHHHHHh------------------------------------------------ccC
Confidence            3688998  68888888888888876542                                                135


Q ss_pred             CCceEEEEEcCC-CCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHH
Q 008202          280 PRKFKVAVTVPT-DNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAI  357 (574)
Q Consensus       280 PrKfkI~isgc~-~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai  357 (574)
                      | -.||+|-||- |+-+..--+|+|+|+...     ..-++|+|=-                .+. .||.+++++   .+
T Consensus       538 ~-g~kIaiMGCiVNGpGEmadAd~GyVG~gp-----gkI~LY~gKe----------------cV~~nIPee~Avd---~L  592 (606)
T PRK00694        538 P-GLKIAVMGCIVNGPGEMADADFGFVGSKT-----GMIDLYVKHT----------------CVKAHIPMENAEE---EL  592 (606)
T ss_pred             C-CceEEEEEeEecCCccccccccceecCCC-----CeEEEEecce----------------ehhcCCCHHHHHH---HH
Confidence            5 4899999994 445556678999998543     3579999832                122 489887755   45


Q ss_pred             HHHHHHhCC
Q 008202          358 VVTQRENGR  366 (574)
Q Consensus       358 ~~~~rd~g~  366 (574)
                      ++.-+++|.
T Consensus       593 I~LIke~G~  601 (606)
T PRK00694        593 VQLLKEHGV  601 (606)
T ss_pred             HHHHHHcCC
Confidence            555566665

>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional

Probab=89.97  E-value=1.1  Score=50.52  Aligned_cols=91  Identities=16%  Similarity=0.201  Sum_probs=62.8

Q ss_pred             ceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCC
Q 008202          201 NVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP  280 (574)
Q Consensus       201 NV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LP  280 (574)
                      .-++||  .|...++|-++...+|.++.                                                ..||
T Consensus       517 EyISCP--sCGRTLfDLq~tta~Ik~~t------------------------------------------------~HLk  546 (611)
T PRK02048        517 EYISCP--GCGRTLYDLQSTIARIKEAT------------------------------------------------SHLK  546 (611)
T ss_pred             eEEECC--CCCcchhhHHHHHHHHHHHh------------------------------------------------CCCC
Confidence            357887  69999999999888886542                                                2365


Q ss_pred             CceEEEEEcCCC-CCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHH
Q 008202          281 RKFKVAVTVPTD-NSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIV  358 (574)
Q Consensus       281 rKfkI~isgc~~-~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~  358 (574)
                      . .||||=||-= +-+.---+|.|.|+...     ..-++|+|--                .+. .||.|++++-   ++
T Consensus       547 G-lkI~IMGCIVNGPGEMADADfGYVG~gp-----gkI~LY~gke----------------~V~~nIp~e~Avd~---Li  601 (611)
T PRK02048        547 G-LKIGIMGCIVNGPGEMADADYGYVGAGR-----GKISLYKQKE----------------CVEKNIPEEEAVER---LI  601 (611)
T ss_pred             C-ceEEEEEeEecCCchhhhcccceecCCC-----CeEEEEeccE----------------EEecCCCHHHHHHH---HH
Confidence            5 8999999954 44445568999997543     3478999842                122 4898887554   45


Q ss_pred             HHHHHhCC
Q 008202          359 VTQRENGR  366 (574)
Q Consensus       359 ~~~rd~g~  366 (574)
                      +.-+++|+
T Consensus       602 ~LIk~~g~  609 (611)
T PRK02048        602 ELIKANGD  609 (611)
T ss_pred             HHHHHcCC
Confidence            55556664

>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated

Probab=87.00  E-value=0.69  Score=53.97  Aligned_cols=43  Identities=14%  Similarity=0.232  Sum_probs=40.1

Q ss_pred             HHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC
Q 008202          146 TMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG  189 (574)
Q Consensus       146 ~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g  189 (574)
                      .|.++|++||.+.|.+|+||.+.|.||+.++++++.++| .+.+
T Consensus       316 ~L~eiA~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L-~~~~  358 (781)
T PRK00941        316 DILEEAKKLGIPVIATNDKICLGLPDRTDEDVDEIIEDL-VSGK  358 (781)
T ss_pred             cHHHHHHHhCCCEEEecccccccCCCCCccCHHHHHHHH-HhCC
Confidence            578999999999999999999999999999999999999 6555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	574
4g38_A	570	Mutational Analysis Of Sulfite Reductase Hemoprotei		2e-76
4g39_A	570	Mutational Analysis Of Sulfite Reductase Hemoprotei		5e-76
1aop_A	497	Sulfite Reductase Structure At 1.6 Angstrom Resolut		7e-71
4htr_A	507	N149w Variant Of Sirhp Bound To Sulfite Length = 50		1e-70
1zj8_A	566	Structure Of Mycobacterium Tuberculosis Nira Protei		2e-24
3b0h_A	588	Assimilatory Nitrite Reductase (Nii4) From Tobbaco		1e-20
3vlx_A	584	Assimilatory Nitrite Reductase (Nii3) - N226k Mutan		6e-20
3b0l_A	584	M175g Mutant Of Assimilatory Nitrite Reductase (Nii		1e-19
3b0g_A	591	Assimilatory Nitrite Reductase (Nii3) From Tobbaco		3e-19
3b0n_A	584	Q448k Mutant Of Assimilatory Nitrite Reductase (Nii		3e-19
3b0j_A	584	M175e Mutant Of Assimilatory Nitrite Reductase (Nii		3e-19
3b0m_A	584	M175k Mutant Of Assimilatory Nitrite Reductase (Nii		3e-19
2akj_A	608	Structure Of Spinach Nitrite Reductase Length = 608		1e-18

>pdb|4G38|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein Reveals The Mechanism For Coordinated Electron And Proton Transfer Length = 570

Iteration: 1
 Score =  283 bits (724), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 176/515 (34%), Positives = 268/515 (52%), Gaps = 53/515 (10%)
Query: 77  IKEQSNFIRYPLNEELLTDAPNVNESATQ--------LIKFHGSYQQYNRDERGAKS--- 125
           +K +SN++R  + E+L       N+  T         LI+FHG YQQ +RD R  ++   
Sbjct: 21  MKHESNYLRGTIAEDL-------NDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQK 73
Query: 126 ----YSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GXXXXXXXXXXXXHGVLKKDLKTV 180
               ++ +LR + P G ++ + +  +D  A +  I G            HG+LKK++K V
Sbjct: 74  LEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPV 133
Query: 181 MRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMW 239
              ++ S+G   L    D+NRNVL    P   + +  A + A+ I+  L P++  Y ++W
Sbjct: 134 -HQMLHSVGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIW 192
Query: 240 VDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILT 299
           +D E++ T +                     EPI G  +LPRKFK  V +P  N +D+  
Sbjct: 193 LDQEKVATTDE--------------------EPILGQTYLPRKFKTTVVIPPQNDIDLHA 232
Query: 300 NDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVV 359
           ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V 
Sbjct: 233 NDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVT 291
Query: 360 TQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQ 419
           TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW + 
Sbjct: 292 TQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKG 351
Query: 420 GDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPI 475
            D      L ++NGRI    A  +K  L EI + +  + RIT NQN+I+  + ++ K  I
Sbjct: 352 IDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKI 411
Query: 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKY 535
                ++GL+    V P    +MAC S P CPLA+ EAER +P  +  I  +  K G+  
Sbjct: 412 EKIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS- 468
Query: 536 NESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQV 570
           +E +V+RVTGCPNGC R  +AE+GLVG  P  Y +
Sbjct: 469 DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNL 503

>pdb|4G39|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein Reveals The Mechanism For Coordinated Electron And Proton Transfer Length = 570

Iteration: 1
 Score =  281 bits (720), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 175/515 (33%), Positives = 267/515 (51%), Gaps = 53/515 (10%)
Query: 77  IKEQSNFIRYPLNEELLTDAPNVNESATQ--------LIKFHGSYQQYNRDERGAKS--- 125
           +K +SN++R  + E+L       N+  T         LI+FHG YQQ +RD R  ++   
Sbjct: 21  MKHESNYLRGTIAEDL-------NDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQK 73
Query: 126 ----YSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GXXXXXXXXXXXXHGVLKKDLKTV 180
               ++ +LR + P G ++ + +  +D  A +  I G            HG+LKK++K V
Sbjct: 74  LEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPV 133
Query: 181 MRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMW 239
              ++ S+G   L    D+N NVL    P   + +  A + A+ I+  L P++  Y ++W
Sbjct: 134 -HQMLHSVGLDALATANDMNSNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIW 192
Query: 240 VDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILT 299
           +D E++ T +                     EPI G  +LPRKFK  V +P  N +D+  
Sbjct: 193 LDQEKVATTDE--------------------EPILGQTYLPRKFKTTVVIPPQNDIDLHA 232
Query: 300 NDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVV 359
           ND+  V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V 
Sbjct: 233 NDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVT 291
Query: 360 TQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQ 419
           TQR+ G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW + 
Sbjct: 292 TQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKG 351
Query: 420 GDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPI 475
            D      L ++NGRI    A  +K  L EI + +  + RIT NQN+I+  + ++ K  I
Sbjct: 352 IDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKI 411
Query: 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKY 535
                ++GL+    V P    +MAC S P CPLA+ EAER +P  +  I  +  K G+  
Sbjct: 412 EKIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS- 468
Query: 536 NESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQV 570
           +E +V+RVTGCPNGC R  +AE+GLVG  P  Y +
Sbjct: 469 DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNL 503

>pdb|1AOP|A Chain A, Sulfite Reductase Structure At 1.6 Angstrom Resolution Length = 497

Iteration: 1
 Score =  265 bits (676), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 238/451 (52%), Gaps = 31/451 (6%)
Query: 126 YSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GXXXXXXXXXXXXHGVLKKDLKTVMRSI 184
           ++ +LR + P G ++ + +  +D  A +  I G            HG+LKK++K V   +
Sbjct: 5   HAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPV-HQM 63
Query: 185 IRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGE 243
           + S+G   L    D+NRNVL    P   + +  A + A+ I+  L P++  Y ++W+D E
Sbjct: 64  LHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQE 123
Query: 244 QIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIG 303
           ++ T +                     EPI G  +LPRKFK  V +P  N +D+  ND+ 
Sbjct: 124 KVATTDE--------------------EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMN 163
Query: 304 VVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRE 363
            V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+
Sbjct: 164 FVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRD 222
Query: 364 NGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGG 423
            G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D  
Sbjct: 223 WGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDN 282
Query: 424 LFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTAL 479
               L ++NGRI    A  +K  L EI + +  + RIT NQN+I+  + ++ K  I    
Sbjct: 283 WHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIA 342
Query: 480 AQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESV 539
            ++GL+    V P    +MAC S P CPLA+ EAER +P  +  I  +  K G+  +E +
Sbjct: 343 KESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS-DEHI 399
Query: 540 VIRVTGCPNGCARPYMAELGLVGDGPNSYQV 570
           V+RVTGCPNGC R  +AE+GLVG  P  Y +
Sbjct: 400 VMRVTGCPNGCGRAMLAEVGLVGKAPGRYNL 430

>pdb|4HTR|A Chain A, N149w Variant Of Sirhp Bound To Sulfite Length = 507

Iteration: 1
 Score =  263 bits (673), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 159/454 (35%), Positives = 241/454 (53%), Gaps = 37/454 (8%)
Query: 126 YSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GXXXXXXXXXXXXHGVLKKDLKTVMRSI 184
           ++ +LR + P G ++ + +  +D  A +  I G            HG+LKK++K V   +
Sbjct: 15  HAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPV-HQM 73
Query: 185 IRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGE 243
           + S+G   L    D+NRNVL    P   + +  A + A+ I+  L P++  Y ++W+D E
Sbjct: 74  LHSVGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQE 133
Query: 244 QIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIG 303
           ++ T +                     EPI G  +LPRKFK  V +P  N +D+  ND+ 
Sbjct: 134 KVATTDE--------------------EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMN 173
Query: 304 VVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRE 363
            V ++ ENG+  GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+
Sbjct: 174 FVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRD 232
Query: 364 NGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFK---SHLGWHEQG 420
            G R DRK ++ KY +   G+E F++ VE+  G KFEP R    +EF      +GW +  
Sbjct: 233 WGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRP---YEFTGRGDRIGWVKGI 289
Query: 421 DGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPIT 476
           D      L ++NGRI    A  +K  L EI + +  + RIT NQN+I+  + ++ K  I 
Sbjct: 290 DDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIE 349
Query: 477 TALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYN 536
               ++GL+    V P    +MAC S P CPLA+ EAER +P  +  I  +  K G+  +
Sbjct: 350 KIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS-D 406
Query: 537 ESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQV 570
           E +V+RVTGCPNGC R  +AE+GLVG  P  Y +
Sbjct: 407 EHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNL 440

>pdb|1ZJ8|A Chain A, Structure Of Mycobacterium Tuberculosis Nira Protein Length = 566

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/446 (24%), Positives = 189/446 (42%), Gaps = 71/446 (15%)
Query: 128 FMLRTKNPCGKVSNQLYLTMDDLADQFGIGXXXXXXXXXXXXHGVLKKDLKTVMRSIIRS 187
           FM+R +   G +S     T+  ++ +F               H +  +++  + R +   
Sbjct: 105 FMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDV 164
Query: 188 MGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMT 247
              T  ACGD  R VL  P               E++  +L P                T
Sbjct: 165 GLQTTEACGDCPRVVLGSPL------------AGESLDEVLDP----------------T 196
Query: 248 AEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVV 307
               E+V+           PD  +       LPRK+K A++   D + +I  ND+  + V
Sbjct: 197 WAIEEIVRRY------IGKPDFAD-------LPRKYKTAISGLQDVAHEI--NDVAFIGV 241
Query: 308 SDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGR 366
           +     P G +L+VGGG+       +T P L +++G +VP  ++     A+    R+ G 
Sbjct: 242 NHPEHGP-GLDLWVGGGL-------STNPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGY 293
Query: 367 RDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFK----SHLGWHEQGDG 422
           R  R  +R+K+LI  WGI KFR V+E  Y K+  P    P  E       H+G     +G
Sbjct: 294 RRLRAKARLKFLIKDWGIAKFREVLETEYLKR--PLIDGPAPEPVKHPIDHVGVQRLKNG 351
Query: 423 GLFCGLHVDNGRIAGKMKKTLREIIEKYNLN-VRITPNQNIILCDIRKAWKRPITTALAQ 481
               G+    GR++G +   + +++ +   + +R TP Q +++ DI  A    +   L  
Sbjct: 352 LNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDA 411
Query: 482 AGLL-LPRYVDPLNITAMACPSLPLCPLAITE----AERGIPDILKRIRAVFEKVGLKYN 536
            GL   P +        MAC  +  C L+  E    A+  +P++ +R+    E +  + +
Sbjct: 412 LGLQSRPSH---WRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRL----EDINSQLD 464
Query: 537 ESVVIRVTGCPNGCARPYMAELGLVG 562
             + + + GCPN CAR  +A++G  G
Sbjct: 465 VPITVNINGCPNSCARIQIADIGFKG 490

>pdb|3B0H|A Chain A, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root Length = 588

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 177/417 (42%), Gaps = 56/417 (13%)
Query: 170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLN-------RNVLAPPAPLVRKDYLFAQKTAE 222
           +GV        + S+IR  G     C D+        R V+ P  P + K          
Sbjct: 140 NGVTTSSQTRYLASVIRKYGKD--GCADVTTRQNWQIRGVVLPDVPEILKGL-------- 189
Query: 223 NIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKAR---NDNSH--GTNFPDSPEPIYGTQ 277
           +   L + QSG        G  +   +P E+V  R   N  S     NF  +P       
Sbjct: 190 DEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSQYVTANFRGNP----AVT 245
Query: 278 FLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPR 337
            LPRK+ V V    D       ND+  +  + +     GFNL VGG      R     P 
Sbjct: 246 NLPRKWNVCVIGSHDLYEHPQINDLAYMPATKDGR--FGFNLLVGGFFS-PKRCAEAVP- 301
Query: 338 LGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRS-VVEQYYG 396
                 +VP +D++   KAI+   R+ G R +R+ +RM +L+   G+E FR+ VV++   
Sbjct: 302 ---LDAWVPADDVVPVCKAILEAYRDLGTRGNRQKTRMMWLVDELGVEGFRAEVVKRMPQ 358
Query: 397 KKF--EPFRQL--PEWEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYN 451
           +K   E    L   +WE + +LG H Q   G  F GLH+  GR+       L  + ++Y 
Sbjct: 359 QKLDRESTEDLVQKQWERREYLGVHPQKQEGYSFVGLHIPVGRVQADDMDELARLADEYG 418
Query: 452 L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRY-VDP--LNITAMACPSLPLCP 507
              +R+T  QNII+ +++ +       AL    LL  R+  DP  L    +AC     C 
Sbjct: 419 SGELRLTVEQNIIIPNVKNS----KIEALLNEPLLKNRFSTDPPILMKNLVACTGNQFCG 474
Query: 508 LAITEAERGIPDILKRIRAVFEKVGL--KYNESVVIRVTGCPNGCARPYMAELGLVG 562
            AI E +        R   + E+V L     + V +  TGCPN CA+  +A++G +G
Sbjct: 475 KAIIETK-------ARSMKITEEVQLLVSITQPVRMHWTGCPNSCAQVQVADIGFMG 524

>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - Ligand Free Form From Tobacco Leaf Length = 584

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 174/411 (42%), Gaps = 45/411 (10%)
Query: 170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLN-------RNVLAPPAPLVRKDYLFAQKTAE 222
           +GV        + S+IR  G     C D+        R V+ P  P + K        AE
Sbjct: 143 NGVTTSAQTRYLASVIRKYGKE--GCADITTRQNWQIRGVVLPDVPEILKGL------AE 194
Query: 223 NIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF-PDSPEPIYGTQFLPR 281
               L + QSG        G  +   +P E+V  R   +  + F   +         LPR
Sbjct: 195 --VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPR 252
Query: 282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQ 341
           K+K  V    D       ND+  +  + +     GFNL VGG      R +   P     
Sbjct: 253 KWKPCVVGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIP----L 305
Query: 342 LGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEP 401
             +VP +D++   +AI+   R+ G R +R+  RM +LI   G+E FR+ VE+   ++ + 
Sbjct: 306 DAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ-QL 364
Query: 402 FRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-N 453
            R  PE      WE + +LG H Q   G  F GLH+  GR+       L  + ++Y    
Sbjct: 365 ERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGE 424
Query: 454 VRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPLAIT 511
           +R+T  QNII+ +I  +       AL +  +L     DP  L    +AC     C  AI 
Sbjct: 425 IRLTVEQNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAII 480
Query: 512 EAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
           E +      LK    V  +V L   + V +  TGCPN CA+  +A++G +G
Sbjct: 481 ETK---ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526

>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf Length = 584

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 187/465 (40%), Gaps = 74/465 (15%)
Query: 109 FHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GXXXXXXXXXX 167
           FH    QY R         FM+R K P G  ++     +  +  ++G  G          
Sbjct: 125 FHRRKNQYGR---------FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNW 175
Query: 168 XXHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAAL 227
              GV+  D+  +++ +     ++L + GD  RN +  P   +  + +   +   N+ + 
Sbjct: 176 QIRGVVLPDVPEILKGLAEVGLTSLQSGGDNVRNPVGNPLAGIDPEEIVDTRPYTNLLS- 234
Query: 228 LTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAV 287
                           Q +T            NS G               LPRK+   V
Sbjct: 235 ----------------QFITG-----------NSRGNP---------AVSNLPRKWNPCV 258
Query: 288 TVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPK 347
               D       ND+  +  + +     GFNL VGG      R +   P       +VP 
Sbjct: 259 VGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIP----LDAWVPA 311
Query: 348 EDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPE 407
           +D++   +AI+   R+ G R +R+  RM +LI   G+E FR+ VE+   ++ +  R  PE
Sbjct: 312 DDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ-QLERASPE 370
Query: 408 ------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPN 459
                 WE + +LG H Q   G  F GLH+  GR+       L  + ++Y    +R+T  
Sbjct: 371 DLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVE 430
Query: 460 QNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPLAITEAERGI 517
           QNII+ +I  +       AL +  +L     DP  L    +AC     C  AI E +   
Sbjct: 431 QNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETK--- 483
Query: 518 PDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
              LK    V  +V L   + V +  TGCPN CA+  +A++G +G
Sbjct: 484 ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526

>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf Length = 591

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 173/411 (42%), Gaps = 45/411 (10%)
Query: 170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLN-------RNVLAPPAPLVRKDYLFAQKTAE 222
           +GV        + S+IR  G     C D+        R V+ P  P + K        AE
Sbjct: 143 NGVTTSAQTRYLASVIRKYGKE--GCADITTRQNWQIRGVVLPDVPEILKGL------AE 194
Query: 223 NIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF-PDSPEPIYGTQFLPR 281
               L + QSG        G  +   +P E+V  R   +  + F   +         LPR
Sbjct: 195 --VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPR 252
Query: 282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQ 341
           K+   V    D       ND+  +  + +     GFNL VGG      R +   P     
Sbjct: 253 KWNPCVVGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIPLDA-- 307
Query: 342 LGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEP 401
             +VP +D++   +AI+   R+ G R +R+  RM +LI   G+E FR+ VE+   ++ + 
Sbjct: 308 --WVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ-QL 364
Query: 402 FRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-N 453
            R  PE      WE + +LG H Q   G  F GLH+  GR+       L  + ++Y    
Sbjct: 365 ERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGE 424
Query: 454 VRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPLAIT 511
           +R+T  QNII+ +I  +       AL +  +L     DP  L    +AC     C  AI 
Sbjct: 425 IRLTVEQNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAII 480
Query: 512 EAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
           E +      LK    V  +V L   + V +  TGCPN CA+  +A++G +G
Sbjct: 481 ETK---ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526

>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf Length = 584

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 173/411 (42%), Gaps = 45/411 (10%)
Query: 170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLN-------RNVLAPPAPLVRKDYLFAQKTAE 222
           +GV        + S+IR  G     C D+        R V+ P  P + K        AE
Sbjct: 143 NGVTTSAQTRYLASVIRKYGKE--GCADITTRQNWQIRGVVLPDVPEILKGL------AE 194
Query: 223 NIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF-PDSPEPIYGTQFLPR 281
               L + QSG        G  +   +P E+V  R   +  + F   +         LPR
Sbjct: 195 --VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPR 252
Query: 282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQ 341
           K+   V    D       ND+  +  + +     GFNL VGG      R +   P     
Sbjct: 253 KWNPCVVGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIP----L 305
Query: 342 LGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEP 401
             +VP +D++   +AI+   R+ G R +R+  RM +LI   G+E FR+ VE+   ++ + 
Sbjct: 306 DAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ-QL 364
Query: 402 FRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-N 453
            R  PE      WE + +LG H Q   G  F GLH+  GR+       L  + ++Y    
Sbjct: 365 ERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGE 424
Query: 454 VRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPLAIT 511
           +R+T  QNII+ +I  +       AL +  +L     DP  L    +AC     C  AI 
Sbjct: 425 IRLTVEQNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGKAII 480
Query: 512 EAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
           E +      LK    V  +V L   + V +  TGCPN CA+  +A++G +G
Sbjct: 481 ETK---ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526

>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf Length = 584

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 135/294 (45%), Gaps = 27/294 (9%)
Query: 279 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRL 338
           LPRK+   V    D       ND+  +  + +     GFNL VGG      R +   P  
Sbjct: 250 LPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIPLD 306
Query: 339 GEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKK 398
                +VP +D++   +AI+   R+ G R +R+  RM +LI   G+E FR+ VE+   ++
Sbjct: 307 A----WVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ 362
Query: 399 FEPFRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYN 451
            +  R  PE      WE + +LG H Q   G  F GLH+  GR+       L  + ++Y 
Sbjct: 363 -QLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYG 421
Query: 452 L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPL 508
              +R+T  QNII+ +I  +       AL +  +L     DP  L    +AC     C  
Sbjct: 422 SGEIRLTVEQNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQ 477
Query: 509 AITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
           AI E +      LK    V  +V L   + V +  TGCPN CA+  +A++G +G
Sbjct: 478 AIIETK---ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526

>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf Length = 584

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 135/294 (45%), Gaps = 27/294 (9%)
Query: 279 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRL 338
           LPRK+   V    D       ND+  +  + +     GFNL VGG      R +   P  
Sbjct: 250 LPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIPLD 306
Query: 339 GEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKK 398
                +VP +D++   +AI+   R+ G R +R+  RM +LI   G+E FR+ VE+   ++
Sbjct: 307 A----WVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ 362
Query: 399 FEPFRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYN 451
            +  R  PE      WE + +LG H Q   G  F GLH+  GR+       L  + ++Y 
Sbjct: 363 -QLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYG 421
Query: 452 L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPL 508
              +R+T  QNII+ +I  +       AL +  +L     DP  L    +AC     C  
Sbjct: 422 SGEIRLTVEQNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQ 477
Query: 509 AITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
           AI E +      LK    V  +V L   + V +  TGCPN CA+  +A++G +G
Sbjct: 478 AIIETK---ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526

>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase Length = 608

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 135/295 (45%), Gaps = 28/295 (9%)
Query: 279 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRL 338
           LPRK+   V    D       ND+  +  + +NG+  GFNL VGG      R E   P  
Sbjct: 267 LPRKWNPCVIGSHDLYEHPHINDLAYMPAT-KNGK-FGFNLLVGGFFS-IKRCEEAIP-- 321
Query: 339 GEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKK 398
                +V  ED++   KA++   R+ G R +R+  RM +LI   G+E FR  VE+   ++
Sbjct: 322 --LDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQ 379
Query: 399 F------EPFRQLPEWEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYN 451
                  E   Q  +WE + +LG H Q   GL F GLH+  GR+     + L  I + Y 
Sbjct: 380 VLERASSEELVQ-KDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYG 438
Query: 452 L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYV--DPLNITAM-ACPSLPLCP 507
              +R+T  QNII+ ++  +       +L    LL  RY    P+ +  + AC     C 
Sbjct: 439 SGELRLTVEQNIIIPNVENS----KIDSLLNEPLLKERYSPEPPILMKGLVACTGSQFCG 494
Query: 508 LAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
            AI E +     + + ++ +     +     V +  TGCPN C +  +A++G +G
Sbjct: 495 QAIIETKARALKVTEEVQRL-----VSVTRPVRMHWTGCPNSCGQVQVADIGFMG 544

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	574
1aop_A	497	Sirhp, sulfite reductase hemoprotein; oxidoreducta	0.0
1zj8_A	566	Probable ferredoxin-dependent nitrite reductase N;	1e-165
2akj_A	608	Ferredoxin--nitrite reductase, chloroplast; X-RAY	1e-150
3b0g_A	591	NII3, nitrite reductase; siroheme, Fe4S4 binding p	1e-140
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A* Length = 497

 Score =  526 bits (1358), Expect = 0.0
 Identities = 158/453 (34%), Positives = 240/453 (52%), Gaps = 29/453 (6%)

Query: 124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQF-GIGTLRLTTRQTFQLHGVLKKDLKTVMR 182
             ++ +LR + P G ++ + +  +D  A +    G++RLT RQTFQ HG+LKK++K V +
Sbjct: 3   PRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQ 62

Query: 183 SIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDG 242
            +       L    D+NRNVL    P   + +  A + A+ I+  L P++  Y ++W+D 
Sbjct: 63  MLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQ 122

Query: 243 EQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDI 302
           E++ T +                     EPI G  +LPRKFK  V +P  N +D+  ND+
Sbjct: 123 EKVATTDE--------------------EPILGQTYLPRKFKTTVVIPPQNDIDLHANDM 162

Query: 303 GVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQR 362
             V +++      GFNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR
Sbjct: 163 NFVAIAENGKLV-GFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQR 221

Query: 363 ENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDG 422
           + G R DRK ++ KY +   G+E F++ VE+  G KFEP R          +GW +  D 
Sbjct: 222 DWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDD 281

Query: 423 GLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTA 478
                L ++NGRI       +K  L EI + +  + RIT NQN+I+  + ++ K  I   
Sbjct: 282 NWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKI 341

Query: 479 LAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNES 538
             ++GL+    V P    +MAC S P CPLA+ EAER +P  +  I  +  K G+  +E 
Sbjct: 342 AKESGLMNA--VTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS-DEH 398

Query: 539 VVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF 571
           +V+RVTGCPNGC R  +AE+GLVG  P  Y + 
Sbjct: 399 IVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLH 431

>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A* Length = 566

 Score =  480 bits (1237), Expect = e-165
 Identities = 115/555 (20%), Positives = 203/555 (36%), Gaps = 85/555 (15%)

Query: 48  RSSVVRAVSTPVKPETE----TKTETKRSKVEIIKEQSNF--IRYPLNEEL---LTDAPN 98
                 A + P K   E           +  E +K+  N   +R  +         D+ +
Sbjct: 7   HHHHGMATARPAKARNEGQWALGHREPLNANEELKKAGNPLDVRERIENIYAKQGFDSID 66

Query: 99  VNESATQLIKFHGSYQQYNRDERGAKS----------YSFMLRTKNPCGKVSNQLYLTMD 148
             +      ++ G Y Q  +   G  +            FM+R +   G +S     T+ 
Sbjct: 67  KTD-LRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVRCDGGALSAAALRTLG 125

Query: 149 DLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAP 208
            ++ +F   T  ++ RQ  Q H +  +++  + R +      T  ACGD  R VL  P  
Sbjct: 126 QISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTEACGDCPRVVLGSPLA 185

Query: 209 LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPD 268
               D +                +    ++                              
Sbjct: 186 GESLDEVL-------------DPTWAIEEIVRRYIG------------------------ 208

Query: 269 SPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRT 328
             +P +    LPRK+K A++      V    ND+  + V+     P G +L+VGGG+   
Sbjct: 209 --KPDF--ADLPRKYKTAIS--GLQDVAHEINDVAFIGVNHPEHGP-GLDLWVGGGLSTN 261

Query: 329 HRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKF 387
                  P L +++G +VP  ++     A+    R+ G R  R  +R+K+LI  WGI KF
Sbjct: 262 -------PMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKF 314

Query: 388 RSVVEQYYGKK--FEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLRE 445
           R V+E  Y K+   +     P      H+G     +G    G+    GR++G +   + +
Sbjct: 315 REVLETEYLKRPLIDGPAPEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVAD 374

Query: 446 IIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLP 504
           ++ +     +R TP Q +++ DI  A    +   L   GL             MAC  + 
Sbjct: 375 LMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSR--PSHWRRNLMACSGIE 432

Query: 505 LCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG-- 562
            C L+  E       ++  +    E +  + +  + + + GCPN CAR  +A++G  G  
Sbjct: 433 FCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCARIQIADIGFKGQM 492

Query: 563 ------DGPNSYQVF 571
                      +QV 
Sbjct: 493 IDDGHGGSVEGFQVH 507

>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 Length = 608

 Score =  444 bits (1143), Expect = e-150
 Identities = 112/601 (18%), Positives = 207/601 (34%), Gaps = 88/601 (14%)

Query: 2   TTSFGAANTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPVKP 61
                AA     +  +  + + +  K         +  A     +      R      + 
Sbjct: 18  MKETAAAKFERQHMDSPDLGTDDDDKAM-GCQKAVSPAAETAAVSPSVDAARLEPRVEER 76

Query: 62  ETE----TKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYN 117
           +       +  +  +  E +K + + ++  + + +   A    E           + + +
Sbjct: 77  DGFWVLKEEFRSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVD-----KSKHNKDD 131

Query: 118 RDER----------GAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GTLRLTTRQT 166
            D R                FM+R K P G  +++    +  +  ++G  G   +TTRQ 
Sbjct: 132 IDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQN 191

Query: 167 FQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAA 226
           +Q+ GV+  D+  +++ +     ++L +  D  RN +  P                 I  
Sbjct: 192 WQIRGVVLPDVPEIIKGLESVGLTSLQSGMDNVRNPVGNPLA--------------GIDP 237

Query: 227 LLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVA 286
                +  + ++                              +         LPRK+   
Sbjct: 238 HEIVDTRPFTNLISQ-----------------------FVTANSRGNLSITNLPRKWNPC 274

Query: 287 VTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YV 345
           V    D       ND+  +    +NG+  GFNL VGG                  L  +V
Sbjct: 275 VIGSHDLYEHPHINDLAYMPA-TKNGKF-GFNLLVGGFFSIKR------CEEAIPLDAWV 326

Query: 346 PKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKF-----E 400
             ED++   KA++   R+ G R +R+  RM +LI   G+E FR  VE+   ++       
Sbjct: 327 SAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQVLERASS 386

Query: 401 PFRQLPEWEFKSHLGWHEQGDGGLF-CGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITP 458
                 +WE + +LG H Q   GL   GLH+  GR+     + L  I + Y +  +R+T 
Sbjct: 387 EELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTV 446

Query: 459 NQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIP 518
            QNII+ ++  +    +           P     L    +AC     C  AI E +    
Sbjct: 447 EQNIIIPNVENSKIDSLLNEPLLKERYSPEPP-ILMKGLVACTGSQFCGQAIIETKARAL 505

Query: 519 DILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG--------DGPNSYQV 570
            + + ++ +           V +  TGCPN C +  +A++G +G               V
Sbjct: 506 KVTEEVQRLVSV-----TRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADV 560

Query: 571 F 571
           F
Sbjct: 561 F 561

>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A* Length = 591

 Score =  419 bits (1079), Expect = e-140
 Identities = 114/587 (19%), Positives = 206/587 (35%), Gaps = 96/587 (16%)

Query: 24  NGLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPVKPETETKTE------------TKR 71
           +G      +  +  ++    P +  +    A     +       E               
Sbjct: 14  SGHIEGRHMFSKNAVKLHATPPSVAAPPTGAPEVAAERLEPRVEEKDGYWILKEQFRKGI 73

Query: 72  SKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQ----------LIKFHGSYQQYNRDER 121
           +  E +K +   ++  +   +   A    E   Q           +K+ G + +     R
Sbjct: 74  NPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHR-----R 128

Query: 122 GAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GTLRLTTRQTFQLHGVLKKDLKTV 180
             +   FM+R K P G  ++     +  +  ++G  G   +TTRQ +Q+ GV+  D+  +
Sbjct: 129 KNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEI 188

Query: 181 MRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWV 240
           ++ +     ++L +  D  RN +  P                 I       +  Y ++  
Sbjct: 189 LKGLAEVGLTSLQSGMDNVRNPVGNPLA--------------GIDPEEIVDTRPYTNLLS 234

Query: 241 DGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTN 300
                                       +         LPRK+   V    D       N
Sbjct: 235 QF-----------------------ITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHIN 271

Query: 301 DIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVV 359
           D+  +    ++G   GFNL VGG                  L  +VP +D++   +AI+ 
Sbjct: 272 DLAYMPA-TKDGRF-GFNLLVGGFFSAKR------CDEAIPLDAWVPADDVVPVCRAILE 323

Query: 360 TQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYY-GKKFEPFR----QLPEWEFKSHL 414
             R+ G R +R+  RM +LI   G+E FR+ VE+    ++ E          +WE + +L
Sbjct: 324 AFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYL 383

Query: 415 GWHEQGDGGLF-CGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDIRKAWK 472
           G H Q   G    GLH+  GR+       L  + ++Y +  +R+T  QNII+ +I  +  
Sbjct: 384 GVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKI 443

Query: 473 RPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVG 532
             +      +          L    +AC     C  AI E +     I + ++       
Sbjct: 444 EALLKEPVLSTFSPD--PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSL-- 499

Query: 533 LKYNESVVIRVTGCPNGCARPYMAELGLVG--------DGPNSYQVF 571
               + V +  TGCPN CA+  +A++G +G               VF
Sbjct: 500 ---TKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVF 543

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 6e-10
 Identities = 85/581 (14%), Positives = 162/581 (27%), Gaps = 192/581 (33%)

Query: 15  NPNIRIRSFNGLKPSHSLSIRTNLRAF-PVPY--------ASRSSVVRAVSTPVKPETET 65
           N N     +N  +    L +R  L    P           + ++ V   V    K + + 
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 66  KTE-------TKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNR 118
             +          S   +++     +              ++ + T       + +    
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLY------------QIDPNWTSRSDHSSNIKLRIH 228

Query: 119 DERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQ-----FGIG--TLRLTTRQ---TFQ 168
             +         +    C        L + ++ +      F +    L LTTR    T  
Sbjct: 229 SIQAELRRLLKSKPYENC-------LLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDF 280

Query: 169 LHGVLKKDLKTVMRSIIRSMGSTLG--------ACGDLNRNVLAPPAPLVRKDYLFAQKT 220
           L       +     S+  +                 DL R VL    P      + A+  
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLS--IIAESI 337

Query: 221 AENIAALLTPQSGFYYDMWVDGEQIMTA--------EPPEVVKARNDNSHGTNFPDSPEP 272
            + +A   T      +   V+ +++ T         EP E  K  +  S    FP S   
Sbjct: 338 RDGLA---TWD---NWKH-VNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPS--- 384

Query: 273 IYGTQFLPRKFKVAVTVPTDNSV------DILTNDIGVVVVSDEN-----GEPQGFNLYV 321
                           +PT   +      D++ +D+ VVV           +P+   + +
Sbjct: 385 --------------AHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 322 GGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISS 381
                    +          L    K +  YA+                           
Sbjct: 429 -------PSI---------YLELKVKLENEYALH-------------------------- 446

Query: 382 WGIEKFRSVVEQY-YGKKFEPFRQLPEWE---FKSHLGWH----EQGD-GGLFCGLHVDN 432
                 RS+V+ Y   K F+    +P +    F SH+G H    E  +   LF  + +D 
Sbjct: 447 ------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 433 GRIAGKMKK-------------TLREIIEKYNLNVRITPNQNI---ILCDIRKAWKRPIT 476
             +  K++              TL++ ++ Y     I  N      ++  I     +   
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQ-LKFY--KPYICDNDPKYERLVNAILDFLPKI-- 555

Query: 477 TALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGI 517
               +  L+  +Y D L I A+      +      EA + +
Sbjct: 556 ----EENLICSKYTDLLRI-ALMAEDEAI----FEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 6e-07
 Identities = 57/477 (11%), Positives = 125/477 (26%), Gaps = 143/477 (29%)

Query: 65  TKTETKRSKVEIIKEQSNFIR-YPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGA 123
           +K E       II  +        L   LL+      E   Q  KF     + N      
Sbjct: 47  SKEEID----HIIMSKDAVSGTLRLFWTLLSK----QEEMVQ--KFVEEVLRIN------ 90

Query: 124 KSYSFML-----RTKNPCGKVSNQLYLTMDDLADQFGIGTLRL-TTRQTFQLHGV----L 173
             Y F++       + P      ++Y+   D          RL    Q F  + V     
Sbjct: 91  --YKFLMSPIKTEQRQPSMM--TRMYIEQRD----------RLYNDNQVFAKYNVSRLQP 136

Query: 174 KKDLKTVMRSIIRSMGSTL---GACGDLNRNVLAPPAPLVRKDYLFAQKTAENI------ 224
              L+  +  +  +    +      G   +  +A    +    Y    K    I      
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSG---KTWVA--LDVCL-SYKVQCKMDFKIFWLNLK 190

Query: 225 -----AALLTPQSGFYYDM---WVDGEQIMTAEPPEVVKARNDNSH---GTNFPDS---- 269
                  +L       Y +   W       +     +   + +         + +     
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 270 -----PEPIYGTQFLPRKF----KVAVTVPT-DNSV-DILTNDIGVVVVSDENGEPQGFN 318
                 +           F    K+ +T  T    V D L+      +  D         
Sbjct: 251 LNVQNAKAW-------NAFNLSCKILLT--TRFKQVTDFLSAATTTHISLDH--HSMTL- 298

Query: 319 LYVGGGMGRTHR-LETTFPR-LGEQLGYVPKEDIL---YAVKAIVVTQRENGRRDDR--- 370
                    T   +++   + L  +   +P+E +      +  I  + R+     D    
Sbjct: 299 ---------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 371 -KYSRMKYLISSWGIEKFRSV-VEQYYGKKFEPFR---QLPE------W----------- 408
               ++  +I S  +         + +  +   F     +P       W           
Sbjct: 350 VNCDKLTTIIES-SLNVLEPAEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 409 --EF--KSHL-GWHEQGDGGLFCGLHVDNGRIAGKMKKTL-REIIEKYNLNVRITPN 459
             +    S +    ++    +   ++++  ++  + +  L R I++ YN+      +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIP-SIYLEL-KVKLENEYALHRSIVDHYNIPKTFDSD 462

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	574
4g38_A	570	SIR-HP, sirhp, sulfite reductase [NADPH] hemoprote	100.0
1aop_A	497	Sirhp, sulfite reductase hemoprotein; oxidoreducta	100.0
1zj8_A	566	Probable ferredoxin-dependent nitrite reductase N;	100.0
2akj_A	608	Ferredoxin--nitrite reductase, chloroplast; X-RAY	100.0
3b0g_A	591	NII3, nitrite reductase; siroheme, Fe4S4 binding p	100.0
3or1_B	386	Sulfite reductase beta; dissimilatory sulfite redu	100.0
3mm5_A	418	Sulfite reductase, dissimilatory-type subunit ALP;	100.0
3mm5_B	366	Sulfite reductase, dissimilatory-type subunit BET;	100.0
3or1_A	437	Sulfite reductase alpha; dissimilatory sulfite red	100.0
1zj8_A	566	Probable ferredoxin-dependent nitrite reductase N;	100.0
2akj_A	608	Ferredoxin--nitrite reductase, chloroplast; X-RAY	99.97
3b0g_A	591	NII3, nitrite reductase; siroheme, Fe4S4 binding p	99.97
1aop_A	497	Sirhp, sulfite reductase hemoprotein; oxidoreducta	99.97
4g38_A	570	SIR-HP, sirhp, sulfite reductase [NADPH] hemoprote	99.97
3or1_B	386	Sulfite reductase beta; dissimilatory sulfite redu	99.92
3mm5_A	418	Sulfite reductase, dissimilatory-type subunit ALP;	99.92
3or1_A	437	Sulfite reductase alpha; dissimilatory sulfite red	99.91
3mm5_B	366	Sulfite reductase, dissimilatory-type subunit BET;	99.91
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	97.29
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	97.18
4g9p_A	406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	95.27
4g9p_A	406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	91.25

>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*

Probab=100.00  E-value=3.9e-109  Score=920.40  Aligned_cols=480  Identities=38%  Similarity=0.657  Sum_probs=358.0

Q ss_pred             CCCCChhhhhhhccCCCccchHHHhhhc-CCCCChhHHHHhhhceeEeeccCcccCC-------ccceEEEEEEcCCccc
Q 008202           68 ETKRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERGA-------KSYSFMLRTKNPCGKV  139 (574)
Q Consensus        68 ~~k~~~~E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~k~~G~y~Q~~r~~r~~-------~~~~fmvRiripgG~l  139 (574)
                      ..|+||+|+||++||+||+++.++|.+. ...++++|++++||||+|+|+|||.|.+       +.|+||||+|+|+|.+
T Consensus        12 ~~~l~~~E~~K~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~k~~G~y~Q~~r~~~~~~~~~~~~~~~~fm~Rvr~pgG~l   91 (570)
T 4g38_A           12 EGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVI   91 (570)
T ss_dssp             ---------------------------------------------------------------------CCCEECGGGEE
T ss_pred             CCCCChHHHHhcccccchhHHHHHHHHhhcCCCCHHHHHHHhhceeeEecccccchhhhccccCcCccEEEEEecCCccc
Confidence            5689999999999999999999888765 4589999999999999999999987653       4689999999999999


Q ss_pred             cHHHHHHHHHHHHHh-CCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCCCCchhhhhH
Q 008202          140 SNQLYLTMDDLADQF-GIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFA  217 (574)
Q Consensus       140 t~~ql~~la~iA~~y-G~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~~~~~~~~d~  217 (574)
                      |++||++|++||++| |+|+++||||||||||||+++++++++++| .+.| .+.++|||++||||+||+|++...+.|+
T Consensus        92 t~~Ql~~la~iA~~y~g~G~i~lTtRqniQl~gi~~~~~~~i~~~L-~~~gl~~~~a~Gd~vRNV~~~p~p~~g~~~~d~  170 (570)
T 4g38_A           92 TTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQML-HSVGLDALATAWDMNRNVLCTSNPYESQLHAEA  170 (570)
T ss_dssp             EHHHHHHHHHHHHHHBSSCCEEECTTSCEECCSBC-----CHHHHH-HTTTCEECCTTTCCBCCCEECSSCSSGGGHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCeEEEeCCceEEEecCCHHHHHHHHHHH-HHcCCCCccccCCCccceEecCCcccCccHHHH
Confidence            999999999999999 999999999999999999999999999999 7777 5779999999999999998888888999


Q ss_pred             HHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCccc
Q 008202          218 QKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDI  297 (574)
Q Consensus       218 ~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~  297 (574)
                      .++|.+|+++|.+.+.+|+|+||+++++.+.+                    .||+||..+|||||||+|||||+||+++
T Consensus       171 ~~~a~~i~~~l~~~~~~~~e~~l~~~~~~~~~--------------------~~p~~g~~~LPrKFKiavsg~~~~~~~~  230 (570)
T 4g38_A          171 YEWAKKISEHLLPRTRAYAEIWLDQEKVATTD--------------------EEPILGQTYLPRKFKTTVVIPPQNDIDL  230 (570)
T ss_dssp             HHHHHHHHHHTCC---------------------------------------------------CBCEEEECTTBCTTCG
T ss_pred             HHHHHHHHHhhcccchhHHHHHhccchhcccc--------------------cCccccccCCCCceEEEEECCCcccccC
Confidence            99999999999999999999999987765421                    2567888899999999999999999999


Q ss_pred             ccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 008202          298 LTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKY  377 (574)
Q Consensus       298 ~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~  377 (574)
                      ++|||||+++.++ |+..||+|||||++|++|++..|+|++|+.++||++|++++++++|+.+|+++|+|.+|+++||+|
T Consensus       231 ~~~Dig~~a~~~~-~~~~Gf~v~vGGg~g~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~G~r~~r~kaRlk~  309 (570)
T 4g38_A          231 HANDMNFVAIAEN-GKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKY  309 (570)
T ss_dssp             GGSSEEEEEEESS-SSEEEEEEEECCBCCCCTTCTTCCCBCCEEEEEEEGGGHHHHHHHHHHHHHHHCC-----CCSHHH
T ss_pred             ccCcEEEEEEEeC-CceeeEEEEEccccccccCcccCCCccccccCccCHHHHHHHHHHHHHHHHHhccccchhhhHHHH
Confidence            9999999999874 556799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCH----HHHHHHHHHHHHhCCe
Q 008202          378 LISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLN  453 (574)
Q Consensus       378 li~r~G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~----~~l~~La~la~~yg~~  453 (574)
                      +|++||+++|+++|++++|.++++..+.+.....+|+||++|+||+|+|++++|+|++++    ++++.|++||++|+.+
T Consensus       310 li~~~G~e~f~~~v~~~~g~~~~~~~~~~~~~~~d~~g~~~~~dG~~~v~v~~~~Grl~~~~~~~~l~~La~iAe~~gg~  389 (570)
T 4g38_A          310 TLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGD  389 (570)
T ss_dssp             HHHHHCHHHHHHHHHHHHTCCCBCCCCCCCCBCCCCCEEEECSTTEEEEEECCGGGEECEETTEEHHHHHHHHHHHCSSE
T ss_pred             HHHhhhHHHHHHHHHHHhhcccCCCCccCcCCCccccCceecCCCcEEEEEEecCCeecCCccHHHHHHHHHHHHHhCCe
Confidence            999999999999999999999887766555567799999999999999999999999988    5999999999999988


Q ss_pred             EEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCC
Q 008202          454 VRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGL  533 (574)
Q Consensus       454 irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl  533 (574)
                      ||+|++|||+|.+|++++++++.+.|+++|+.  ...++.+++++||+|.++|++|++||+++++.|++++++.+...++
T Consensus       390 iRlT~~Qniil~gv~~e~l~~i~~~L~~~Gl~--~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~~~~~~l  467 (570)
T 4g38_A          390 FRITANQNLIIAGVPESEKAKIEKIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGV  467 (570)
T ss_dssp             EEECTTSCEEEEEEEGGGHHHHHHHHHHTTTT--CCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTTC
T ss_pred             EEECCCCcEEEecCCHHHHHHHHHHHHHcCCC--CCCCCcccCeEECCCCCcccchhHhHHHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999997  3467888899999999999999999999999999999999988777


Q ss_pred             CCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202          534 KYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       534 ~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      . |.+++||||||||+|++|+++||||+|++.+.|+||+
T Consensus       468 ~-p~~iki~vSGCpn~C~~~~~aDIGlvG~~~g~y~l~l  505 (570)
T 4g38_A          468 S-DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHL  505 (570)
T ss_dssp             T-TCCCCEEEESSTTCTTCGGGSSEEEEEEETTEEEEEE
T ss_pred             C-CCceEEEEeCCCchhhhccccceEEEEecccceEEEE
Confidence            3 3689999999999999999999999999889999997

>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*

Probab=100.00  E-value=5e-94  Score=790.44  Aligned_cols=425  Identities=38%  Similarity=0.681  Sum_probs=361.3

Q ss_pred             CccceEEEEEEcCCccccHHHHHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCc
Q 008202          123 AKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNR  200 (574)
Q Consensus       123 ~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~R  200 (574)
                      ++.|.||+|||+|+|.+|++||++|++||++|| +|++|+|||||||||||+++++++++++| .+.| .+.++|||++|
T Consensus         2 ~~~~~~m~Rvr~p~G~lt~~qlr~la~ia~~yg~~g~~~~TtRq~iql~gi~~~~~~~i~~~L-~~~gl~~~~~~Gd~~R   80 (497)
T 1aop_A            2 EPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQML-HSVGLDALATANDMNR   80 (497)
T ss_dssp             ------CEECCCGGGEEEHHHHHHHHHHHHHHBSSCCEEECTTSCEEECCBC-----CHHHHH-HHTTCCCC---CCCBC
T ss_pred             CccceEEEEEccCCcccCHHHHHHHHHHHHHhCCCCeEEEECcccEEecCCCHHHHHHHHHHH-HHcCCCCccccCCCCC
Confidence            456899999999999999999999999999999 99999999999999999999999999999 6667 66799999999


Q ss_pred             ceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCC
Q 008202          201 NVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP  280 (574)
Q Consensus       201 NV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LP  280 (574)
                      ||++||++.+..++.|+.+++.+|.++|.+.+.+|+|+|||++++.+..                    .+|.|+..+||
T Consensus        81 ni~~~p~~~~~~~~~d~~~~a~~l~~~l~~~~~~~~e~wl~~~~~~~~~--------------------~~p~~~~~~LP  140 (497)
T 1aop_A           81 NVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTD--------------------EEPILGQTYLP  140 (497)
T ss_dssp             CCEECSSCSSTTHHHHHHHHHHHHHHHTCC----------------------------------------------CCCS
T ss_pred             CcccCCcccCChhHHHHHHHHHHHHHHhhhccchhhhhhcccccccccc--------------------CCcccccCCCC
Confidence            9999998744446889999999999999999999999999998876421                    25678878999


Q ss_pred             CceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHHH
Q 008202          281 RKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVT  360 (574)
Q Consensus       281 rKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~~  360 (574)
                      |||||+|||||++|+.+.+|||||+++.++ |...||+|||||++|++|++++|+|++++.++||+++|+++++++|+++
T Consensus       141 ~Kfkiavsg~~~~~~~~~~~Dig~i~~~~~-g~~~G~~v~vGG~~g~~~~~~~~~p~~~~~~~~v~~~~~~~~~~ai~~~  219 (497)
T 1aop_A          141 RKFKTTVVIPPQNDIDLHANDMNFVAIAEN-GKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTT  219 (497)
T ss_dssp             SCBCEEEECTTBCTTCGGGSSEEEEEEEET-TEEEEEEEEECCBCCCCTTCTTCCCBCCEEEEEEEGGGHHHHHHHHHHH
T ss_pred             CcEEEEEecCCccccCcccCCeEEEEEEEC-CceeeEEEEecccccccCCcccCCCccccccCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999875 6567999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeeeecCCcEEEEEEeCCCCc---CH
Q 008202          361 QRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AG  437 (574)
Q Consensus       361 ~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl---~~  437 (574)
                      |+++|+|.+|+++||+|+|++||+++|+++|+++++.++++..+.+.+...+|+||++|+||.|+|++++|+|++   ++
T Consensus       220 ~~~~g~r~~r~~aR~~~li~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~G~~~v~v~~p~G~l~~~~~  299 (497)
T 1aop_A          220 QRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPA  299 (497)
T ss_dssp             HHHHSCSSCSTTCSHHHHHHHHCHHHHHHHHHHHHTCCCBCCCCCCCCBCCCCCEEEECSTTEEEEEECCGGGEECEETT
T ss_pred             HHHhCCccchhhHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCCCCCccccccceeEEEcCCceEEEEEECCCCcccCCCH
Confidence            999999999999999999999999999999999999888766655556778999999999999999999999999   77


Q ss_pred             H-HHHHHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhh
Q 008202          438 K-MKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERG  516 (574)
Q Consensus       438 ~-~l~~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~  516 (574)
                      + +|+.|++||++|+..||+|++|||+|.+|++++++++.+.|++.|+.. . .++.+++++||+|.++|+++++||+++
T Consensus       300 ~~~l~~ladia~~ygg~irlT~~qni~l~gv~~~~l~~l~~~L~~~Gl~~-~-~~~~~r~i~aC~G~~~C~~a~~dt~~~  377 (497)
T 1aop_A          300 RPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMN-A-VTPQRENSMACVSFPTCPLAMAEAERF  377 (497)
T ss_dssp             EEHHHHHHHHHHHCSSEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTTC-C-CCHHHHTEEECCCTTTCTTCSSCSTTT
T ss_pred             HHHHHHHHHHHHHhCCEEEEcCCCCEEEecCCHHHHHHHHHHHHHCCCCC-C-CCCceeeeecccCcccCcchhhhHHHH
Confidence            7 999999999999978999999999999999999999999999999988 3 488889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202          517 IPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       517 a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      ++.|++++++.+...++. |.+++||||||||+|++|+++||||+|+.+|.|+||+
T Consensus       378 a~~l~~~l~~~~~~~~l~-p~~~~i~vSGCpn~C~~~~~aDIGi~G~~~g~y~i~l  432 (497)
T 1aop_A          378 LPSFIDNIDNLMAKHGVS-DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHL  432 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCT-TCCCCEEEESSTTCTTCGGGSSEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHhhcCCC-CcceEEEEECCcchhhhhccCCEEEEEecCCCEEEEE
Confidence            999999999998877652 3689999999999999999999999999888899987

>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*

Probab=100.00  E-value=4.7e-93  Score=792.63  Aligned_cols=450  Identities=25%  Similarity=0.443  Sum_probs=399.2

Q ss_pred             CCCCChhhhhhhccCCC--ccchHHHhhhc-CCCCChhHHH-HhhhceeEeeccCcccCC----------ccceEEEEEE
Q 008202           68 ETKRSKVEIIKEQSNFI--RYPLNEELLTD-APNVNESATQ-LIKFHGSYQQYNRDERGA----------KSYSFMLRTK  133 (574)
Q Consensus        68 ~~k~~~~E~~K~~~~~l--~~~~~~~~~~~-~~~~~~~~~~-~~k~~G~y~Q~~r~~r~~----------~~~~fmvRir  133 (574)
                      ..|+||+|+||++|+||  ++++.+.+++. .++++++|++ ++||||+|+|++++.|++          .+++||||+|
T Consensus        31 ~~~~~~~E~~K~~~~~l~~~~~i~~~~~~~~~~~i~~~d~~~~~k~~G~y~q~~~~~~~~~~~~~~~~~~~~~~~mvRvr  110 (566)
T 1zj8_A           31 REPLNANEELKKAGNPLDVRERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVR  110 (566)
T ss_dssp             CSCCSHHHHHGGGSCGGGHHHHHHHTHHHHCGGGSCHHHHHTGGGGGTEEEEECTTCCGGGCSGGGHHHHEEEEEEEEEB
T ss_pred             CCCCChHHHHhhhcchHHHHHHHHHHHhhcCCCCCCHHHHhhhheEEEeeeecCCccccccccccccccccCceEEEEec
Confidence            56899999999999999  56666667654 5689999998 999999999999876643          2457999999


Q ss_pred             cCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCc
Q 008202          134 NPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVR  211 (574)
Q Consensus       134 ipgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~  211 (574)
                      +|+|.+|++||++|++||++||+|++++|||||||||||+++++++++++| .+.| .+.++|||++|||++||++ .|.
T Consensus       111 ~p~G~lt~~qlr~la~ia~~yg~g~i~~TtRqniql~gi~~~~l~~i~~~L-~~~gl~~~~~~G~~~Rnv~~~p~~~~~~  189 (566)
T 1zj8_A          111 CDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRL-DDVGLQTTEACGDCPRVVLGSPLAGESL  189 (566)
T ss_dssp             CGGGEECHHHHHHHHHHHHHHSTTEEEECTTSCEEEEEECGGGHHHHHHHH-HTTTCBCTTSSSSSEEEEEECTTTTTCT
T ss_pred             CCCCcCCHHHHHHHHHHHHHHCCCeEEEECCccEEEecCCHHHHHHHHHHH-HHcCCCCCCCcCCCCCCeecCcccccCc
Confidence            999999999999999999999999999999999999999999999999999 7778 4669999999999999986 899


Q ss_pred             hhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCC
Q 008202          212 KDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPT  291 (574)
Q Consensus       212 ~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~  291 (574)
                      .++.|+.+++.+|.+.|..                                      +++  |  .+||+||||+||||+
T Consensus       190 ~~~~D~~~~~~~l~~~~~~--------------------------------------~~~--~--~~LP~KfKiavsgc~  227 (566)
T 1zj8_A          190 DEVLDPTWAIEEIVRRYIG--------------------------------------KPD--F--ADLPRKYKTAISGLQ  227 (566)
T ss_dssp             TCSCCTHHHHHHHHHHHTT--------------------------------------SGG--G--SSCSSCEEEEEESSS
T ss_pred             ccccCcHHHHHHHHHHHcC--------------------------------------Ccc--c--ccCCcceEEEEeccC
Confidence            9999999999999887642                                      111  2  579999999999998


Q ss_pred             CCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcc
Q 008202          292 DNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDR  370 (574)
Q Consensus       292 ~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R  370 (574)
                      +.|  +.++||||+++.++++ ..||+|+|||++|..       |++|+.++ ||+++++++++++|+++|+++|+|+||
T Consensus       228 ~~~--~~~~Dig~i~~~~~~~-~~G~~v~vGG~~g~~-------p~~a~~l~~~v~~e~v~~~~~ai~~~~~~~G~R~~r  297 (566)
T 1zj8_A          228 DVA--HEINDVAFIGVNHPEH-GPGLDLWVGGGLSTN-------PMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLR  297 (566)
T ss_dssp             CSC--GGGSSEEEEEEEETTT-EEEEEEEECCBCSSS-------CBCCEEEEEEECGGGHHHHHHHHHHHHHHHSCCSSG
T ss_pred             Ccc--cccCcEEEEEEEecCC-CceEEEEEcccCCCC-------CcchhhhccCCCHHHHHHHHHHHHHHHHHhCccccc
Confidence            854  6899999999986533 479999999999854       99999998 899999999999999999999999999


Q ss_pred             hhhhHHHHHHHhhhhHHHHHHH-HHhCCCCCC-CCCCCcccccccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHH
Q 008202          371 KYSRMKYLISSWGIEKFRSVVE-QYYGKKFEP-FRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIE  448 (574)
Q Consensus       371 ~~aRlk~li~r~G~e~fr~~ve-~~~g~~~~~-~~~~~~~~~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~  448 (574)
                      +++||+++|++||+++|+++|+ ++++.++.+ ..+.+.+...+|.||++|++|.|+|++++|+|++++++|+.||++|+
T Consensus       298 ~~aRl~~li~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~qk~G~~~v~v~~p~G~lt~~~l~~Ladiae  377 (566)
T 1zj8_A          298 AKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMA  377 (566)
T ss_dssp             GGCSHHHHHHHHCHHHHHHHHHHHTTSSCCEECCCCCCCSSCCCCCEEEECTTSSEEEEEBCBTTEEEHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHCHHHHHHHHHHHhcccccccCCCccCccccCCCcceeeccCCcEEEEEeCCCCccCHHHHHHHHHHHH
Confidence            9999999999999999999999 788887754 23334455678999999999999999999999999999999999999


Q ss_pred             HhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHH
Q 008202          449 KYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAV  527 (574)
Q Consensus       449 ~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~  527 (574)
                      +||. .||+|++|||+|.+|++++++++.++|.+.|+....  ++.+++++||+|.++|++|++||++++..|+++|++.
T Consensus       378 ~yg~g~irlT~~qniil~~v~~~~l~~i~~~L~~~Gl~~~~--s~~~r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~  455 (566)
T 1zj8_A          378 RAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSRP--SHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERR  455 (566)
T ss_dssp             HHTCCCEEECTTSCEEEEEECHHHHHHHHHHHHHTTCBSSC--CHHHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHH
T ss_pred             HhCCCEEEECCCCcEEEecCCHHHHHHHHHHHHHcCCCCCC--CCcccccccCCCcccCccchhhHHHHHHHHHHHHHHH
Confidence            9997 799999999999999999999999999999998754  4577899999999999999999999999999999988


Q ss_pred             HHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecC--------CceEEEE
Q 008202          528 FEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP--------NSYQVFQ  572 (574)
Q Consensus       528 l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~--------g~Y~l~l  572 (574)
                      +...+...+.+++||||||||+|++|+++||||+|+..        .+|+||+
T Consensus       456 l~~~~~~~~~~~ki~vSGCpN~Ca~~~~aDIGivG~~~~~~~g~~~~gy~i~l  508 (566)
T 1zj8_A          456 LEDINSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHL  508 (566)
T ss_dssp             THHHHTTCCSCCCEEEESSTTCTTCGGGSSEEEEEEEEESSSSCEEEEEEEEE
T ss_pred             hhccccccCCCceEEEecCCccchhhhhcceeEEEEeccCCCCccceeEEEEe
Confidence            76532222467999999999999999999999999731        2699987

>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1

Probab=100.00  E-value=5.8e-91  Score=778.38  Aligned_cols=446  Identities=25%  Similarity=0.388  Sum_probs=390.6

Q ss_pred             CCCCChhhhhhhccCCCccch---HHHhhhc-CCCC-----ChhHHH-HhhhceeEeeccCcccCCccceEEEEEEcCCc
Q 008202           68 ETKRSKVEIIKEQSNFIRYPL---NEELLTD-APNV-----NESATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCG  137 (574)
Q Consensus        68 ~~k~~~~E~~K~~~~~l~~~~---~~~~~~~-~~~~-----~~~~~~-~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG  137 (574)
                      ..|+||+|+||++|+||+...   ++++++. .++|     ++++++ ++||||+|+|+.+.     .++||||+|+|+|
T Consensus        87 ~~~l~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~r~~~~-----~~~~mvRvr~PgG  161 (608)
T 2akj_A           87 RSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHRRKHH-----YGRFMMRLKLPNG  161 (608)
T ss_dssp             CSSCCHHHHHHHHSCTTHHHHTCHHHHHTTCCHHHHTTSHHHHHHHHTGGGGGTEEECHHHH-----TTCEEEECCCGGG
T ss_pred             ccCCChhhhhhhhcCCcccchhhhHHHHhhccccccccccCCHHHHHHHHhhcceeeeccCC-----CceEEEEecCCCc
Confidence            468999999999999998655   4677653 2345     899998 69999999876431     2489999999999


Q ss_pred             cccHHHHHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCchhh
Q 008202          138 KVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDY  214 (574)
Q Consensus       138 ~lt~~ql~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~~~~  214 (574)
                      .+|++||++|++||++|| +|+++||||||||||||+++++++++++| .+.| .+.++|||++|||++||++ .|..++
T Consensus       162 ~lt~~qlr~ladiA~kyg~~G~i~lTtRq~iql~gi~~e~l~~i~~~L-~~~Gl~~~~~~gd~~Rnv~~~p~~g~c~~~~  240 (608)
T 2akj_A          162 VTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGL-ESVGLTSLQSGMDNVRNPVGNPLAGIDPHEI  240 (608)
T ss_dssp             EEEHHHHHHHHHHHHTTGGGCCEEECTTSCEEEEEECGGGHHHHHHHH-HTTTCCCTTCSSSSBCCCBCCTTTTTCTTCS
T ss_pred             ccCHHHHHHHHHHHHHhCCCCeEEEecCcceEEcCCCHHHHHHHHHHH-HHcCCCCCCCcCCCCCCeEeCCCcccCcchh
Confidence            999999999999999999 79999999999999999999999999999 7777 5558999999999999986 899999


Q ss_pred             hhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCC
Q 008202          215 LFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS  294 (574)
Q Consensus       215 ~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c  294 (574)
                      .|+.+++.+|.++|.++.                                      .+.|...+||+||||+||||+++|
T Consensus       241 ~D~~~~a~~l~~~l~~~~--------------------------------------~~~~~~~~LPrKfKiavsgc~~~c  282 (608)
T 2akj_A          241 VDTRPFTNLISQFVTANS--------------------------------------RGNLSITNLPRKWNPCVIGSHDLY  282 (608)
T ss_dssp             SCCHHHHHHHHHHHTTTT--------------------------------------TCCGGGSCCSSCBCEEECCCTTCT
T ss_pred             hhHHHHHHHHHHHHhhcc--------------------------------------cCCccccccCcceEEEeccCcccc
Confidence            999999999999886421                                      011234689999999999999999


Q ss_pred             cccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhh
Q 008202          295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYS  373 (574)
Q Consensus       295 ~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~a  373 (574)
                      +.++++||||+++.++ | ..||+|||||++|+++      |+.+.++. ||+++++++++++|+++|+++|+|.+|+++
T Consensus       283 ~~~~~~Dig~i~~~~~-g-~~Gf~v~vGGg~g~~~------~~~~~~l~~~v~~eev~~~~~ai~~~~~~~G~r~~R~~a  354 (608)
T 2akj_A          283 EHPHINDLAYMPATKN-G-KFGFNLLVGGFFSIKR------CEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKC  354 (608)
T ss_dssp             TCGGGSSEEEEEEESS-S-SEEEEEEECCEECSSC------EECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGC
T ss_pred             cccccceEEEEEEEeC-C-ccEEEEEECcccCCCC------cccceecccccCHHHHHHHHHHHHHHHHHhCCcccccch
Confidence            9999999999999874 4 4799999999998753      57777775 899999999999999999999999999999


Q ss_pred             hHHHHHHHhhhhHHHHHHHHHh-CCCCCCCCCC----CcccccccCCeeeecC-CcEEEEEEeCCCCcCHHHHHHHHHHH
Q 008202          374 RMKYLISSWGIEKFRSVVEQYY-GKKFEPFRQL----PEWEFKSHLGWHEQGD-GGLFCGLHVDNGRIAGKMKKTLREII  447 (574)
Q Consensus       374 Rlk~li~r~G~e~fr~~ve~~~-g~~~~~~~~~----~~~~~~~~~G~~~q~d-G~~~v~v~vp~Grl~~~~l~~La~la  447 (574)
                      ||+|+|++||+++|+++|++++ +.++.+..+.    ..|...+|+||++|++ |.|+|++.+|+|+++++||+.||+||
T Consensus       355 Rl~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~Grlt~~qLr~LadiA  434 (608)
T 2akj_A          355 RMMWLIDELGMEAFRGEVEKRMPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIA  434 (608)
T ss_dssp             SHHHHHHHHCHHHHHHHHHTTSTTSCCCCCCSCBCSCSSCCCCCCBEEEECSSTTEEEEEECCGGGEECHHHHHHHHHHH
T ss_pred             hHHHHHHhhchHHHHHHHHHHhccCCCCcCccccccccccccccccceeecCcCCeEEEEEeCCCccCCHHHHHHHHHHH
Confidence            9999999999999999999987 7777654422    1366789999999985 99999999999999999999999999


Q ss_pred             HHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHH-CCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHH
Q 008202          448 EKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQ-AGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIR  525 (574)
Q Consensus       448 ~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~-~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~  525 (574)
                      ++||. .+|+|+||||+|.+|+++++++|+++|.. .|+...  .++.+++++||+|+++|+++++||++++..|.++++
T Consensus       435 e~yg~G~irlT~~QnIil~~v~~e~l~~l~~el~~~~~~~~~--~g~~~r~i~aC~G~~~C~~a~~Dt~~~a~~l~~~l~  512 (608)
T 2akj_A          435 DVYGSGELRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSPE--PPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQ  512 (608)
T ss_dssp             HHHSSSEEEEETTTEEEEEEEETTTHHHHTTSHHHHTTSCSS--CCTTTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHH
T ss_pred             HHhCCCeEEECCCCCeEECCCCHHHHHHHHHHHhhhcccCCC--CCccccceeeCCCCCCCCchhhhHHHHHHHHHHHHH
Confidence            99986 79999999999999999999999988765 566653  366779999999999999999999999999988887


Q ss_pred             HHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeec----CC----ceEEEE
Q 008202          526 AVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG----PN----SYQVFQ  572 (574)
Q Consensus       526 ~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~----~g----~Y~l~l  572 (574)
                      +.+   .+  |.+++||||||||+|++|+++||||+|+.    +|    .|+||+
T Consensus       513 ~~~---~l--p~k~kI~vSGCpn~Ca~~~iaDIGlvG~~~~~~~G~~~~gy~v~l  562 (608)
T 2akj_A          513 RLV---SV--TRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFV  562 (608)
T ss_dssp             HHE---EC--SSCCEEEEESSTTCTTCGGGSSEEEEEEEEECTTCCEEEEEEEEE
T ss_pred             Hhc---CC--CcceEEEEeCCCCccccccccceEEEEEeeccCCCcccceEEEEE
Confidence            653   24  46899999999999999999999999974    33    499997

>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*

Probab=100.00  E-value=4.4e-91  Score=778.29  Aligned_cols=446  Identities=25%  Similarity=0.390  Sum_probs=389.1

Q ss_pred             CCCCChhhhhhhccCCCccch---HHHhhhc-CCCC-----ChhHHH-HhhhceeEeeccCcccCCccceEEEEEEcCCc
Q 008202           68 ETKRSKVEIIKEQSNFIRYPL---NEELLTD-APNV-----NESATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCG  137 (574)
Q Consensus        68 ~~k~~~~E~~K~~~~~l~~~~---~~~~~~~-~~~~-----~~~~~~-~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG  137 (574)
                      ..|+||+|+||++|+||+...   ++++++. .++|     ++++++ ++||+|+|+|+.+.     .++||+|+|+|+|
T Consensus        70 ~~~l~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~r~k~~G~y~~~~~~-----~~~~mvRvr~PgG  144 (591)
T 3b0g_A           70 RKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQ-----YGRFMMRLKLPNG  144 (591)
T ss_dssp             CTTCCHHHHHHHHSCTTHHHHTCHHHHHTTSCHHHHTTSHHHHHHHHTGGGGGTEEECTTTS-----TTEEEEECBCGGG
T ss_pred             ccCCChhhhhhhhcCCcccchhhhHHHHhhccccccccccCCHHHHHHHhhhceeEEeccCC-----CCeEEEEecCCCc
Confidence            468999999999999998655   4677653 2345     899998 69999999876442     2589999999999


Q ss_pred             cccHHHHHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCCCCCCcceecCCCC-CCchhh
Q 008202          138 KVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDY  214 (574)
Q Consensus       138 ~lt~~ql~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~gd~~RNV~acp~~-~~~~~~  214 (574)
                      .+|++||++|++||++|| +|+++||||||||||||+++++++++++| .+.| .+.++|||++|||++||++ .|..++
T Consensus       145 ~lt~~qlr~ladia~~yg~~G~i~~TtRq~iql~gi~~~~l~~i~~~L-~~~gl~~~~~~gd~~Rnv~~~p~~g~c~~~~  223 (591)
T 3b0g_A          145 VTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGL-AEVGLTSLQSGMDNVRNPVGNPLAGIDPEEI  223 (591)
T ss_dssp             EEEHHHHHHHHHHHHHTGGGCEEEECTTSCEEEEEEEGGGHHHHHHHH-HHTTCBCTTCSSSSBCCCBCCTTTTTCTTCS
T ss_pred             eECHHHHHHHHHHHHHhCCCCeEEEeCCccEEEecCCHHHHHHHHHHH-HHcCCCCCcCccCCCCCeEeCCCcccCcchh
Confidence            999999999999999999 79999999999999999999999999999 7777 4558999999999999986 899999


Q ss_pred             hhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCCCCC
Q 008202          215 LFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS  294 (574)
Q Consensus       215 ~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c  294 (574)
                      .|+++++.+|.++|.+++.                                      +.|...+||+||||+|||||++|
T Consensus       224 ~D~~~~a~~l~~~l~~~~~--------------------------------------~~~~~~~LPrKfKiavsgc~~~c  265 (591)
T 3b0g_A          224 VDTRPYTNLLSQFITGNSR--------------------------------------GNPAVSNLPRKWNPCVVGSHDLY  265 (591)
T ss_dssp             SCCHHHHHHHHHHHHTTTT--------------------------------------CCGGGSCCSSCBCEEECCCTTCT
T ss_pred             hhHHHHHHHHHHHHhhccc--------------------------------------CCccccccCcceEEEEccCcccc
Confidence            9999999999998764210                                      11234689999999999999999


Q ss_pred             cccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHHHHHHHHHhCCCCcchhh
Q 008202          295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYS  373 (574)
Q Consensus       295 ~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~a  373 (574)
                      +.+.++||||+++.++ | ..||+|+|||++|.++      |+++.++. ||++|++++++++|+++|+++|+|.+|+++
T Consensus       266 ~~~~~~Dig~i~~~~~-g-~~Gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~~~~ai~~~~~~~G~r~~R~ka  337 (591)
T 3b0g_A          266 EHPHINDLAYMPATKD-G-RFGFNLLVGGFFSAKR------CDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKC  337 (591)
T ss_dssp             TCGGGSSEEEEEEEET-T-EEEEEEEECCEECSSC------EECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGC
T ss_pred             cccccceEEEEEEEcC-C-CceEEEEEccccCCCC------cccceeeccccCHHHHHHHHHHHHHHHHHhcccccccch
Confidence            9999999999999874 4 3699999999998652      67888874 899999999999999999999999999999


Q ss_pred             hHHHHHHHhhhhHHHHHHHHHh-CCCCCCCCCC----CcccccccCCeeeecC-CcEEEEEEeCCCCcCHHHHHHHHHHH
Q 008202          374 RMKYLISSWGIEKFRSVVEQYY-GKKFEPFRQL----PEWEFKSHLGWHEQGD-GGLFCGLHVDNGRIAGKMKKTLREII  447 (574)
Q Consensus       374 Rlk~li~r~G~e~fr~~ve~~~-g~~~~~~~~~----~~~~~~~~~G~~~q~d-G~~~v~v~vp~Grl~~~~l~~La~la  447 (574)
                      ||+|+|++||+++|+++|++++ +.++.+..+.    ..|...+|+||++|++ |.|++++++|+|+++++||+.||+||
T Consensus       338 R~~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~~qk~~g~~~v~v~~p~Grlt~~~Lr~LadiA  417 (591)
T 3b0g_A          338 RMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLA  417 (591)
T ss_dssp             SHHHHHHHHCHHHHHHHHHHTSGGGCCBCCCSCCSCCSSCCCCCCSEEEECSSTTEEEEEECCGGGEECHHHHHHHHHHH
T ss_pred             hHHHHHHhccHHHHHHHHHHHhccCcCCCCccccccccccccccccceeecCcCCeEEEEEeCCCcCCCHHHHHHHHHHH
Confidence            9999999999999999999987 6666544321    1366789999999985 99999999999999999999999999


Q ss_pred             HHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCccccccCCCCCCCccchhHHHhhHHHHHHHHHH
Q 008202          448 EKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRA  526 (574)
Q Consensus       448 ~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~  526 (574)
                      ++||. .+|+|+||||+|.+|+++++++|+++|...++...  .++.+++++||+|+++|+++++||++++..|.+++++
T Consensus       418 e~yg~g~irlT~~QnI~l~~v~~e~l~~l~~el~~~~~~~~--~g~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~  495 (591)
T 3b0g_A          418 DEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPD--PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQR  495 (591)
T ss_dssp             HHHSSSEEEECTTSCEEEEEEEGGGHHHHTTCGGGGTSCSS--CCHHHHTCEECCGGGTCTTCSSCCHHHHHHHHHHHHH
T ss_pred             HHhCCCeEEECCCCceEeCCCCHHHHHHHHHHHHhccCCCC--CCCCccceecCCCcccCcchhhhHHHHHHHHHHHHHH
Confidence            99986 79999999999999999999999988766666542  3566789999999999999999999999999888876


Q ss_pred             HHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeec----CC----ceEEEE
Q 008202          527 VFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG----PN----SYQVFQ  572 (574)
Q Consensus       527 ~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~----~g----~Y~l~l  572 (574)
                      .+   .+  |.+++||||||||+|++|+++||||+|+.    +|    .|+||+
T Consensus       496 ~~---~l--p~k~kI~iSGCpn~C~~~~~aDIG~vG~~~~~~~G~~~~gy~v~l  544 (591)
T 3b0g_A          496 QV---SL--TKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFL  544 (591)
T ss_dssp             HE---EC--CSCCCEEEESSTTCTTCGGGSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             hc---CC--CcceEEEEeCCCCcccCcccccEEEEEEeecCCCCccccceEEEE
Confidence            53   24  46899999999999999999999999974    33    499997

>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*

Probab=100.00  E-value=2.7e-40  Score=351.83  Aligned_cols=215  Identities=22%  Similarity=0.311  Sum_probs=189.6

Q ss_pred             ceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-------CCCCCCCCC
Q 008202          126 YSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-------STLGACGDL  198 (574)
Q Consensus       126 ~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-------~t~~a~gd~  198 (574)
                      +.||||++.| |.+|++||+.|++||++||+|++||||||||||+||+.+++++++++| .+.|       ++++++|+.
T Consensus        61 ~~~tvRv~~p-G~lt~~qLr~LadiA~kyg~G~irlTtrqnI~l~gi~~e~l~~l~~~L-~~~Gl~~~~~~~~~g~~G~~  138 (386)
T 3or1_B           61 KVFTVRCGAA-RLMSTSHIREACEIAKKFCNGHLRFTTRNNIEFMVDNEETLKALVADL-KTRKFAAGSFKFPIGGTGAS  138 (386)
T ss_dssp             EEEEEEECCC-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHH-TTCBCTTSCBSSCBCCCSSS
T ss_pred             cEEEEEeCCC-ceeCHHHHHHHHHHHHHhCCCeEEECCCCeEEEecCCHHHHHHHHHHH-HhcCCCccccCCCccccCCc
Confidence            5899999999 999999999999999999999999999999999999999999999999 7777       566789999


Q ss_pred             CcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCC
Q 008202          199 NRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQ  277 (574)
Q Consensus       199 ~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~  277 (574)
                      +|||++||+. +|..+..|+.+++.+|.+.|.+                                          .|...
T Consensus       139 vRni~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~------------------------------------------~~~~~  176 (386)
T 3or1_B          139 ISNIVHTQGWVYCHTPATDASGPVKAVMDELFE------------------------------------------EFTSM  176 (386)
T ss_dssp             CCCCBCCCGGGTCSSCSSCSHHHHHHHHHHTHH------------------------------------------HHSCC
T ss_pred             ccceEecCCccccchhHHHHHHHHHHHHHHHHH------------------------------------------hhhcc
Confidence            9999999985 9999999999999999887642                                          12235


Q ss_pred             CCCCceEEEEEcCCCCCcccccCCEEEEEEecC----------------------------------CC-----------
Q 008202          278 FLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE----------------------------------NG-----------  312 (574)
Q Consensus       278 ~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~----------------------------------~g-----------  312 (574)
                      .||+||||+|||||++|+.++++||||++...+                                  +|           
T Consensus       177 ~LP~K~kI~vsGCpn~C~~~~~~Dig~vg~~r~~p~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~  256 (386)
T 3or1_B          177 RLPAIVRVSLACCINMCGAVHCSDIGLVGIHRKPPMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINND  256 (386)
T ss_dssp             CSSSCCCEEEESSTTCCSSGGGSSEEEEEECCSCCCCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTT
T ss_pred             ccceeeEEeeccCcccccccccccccccccccccceechhhhcccccchhhhhhCchhhccccccccCCccccccccCCC
Confidence            799999999999999999999999999998520                                  12           


Q ss_pred             --------------------cceeEEEEEccCCCCcCCccccccccccccC-CCCh-----hHHHHHHHHHHHHHHHhCC
Q 008202          313 --------------------EPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----EDILYAVKAIVVTQRENGR  366 (574)
Q Consensus       313 --------------------~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~-----eev~~~~~ai~~~~rd~g~  366 (574)
                                          +..||.|++||+.|..    ...|++++.+. |++.     +|+.+++++++++|+++|+
T Consensus       257 ~Ci~Cg~C~~~CP~~Ai~~~~~~g~~i~vGGk~~~~----~~~~~~~~~l~~~~~~e~~~~~e~~~~i~~i~~~~~e~g~  332 (386)
T 3or1_B          257 RCMYCGNCYTMCPALPLSDGTGDGIAIMVGGKISNR----IKVPSFSKVVVAFVPNEPPRWPTMAKIVKKIVEVYAEDAR  332 (386)
T ss_dssp             TCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCCCS----SSCCBCCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCccccHHHhCcHhhCcCCCCceEEEEEccccCcc----cccccccceeecccccCCccHHHHHHHHHHHHHHHHHHCC
Confidence                                1259999999998742    12489999885 7755     6999999999999999998


Q ss_pred             CCcchhhhHHHHHHHhhhhHHHHHHH
Q 008202          367 RDDRKYSRMKYLISSWGIEKFRSVVE  392 (574)
Q Consensus       367 R~~R~~aRlk~li~r~G~e~fr~~ve  392 (574)
                          ++|||+++|+|+|+++|+++++
T Consensus       333 ----~~ER~g~~i~R~G~~~f~~~~~  354 (386)
T 3or1_B          333 ----KYERIGDWIHRIGWETFYEKTG  354 (386)
T ss_dssp             ----TTCCHHHHHHHHCHHHHHHHHC
T ss_pred             ----cCCCHHHHHHHcCHHHHHHHHC
Confidence                5899999999999999999885

>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*

Probab=100.00  E-value=1.6e-39  Score=347.27  Aligned_cols=217  Identities=18%  Similarity=0.226  Sum_probs=190.7

Q ss_pred             ccceEEEEEEcCCcc-ccHHHHHHHHHHHHHhCCCeEEcC-CCCcEEEcCCCcCCHHHHHHHHHH--HcCCCCCCCCCCC
Q 008202          124 KSYSFMLRTKNPCGK-VSNQLYLTMDDLADQFGIGTLRLT-TRQTFQLHGVLKKDLKTVMRSIIR--SMGSTLGACGDLN  199 (574)
Q Consensus       124 ~~~~fmvRiripgG~-lt~~ql~~la~iA~~yG~g~i~lT-tRQniqL~gI~~~~l~~i~~~L~~--~~g~t~~a~gd~~  199 (574)
                      ..+.||||+++|+|+ +|++||+.|++||++||+|++|+| |||||||+||+.+++++++++| .  +.|++++++|+.+
T Consensus        92 ~~~~~tvRv~~P~Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv~~e~l~~i~~eL-~~~~~Gl~~ggsG~~v  170 (418)
T 3mm5_A           92 VEHFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGTRSEYLQPCFEDL-GNLEIPFDIGGSGSDL  170 (418)
T ss_dssp             GSBCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEECHHHHHHHHHHH-HHSSSCCCBCCCSSSB
T ss_pred             cceEEEEEEeCCCCcccCHHHHHHHHHHHHHhCCCEEEEecCCCceEeCCCCHHHHHHHHHHH-hcccccCCcCCccccc
Confidence            456899999999997 999999999999999999999999 9999999999999999999999 6  8899899999999


Q ss_pred             cceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCC
Q 008202          200 RNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQF  278 (574)
Q Consensus       200 RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~  278 (574)
                      ||+++||+. +|..+..|+++++.+|.+.|...                                          +....
T Consensus       171 Rni~aC~G~~~C~~a~~Dt~~la~~L~~~l~~~------------------------------------------~~~~~  208 (418)
T 3mm5_A          171 RTPSACMGPALCEFACYDTLELCYDLTMTYQDE------------------------------------------LHRPM  208 (418)
T ss_dssp             CCCEECCGGGTCTTCSSCHHHHHHHHHHHTHHH------------------------------------------HHSCC
T ss_pred             cceEecCCcccccchhhhHHHHHHHHHHHHHHh------------------------------------------hhhcc
Confidence            999999985 99999999999999998876310                                          11246


Q ss_pred             CCCceEEEEEcCCCCCccc-ccCCEEEEEEecC-----------------------------------------------
Q 008202          279 LPRKFKVAVTVPTDNSVDI-LTNDIGVVVVSDE-----------------------------------------------  310 (574)
Q Consensus       279 LPrKfkI~isgc~~~c~~~-~~~DIG~va~~~~-----------------------------------------------  310 (574)
                      ||+||||+||||||+|+.+ .++||||+++.++                                               
T Consensus       209 LP~KfKI~iSGCpN~C~~~~~~~DIGiiG~~r~~~~iD~e~~~~~~~gc~i~~~cv~~CPt~Ai~~~~~~~~id~~~Ci~  288 (418)
T 3mm5_A          209 WPYKFKIKCAGCPNDCVASKARSDFAIIGTWKDDIKVDQEAVKEYASWMDIENEVVKLCPTGAIKWDGKELTIDNRECVR  288 (418)
T ss_dssp             SSSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHHHHHHHHTTSCHHHHTGGGCTTCCEEECSSCEEECTTTCCC
T ss_pred             CCcceEEeeeccccchhhHHHhccccccccccccccccHHHHhhhccccccCccccccCCccccccCCceeEEChhhcCc
Confidence            9999999999999999997 7999999998532                                               


Q ss_pred             -------------CCcceeEEEEEccCCCCcCCccccccccccccC-CCC----hhHHHHHHHHHHHHHHHhCCCCcchh
Q 008202          311 -------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVP----KEDILYAVKAIVVTQRENGRRDDRKY  372 (574)
Q Consensus       311 -------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~----~eev~~~~~ai~~~~rd~g~R~~R~~  372 (574)
                                   .+...||.|++||+.+..     ..|++++.+. |++    .+++++++++|+++|+++|.+    +
T Consensus       289 Cg~Ci~~CP~~~~~~~~~g~~I~vGGk~~~~-----~g~~lg~~~~pf~~~~~p~eei~~~ie~i~~~~~e~g~~----~  359 (418)
T 3mm5_A          289 CMHCINKMPKALKPGDERGATILIGGKAPFV-----EGAVIGWVAVPFVEVEKPYDEIKEILEAIWDWWDEEGKF----R  359 (418)
T ss_dssp             CCHHHHHCTTTEECCSSEEEEEEECCBCSTT-----TCCBCCEEEEEEECCCTTCHHHHHHHHHHHHHHHHHCCT----T
T ss_pred             cChhHHhCcHhhccCCCCCeEEEEeCCCccc-----ccccccceeeccccCCCCHHHHHHHHHHHHHHHHHhCCC----C
Confidence                         122369999999987421     2388998875 776    699999999999999999873    7


Q ss_pred             hhHHHHHHHhhhhHHHHHHH
Q 008202          373 SRMKYLISSWGIEKFRSVVE  392 (574)
Q Consensus       373 aRlk~li~r~G~e~fr~~ve  392 (574)
                      |||+++|+|+|+++|+++++
T Consensus       360 ER~g~~i~RiG~~~F~e~v~  379 (418)
T 3mm5_A          360 ERIGELIWRKGMREFLKVIG  379 (418)
T ss_dssp             CCHHHHHHHHCHHHHHHHTT
T ss_pred             CcHHHHHHHcCHHHHHHHHC
Confidence            99999999999999998874

>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*

Probab=100.00  E-value=2.6e-39  Score=342.53  Aligned_cols=228  Identities=18%  Similarity=0.262  Sum_probs=196.6

Q ss_pred             ceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHc-
Q 008202          110 HGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSM-  188 (574)
Q Consensus       110 ~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~-  188 (574)
                      -|++.|.+..    .++.||||+++|+ .+|++||+.|++||++||+|++||||||||||+||+.+++++++++| .+. 
T Consensus        38 ~Gv~~~~~e~----gd~~~~vRv~~p~-~lt~~qlr~ladiA~kyg~G~lrlTtrqni~l~gv~~~~l~~l~~~L-~~~~  111 (366)
T 3mm5_B           38 PGVIKRVAES----GDVIYVVRFGTPR-LLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEV-QERV  111 (366)
T ss_dssp             TTEEEEEETT----SCEEEEEEECCCS-EEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESCGGGHHHHHHHH-HHHH
T ss_pred             CCEEEeeccC----CCceEEEEECCcc-ccCHHHHHHHHHHHHHhCCCeEEEcCCCeEEEecCCHHHHHHHHHHH-HHhc
Confidence            3777776421    1368999999999 99999999999999999999999999999999999999999999999 666 


Q ss_pred             CCCCCCC-CC-----CCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCC
Q 008202          189 GSTLGAC-GD-----LNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNS  261 (574)
Q Consensus       189 g~t~~a~-gd-----~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~  261 (574)
                      |++.+++ |+     .+|||++||+. +|..+..|+++++.+|.+.|.+.                              
T Consensus       112 Gl~~g~~~G~~~~~~~~rni~aC~g~~~C~~a~~Dt~~~a~~l~~~l~~~------------------------------  161 (366)
T 3mm5_B          112 GFPCGGTWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEY------------------------------  161 (366)
T ss_dssp             CCCBCCCEETTTTEECCCCCBCCCHHHHCSSCSSCSHHHHHHHHHHTHHH------------------------------
T ss_pred             CCCcccccCCcccccceeeeecCCCccccchHHHHHHHHHHHHHHHHHHh------------------------------
Confidence            9888888 99     99999999985 99999999999999998887421                              


Q ss_pred             CCCCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec--------------------------------
Q 008202          262 HGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD--------------------------------  309 (574)
Q Consensus       262 ~~~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~--------------------------------  309 (574)
                                  |....||+||||+||||+++|+.+..+||||++...                                
T Consensus       162 ------------~~~~~LP~k~kI~vsgC~~~C~~~~~~Dig~~g~~r~~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~  229 (366)
T 3mm5_B          162 ------------FTDHKLPAMCRISLACCANMCGAVHASDIAIVGIHRTPPIPNDEAIRKTCEIPSTVAACPTGALKPDM  229 (366)
T ss_dssp             ------------HHSCCBSSCCCEEEESSTTCSSSGGGSSEEEEEECCSCCCCCHHHHHHHCCHHHHHHTCTTCCEEEET
T ss_pred             ------------hccccccccceeccccCccccccccccccccccccccceEEcchhccccccccchhccCCccceEecC
Confidence                        223579999999999999999999999999999841                                


Q ss_pred             ---------------------------CCCcceeEEEEEccCCCCcCCccccccccccccC-CCCh-----hHHHHHHHH
Q 008202          310 ---------------------------ENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----EDILYAVKA  356 (574)
Q Consensus       310 ---------------------------~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~-----eev~~~~~a  356 (574)
                                                 ..+...|+.+++||+.|..    ...|++++.+. |++.     +|+++++++
T Consensus       230 ~~~~~~id~~~C~~Cg~C~~~CP~~Ai~~~~~~g~~i~vGgk~~~~----~~~~~lg~~~~~~~~~~~p~~~ev~~~v~~  305 (366)
T 3mm5_B          230 KNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAIMVGGKLSEA----RRMPELSKVVVPWVPNEPPRWPTLVKYVKQ  305 (366)
T ss_dssp             TTTEEEECGGGCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCSCT----TSCCBCCEEEEEEEECCTTTCHHHHHHHHH
T ss_pred             CCCeEEEehhhCCCcchHHHhCCHhhcccccCCceEEEEcCccccc----cccCcccchhhccccCCCcchHHHHHHHHH
Confidence                                       0122469999999998841    12389999885 7754     899999999


Q ss_pred             HHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHH
Q 008202          357 IVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ  393 (574)
Q Consensus       357 i~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~  393 (574)
                      ++++|+++|+    ++|||+++|+|+|+++|+++++.
T Consensus       306 i~~~y~~~g~----~~eR~~~~i~r~G~~~f~~~~~~  338 (366)
T 3mm5_B          306 ILEAWAANAN----KHERLIEWVDRIGWERFFELTGL  338 (366)
T ss_dssp             HHHHHHHHCC----TTCCHHHHHHHHCHHHHHHHHTC
T ss_pred             HHHHHHHhCC----ccccHHHHHHHhCHHHHHHHHCC
Confidence            9999999996    57999999999999999999863

>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*

Probab=100.00  E-value=2.7e-38  Score=337.93  Aligned_cols=218  Identities=16%  Similarity=0.187  Sum_probs=190.4

Q ss_pred             ccceEEEEEEcCCcc-ccHHHHHHHHHHHHHhCCCeEEcCC-CCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCCCcc
Q 008202          124 KSYSFMLRTKNPCGK-VSNQLYLTMDDLADQFGIGTLRLTT-RQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRN  201 (574)
Q Consensus       124 ~~~~fmvRiripgG~-lt~~ql~~la~iA~~yG~g~i~lTt-RQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~~RN  201 (574)
                      ..+.||||+++|+|+ +|++||+.|++||++||+|++|+|| ||||||+||+.+++++++++|..++|++++++|+.+||
T Consensus        94 v~~~~tVRV~~P~Gr~lTaeqLR~LadIAekyG~G~irlTt~rqNI~L~gi~~e~le~l~~eL~~~~Gl~~ggsG~~vRn  173 (437)
T 3or1_A           94 VAHFHTVRLAQPAAKYYTAEYLEAICDVWDLRGSGLTNMHGSTGDIVLLGTQTPQLEEIFFEMTHNLNTDLGGSGSNLRT  173 (437)
T ss_dssp             GSBCCEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEECCCGGGHHHHHHHHHHHSCCCBCCCSSSBCC
T ss_pred             cceEEEEEEeCCCCCccCHHHHHHHHHHHHHhCCCEEEEcCccceEEEecCCHHHHHHHHHHHHhhcCcCccccCCccee
Confidence            456899999999997 9999999999999999999999998 59999999999999999999943889888999999999


Q ss_pred             eecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCCCCC
Q 008202          202 VLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP  280 (574)
Q Consensus       202 V~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LP  280 (574)
                      |++||+. +|..+..|+++++.+|.+.|...                                          +....||
T Consensus       174 ivaC~G~~~C~~a~~DT~~la~~L~~~l~~~------------------------------------------~~~~~LP  211 (437)
T 3or1_A          174 PESCLGISRCEFACYDTQLMCYQLTQDYQDE------------------------------------------LHRPAFP  211 (437)
T ss_dssp             CEECCGGGSCSSCCSCHHHHHHHHHHHTHHH------------------------------------------HHSCCSS
T ss_pred             eeccccccccCccccccchhhhhhHhhhhhc------------------------------------------cccccCC
Confidence            9999985 99999999999999999876420                                          1124699


Q ss_pred             CceEEEEEcCCCCCccc-ccCCEEEEEEecC-------------------------------------------------
Q 008202          281 RKFKVAVTVPTDNSVDI-LTNDIGVVVVSDE-------------------------------------------------  310 (574)
Q Consensus       281 rKfkI~isgc~~~c~~~-~~~DIG~va~~~~-------------------------------------------------  310 (574)
                      +||||+||||||+|+.+ .++||||+++.++                                                 
T Consensus       212 ~KfKI~iSGCpN~C~~~v~~aDIGiiG~~r~~i~id~~~v~~~~~~e~~~~~~a~~g~~~~~~di~~~vv~~CPt~ai~~  291 (437)
T 3or1_A          212 YKFKFKFDGCPNGCVASMARSDFAVIGTWKDDIKIDQEAVKAYVGGEFKPNAGAHAGRDWGKFDIEAEVVGLCPTGCMTY  291 (437)
T ss_dssp             SCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHHHHHHHHHTSSCGGGGTTTTSCCCSCCHHHHTTTTCTTCCEEE
T ss_pred             ceeeEeeccccccccchhhhccccccccccCCCccCHHHHHHHhhcCCCCcccccccCcCcccccchhhhccCcHHheee
Confidence            99999999999999998 6999999999632                                                 


Q ss_pred             ---------------------------CCcceeEEEEEccCCCCcCCccccccccccccC-CCC----hhHHHHHHHHHH
Q 008202          311 ---------------------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVP----KEDILYAVKAIV  358 (574)
Q Consensus       311 ---------------------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~----~eev~~~~~ai~  358 (574)
                                                 .+...||.|+|||+.+..     ..|++++.+. |++    .+++.+++++|+
T Consensus       292 ~~~~l~Id~~~C~~Cg~Ci~~CP~al~~~~~~G~~ilvGgk~~i~-----~g~~l~~~~~pf~~~~~p~~ei~~~i~~i~  366 (437)
T 3or1_A          292 ESGTLSIDNKNCTRCMHCINTMPRALKIGDERGASILVGAKAPVL-----DGAQMGSLLIPFIAAEEPFDEVKEVIENIW  366 (437)
T ss_dssp             ETTEEEECGGGCCCCSHHHHHCTTTEECCSSEEEEEEECCBCSTT-----TCCBCCEEEEEEECCCTTCHHHHHHHHHHH
T ss_pred             cCCEEEEccccCCchhhhHhhCcHhhccCCCCceEEEEeCCCCcc-----cCCccceeeeecccCCCCHHHHHHHHHHHH
Confidence                                       112479999999988632     2388999875 766    799999999999


Q ss_pred             HHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHH
Q 008202          359 VTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE  392 (574)
Q Consensus       359 ~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve  392 (574)
                      ++|.++|.    ++|||+++|+|+|+++|++.++
T Consensus       367 ~~~~e~gk----~~ER~ge~i~R~G~~~f~e~~~  396 (437)
T 3or1_A          367 EWWMEEGK----NRERLGETMKRVGFQKLLEVTG  396 (437)
T ss_dssp             HHHHHHSC----TTCCHHHHHHHHCHHHHHHHTT
T ss_pred             HHHHHcCC----CCccHHHHHHHcCHHHHHHHHC
Confidence            99999997    5799999999999999987763

>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*

Probab=100.00  E-value=6.7e-34  Score=316.70  Aligned_cols=220  Identities=17%  Similarity=0.239  Sum_probs=188.7

Q ss_pred             hhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHH
Q 008202          108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRS  187 (574)
Q Consensus       108 k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~  187 (574)
                      .+.|++.|++        +.|+||+++|+|++|++|++.|++||++||.|.+|+|++|||+|.||+.++++++++.| .+
T Consensus       341 ~~~G~~~qk~--------G~~~v~v~~p~G~lt~~~l~~Ladiae~yg~g~irlT~~qniil~~v~~~~l~~i~~~L-~~  411 (566)
T 1zj8_A          341 DHVGVQRLKN--------GLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGL-DA  411 (566)
T ss_dssp             CCCEEEECTT--------SSEEEEEBCBTTEEEHHHHHHHHHHHHHHTCCCEEECTTSCEEEEEECHHHHHHHHHHH-HH
T ss_pred             CCcceeeccC--------CcEEEEEeCCCCccCHHHHHHHHHHHHHhCCCEEEECCCCcEEEecCCHHHHHHHHHHH-HH
Confidence            4689999874        47999999999999999999999999999999999999999999999999999999999 88


Q ss_pred             cCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCC
Q 008202          188 MGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF  266 (574)
Q Consensus       188 ~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~  266 (574)
                      .|+..+..+ ..||+++|++ ++|..++.|++.++..|.+.|...   +++                             
T Consensus       412 ~Gl~~~~s~-~~r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~---l~~-----------------------------  458 (566)
T 1zj8_A          412 LGLQSRPSH-WRRNLMACSGIEFCKLSFAETRVRAQHLVPELERR---LED-----------------------------  458 (566)
T ss_dssp             TTCBSSCCH-HHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHH---THH-----------------------------
T ss_pred             cCCCCCCCC-cccccccCCCcccCccchhhHHHHHHHHHHHHHHH---hhc-----------------------------
Confidence            887776655 7799999998 599999999988888877765310   000                             


Q ss_pred             CCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecC--CC-cceeEEEEEccCCCCcCCccccccccccccC
Q 008202          267 PDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE--NG-EPQGFNLYVGGGMGRTHRLETTFPRLGEQLG  343 (574)
Q Consensus       267 ~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~--~g-~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~  343 (574)
                            .  ...+|.||||+||||||+|+.+.++||||++....  +| ...||+||+||+.|..       |++++.+.
T Consensus       459 ------~--~~~~~~~~ki~vSGCpN~Ca~~~~aDIGivG~~~~~~~g~~~~gy~i~lGG~~g~~-------~~~g~~l~  523 (566)
T 1zj8_A          459 ------I--NSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLD-------AGFGRKLR  523 (566)
T ss_dssp             ------H--HTTCCSCCCEEEESSTTCTTCGGGSSEEEEEEEEESSSSCEEEEEEEEESCBCSTT-------CBCCEECT
T ss_pred             ------c--ccccCCCceEEEecCCccchhhhhcceeEEEEeccCCCCccceeEEEEeCCCCCCC-------Cccccccc
Confidence                  0  02478899999999999999999999999998642  12 2469999999998753       88998774


Q ss_pred             --CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHH
Q 008202          344 --YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFR  388 (574)
Q Consensus       344 --~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr  388 (574)
                        .|+.++++++++++++.|++++.    +.|||.+|++|+|+++|+
T Consensus       524 ~~~v~~eei~~~l~~l~~~y~~~~~----~~Erf~~~i~R~G~~~~~  566 (566)
T 1zj8_A          524 QHKVTSDELGDYIDRVVRNFVKHRS----EGERFAQWVIRAEEDDLR  566 (566)
T ss_dssp             TCCEETTTHHHHHHHHHHHHHHSCC----TTCCHHHHHHHSCGGGGC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhCC----CCCCHHHHHHhcCHHhcC
Confidence              48999999999999999999876    479999999999999874

>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1

Probab=99.97  E-value=1.5e-32  Score=307.08  Aligned_cols=196  Identities=19%  Similarity=0.284  Sum_probs=172.1

Q ss_pred             HHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202          105 QLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI  184 (574)
Q Consensus       105 ~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L  184 (574)
                      ...+|.|+|.|++.       +.||||+++|+|++|++|++.|++||++||.|.+|+|+||||+|+||+.++++++++++
T Consensus       395 ~~~~~~Gv~~qk~~-------G~~~v~v~vp~Grlt~~qLr~LadiAe~yg~G~irlT~~QnIil~~v~~e~l~~l~~el  467 (608)
T 2akj_A          395 ERREYLGVHPQKQQ-------GLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNEP  467 (608)
T ss_dssp             CCCCCBEEEECSST-------TEEEEEECCGGGEECHHHHHHHHHHHHHHSSSEEEEETTTEEEEEEEETTTHHHHTTSH
T ss_pred             ccccccceeecCcC-------CeEEEEEeCCCccCCHHHHHHHHHHHHHhCCCeEEECCCCCeEECCCCHHHHHHHHHHH
Confidence            45788999999864       48999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCC
Q 008202          185 IRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHG  263 (574)
Q Consensus       185 ~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~  263 (574)
                      ....+++.+ +|+.+||+++||+ ++|..++.|++.++..|.+.|..                                 
T Consensus       468 ~~~~~~~~~-~g~~~r~i~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~---------------------------------  513 (608)
T 2akj_A          468 LLKERYSPE-PPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQR---------------------------------  513 (608)
T ss_dssp             HHHTTSCSS-CCTTTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHHH---------------------------------
T ss_pred             hhhcccCCC-CCccccceeeCCCCCCCCchhhhHHHHHHHHHHHHHH---------------------------------
Confidence            333566553 5889999999998 59999999999999999887631                                 


Q ss_pred             CCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec--CCCc-ceeEEEEEccCCCCcCCcccccccccc
Q 008202          264 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD--ENGE-PQGFNLYVGGGMGRTHRLETTFPRLGE  340 (574)
Q Consensus       264 ~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~--~~g~-~~Gf~v~vGGg~G~~~~~~~t~p~la~  340 (574)
                                  ...||+||||+||||||+|+.+.++||||++...  .+|+ ..||+||+||+.|..       |++++
T Consensus       514 ------------~~~lp~k~kI~vSGCpn~Ca~~~iaDIGlvG~~~~~~~G~~~~gy~v~lGG~~g~~-------~rlg~  574 (608)
T 2akj_A          514 ------------LVSVTRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSD-------SHLGD  574 (608)
T ss_dssp             ------------HEECSSCCEEEEESSTTCTTCGGGSSEEEEEEEEECTTCCEEEEEEEEECCBCSTT-------CBCCE
T ss_pred             ------------hcCCCcceEEEEeCCCCccccccccceEEEEEeeccCCCcccceEEEEECCcCCCC-------Cchhh
Confidence                        0247999999999999999999999999999863  2343 479999999998854       89999


Q ss_pred             ccC-CCChhHHHHHHHHHHHH
Q 008202          341 QLG-YVPKEDILYAVKAIVVT  360 (574)
Q Consensus       341 ~l~-~v~~eev~~~~~ai~~~  360 (574)
                      .++ +|+++++++++++++..
T Consensus       575 ~l~~~v~~eev~~~l~~ll~~  595 (608)
T 2akj_A          575 IYKKAVPCKDLVPVVAEILIN  595 (608)
T ss_dssp             EEEEEEETTTHHHHHHHHHHH
T ss_pred             HhhcCCCHHHHHHHHHHHHHH
Confidence            997 89999999999999973

>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*

Probab=99.97  E-value=6.5e-33  Score=309.49  Aligned_cols=194  Identities=19%  Similarity=0.284  Sum_probs=171.0

Q ss_pred             HHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202          105 QLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI  184 (574)
Q Consensus       105 ~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L  184 (574)
                      ...++.|+|.|++.       +.||||+++|+|++|++|++.|++||++||.|.+|+|+||||+|+||+.++++++++++
T Consensus       378 ~~~~~~G~~~qk~~-------g~~~v~v~~p~Grlt~~~Lr~LadiAe~yg~g~irlT~~QnI~l~~v~~e~l~~l~~el  450 (591)
T 3b0g_A          378 ERRDYLGVHPQKQE-------GYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEP  450 (591)
T ss_dssp             CCCCCSEEEECSST-------TEEEEEECCGGGEECHHHHHHHHHHHHHHSSSEEEECTTSCEEEEEEEGGGHHHHTTCG
T ss_pred             ccccccceeecCcC-------CeEEEEEeCCCcCCCHHHHHHHHHHHHHhCCCeEEECCCCceEeCCCCHHHHHHHHHHH
Confidence            35678999999864       48999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCC
Q 008202          185 IRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHG  263 (574)
Q Consensus       185 ~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~  263 (574)
                       ...++..+ +|+.+|||++||+ ++|..++.|+++++..|.+.|..                                 
T Consensus       451 -~~~~~~~~-~g~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~---------------------------------  495 (591)
T 3b0g_A          451 -VLSTFSPD-PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQR---------------------------------  495 (591)
T ss_dssp             -GGGTSCSS-CCHHHHTCEECCGGGTCTTCSSCCHHHHHHHHHHHHH---------------------------------
T ss_pred             -HhccCCCC-CCCCccceecCCCcccCcchhhhHHHHHHHHHHHHHH---------------------------------
Confidence             45565543 6888999999998 59999999999999999887631                                 


Q ss_pred             CCCCCCCCCcccCCCCCCceEEEEEcCCCCCcccccCCEEEEEEec--CCCc-ceeEEEEEccCCCCcCCcccccccccc
Q 008202          264 TNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD--ENGE-PQGFNLYVGGGMGRTHRLETTFPRLGE  340 (574)
Q Consensus       264 ~~~~~~~e~~yg~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~--~~g~-~~Gf~v~vGGg~G~~~~~~~t~p~la~  340 (574)
                                  ...||+||||+||||||+|+.+.++||||++...  .+|+ ..||+||+||+.|..       |++++
T Consensus       496 ------------~~~lp~k~kI~iSGCpn~C~~~~~aDIG~vG~~~~~~~G~~~~gy~v~lGG~~g~~-------~rlg~  556 (591)
T 3b0g_A          496 ------------QVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSD-------SHLGE  556 (591)
T ss_dssp             ------------HEECCSCCCEEEESSTTCTTCGGGSSEEEEEEEEECTTSCEEEEEEEEECCBCSSS-------CBCCE
T ss_pred             ------------hcCCCcceEEEEeCCCCcccCcccccEEEEEEeecCCCCccccceEEEECCcCCCC-------Cchhh
Confidence                        0247999999999999999999999999999863  2343 479999999999854       89999


Q ss_pred             ccC-CCChhHHHHHHHHHHH
Q 008202          341 QLG-YVPKEDILYAVKAIVV  359 (574)
Q Consensus       341 ~l~-~v~~eev~~~~~ai~~  359 (574)
                      .++ +|+++|+++++++++.
T Consensus       557 ~l~~~v~~eev~~~i~~ll~  576 (591)
T 3b0g_A          557 VYKKAVPCDDLVPLVVDLLV  576 (591)
T ss_dssp             EEEEEEEGGGHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHH
Confidence            997 8999999999999986

>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*

Probab=99.97  E-value=9.8e-33  Score=303.34  Aligned_cols=211  Identities=15%  Similarity=0.160  Sum_probs=183.1

Q ss_pred             hhceeEeeccCcccCCccceEEEEEEcCCccc---cHH-HHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHH
Q 008202          108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKV---SNQ-LYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRS  183 (574)
Q Consensus       108 k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~l---t~~-ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~  183 (574)
                      .+.|+++|++        +.|+||+++|+|++   +++ |++.|++||++|| |.||+|++|||+|.||+.++++++++.
T Consensus       271 ~~~G~~~q~~--------G~~~v~v~~p~G~l~~~~~~~~l~~ladia~~yg-g~irlT~~qni~l~gv~~~~l~~l~~~  341 (497)
T 1aop_A          271 DRIGWVKGID--------DNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK-GDFRITANQNLIIAGVPESEKAKIEKI  341 (497)
T ss_dssp             CCCEEEECST--------TEEEEEECCGGGEECEETTEEHHHHHHHHHHHCS-SEEEECTTSCEEEEEEEGGGHHHHHHH
T ss_pred             cceeEEEcCC--------ceEEEEEECCCCcccCCCHHHHHHHHHHHHHHhC-CEEEEcCCCCEEEecCCHHHHHHHHHH
Confidence            3678888864        58999999999999   888 9999999999998 999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCC
Q 008202          184 IIRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSH  262 (574)
Q Consensus       184 L~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~  262 (574)
                      | ++.|+.. +.++.+||+++||+ ++|..+..|+++++..|.+.|...                               
T Consensus       342 L-~~~Gl~~-~~~~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~-------------------------------  388 (497)
T 1aop_A          342 A-KESGLMN-AVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNL-------------------------------  388 (497)
T ss_dssp             H-HHTTTTC-CCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHH-------------------------------
T ss_pred             H-HHCCCCC-CCCCceeeeecccCcccCcchhhhHHHHHHHHHHHHHHH-------------------------------
Confidence            9 8888666 55778899999998 599999999998777776655210                               


Q ss_pred             CCCCCCCCCCcccCCCC-CCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccc
Q 008202          263 GTNFPDSPEPIYGTQFL-PRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQ  341 (574)
Q Consensus       263 ~~~~~~~~e~~yg~~~L-PrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~  341 (574)
                                 +....| |.||||+||||||+|+.+..+||||++..+  |   +|+|++||..+ .       |++++.
T Consensus       389 -----------~~~~~l~p~~~~i~vSGCpn~C~~~~~aDIGi~G~~~--g---~y~i~lGG~~~-~-------~~~g~~  444 (497)
T 1aop_A          389 -----------MAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAP--G---RYNLHLGGNRI-G-------TRIPRM  444 (497)
T ss_dssp             -----------HHHTTCTTCCCCEEEESSTTCTTCGGGSSEEEEEEET--T---EEEEEECCCTT-S-------CSCCEE
T ss_pred             -----------HhhcCCCCcceEEEEECCcchhhhhccCCEEEEEecC--C---CEEEEECCCCC-C-------cchhhh
Confidence                       001234 899999999999999999999999999864  2   69999999875 2       688888


Q ss_pred             cC-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHH
Q 008202          342 LG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFR  388 (574)
Q Consensus       342 l~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr  388 (574)
                      +. +|+.++++++++++++.|++++.    .+|||.++++|+|+++|.
T Consensus       445 ~~~~v~~~ei~~~l~~l~~~y~~~~~----~~Erf~~~i~R~G~~~~~  488 (497)
T 1aop_A          445 YKENITEPEILASLDELIGRWAKERE----AGEGFGDFTVRAGIIRPV  488 (497)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHHHHCC----TTCCHHHHHHHTTSSCCC
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHhCC----CCCcHHHHHHHcCcHHhh
Confidence            85 78999999999999999999876    479999999999999886

>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*

Probab=99.97  E-value=9.1e-32  Score=299.12  Aligned_cols=207  Identities=14%  Similarity=0.158  Sum_probs=180.8

Q ss_pred             hceeEeeccCcccCCccceEEEEEEcCCccccH----HHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHH
Q 008202          109 FHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSN----QLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI  184 (574)
Q Consensus       109 ~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~----~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L  184 (574)
                      +.|+++|.+        |.|.|++++|+|++++    +|++.|++||++|| |.||||++|||+|.||+.++++++++.|
T Consensus       345 ~~g~~~~~d--------G~~~v~v~~~~Grl~~~~~~~~l~~La~iAe~~g-g~iRlT~~Qniil~gv~~e~l~~i~~~L  415 (570)
T 4g38_A          345 RIGWVKGID--------DNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK-GDFRITANQNLIIAGVPESEKAKIEKIA  415 (570)
T ss_dssp             CCEEEECST--------TEEEEEECCGGGEECEETTEEHHHHHHHHHHHCS-SEEEECTTSCEEEEEEEGGGHHHHHHHH
T ss_pred             ccCceecCC--------CcEEEEEEecCCeecCCccHHHHHHHHHHHHHhC-CeEEECCCCcEEEecCCHHHHHHHHHHH
Confidence            568888754        6899999999999998    69999999999998 9999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCC
Q 008202          185 IRSMGSTLGACGDLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHG  263 (574)
Q Consensus       185 ~~~~g~t~~a~gd~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~  263 (574)
                       +++|+. ++.++..||+++||+ ++|..+..|++.++..|.+.|...                                
T Consensus       416 -~~~Gl~-~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~--------------------------------  461 (570)
T 4g38_A          416 -KESGLM-NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNL--------------------------------  461 (570)
T ss_dssp             -HHTTTT-CCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHH--------------------------------
T ss_pred             -HHcCCC-CCCCCcccCeEECCCCCcccchhHhHHHHHHHHHHHHHHH--------------------------------
Confidence             888876 677788999999998 599999999998877777665310                                


Q ss_pred             CCCCCCCCCcccCCCC-CCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCcccccccccccc
Q 008202          264 TNFPDSPEPIYGTQFL-PRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL  342 (574)
Q Consensus       264 ~~~~~~~e~~yg~~~L-PrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l  342 (574)
                                +....| |.||||+||||||+|+.+.++||||++...     .+|+||+||+.|.        |++++.+
T Consensus       462 ----------~~~~~l~p~~iki~vSGCpn~C~~~~~aDIGlvG~~~-----g~y~l~lGG~~~~--------~r~g~~~  518 (570)
T 4g38_A          462 ----------MAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAP-----GRYNLHLGGNRIG--------TRIPRMY  518 (570)
T ss_dssp             ----------HHHTTCTTCCCCEEEESSTTCTTCGGGSSEEEEEEET-----TEEEEEECCCTTS--------CSCCEEE
T ss_pred             ----------HhhcCCCCCceEEEEeCCCchhhhccccceEEEEecc-----cceEEEECCcCCC--------cccchhh
Confidence                      001235 899999999999999999999999999754     3799999998762        7889888


Q ss_pred             C-CCChhHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhh
Q 008202          343 G-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE  385 (574)
Q Consensus       343 ~-~v~~eev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e  385 (574)
                      . .|++++++++++.+++.|++++.    .+|||.+|++|+|+.
T Consensus       519 ~~~v~~~ei~~~l~~ll~~y~~~r~----~~E~f~~~~~R~G~~  558 (570)
T 4g38_A          519 KENITEPEILASLDELIGRWAKERE----AGEGFGDFTVRAGII  558 (570)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHHCC----TTCCHHHHHHHTTSS
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhCC----CCCcHHHHHHhcCCc
Confidence            6 79999999999999999999876    479999999999975

>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*

Probab=99.92  E-value=1.5e-25  Score=238.48  Aligned_cols=141  Identities=16%  Similarity=0.198  Sum_probs=128.3

Q ss_pred             cCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCC------CCCCC
Q 008202          420 GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLP------RYVDP  492 (574)
Q Consensus       420 ~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~------~~~~~  492 (574)
                      +++.|+|++.+| |+++++||+.|++||++||. .+|||++|||+|.+|+++++++|.++|.+.||...      ...+.
T Consensus        59 g~~~~tvRv~~p-G~lt~~qLr~LadiA~kyg~G~irlTtrqnI~l~gi~~e~l~~l~~~L~~~Gl~~~~~~~~~g~~G~  137 (386)
T 3or1_B           59 GDKVFTVRCGAA-RLMSTSHIREACEIAKKFCNGHLRFTTRNNIEFMVDNEETLKALVADLKTRKFAAGSFKFPIGGTGA  137 (386)
T ss_dssp             SCEEEEEEECCC-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHHTTCBCTTSCBSSCBCCCSS
T ss_pred             CCcEEEEEeCCC-ceeCHHHHHHHHHHHHHhCCCeEEECCCCeEEEecCCHHHHHHHHHHHHhcCCCccccCCCccccCC
Confidence            356789999999 99999999999999999997 79999999999999999999999999999997432      12456


Q ss_pred             CccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEee
Q 008202          493 LNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD  563 (574)
Q Consensus       493 ~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~  563 (574)
                      .+|++++|+|..+|+++++||..++.+|.++|.+.+....||  .||+|+||||||+|++++++||||+|.
T Consensus       138 ~vRni~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP--~K~kI~vsGCpn~C~~~~~~Dig~vg~  206 (386)
T 3or1_B          138 SISNIVHTQGWVYCHTPATDASGPVKAVMDELFEEFTSMRLP--AIVRVSLACCINMCGAVHCSDIGLVGI  206 (386)
T ss_dssp             SCCCCBCCCGGGTCSSCSSCSHHHHHHHHHHTHHHHSCCCSS--SCCCEEEESSTTCCSSGGGSSEEEEEE
T ss_pred             cccceEecCCccccchhHHHHHHHHHHHHHHHHHhhhccccc--eeeEEeeccCccccccccccccccccc
Confidence            779999999999999999999999999999998888776665  689999999999999999999999996

>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*

Probab=99.92  E-value=1.9e-25  Score=238.80  Aligned_cols=140  Identities=17%  Similarity=0.241  Sum_probs=128.4

Q ss_pred             CcEEEEEEeCCCC-cCHHHHHHHHHHHHHhCC-eEEEc-cCCcEEEecCCcCCHHHHHHHHH--HCCCCCCCCCCCCccc
Q 008202          422 GGLFCGLHVDNGR-IAGKMKKTLREIIEKYNL-NVRIT-PNQNIILCDIRKAWKRPITTALA--QAGLLLPRYVDPLNIT  496 (574)
Q Consensus       422 G~~~v~v~vp~Gr-l~~~~l~~La~la~~yg~-~irlT-~~Qnlil~~I~~~~~~~l~~~L~--~~Gl~~~~~~~~~~r~  496 (574)
                      +.|++++.+|+|+ ++++||+.|++||++||. .+||| ++|||+|.+|+.++++++.++|.  +.|+..+. .++.+|+
T Consensus        94 ~~~tvRv~~P~Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv~~e~l~~i~~eL~~~~~Gl~~gg-sG~~vRn  172 (418)
T 3mm5_A           94 HFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGTRSEYLQPCFEDLGNLEIPFDIGG-SGSDLRT  172 (418)
T ss_dssp             BCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEECHHHHHHHHHHHHHSSSCCCBCC-CSSSBCC
T ss_pred             eEEEEEEeCCCCcccCHHHHHHHHHHHHHhCCCEEEEecCCCceEeCCCCHHHHHHHHHHHhcccccCCcCC-ccccccc
Confidence            3789999999998 899999999999999997 69999 89999999999999999999999  99998765 4556689


Q ss_pred             cccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCC-CcccEEEEeec
Q 008202          497 AMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARP-YMAELGLVGDG  564 (574)
Q Consensus       497 ~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~-~~aDIGlvG~~  564 (574)
                      +++|+|..+|.++++||+.++..|.+++.+.++...||  .+|||+||||||+|+++ +++||||+|+-
T Consensus       173 i~aC~G~~~C~~a~~Dt~~la~~L~~~l~~~~~~~~LP--~KfKI~iSGCpN~C~~~~~~~DIGiiG~~  239 (418)
T 3mm5_A          173 PSACMGPALCEFACYDTLELCYDLTMTYQDELHRPMWP--YKFKIKCAGCPNDCVASKARSDFAIIGTW  239 (418)
T ss_dssp             CEECCGGGTCTTCSSCHHHHHHHHHHHTHHHHHSCCSS--SCBCEEEESSTTCTTCHHHHCSEEEEEEE
T ss_pred             eEecCCcccccchhhhHHHHHHHHHHHHHHhhhhccCC--cceEEeeeccccchhhHHHhccccccccc
Confidence            99999999999999999999999999988887776665  68999999999999998 79999999974

>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*

Probab=99.91  E-value=5.7e-25  Score=235.13  Aligned_cols=141  Identities=11%  Similarity=0.178  Sum_probs=128.9

Q ss_pred             CcEEEEEEeCCCC-cCHHHHHHHHHHHHHhCC-eEEEcc-CCcEEEecCCcCCHHHHHHHHH-HCCCCCCCCCCCCcccc
Q 008202          422 GGLFCGLHVDNGR-IAGKMKKTLREIIEKYNL-NVRITP-NQNIILCDIRKAWKRPITTALA-QAGLLLPRYVDPLNITA  497 (574)
Q Consensus       422 G~~~v~v~vp~Gr-l~~~~l~~La~la~~yg~-~irlT~-~Qnlil~~I~~~~~~~l~~~L~-~~Gl~~~~~~~~~~r~~  497 (574)
                      +.|++++.+|+|+ ++++||+.|++||++||. .+|||+ +|||+|.+++.+++++|.++|. ++|+..+. .++.+|++
T Consensus        96 ~~~tVRV~~P~Gr~lTaeqLR~LadIAekyG~G~irlTt~rqNI~L~gi~~e~le~l~~eL~~~~Gl~~gg-sG~~vRni  174 (437)
T 3or1_A           96 HFHTVRLAQPAAKYYTAEYLEAICDVWDLRGSGLTNMHGSTGDIVLLGTQTPQLEEIFFEMTHNLNTDLGG-SGSNLRTP  174 (437)
T ss_dssp             BCCEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEECCCGGGHHHHHHHHHHHSCCCBCC-CSSSBCCC
T ss_pred             eEEEEEEeCCCCCccCHHHHHHHHHHHHHhCCCEEEEcCccceEEEecCCHHHHHHHHHHHHhhcCcCccc-cCCcceee
Confidence            4789999999998 899999999999999997 699997 5999999999999999999999 89998765 35566899


Q ss_pred             ccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCC-CcccEEEEeecC
Q 008202          498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARP-YMAELGLVGDGP  565 (574)
Q Consensus       498 ~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~-~~aDIGlvG~~~  565 (574)
                      ++|+|..+|.++++||..++.+|.+++.+.++...||  .||+|+||||||+|+++ +++||||+|+-.
T Consensus       175 vaC~G~~~C~~a~~DT~~la~~L~~~l~~~~~~~~LP--~KfKI~iSGCpN~C~~~v~~aDIGiiG~~r  241 (437)
T 3or1_A          175 ESCLGISRCEFACYDTQLMCYQLTQDYQDELHRPAFP--YKFKFKFDGCPNGCVASMARSDFAVIGTWK  241 (437)
T ss_dssp             EECCGGGSCSSCCSCHHHHHHHHHHHTHHHHHSCCSS--SCBCEEEESSTTCTTCHHHHCSEEEEEEES
T ss_pred             eccccccccCccccccchhhhhhHhhhhhccccccCC--ceeeEeeccccccccchhhhcccccccccc
Confidence            9999999999999999999999999998888777775  68999999999999999 699999999743

>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*

Probab=99.91  E-value=7.4e-25  Score=231.80  Aligned_cols=146  Identities=15%  Similarity=0.183  Sum_probs=132.8

Q ss_pred             Ceeee----cCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHC-CCCCCC
Q 008202          415 GWHEQ----GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA-GLLLPR  488 (574)
Q Consensus       415 G~~~q----~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~-Gl~~~~  488 (574)
                      |++.+    ++|.|+|++.+|. +++++||+.|++||++||. .+|||++|||+|.+|++++++++.++|.+. |+..+.
T Consensus        39 Gv~~~~~e~gd~~~~vRv~~p~-~lt~~qlr~ladiA~kyg~G~lrlTtrqni~l~gv~~~~l~~l~~~L~~~~Gl~~g~  117 (366)
T 3mm5_B           39 GVIKRVAESGDVIYVVRFGTPR-LLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQERVGFPCGG  117 (366)
T ss_dssp             TEEEEEETTSCEEEEEEECCCS-EEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESCGGGHHHHHHHHHHHHCCCBCC
T ss_pred             CEEEeeccCCCceEEEEECCcc-ccCHHHHHHHHHHHHHhCCCeEEEcCCCeEEEecCCHHHHHHHHHHHHHhcCCCccc
Confidence            66654    3688899999998 9999999999999999987 799999999999999999999999999998 998765


Q ss_pred             CCCC-----CccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEee
Q 008202          489 YVDP-----LNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD  563 (574)
Q Consensus       489 ~~~~-----~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~  563 (574)
                      ..++     .+|++++|+|+.+|+++++||+.++.+|.++|.+.+....||  .||+|+||||||+|++++.+||||+|.
T Consensus       118 ~~G~~~~~~~~rni~aC~g~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP--~k~kI~vsgC~~~C~~~~~~Dig~~g~  195 (366)
T 3mm5_B          118 TWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEYFTDHKLP--AMCRISLACCANMCGAVHASDIAIVGI  195 (366)
T ss_dssp             CEETTTTEECCCCCBCCCHHHHCSSCSSCSHHHHHHHHHHTHHHHHSCCBS--SCCCEEEESSTTCSSSGGGSSEEEEEE
T ss_pred             ccCCcccccceeeeecCCCccccchHHHHHHHHHHHHHHHHHHhhcccccc--ccceeccccCccccccccccccccccc
Confidence            3144     679999999999999999999999999999999988877775  689999999999999999999999997

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=97.29  E-value=0.00019  Score=74.14  Aligned_cols=178  Identities=20%  Similarity=0.244  Sum_probs=107.2

Q ss_pred             cCCCChhHHHHHHHHHHHHHHHhCCCCc---chhhhHHHHHHHhhhhHHHHHHHHHhCCCCCCCCCCCcccccccCCeee
Q 008202          342 LGYVPKEDILYAVKAIVVTQRENGRRDD---RKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHE  418 (574)
Q Consensus       342 l~~v~~eev~~~~~ai~~~~rd~g~R~~---R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~~~~~~~~~~~~~~G~~~  418 (574)
                      .+..+++.+++-+...++...+.|..+-   =|..-...+     ++.+|...++ ..             .+-|+|+-+
T Consensus       153 yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~S~v~~~-----i~ayr~la~~-~d-------------yPLHlGvTE  213 (366)
T 3noy_A          153 YGYPSAEALAESALRWSEKFEKWGFTNYKVSIKGSDVLQN-----VRANLIFAER-TD-------------VPLHIGITE  213 (366)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSHHHH-----HHHHHHHHHH-CC-------------CCEEECCSS
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeecCChHHH-----HHHHHHHHhc-cC-------------CCEEEccCC
Confidence            3445777777777777777777765220   011112221     2233333222 11             223667665


Q ss_pred             ecCCcEEEEEEeCCCCcCHHHHHHHHHHHH-HhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCCCCCCCcccc
Q 008202          419 QGDGGLFCGLHVDNGRIAGKMKKTLREIIE-KYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITA  497 (574)
Q Consensus       419 q~dG~~~v~v~vp~Grl~~~~l~~La~la~-~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~~~~~~~r~~  497 (574)
                      -+.+        ..|.+.+  -..|.-|.. --|..||++-...      +.+++.--++.|+.+|+....      ..+
T Consensus       214 AG~~--------~~G~ikS--sigiG~LL~dGIGDTIRVSLt~~------p~~Ev~va~~ILqslglR~~g------~~~  271 (366)
T 3noy_A          214 AGMG--------TKGIIKS--SVGIGILLYMGIGDTVRVSLTDD------PVVEVETAYEILKSLGLRRRG------VEI  271 (366)
T ss_dssp             CCSH--------HHHHHHH--HHHHHHHHHTTCCSEECCCCSSC------HHHHHHHHHHHHHHTTSCCSS------CEE
T ss_pred             CCCC--------cceeeeh--HHHHHHHHHhcccceEEEeCCCC------cHHHHHHHHHHHHhcCCCcCC------CEE
Confidence            3321        1223322  223444443 3455677653322      456666677899999997532      258


Q ss_pred             ccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCC-CcCCCCCcccEEEEeecCCceEEEE
Q 008202          498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCP-NGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       498 ~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCp-n~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      +|||   +|+....|.+.+    ++++++.+..+  +  .+++|+|-||- ||.+....||||+.| ++++..||.
T Consensus       272 ISCP---tCGRt~~dl~~~----~~~ie~~l~~~--~--~~lkVAVMGCvVNGPGEa~~ADiGiag-g~~~~~lf~  335 (366)
T 3noy_A          272 VACP---TCGRIEVDLPKV----VKEVQEKLSGV--K--TPLKVAVMGCVVNAIGEAREADIGLAC-GRGFAWLFK  335 (366)
T ss_dssp             EECC---CCTTCCSCHHHH----HHHHHHHTTTC--C--SCCEEEEESSSHHHHHHTTTCSEEEEE-CSSEEEEEE
T ss_pred             EECC---CCCCccccHHHH----HHHHHHHHhCC--C--CCCEEEEEcccccCCchhhhCCEeEec-CCCceEEEE
Confidence            9997   788877776554    56666666543  2  47999999999 999999999999999 678777774

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=97.18  E-value=0.00039  Score=71.87  Aligned_cols=111  Identities=15%  Similarity=0.140  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHHcCCCCCCCCCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhh
Q 008202          175 KDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVV  254 (574)
Q Consensus       175 ~~l~~i~~~L~~~~g~t~~a~gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~  254 (574)
                      +.++-.++-| +++|+-...     =++++||  .|....+|.++++.++.+++.                         
T Consensus       250 ~Ev~va~~IL-qslglR~~g-----~~~ISCP--tCGRt~~dl~~~~~~ie~~l~-------------------------  296 (366)
T 3noy_A          250 VEVETAYEIL-KSLGLRRRG-----VEIVACP--TCGRIEVDLPKVVKEVQEKLS-------------------------  296 (366)
T ss_dssp             HHHHHHHHHH-HHTTSCCSS-----CEEEECC--CCTTCCSCHHHHHHHHHHHTT-------------------------
T ss_pred             HHHHHHHHHH-HhcCCCcCC-----CEEEECC--CCCCccccHHHHHHHHHHHHh-------------------------
Confidence            3443334433 777643221     3899998  688888899999999987752                         


Q ss_pred             hhccCCCCCCCCCCCCCCcccCCCCCCceEEEEEcCC-CCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccc
Q 008202          255 KARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPT-DNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET  333 (574)
Q Consensus       255 ~~r~~~~~~~~~~~~~e~~yg~~~LPrKfkI~isgc~-~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~  333 (574)
                                             .+|..+||+|-||- |+.+...-+|||+++. .     ....||++|..        
T Consensus       297 -----------------------~~~~~lkVAVMGCvVNGPGEa~~ADiGiagg-~-----~~~~lf~~Ge~--------  339 (366)
T 3noy_A          297 -----------------------GVKTPLKVAVMGCVVNAIGEAREADIGLACG-R-----GFAWLFKHGKP--------  339 (366)
T ss_dssp             -----------------------TCCSCCEEEEESSSHHHHHHTTTCSEEEEEC-S-----SEEEEEETTEE--------
T ss_pred             -----------------------CCCCCCEEEEEcccccCCchhhhCCEeEecC-C-----CceEEEECCEE--------
Confidence                                   26678999999997 7788889999999972 1     25789999852        


Q ss_pred             cccccccccCCCChhHHHHHHHHHHHHHHH
Q 008202          334 TFPRLGEQLGYVPKEDILYAVKAIVVTQRE  363 (574)
Q Consensus       334 t~p~la~~l~~v~~eev~~~~~ai~~~~rd  363 (574)
                              +..|+.+++++.+..+++-|.+
T Consensus       340 --------v~~v~~~~~~~~l~~~I~~~~~  361 (366)
T 3noy_A          340 --------IKKVDESEMVDELLKEIQNMEK  361 (366)
T ss_dssp             --------EEEEESCHHHHHHHHHHHC---
T ss_pred             --------eeecCHHHHHHHHHHHHHHHHH
Confidence                    2247888998888888876543

>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*

Probab=95.27  E-value=0.021  Score=60.04  Aligned_cols=130  Identities=21%  Similarity=0.282  Sum_probs=80.4

Q ss_pred             ccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHHH-hCCeEEEccCCcEEEecCCc----CCHHHHHHHHHHCCCCC
Q 008202          412 SHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEK-YNLNVRITPNQNIILCDIRK----AWKRPITTALAQAGLLL  486 (574)
Q Consensus       412 ~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~~-yg~~irlT~~Qnlil~~I~~----~~~~~l~~~L~~~Gl~~  486 (574)
                      -|+|+.+-+.+        ..|.+.+.  ..|.-|..+ -|..||++=.      .-+.    +++.--.+.|+.+||..
T Consensus       226 LHLGvTEAG~~--------~~G~IKSa--igiG~LL~~GIGDTIRVSLT------~dP~e~~~~EV~va~~ILqslglR~  289 (406)
T 4g9p_A          226 LHLGLTEAGMG--------VKGIVASA--AALAPLLLEGIGDTIRVSLT------PSPKEPRTKEVEVAQEILQALGLRA  289 (406)
T ss_dssp             BEECCTTCBSH--------HHHHHHHH--HHHHHHHHTTCCSEEECCBC------CCTTSCTTHHHHHHHHHHHHTTSCC
T ss_pred             ceeeeecCCCc--------ccceechH--HHHHHHHhccCchhEEeecc------CCCCcccHHHHHHHHHHHHHhCCcc
Confidence            47787665543        23454332  233344333 3446886522      1122    35667789999999975


Q ss_pred             CCCCCCCccccccCCCCCCCccchhHHHh-hHHHHHHHHHHHHHhcC--CCCCCceEEEEecC-CCcCCCCCcccEEEEe
Q 008202          487 PRYVDPLNITAMACPSLPLCPLAITEAER-GIPDILKRIRAVFEKVG--LKYNESVVIRVTGC-PNGCARPYMAELGLVG  562 (574)
Q Consensus       487 ~~~~~~~~r~~~AC~G~~~C~~al~et~~-~a~~l~~~l~~~l~~~g--l~~~~~ikI~iSGC-pn~Ca~~~~aDIGlvG  562 (574)
                      ..      -.++|||   +|+....|... ++.++.++|++.+....  .+...+++|+|=|| -||=+....||||+.|
T Consensus       290 ~~------~~iiSCP---tCGRt~~d~~~~la~~v~~~l~~~~~~~~~~~~~~~~l~VAVMGCvVNGPGEa~~ADiGi~~  360 (406)
T 4g9p_A          290 FA------PEVTSCP---GCGRTTSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISL  360 (406)
T ss_dssp             CS------CEEEECC---CCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCEEEEESSTTTHHHHHHHSSEEEEC
T ss_pred             cC------CCcccCC---CCCcCcchHHHHHHHHHHHHHhhhhhhhhhccCCCCCCEEEEECCcccCcchhhhcCcCccc
Confidence            32      3589997   68877666533 55555566665544321  22224799999999 6999999999999986


Q ss_pred             ecCC
Q 008202          563 DGPN  566 (574)
Q Consensus       563 ~~~g  566 (574)
                      .+.|
T Consensus       361 ~G~G  364 (406)
T 4g9p_A          361 PGAG  364 (406)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            4443

>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*

Probab=91.25  E-value=0.16  Score=53.33  Aligned_cols=66  Identities=23%  Similarity=0.242  Sum_probs=45.9

Q ss_pred             CceEEEEEcCCCC-CcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHHHHHH
Q 008202          281 RKFKVAVTVPTDN-SVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVV  359 (574)
Q Consensus       281 rKfkI~isgc~~~-c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~ai~~  359 (574)
                      ..+||+|=||-=| -+...-+|||+.+...  |+...--||+.|..                +..|+.+++++.+..+++
T Consensus       334 ~~l~VAVMGCvVNGPGEa~~ADiGi~~~G~--G~~~~~~lf~~G~~----------------~~~v~~~~iv~~l~~~i~  395 (406)
T 4g9p_A          334 EELKVAVMGCVVNGPGESKHAHIGISLPGA--GEEPKAPVYADGKL----------------LTILKGEGIAEEFLRLVE  395 (406)
T ss_dssp             GGCEEEEESSTTTHHHHHHHSSEEEECCCT--TSCSEEEEEETTEE----------------EEEEESSCHHHHHHHHHH
T ss_pred             CCCEEEEECCcccCcchhhhcCcCcccCCC--CCCCeeeEEECCEE----------------EEecCHHHHHHHHHHHHH
Confidence            3589999999544 5567789999985332  32233568887642                224788889888888888


Q ss_pred             HHHHh
Q 008202          360 TQREN  364 (574)
Q Consensus       360 ~~rd~  364 (574)
                      -|-+.
T Consensus       396 ~~~~~  400 (406)
T 4g9p_A          396 DYVKT  400 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	574
d1aopa3	197	d.134.1.1 (A:149-345) Sulfite reductase hemoprotei	2e-62
d2akja4	171	d.134.1.1 (A:175-345) Ferredoxin--nitrite reductas	9e-30
d1zj8a4	165	d.134.1.1 (A:162-326) Sulfite reductase NirA {Myco	2e-26
d1zj8a2	152	d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycob	6e-26
d1zj8a2	152	d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycob	0.001
d1aopa2	80	d.58.36.1 (A:346-425) Sulfite reductase, domains 1	1e-24
d2akja2	153	d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase	3e-19
d2akja2	153	d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase	4e-06
d1aopa4	145	d.134.1.1 (A:426-570) Sulfite reductase hemoprotei	1e-18
d1zj8a1	80	d.58.36.1 (A:327-406) Sulfite reductase NirA {Myco	2e-17
d1zj8a1	80	d.58.36.1 (A:327-406) Sulfite reductase NirA {Myco	2e-12
d1aopa1	65	d.58.36.1 (A:81-145) Sulfite reductase, domains 1	1e-14
d1aopa1	65	d.58.36.1 (A:81-145) Sulfite reductase, domains 1	0.001
d2akja1	85	d.58.36.1 (A:346-430) Ferredoxin--nitrite reductas	2e-14
d2akja1	85	d.58.36.1 (A:346-430) Ferredoxin--nitrite reductas	6e-14
d1zj8a3	149	d.134.1.1 (A:407-555) Sulfite reductase NirA {Myco	1e-13
d1zj8a3	149	d.134.1.1 (A:407-555) Sulfite reductase NirA {Myco	4e-05
d2akja3	126	d.134.1.1 (A:431-556) Ferredoxin--nitrite reductas	2e-11
d2akja3	126	d.134.1.1 (A:431-556) Ferredoxin--nitrite reductas	8e-06
d3c7bb3	179	d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulf	3e-08
d2v4jb3	177	d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulf	3e-07
d2v4jb2	134	d.58.36.2 (B:2-135) Dissimilatory sulfite reductas	3e-04
d3c7bb2	119	d.58.36.2 (B:4-122) Dissimilatory sulfite reductas	0.002

>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]} Length = 197

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
species: Escherichia coli [TaxId: 562]

 Score =  202 bits (515), Expect = 2e-62
 Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 24/216 (11%)

Query: 197 DLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKA 256
           D+NRNVL    P   + +  A + A+ I+  L P++  Y ++W+D E++ T +       
Sbjct: 2   DMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDE------ 55

Query: 257 RNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQG 316
                         EPI G  +LPRKFK  V +P  N +D+  ND+  V +++       
Sbjct: 56  --------------EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVG- 100

Query: 317 FNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMK 376
           FNL VGGG+   H  + T+ R   + GY+P E  L   +A+V TQR+ G R DRK ++ K
Sbjct: 101 FNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTK 160

Query: 377 YLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKS 412
           Y +   G+E F++ VE+  G KFEP R    +EF  
Sbjct: 161 YTLERVGVETFKAEVERRAGIKFEPIR---PYEFTG 193

>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  113 bits (283), Expect = 9e-30
 Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 7/142 (4%)

Query: 266 FPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGM 325
              +         LPRK+   V    D       ND+  +  +       GFNL VGG  
Sbjct: 34  VTANSRGNLSITNLPRKWNPCVIGSHDLYEHPHINDLAYMPATKNGKF--GFNLLVGGFF 91

Query: 326 GRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE 385
                 E           +V  ED++   KA++   R+ G R +R+  RM +LI   G+E
Sbjct: 92  SIKRCEEAIPLD-----AWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGME 146

Query: 386 KFRSVVEQYYGKKFEPFRQLPE 407
            FR  VE+   ++        E
Sbjct: 147 AFRGEVEKRMPEQVLERASSEE 168

>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  103 bits (258), Expect = 2e-26
 Identities = 52/212 (24%), Positives = 77/212 (36%), Gaps = 50/212 (23%)

Query: 196 GDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVK 255
           GD  R VL  P      D +             T         ++               
Sbjct: 1   GDCPRVVLGSPLAGESLDEVLD----------PTWAIEEIVRRYIGKPD----------- 39

Query: 256 ARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQ 315
                                  LPRK+K A++   D + +I  ND+  + V+     P 
Sbjct: 40  --------------------FADLPRKYKTAISGLQDVAHEI--NDVAFIGVNHPEHGP- 76

Query: 316 GFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRM 375
           G +L+VGGG+     L     R+G    +VP  ++     A+    R+ G R  R  +R+
Sbjct: 77  GLDLWVGGGLSTNPML---AQRVGA---WVPLGEVPEVWAAVTSVFRDYGYRRLRAKARL 130

Query: 376 KYLISSWGIEKFRSVVEQYYGKKFEPFRQLPE 407
           K+LI  WGI KFR V+E  Y K+       PE
Sbjct: 131 KFLIKDWGIAKFREVLETEYLKRPLIDGPAPE 162

>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  101 bits (253), Expect = 6e-26
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 16/139 (11%)

Query: 72  SKVEIIKEQSNF--IRYPLNEELL---TDAPNVNESATQLIKFHGSYQQYNRDERGAKS- 125
           +  E +K+  N   +R  +         D+ +         ++ G Y Q  +   G  + 
Sbjct: 15  NANEELKKAGNPLDVRERIENIYAKQGFDSIDK-TDLRGRFRWWGLYTQREQGYDGTWTG 73

Query: 126 ---------YSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKD 176
                      FM+R +   G +S     T+  ++ +F   T  ++ RQ  Q H +  ++
Sbjct: 74  DDNIDKLEAKYFMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVEN 133

Query: 177 LKTVMRSIIRSMGSTLGAC 195
           +  + R +      T  AC
Sbjct: 134 VPEIWRRLDDVGLQTTEAC 152

>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 417 HEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDIRKAWKRPI 475
            +         +  D G ++    +TL +I  ++      I+  QN+    I       I
Sbjct: 78  DKLEAKYFMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEI 137

Query: 476 TTALAQAGL 484
              L   GL
Sbjct: 138 WRRLDDVGL 146

>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase, domains 1 and 3
species: Escherichia coli [TaxId: 562]

 Score = 95.5 bits (238), Expect = 1e-24
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 414 LGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRK 469
           +GW +  D      L ++NGRI       +K  L EI + +  + RIT NQN+I+  + +
Sbjct: 1   IGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPE 60

Query: 470 AWKRPITTALAQAGLL 485
           + K  I     ++GL+
Sbjct: 61  SEKAKIEKIAKESGLM 76

>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 82.6 bits (204), Expect = 3e-19
 Identities = 24/140 (17%), Positives = 59/140 (42%), Gaps = 16/140 (11%)

Query: 66  KTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLI----------KFHGSYQQ 115
           +  +  +  E +K + + ++  + + +   A    E   +            K+ G + +
Sbjct: 18  EFRSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHR 77

Query: 116 YNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GTLRLTTRQTFQLHGVLK 174
                R      FM+R K P G  +++    +  +  ++G  G   +TTRQ +Q+ GV+ 
Sbjct: 78  -----RKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVL 132

Query: 175 KDLKTVMRSIIRSMGSTLGA 194
            D+  +++ +     ++L +
Sbjct: 133 PDVPEIIKGLESVGLTSLQS 152

>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 414 LGWHEQ---GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLN--VRITPNQNIILCDIR 468
           LG   +     G     L + NG    +  + L  +I+KY  +    +T  QN  +  + 
Sbjct: 72  LGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVV 131

Query: 469 KAWKRPITTALAQAGL 484
                 I   L   GL
Sbjct: 132 LPDVPEIIKGLESVGL 147

>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
species: Escherichia coli [TaxId: 562]

 Score = 80.8 bits (199), Expect = 1e-18
 Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 492 PLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCA 551
           P    +MAC S P CPLA+ EAER +P  +  I  +  K G+  +E +V+RVTGCPNGC 
Sbjct: 1   PQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS-DEHIVMRVTGCPNGCG 59

Query: 552 RPYMAELGLVGDGPNSYQVF 571
           R  +AE+GLVG  P  Y + 
Sbjct: 60  RAMLAEVGLVGKAPGRYNLH 79

>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 74.8 bits (184), Expect = 2e-17
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 413 HLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDIRKAW 471
           H+G     +G    G+    GR++G +   + +++ +  +  +R TP Q +++ DI  A 
Sbjct: 5   HVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDAL 64

Query: 472 KRPITTALAQAGL 484
              +   L   GL
Sbjct: 65  LDDLIAGLDALGL 77

>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 8/74 (10%)

Query: 111 GSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLH 170
           G  +         K+    +      G+VS  +   + DL  + G   +R T  Q   + 
Sbjct: 7   GVQRL--------KNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVIL 58

Query: 171 GVLKKDLKTVMRSI 184
            +    L  ++  +
Sbjct: 59  DIPDALLDDLIAGL 72

>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]} Length = 65

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase, domains 1 and 3
species: Escherichia coli [TaxId: 562]

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 129 MLRTKNPCGKVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRS 187
           +LR + P G ++ + +  +D  A +    G++RLT RQTFQ HG+LKK++K V + +   
Sbjct: 1   LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSV 60

Query: 188 MGSTL 192
               L
Sbjct: 61  GLDAL 65

>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]} Length = 65

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase, domains 1 and 3
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 428 LHVDNGRIAGKMKKTLREIIEKYNLN--VRITPNQNIILCDIRKAWKRPITTALAQAGL 484
             +  G I  K  + + +   +  +   +R+T  Q      I K   +P+   L   GL
Sbjct: 4   CRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGL 62

>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTF 167
           ++ G + Q        +     +    P G++       +  +AD +G G LRLT  Q  
Sbjct: 7   EYLGVHPQ-------KQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNI 59

Query: 168 QLHGVLKKDLKTVMR 182
            +  V    + +++ 
Sbjct: 60  IIPNVENSKIDSLLN 74

>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 65.1 bits (159), Expect = 6e-14
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 407 EWEFKSHLGWHEQGDGGLF-CGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIIL 464
           +WE + +LG H Q   GL   GLH+  GR+     + L  I + Y +  +R+T  QNII+
Sbjct: 2   DWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIII 61

Query: 465 CDIRKA 470
            ++  +
Sbjct: 62  PNVENS 67

>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 66.4 bits (161), Expect = 1e-13
 Identities = 17/71 (23%), Positives = 31/71 (43%)

Query: 492 PLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCA 551
                 MAC  +  C L+  E       ++  +    E +  + +  + + + GCPN CA
Sbjct: 3   HWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCA 62

Query: 552 RPYMAELGLVG 562
           R  +A++G  G
Sbjct: 63  RIQIADIGFKG 73

>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 16/115 (13%)

Query: 279 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQ---GFNLYVGGGMGRTHRLETTF 335
           L     V +    ++   I   DIG      ++G      GF +++GG +G         
Sbjct: 46  LDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLD------- 98

Query: 336 PRLGEQLGYV--PKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFR 388
              G +L       +++   +  +V    ++    +    R    +     +  R
Sbjct: 99  AGFGRKLRQHKVTSDELGDYIDRVVRNFVKHRSEGE----RFAQWVIRAEEDDLR 149

>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 496 TAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYM 555
             +AC     C  AI E +     + + ++       +     V +  TGCPN C +  +
Sbjct: 7   GLVACTGSQFCGQAIIETKARALKVTEEVQ-----RLVSVTRPVRMHWTGCPNSCGQVQV 61

Query: 556 AELGLVG 562
           A++G +G
Sbjct: 62  ADIGFMG 68

>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 43.5 bits (102), Expect = 8e-06
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 280 PRKFKVAVTVPTDNSVDILTNDIGVVVVS---DENGEPQGFNLYVGGGMGRTHRLETTFP 336
            R  ++  T   ++   +   DIG +      +     +G +++VGG +G          
Sbjct: 42  TRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSD-------S 94

Query: 337 RLGEQLG-YVPKEDILYAVKAIVVTQ 361
            LG+     VP +D++  V  I++ Q
Sbjct: 95  HLGDIYKKAVPCKDLVPVVAEILINQ 120

>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} Length = 179

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 8/119 (6%)

Query: 274 YGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET 333
           +    LP   ++++    +    +  +DI +V + D      G  L     M    ++  
Sbjct: 40  FTDHKLPAMCRISLACCANMCGAVHASDIAIVGIHDGAAIMVGGKLSEARRMPELSKVVV 99

Query: 334 TFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE 392
            +              ++  VK I+     N  +    + R+   +   G E+F  +  
Sbjct: 100 PWVPNEP----PRWPTLVKYVKQILEAWAANANK----HERLIEWVDRIGWERFFELTG 150

>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Length = 177

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Desulfovibrio vulgaris [TaxId: 881]

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 15/143 (10%)

Query: 274 YGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET 333
           + +  LP   ++++    +    +  +DIGVV +   +G        V   +      + 
Sbjct: 38  FQSMRLPAPVRISLACCINMCGAVHCSDIGVVGIHRGDGVVIMVGGKVSNRISMPKFSKV 97

Query: 334 TFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393
               +  +        +   +K I+     N  + +    R+       G E+F S+   
Sbjct: 98  VVAYIPNE--PPRWPSLTKTIKHIIEVYSANAYKYE----RLGEWAERIGWERFFSLT-- 149

Query: 394 YYGKKFEP-----FRQLPEWEFK 411
             G +F       FR    + ++
Sbjct: 150 --GLEFSHHLIDDFRDPAYYTWR 170

>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: DsrA/DsrB N-terminal-domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Desulfovibrio vulgaris [TaxId: 881]

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 120 ERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKT 179
           E G K Y+  +R       +S      M D+AD++  G LR TTR   +     +  LK 
Sbjct: 56  ESGDKVYT--VRVGAA-RLMSITHIREMCDIADKYCGGHLRFTTRNNVEFMVADEASLKA 112

Query: 180 VMRSIIRSMGSTLGACG 196
           +    + S     G+  
Sbjct: 113 LKED-LASRKFDGGSLK 128

>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]} Length = 119

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: DsrA/DsrB N-terminal-domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 149 DLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGD 197
           D+AD++  G LR T+R   +     +  +  ++  +   +G   G   D
Sbjct: 69  DIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQERVGFPCGGTWD 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	574
d1aopa3	197	Sulfite reductase hemoprotein (SiRHP), domains 2 a	100.0
d1zj8a4	165	Sulfite reductase NirA {Mycobacterium tuberculosis	100.0
d2akja4	171	Ferredoxin--nitrite reductase, NIR {Spinach (Spina	100.0
d1zj8a2	152	Sulfite reductase NirA {Mycobacterium tuberculosis	99.97
d2akja2	153	Ferredoxin--nitrite reductase, NIR {Spinach (Spina	99.95
d1zj8a3	149	Sulfite reductase NirA {Mycobacterium tuberculosis	99.92
d2v4jb3	177	Dissimilatory sulfite reductase subunit beta, DsrB	99.91
d3c7bb3	179	Dissimilatory sulfite reductase subunit beta, DsrB	99.89
d1aopa4	145	Sulfite reductase hemoprotein (SiRHP), domains 2 a	99.87
d2v4ja3	189	Dissimilatory sulfite reductase subunit alpha, Dsr	99.87
d2akja3	126	Ferredoxin--nitrite reductase, NIR {Spinach (Spina	99.84
d3c7ba3	185	Dissimilatory sulfite reductase subunit alpha, Dsr	99.84
d1aopa1	65	Sulfite reductase, domains 1 and 3 {Escherichia co	99.81
d2akja1	85	Ferredoxin--nitrite reductase, NIR {Spinach (Spina	99.81
d1zj8a1	80	Sulfite reductase NirA {Mycobacterium tuberculosis	99.79
d1aopa4	145	Sulfite reductase hemoprotein (SiRHP), domains 2 a	99.79
d1aopa2	80	Sulfite reductase, domains 1 and 3 {Escherichia co	99.74
d1zj8a1	80	Sulfite reductase NirA {Mycobacterium tuberculosis	99.74
d2akja3	126	Ferredoxin--nitrite reductase, NIR {Spinach (Spina	99.72
d1zj8a3	149	Sulfite reductase NirA {Mycobacterium tuberculosis	99.7
d2akja1	85	Ferredoxin--nitrite reductase, NIR {Spinach (Spina	99.59
d2v4jb3	177	Dissimilatory sulfite reductase subunit beta, DsrB	99.55
d3c7bb3	179	Dissimilatory sulfite reductase subunit beta, DsrB	99.51
d1aopa2	80	Sulfite reductase, domains 1 and 3 {Escherichia co	99.5
d2v4jb2	134	Dissimilatory sulfite reductase subunit beta, DsrB	99.5
d3c7bb2	119	Dissimilatory sulfite reductase subunit beta, DsrB	99.46
d1zj8a2	152	Sulfite reductase NirA {Mycobacterium tuberculosis	99.37
d1aopa1	65	Sulfite reductase, domains 1 and 3 {Escherichia co	99.35
d3c7ba3	185	Dissimilatory sulfite reductase subunit alpha, Dsr	99.33
d2v4ja3	189	Dissimilatory sulfite reductase subunit alpha, Dsr	99.31
d2akja2	153	Ferredoxin--nitrite reductase, NIR {Spinach (Spina	99.3
d2akja4	171	Ferredoxin--nitrite reductase, NIR {Spinach (Spina	99.2
d2v4jb2	134	Dissimilatory sulfite reductase subunit beta, DsrB	98.98
d1zj8a4	165	Sulfite reductase NirA {Mycobacterium tuberculosis	98.98
d1aopa3	197	Sulfite reductase hemoprotein (SiRHP), domains 2 a	98.81
d3c7bb2	119	Dissimilatory sulfite reductase subunit beta, DsrB	98.75
d3c7ba2	166	Dissimilatory sulfite reductase subunit alpha, Dsr	97.24
d2v4ja2	166	Dissimilatory sulfite reductase subunit alpha, Dsr	97.08
d3c7ba2	166	Dissimilatory sulfite reductase subunit alpha, Dsr	96.18
d2v4ja2	166	Dissimilatory sulfite reductase subunit alpha, Dsr	96.04

>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.4e-50  Score=383.41  Aligned_cols=190  Identities=39%  Similarity=0.702  Sum_probs=157.0

Q ss_pred             CCCCcceecCCCCCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCccc
Q 008202          196 GDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYG  275 (574)
Q Consensus       196 gd~~RNV~acp~~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg  275 (574)
                      .|++|||||||+|+++.++.|++++|++|+++|.|++++|+|+|||+++++..+                    .||+|+
T Consensus         1 ~Dv~RNV~~~~~~~~~~~~~d~~~~A~~i~~~~~~~~~~y~ei~~~~~~~~~~~--------------------~~p~Y~   60 (197)
T d1aopa3           1 NDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTD--------------------EEPILG   60 (197)
T ss_dssp             CCCBCCCEECSSCSSTTHHHHHHHHHHHHHHHTCC---------------------------------------------
T ss_pred             CCCCccccCCCCccCchhHHHHHHHHHHHHHHhccccchHHHHHhccccccccc--------------------cCcccc
Confidence            389999999999999999999999999999999999999999999998886532                    478999


Q ss_pred             CCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccCCCChhHHHHHHH
Q 008202          276 TQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVK  355 (574)
Q Consensus       276 ~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~~v~~eev~~~~~  355 (574)
                      ..+|||||||+|||||+||+++++|||||+++.++ |...||+|++|||+|++++...++|++++.+++|++||++++++
T Consensus        61 ~~~LPRKFKIavsgc~~nc~~~~~nDiG~ia~~~~-g~~~Gf~V~vGGglg~~~~~~~~~~~~~~~~~~v~~e~vl~v~~  139 (197)
T d1aopa3          61 QTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAEN-GKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAE  139 (197)
T ss_dssp             -CCCSSCBCEEEECTTBCTTCGGGSSEEEEEEEET-TEEEEEEEEECCBCCCCTTCTTCCCBCCEEEEEEEGGGHHHHHH
T ss_pred             cccCCcceEEEEecCcccceeeeecceEEEEEEeC-CcceEEEEEEcceeeecCCCCCcccchhhhcccCCHHHHHHHHH
Confidence            99999999999999999999999999999999875 66689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCCCCCCCCC
Q 008202          356 AIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLP  406 (574)
Q Consensus       356 ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~~~~~~  406 (574)
                      +|+++|+++|+|.+|+++||||+|++||+|+|+++|++++|+++++++|..
T Consensus       140 aI~~v~rd~G~R~nR~kaRlk~li~~~G~e~Fr~~Ve~~~g~~l~~~~p~~  190 (197)
T d1aopa3         140 AVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYE  190 (197)
T ss_dssp             HHHHHHHHHSCSSCSTTCSHHHHHHHHCHHHHHHHHHHHHTCCCBCCCCCC
T ss_pred             HHHHHHHHhCCHhhccccchhhhHHhcCHHHHHHHHHHHhCCccccCCCcc
Confidence            999999999999999999999999999999999999999999999887654

>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1e-36  Score=285.73  Aligned_cols=153  Identities=32%  Similarity=0.540  Sum_probs=135.7

Q ss_pred             CCCCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcc
Q 008202          196 GDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIY  274 (574)
Q Consensus       196 gd~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~y  274 (574)
                      ||++||||+||++ .|+.++.|+++++.+|.++|..                                      +|+  |
T Consensus         1 Gd~vRNV~~~P~ag~~~~e~~D~~p~a~~i~~~~~~--------------------------------------~~~--~   40 (165)
T d1zj8a4           1 GDCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYIG--------------------------------------KPD--F   40 (165)
T ss_dssp             SSSEEEEEECTTTTTCTTCSCCTHHHHHHHHHHHTT--------------------------------------SGG--G
T ss_pred             CCCCcccCcCCcccCCcccccCCHHHHHHHHHHHhc--------------------------------------Chh--h
Confidence            7999999999964 9999999999999999988752                                      222  2


Q ss_pred             cCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHH
Q 008202          275 GTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYA  353 (574)
Q Consensus       275 g~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~  353 (574)
                        .+|||||||+||||+++|.  ++|||||+++...+|. .||+||+||++|++       |++|+.++ +|++||++++
T Consensus        41 --~~LPrKfki~vsGc~~~c~--~~~Dig~~~~~~~~g~-~Gf~v~vGGg~g~~-------p~~a~~l~~~v~~e~v~~~  108 (165)
T d1zj8a4          41 --ADLPRKYKTAISGLQDVAH--EINDVAFIGVNHPEHG-PGLDLWVGGGLSTN-------PMLAQRVGAWVPLGEVPEV  108 (165)
T ss_dssp             --SSCSSCEEEEEESSSCSCG--GGSSEEEEEEEETTTE-EEEEEEECCBCSSS-------CBCCEEEEEEECGGGHHHH
T ss_pred             --hcccccccccccCchHHHH--hcCcceEEEEeccCCc-ceEEEEEeEecCcc-------cchHHHHhccCCHHHHHHH
Confidence              5799999999999999995  5699999998765444 79999999999976       89999997 8999999999


Q ss_pred             HHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHh-CCCCC
Q 008202          354 VKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYY-GKKFE  400 (574)
Q Consensus       354 ~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~-g~~~~  400 (574)
                      +++|+++|+++|+|.+|+++||+|+|++||+|+|+++|++++ .+++.
T Consensus       109 v~ai~~~y~~~g~r~~r~~aRlk~li~~~G~e~f~~~v~~~~~~~~l~  156 (165)
T d1zj8a4         109 WAAVTSVFRDYGYRRLRAKARLKFLIKDWGIAKFREVLETEYLKRPLI  156 (165)
T ss_dssp             HHHHHHHHHHHSCCSSGGGCSHHHHHHHHCHHHHHHHHHHHTTSSCCE
T ss_pred             HHHHHHHHHHhCccchhhhHHHHHHHHHcCHHHHHHHHHHHHcccccC
Confidence            999999999999999999999999999999999999998764 44443

>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=9.1e-37  Score=287.95  Aligned_cols=159  Identities=26%  Similarity=0.352  Sum_probs=142.6

Q ss_pred             CCCcceecCCC-CCCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCccc
Q 008202          197 DLNRNVLAPPA-PLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYG  275 (574)
Q Consensus       197 d~~RNV~acp~-~~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg  275 (574)
                      |++||||+||+ ..|+.++.|+++++.+|.++|..+                                      |+..|+
T Consensus         2 D~vRNv~~~P~aGv~~~e~~D~~pla~~l~~~~~~~--------------------------------------~~~~~~   43 (171)
T d2akja4           2 DNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTAN--------------------------------------SRGNLS   43 (171)
T ss_dssp             SSBCCCBCCTTTTTCTTCSSCCHHHHHHHHHHHTTT--------------------------------------TTCCGG
T ss_pred             CCCccccCCCcCCCCcccccCHHHHHHHHHHHHHhc--------------------------------------cccchh
Confidence            89999999996 599999999999999999998642                                      333344


Q ss_pred             CCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHH
Q 008202          276 TQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAV  354 (574)
Q Consensus       276 ~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~  354 (574)
                      ..+|||||||+||||+++|+++++|||||+++.++ |+ .||+||+|||+|.++      |+.+..++ +|+++++++++
T Consensus        44 ~~~LPrKfKi~isGc~~~c~~~~~~DIG~~~~~~~-g~-~gf~v~vgGg~g~~~------~~~a~~~~~~v~~~~v~~~~  115 (171)
T d2akja4          44 ITNLPRKWNPCVIGSHDLYEHPHINDLAYMPATKN-GK-FGFNLLVGGFFSIKR------CEEAIPLDAWVSAEDVVPVC  115 (171)
T ss_dssp             GSCCSSCBCEEECCCTTCTTCGGGSSEEEEEEESS-SS-EEEEEEECCEECSSC------EECCEEEEEEEEGGGHHHHH
T ss_pred             hhhCchhceeeecCCccceeeeeecceEEEEeccC-Cc-ceEEEEEeeccCccc------cccceeccccCCHHHHHHHH
Confidence            57899999999999999999999999999999875 44 699999999999763      57788886 89999999999


Q ss_pred             HHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHHHhCCCCCC
Q 008202          355 KAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEP  401 (574)
Q Consensus       355 ~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~~~g~~~~~  401 (574)
                      ++|+++|+++|+|.+|+++||+++|++||+++|+++|++++++++.+
T Consensus       116 ~av~~~y~~~g~r~~r~~aR~~~li~~~G~e~f~~~v~~~l~~~~~e  162 (171)
T d2akja4         116 KAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQVLE  162 (171)
T ss_dssp             HHHHHHHHHHCCCSSGGGCSHHHHHHHHCHHHHHHHHHTTSTTSCCC
T ss_pred             HHHHHHHHHhcccchhhhhHHHHHHHHcCHHHHHHHHHHHhCccccc
Confidence            99999999999999999999999999999999999999999887654

>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=3.3e-32  Score=250.61  Aligned_cols=127  Identities=19%  Similarity=0.327  Sum_probs=110.7

Q ss_pred             CCCCChhhhhhhccCCCc--cchHHHhhh-cCCCCChhHHH-HhhhceeEeeccCcccC----------CccceEEEEEE
Q 008202           68 ETKRSKVEIIKEQSNFIR--YPLNEELLT-DAPNVNESATQ-LIKFHGSYQQYNRDERG----------AKSYSFMLRTK  133 (574)
Q Consensus        68 ~~k~~~~E~~K~~~~~l~--~~~~~~~~~-~~~~~~~~~~~-~~k~~G~y~Q~~r~~r~----------~~~~~fmvRir  133 (574)
                      .+++|++|+||.+|+||+  ..+.+.++. ..++++++|.+ ++||||+|+|++++.+.          ..+++||||||
T Consensus        11 ~e~Ln~~E~iK~~~~~l~~~~~i~~~~a~~~~~~i~~~d~~~rlK~~G~y~Q~~r~~~~~~~~~~~~~~~~~~~fmvRvr   90 (152)
T d1zj8a2          11 REPLNANEELKKAGNPLDVRERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVR   90 (152)
T ss_dssp             CSCCSHHHHHGGGSCGGGHHHHHHHTHHHHCGGGSCHHHHHTGGGGGTEEEEECTTCCGGGCSGGGHHHHEEEEEEEEEB
T ss_pred             CCCCCHHHHHhhcCcchhHHHHHHHHHhhcCccCCCHHHHHHHHHHhccceecccccccccccccccccCCCceEEEEEe
Confidence            357999999999999995  444443444 45789998876 79999999999988653          24678999999


Q ss_pred             cCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcC-CCCCCC
Q 008202          134 NPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGAC  195 (574)
Q Consensus       134 ipgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g-~t~~a~  195 (574)
                      +|+|.||++||+.|++||++||+|++|||||||||||||+++++++++++| .++| +|.++|
T Consensus        91 ~p~G~lt~~Ql~~la~ia~~yg~g~i~iTtRQ~iql~gI~~~~l~~i~~~L-~~~GL~t~~AC  152 (152)
T d1zj8a2          91 CDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRL-DDVGLQTTEAC  152 (152)
T ss_dssp             CGGGEECHHHHHHHHHHHHHHSTTEEEECTTSCEEEEEECGGGHHHHHHHH-HTTTCBCTTSS
T ss_pred             cCCCEecHHHHHHHHHHHHHhCCCCccccCCceEEecCCCHHHHHHHHHHH-HHcCCCccccC
Confidence            999999999999999999999999999999999999999999999999999 7777 777776

>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.95  E-value=5.4e-29  Score=228.95  Aligned_cols=118  Identities=21%  Similarity=0.383  Sum_probs=99.1

Q ss_pred             CCCCChhhhhhhccCCCccchHHHhhhcC----CCCC-----hhHHH-HhhhceeEeeccCcccCCccceEEEEEEcCCc
Q 008202           68 ETKRSKVEIIKEQSNFIRYPLNEELLTDA----PNVN-----ESATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCG  137 (574)
Q Consensus        68 ~~k~~~~E~~K~~~~~l~~~~~~~~~~~~----~~~~-----~~~~~-~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG  137 (574)
                      .+++|++|+||.+|+||+..+.++|.+.+    ++++     .+|.. ++||+|+|.|+++.     .|+||||||+|+|
T Consensus        20 ~k~ln~~E~iK~~~~~l~~~i~~~l~~~a~~~~~~~d~~~~~~dD~~~Rlk~~G~y~qr~~~-----~g~FMvRlr~pgG   94 (153)
T d2akja2          20 RSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHRRKHH-----YGRFMMRLKLPNG   94 (153)
T ss_dssp             CSSCCHHHHHHHHSCTTHHHHTCHHHHHTTCCHHHHTTSHHHHHHHHTGGGGGTEEECHHHH-----TTCEEEECCCGGG
T ss_pred             cCCCCHHHHhhhhcCcccchHHHhHHHHhhcCchhcccccccchhHHHHHHHhccccccCCC-----CCeEEEEeeCCCe
Confidence            46899999999999999975544443321    2222     24444 89999999997542     4789999999999


Q ss_pred             cccHHHHHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCC
Q 008202          138 KVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGST  191 (574)
Q Consensus       138 ~lt~~ql~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t  191 (574)
                      ++|++||+.|++||++|| +|+++||||||||||||+++++++++++| +++|++
T Consensus        95 ~lt~~Ql~~ladiA~~yg~~G~l~lTtRQniql~gI~~~dl~~i~~~L-~~~GL~  148 (153)
T d2akja2          95 VTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGL-ESVGLT  148 (153)
T ss_dssp             EEEHHHHHHHHHHHHTTGGGCCEEECTTSCEEEEEECGGGHHHHHHHH-HTTTCC
T ss_pred             EeCHHHHHHHHHHHHHHCCCCcEeeCCCceEEecCCCHHHHHHHHHHH-HHcCCC
Confidence            999999999999999999 69999999999999999999999999999 888844

>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=2.1e-26  Score=211.61  Aligned_cols=140  Identities=17%  Similarity=0.238  Sum_probs=117.7

Q ss_pred             CCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccC
Q 008202          198 LNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGT  276 (574)
Q Consensus       198 ~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~  276 (574)
                      ..||+++||+. +|..++.|++++|..|.+.|.++                                  |    +  +..
T Consensus         4 ~~r~~vaC~G~~~C~~a~~dt~~~a~~l~~~l~~~----------------------------------~----~--~~~   43 (149)
T d1zj8a3           4 WRRNLMACSGIEFCKLSFAETRVRAQHLVPELERR----------------------------------L----E--DIN   43 (149)
T ss_dssp             HHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHH----------------------------------T----H--HHH
T ss_pred             ccccceeCCCcccchhhHHhHHHHHHHHHHHHHHH----------------------------------h----h--hhc
Confidence            46999999985 99999999999999998887421                                  0    0  001


Q ss_pred             CCCCCceEEEEEcCCCCCcccccCCEEEEEEecCC---CcceeEEEEEccCCCCcCCcccccccccccc-C-CCChhHHH
Q 008202          277 QFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDEN---GEPQGFNLYVGGGMGRTHRLETTFPRLGEQL-G-YVPKEDIL  351 (574)
Q Consensus       277 ~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~---g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l-~-~v~~eev~  351 (574)
                      ..||+||||+|||||++|++++++||||++.....   ....||+|+|||+.|.+       |+++..+ . +|++++++
T Consensus        44 ~~lp~k~kI~iSGCpn~C~~~~i~DiG~~g~~~~~~~~~~~~g~~i~vGG~~g~~-------~~~~~~l~~~~v~~~~v~  116 (149)
T d1zj8a3          44 SQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLD-------AGFGRKLRQHKVTSDELG  116 (149)
T ss_dssp             TTCCSCCCEEEESSTTCTTCGGGSSEEEEEEEEESSSSCEEEEEEEEESCBCSTT-------CBCCEECTTCCEETTTHH
T ss_pred             ccCCCceEEEEEcCCcccccccccceeEEeecccccccCCCceEEEEeccCCCCc-------chhcceeeeccchHHHHH
Confidence            46999999999999999999999999999876421   23468999999999976       7888655 4 68999999


Q ss_pred             HHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHH
Q 008202          352 YAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFR  388 (574)
Q Consensus       352 ~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr  388 (574)
                      +++++|+++|++++.    ++|||.+||+|.|+|+||
T Consensus       117 ~~v~~ii~~y~~~~~----~~Erf~~~i~R~G~e~~r  149 (149)
T d1zj8a3         117 DYIDRVVRNFVKHRS----EGERFAQWVIRAEEDDLR  149 (149)
T ss_dssp             HHHHHHHHHHHHSCC----TTCCHHHHHHHSCGGGGC
T ss_pred             HHHHHHHHHHHHhcC----CCCCHHHHHHHcChhhcC
Confidence            999999999999876    478999999999999985

>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.91  E-value=5.5e-25  Score=207.93  Aligned_cols=143  Identities=18%  Similarity=0.226  Sum_probs=118.9

Q ss_pred             CCCCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcc
Q 008202          196 GDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIY  274 (574)
Q Consensus       196 gd~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~y  274 (574)
                      |..+|||++||+. .|..+..|++.++.+|.+.|.+                                          .|
T Consensus         1 g~~v~~i~~c~g~~~C~~~~~d~~~~~~al~del~~------------------------------------------~~   38 (177)
T d2v4jb3           1 GAGVSNIVHTQGWVHCHTPATDASGPVKAIMDEVFE------------------------------------------DF   38 (177)
T ss_dssp             SSSBCCCBCCCGGGTCSSCSSCSHHHHHHHHHHHHH------------------------------------------HH
T ss_pred             CCCcCCeeeCCCccccCCchhhHHHHHHHHHHHHHH------------------------------------------Hh
Confidence            4568999999996 8999999999999999887642                                          12


Q ss_pred             cCCCCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC------CCChh
Q 008202          275 GTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG------YVPKE  348 (574)
Q Consensus       275 g~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~------~v~~e  348 (574)
                      ....||+||||+||||||+|++++++||||+++..+    .||.+++||..+...    ..|+.+..+.      .++.+
T Consensus        39 ~~~~lp~k~kI~vSGCpn~C~~~~i~DIGi~G~~~~----~g~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  110 (177)
T d2v4jb3          39 QSMRLPAPVRISLACCINMCGAVHCSDIGVVGIHRG----DGVVIMVGGKVSNRI----SMPKFSKVVVAYIPNEPPRWP  110 (177)
T ss_dssp             SCCCSSSCBCEEEESSTTCCSSGGGSSEEEEEECCT----CEEEEEECCBCCCSS----SCCBCCEEEEEEEECCTTTCH
T ss_pred             cccccccccceeecCCCCcccccccCCeeEEeEecC----CCceeEecccccccc----ccccchhhhcccccccccccc
Confidence            236799999999999999999999999999998753    489999999765432    2244444332      35779


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHH
Q 008202          349 DILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE  392 (574)
Q Consensus       349 ev~~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve  392 (574)
                      ++++++++|+++|++++.    ++|||.+||+|+|+++|++.+.
T Consensus       111 ev~~~v~~il~~y~~~~~----~~Erf~~~i~R~G~e~F~e~~~  150 (177)
T d2v4jb3         111 SLTKTIKHIIEVYSANAY----KYERLGEWAERIGWERFFSLTG  150 (177)
T ss_dssp             HHHHHHHHHHHHHHHHCC----TTCCHHHHHHHHCHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHhCc----ccchHHHHHHHcCcHHHHHHHC
Confidence            999999999999999986    5799999999999999999984

>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.89  E-value=1.2e-23  Score=199.00  Aligned_cols=139  Identities=17%  Similarity=0.236  Sum_probs=112.4

Q ss_pred             CcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCC
Q 008202          199 NRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQ  277 (574)
Q Consensus       199 ~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~  277 (574)
                      +-||++||+. +|..+..|+..++++|.+.|..+                                          |...
T Consensus         6 ~~~~~~~~g~~~C~~~~~ds~gl~~al~deL~~~------------------------------------------~~~~   43 (179)
T d3c7bb3           6 LSNIVHTQGWIHCHTPAIDASGIVKAVMDELYEY------------------------------------------FTDH   43 (179)
T ss_dssp             CCCCBCCCHHHHCSSCSSCSHHHHHHHHHHHHHH------------------------------------------HSSC
T ss_pred             ccceeeCCCccccCCccccchHHHHHHHHHHHHH------------------------------------------Hhhc
Confidence            5699999997 79999999999999998876311                                          2235


Q ss_pred             CCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCcccccccccccc------CCCChhHHH
Q 008202          278 FLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL------GYVPKEDIL  351 (574)
Q Consensus       278 ~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l------~~v~~eev~  351 (574)
                      .||+||||+||||||+|++++++||||++..      .++.+++||.++...+.    +.....+      ..++.++++
T Consensus        44 ~lP~k~KI~vSGCpn~C~~~~i~DIGi~G~~------~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~  113 (179)
T d3c7bb3          44 KLPAMCRISLACCANMCGAVHASDIAIVGIH------DGAAIMVGGKLSEARRM----PELSKVVVPWVPNEPPRWPTLV  113 (179)
T ss_dssp             CBSSCCCEEEESSTTCCSSGGGCSEEEEEEC------CEEEEEECCBCSCSSSC----CBCCEEEEEEEECCTTTCHHHH
T ss_pred             cccccceeEEeccCCcCCCccccceeeEEec------cCCceecceecCccccc----ccccceeecccccCCcchhHHH
Confidence            7999999999999999999999999999865      37888888755432221    2222222      135678999


Q ss_pred             HHHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHHH
Q 008202          352 YAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ  393 (574)
Q Consensus       352 ~~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve~  393 (574)
                      +++++|++.|+++++    ++|||.+|++|+|+++|++++..
T Consensus       114 ~~v~~il~~Y~e~~~----~~Erf~~~i~RvG~~~f~e~v~l  151 (179)
T d3c7bb3         114 KYVKQILEAWAANAN----KHERLIEWVDRIGWERFFELTGL  151 (179)
T ss_dssp             HHHHHHHHHHHHHCC----TTCCHHHHHHHHCHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCc----chhHHHHHHHHcCcHHHHHHHcC
Confidence            999999999999987    47999999999999999999964

>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.6e-23  Score=191.51  Aligned_cols=130  Identities=12%  Similarity=0.089  Sum_probs=109.3

Q ss_pred             CcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccCC
Q 008202          199 NRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQ  277 (574)
Q Consensus       199 ~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~  277 (574)
                      +||+++||+. +|+.++.++++++..|.+.|...   +                                      ....
T Consensus         3 ~r~~vAC~G~~~C~~gi~dtk~~a~~l~~~l~~~---~--------------------------------------~~~~   41 (145)
T d1aopa4           3 RENSMACVSFPTCPLAMAEAERFLPSFIDNIDNL---M--------------------------------------AKHG   41 (145)
T ss_dssp             HHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHH---H--------------------------------------HHTT
T ss_pred             ccceeeCCccchHHHHHHHHHHHHHHHHHHHHHH---H--------------------------------------hhcc
Confidence            6999999985 99999999999988888876320   0                                      0001


Q ss_pred             CCCCceEEEEEcCCCCCcccccCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHHHH
Q 008202          278 FLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKA  356 (574)
Q Consensus       278 ~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~~a  356 (574)
                      .+|.||||+|||||++|++++++||||++...     .+|++++||+.+.        +++++.+. .|+++|+++++++
T Consensus        42 ~~~~~~kI~vSGC~n~C~~~~~~DIG~~g~~~-----~~~~i~~GG~~~~--------~r~g~~~~~~v~~~ev~~~v~~  108 (145)
T d1aopa4          42 VSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAP-----GRYNLHLGGNRIG--------TRIPRMYKENITEPEILASLDE  108 (145)
T ss_dssp             CTTCCCCEEEESSTTCTTCGGGSSEEEEEEET-----TEEEEEECCCTTS--------CSCCEEEEEEEEHHHHHHHHHH
T ss_pred             cccCceEEEEecCCCCCccceecceeEEEecC-----CceEEEecCCCCC--------CcccceeeccCCHHHHHHHHHH
Confidence            25789999999999999999999999998765     3799999997542        68888886 7999999999999


Q ss_pred             HHHHHHHhCCCCcchhhhHHHHHHHhhhhH
Q 008202          357 IVVTQRENGRRDDRKYSRMKYLISSWGIEK  386 (574)
Q Consensus       357 i~~~~rd~g~R~~R~~aRlk~li~r~G~e~  386 (574)
                      |++.|+++++    .+|||..|++|+|+++
T Consensus       109 il~~Y~~~~~----~~Erf~~~i~R~G~~k  134 (145)
T d1aopa4         109 LIGRWAKERE----AGEGFGDFTVRAGIIR  134 (145)
T ss_dssp             HHHHHHHHCC----TTCCHHHHHHHTTSSC
T ss_pred             HHHHHHHhCc----CCCcHHHHHHHcCchh
Confidence            9999999977    5799999999999854

>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Dissimilatory sulfite reductase subunit alpha, DsrA
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.87  E-value=1.4e-22  Score=192.88  Aligned_cols=145  Identities=16%  Similarity=0.108  Sum_probs=118.1

Q ss_pred             CCCCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcc
Q 008202          196 GDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIY  274 (574)
Q Consensus       196 gd~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~y  274 (574)
                      |+.+|||++||++ +|..+..|++++|.+|.+.|.-.                                          +
T Consensus         1 G~~vRtv~AC~G~~~C~~g~~Dt~~la~~L~~~f~~~------------------------------------------~   38 (189)
T d2v4ja3           1 GSNLRTPESCLGKSRCEFACYDSQAACYELTMEYQDE------------------------------------------L   38 (189)
T ss_dssp             SSSBCCCEECCGGGSCTTCSSCHHHHHHHHHHHTHHH------------------------------------------H
T ss_pred             CCCCCCCCCCCCcccccchHhhHHHHHHHHHHHHhhc------------------------------------------c
Confidence            6789999999995 99999999999999998776310                                          0


Q ss_pred             cCCCCCCceEEEEEcCCCCCcccc-cCCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHH
Q 008202          275 GTQFLPRKFKVAVTVPTDNSVDIL-TNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILY  352 (574)
Q Consensus       275 g~~~LPrKfkI~isgc~~~c~~~~-~~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~  352 (574)
                      ....+|.||||+|||||++|+++. .+|||++++.+     .|+.+++||..+... .+...++++..+. ..+.|++++
T Consensus        39 ~~~~~p~K~Ki~vsGCpn~C~~a~~~~Digiig~~~-----~g~~~~~gg~~~~~~-G~~~g~~~~~~~~~~~~~dev~~  112 (189)
T d2v4ja3          39 HRPAFPYKFKFKFDACPNGCVASIARSDFSVIGTWK-----RGASILCGAKAPILD-GAQMGSLLVPFVAAEEPFDEIKE  112 (189)
T ss_dssp             HSCCSSSCBCEEEESSTTCTTCHHHHCSEEEEEEES-----EEEEEEECCBCSTTT-CCBCCEEEEEEECCCTTCHHHHH
T ss_pred             cccccccccccccCccccccccchhcccceEEEeec-----cCceeeecccccccc-CccccceeEEeeccchhHHHHHH
Confidence            125699999999999999999986 58999999875     489999998654321 1112255665554 468899999


Q ss_pred             HHHHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHH
Q 008202          353 AVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE  392 (574)
Q Consensus       353 ~~~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve  392 (574)
                      ++++++++|+++++    ++|||..+|+|+|+++|++.+.
T Consensus       113 vv~~ii~~Y~e~ak----~~ER~g~~IeRvGle~F~e~v~  148 (189)
T d2v4ja3         113 VVEKIWDWWMEEGK----NRERLGETMKRLSFQKLLEVTE  148 (189)
T ss_dssp             HHHHHHHHHHHHSC----TTCCHHHHHHHHCHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCc----ccchhhhhHHhhCcHHHHHHHC
Confidence            99999999999997    5799999999999999998874

>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.84  E-value=5.1e-22  Score=177.28  Aligned_cols=114  Identities=20%  Similarity=0.299  Sum_probs=96.9

Q ss_pred             CCCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCccc
Q 008202          197 DLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYG  275 (574)
Q Consensus       197 d~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg  275 (574)
                      ..+||+++||+. +|..++.|+++++.+|.+.|..                                             
T Consensus         3 ~~~r~~vaC~G~~~C~~~~~dt~~~a~~l~~~l~~---------------------------------------------   37 (126)
T d2akja3           3 ILMKGLVACTGSQFCGQAIIETKARALKVTEEVQR---------------------------------------------   37 (126)
T ss_dssp             TTTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHHH---------------------------------------------
T ss_pred             ccccCCeeCCCcccchhhHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence            468999999985 9999999999999999988631                                             


Q ss_pred             CCCCCCceEEEEEcCCCCCcccccCCEEEEEEec--CCCc-ceeEEEEEccCCCCcCCccccccccccccC-CCChhHHH
Q 008202          276 TQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD--ENGE-PQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDIL  351 (574)
Q Consensus       276 ~~~LPrKfkI~isgc~~~c~~~~~~DIG~va~~~--~~g~-~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~  351 (574)
                      ...+|+||||+|||||++|+++.++||||++...  .+|+ ..||+||+||++|..       |++|+.++ +|+++|++
T Consensus        38 ~~~~p~k~kI~iSGCpn~C~~~~i~DIG~~G~~~~~~~g~~~~~~~v~vGG~~g~~-------~~~g~~~~~~v~~~~~~  110 (126)
T d2akja3          38 LVSVTRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSD-------SHLGDIYKKAVPCKDLV  110 (126)
T ss_dssp             HEECSSCCEEEEESSTTCTTCGGGSSEEEEEEEEECTTCCEEEEEEEEECCBCSTT-------CBCCEEEEEEEETTTHH
T ss_pred             cccCCCceEEEEeCCcchhhhhccCceEEEEEeccccccccccEEEEEeCCCCCCC-------CchhhhhhcCCCHHHHH
Confidence            1247999999999999999999999999999853  2232 468999999999876       89999997 79999999


Q ss_pred             HHHHHH-HHHHH
Q 008202          352 YAVKAI-VVTQR  362 (574)
Q Consensus       352 ~~~~ai-~~~~r  362 (574)
                      ++++++ ++.|.
T Consensus       111 ~~v~~~li~~y~  122 (126)
T d2akja3         111 PVVAEILINQFG  122 (126)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhc
Confidence            999886 46653

>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Dissimilatory sulfite reductase subunit alpha, DsrA
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.84  E-value=3e-21  Score=183.35  Aligned_cols=142  Identities=18%  Similarity=0.124  Sum_probs=113.5

Q ss_pred             CCcceecCCCC-CCchhhhhHHHHHHHHHHHhCCCcccccceeccccccccCCChhhhhhccCCCCCCCCCCCCCCcccC
Q 008202          198 LNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGT  276 (574)
Q Consensus       198 ~~RNV~acp~~-~~~~~~~d~~~la~~l~~~l~p~~~ay~e~wld~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~  276 (574)
                      +.|+++|||++ +|..++.||+.+|.+|.+.|..       .+                                  + .
T Consensus         2 ~lRt~~AC~G~~~C~~a~~dt~~la~~L~~~f~~-------~~----------------------------------~-~   39 (185)
T d3c7ba3           2 DLRTPSACMGPALCEFACYDTLELCYDLTMTYQD-------EL----------------------------------H-R   39 (185)
T ss_dssp             SBCCCEECCGGGTCTTCSSCHHHHHHHHHHHTHH-------HH----------------------------------H-S
T ss_pred             CCCCcCCCCCcccccchhhhHHHHHHHHHHHHhh-------hh----------------------------------c-c
Confidence            46999999984 9999999999999999887631       00                                  0 1


Q ss_pred             CCCCCceEEEEEcCCCCCccccc-CCEEEEEEecCCCcceeEEEEEccCCCCcCCccccccccccccC-CCChhHHHHHH
Q 008202          277 QFLPRKFKVAVTVPTDNSVDILT-NDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAV  354 (574)
Q Consensus       277 ~~LPrKfkI~isgc~~~c~~~~~-~DIG~va~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~la~~l~-~v~~eev~~~~  354 (574)
                      ..+|.||||+||||||+|+.+.. +|+||++..      .+|++++||..|...+. ...++++..+. .++.|++++++
T Consensus        40 ~~~p~k~ki~vSGCpn~C~~~~~~~d~gi~~~~------~~~~~~~gg~~g~~~g~-~~~~~~~~~~~~~~~~dev~~~v  112 (185)
T d3c7ba3          40 PMWPYKFKIKCAGCPNDCVASKARSDFAIIGTW------RGATILIGGKAPFVEGA-VIGWVAVPFVEVEKPYDEIKEIL  112 (185)
T ss_dssp             CCSSSCBCEEEESSTTCTTCHHHHCSEEEEEEE------EEEEEEECCBCSTTTCC-BCCEEEEEEECCCTTCHHHHHHH
T ss_pred             cccccccccccccCCccchhhhhhccceEeccc------ccceEeeccccCcCCCc-cccceEEEEeccCCCHHHHHHHH
Confidence            46899999999999999998765 799998765      48999999866533211 11234444444 56889999999


Q ss_pred             HHHHHHHHHhCCCCcchhhhHHHHHHHhhhhHHHHHHH
Q 008202          355 KAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE  392 (574)
Q Consensus       355 ~ai~~~~rd~g~R~~R~~aRlk~li~r~G~e~fr~~ve  392 (574)
                      ++++++|+++|+    ++|||..+|+|+|++.|++++.
T Consensus       113 ~~ii~~y~e~g~----~~ER~g~~ieRvGle~fke~l~  146 (185)
T d3c7ba3         113 EAIWDWWDEEGK----FRERIGELIWRKGMREFLKVIG  146 (185)
T ss_dssp             HHHHHHHHHHCC----TTCCHHHHHHHHCHHHHHHHTT
T ss_pred             HHHHHHHHHhCC----CcchHHHHHHHcChHHHHHHHC
Confidence            999999999997    5799999999999999998874

>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase, domains 1 and 3
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.7e-21  Score=151.73  Aligned_cols=61  Identities=39%  Similarity=0.709  Sum_probs=53.9

Q ss_pred             EEEEEcCCccccHHHHHHHHHHHHHhC-CCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCC
Q 008202          129 MLRTKNPCGKVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGS  190 (574)
Q Consensus       129 mvRiripgG~lt~~ql~~la~iA~~yG-~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~  190 (574)
                      |+|+|+|+|.+|++|++.||++|++|| +|++|+|||||||||||+++++++++++| ++.|+
T Consensus         1 MiRiriPgG~it~~ql~~la~ia~kyg~~g~i~~TtRQ~iql~~v~~~~l~~v~~~L-~~~GL   62 (65)
T d1aopa1           1 LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQML-HSVGL   62 (65)
T ss_dssp             CEECCCGGGEEEHHHHHHHHHHHHHHBSSCCEEECTTSCEEECCBC-----CHHHHH-HHTTC
T ss_pred             CEEEecCCCCcCHHHHHHHHHHHHHhcCCCceeecCcceEEeCCCCHHHHHHHHHHH-HHcCC
Confidence            899999999999999999999999998 79999999999999999999999999999 88874

>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.81  E-value=3.6e-21  Score=159.91  Aligned_cols=74  Identities=19%  Similarity=0.300  Sum_probs=68.8

Q ss_pred             HHHHhhhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHH
Q 008202          103 ATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMR  182 (574)
Q Consensus       103 ~~~~~k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~  182 (574)
                      |+++++|+|+|.|++.       |+||||+|+|+|+||++|++.|++||++||+|+||+|||||||||||+.++++++++
T Consensus         2 dw~r~~~~Gv~~Qk~~-------g~~~vri~~p~G~lt~~ql~~la~ia~~yg~g~irlTtrQni~l~~i~~~~l~~l~~   74 (85)
T d2akja1           2 DWERREYLGVHPQKQQ-------GLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLN   74 (85)
T ss_dssp             SCCCCCCBEEEECSST-------TEEEEEECCGGGEECHHHHHHHHHHHHHHSSSEEEEETTTEEEEEEEETTTHHHHTT
T ss_pred             ccccccceEEeecCCC-------CeEEEEEEcCCcEeCHHHHHHHHHHHHHHCCCcEEECCCCcEEECCCCHHHHHHHHH
Confidence            4556789999999864       589999999999999999999999999999999999999999999999999999986


Q ss_pred             H
Q 008202          183 S  183 (574)
Q Consensus       183 ~  183 (574)
                      +
T Consensus        75 E   75 (85)
T d2akja1          75 E   75 (85)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=3e-20  Score=152.62  Aligned_cols=75  Identities=17%  Similarity=0.236  Sum_probs=70.4

Q ss_pred             hhceeEeeccCcccCCccceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHH
Q 008202          108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRS  187 (574)
Q Consensus       108 k~~G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~  187 (574)
                      .+.|+|+|+|        |.||||+++|+|++|++|++.|+++|++||+|+||+||||||||+||+++++++++++| ++
T Consensus         4 dh~Gv~~q~d--------G~~~vri~~p~G~it~~ql~~la~ia~~yg~g~i~lTtrq~l~l~~i~~~~~~~v~~~L-~~   74 (80)
T d1zj8a1           4 DHVGVQRLKN--------GLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGL-DA   74 (80)
T ss_dssp             CCCEEEECTT--------SSEEEEEBCBTTEEEHHHHHHHHHHHHHHTCCCEEECTTSCEEEEEECHHHHHHHHHHH-HH
T ss_pred             CcceEeeecC--------CcEEEEEeccCcEECHHHHHHHHHHHHHhCCCeEEECCCCcEEEcCCCHHHHHHHHHHH-HH
Confidence            4679999986        47999999999999999999999999999999999999999999999999999999999 88


Q ss_pred             cCCC
Q 008202          188 MGST  191 (574)
Q Consensus       188 ~g~t  191 (574)
                      .|+.
T Consensus        75 ~Gl~   78 (80)
T d1zj8a1          75 LGLQ   78 (80)
T ss_dssp             TTCB
T ss_pred             ccCC
Confidence            8854

>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.5e-20  Score=170.05  Aligned_cols=80  Identities=48%  Similarity=0.951  Sum_probs=73.8

Q ss_pred             CCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEE
Q 008202          492 PLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVF  571 (574)
Q Consensus       492 ~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~  571 (574)
                      |++|+++||||+++|++|++||+.++.+|.++|++++...++. +.++|||||||||+|++|+++||||+|+..+.|++|
T Consensus         1 P~~r~~vAC~G~~~C~~gi~dtk~~a~~l~~~l~~~~~~~~~~-~~~~kI~vSGC~n~C~~~~~~DIG~~g~~~~~~~i~   79 (145)
T d1aopa4           1 PQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS-DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLH   79 (145)
T ss_dssp             HHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTTCT-TCCCCEEEESSTTCTTCGGGSSEEEEEEETTEEEEE
T ss_pred             CCccceeeCCccchHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCceEEEEecCCCCCccceecceeEEEecCCceEEE
Confidence            5678999999999999999999999999999999988877654 468999999999999999999999999988999998


Q ss_pred             E
Q 008202          572 Q  572 (574)
Q Consensus       572 l  572 (574)
                      +
T Consensus        80 ~   80 (145)
T d1aopa4          80 L   80 (145)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase, domains 1 and 3
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5.8e-19  Score=144.49  Aligned_cols=74  Identities=31%  Similarity=0.466  Sum_probs=70.6

Q ss_pred             CCeeeecCCcEEEEEEeCCCCcCHH----HHHHHHHHHHHhCCeEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCC
Q 008202          414 LGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLP  487 (574)
Q Consensus       414 ~G~~~q~dG~~~v~v~vp~Grl~~~----~l~~La~la~~yg~~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~  487 (574)
                      +|||+|.||+|+++++||+|||+++    ++++||+||++|+.+||+|++|||+|++|+++++++|.+.|+++||...
T Consensus         1 ~Gw~~~~dG~~~~gl~v~~GRi~~~~~~~~~~ala~ia~~y~g~irlT~~Qnlil~~V~~~~~~~i~~~L~~~Gl~~~   78 (80)
T d1aopa2           1 IGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNA   78 (80)
T ss_dssp             CEEEECSTTEEEEEECCGGGEECEETTEEHHHHHHHHHHHCSSEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTTCC
T ss_pred             CCccCCCCCCEEEEEEecCccccCCCCHHHHHHHHHHHHHcCCcEEEcCCCCeEecCCCHHHHHHHHHHHHHcCCCCC
Confidence            5999999999999999999999875    8999999999999899999999999999999999999999999999753

>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=9.9e-19  Score=143.43  Aligned_cols=77  Identities=22%  Similarity=0.371  Sum_probs=73.8

Q ss_pred             ccccCCeeeecCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCC
Q 008202          410 FKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLL  486 (574)
Q Consensus       410 ~~~~~G~~~q~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~  486 (574)
                      +.||+||++|+||.|++++.+|+|+++++|++.||++|++||. .||+|++|||+|++|+++++++|.+.|++.||..
T Consensus         2 ~~dh~Gv~~q~dG~~~vri~~p~G~it~~ql~~la~ia~~yg~g~i~lTtrq~l~l~~i~~~~~~~v~~~L~~~Gl~s   79 (80)
T d1zj8a1           2 PIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQS   79 (80)
T ss_dssp             CCCCCEEEECTTSSEEEEEBCBTTEEEHHHHHHHHHHHHHHTCCCEEECTTSCEEEEEECHHHHHHHHHHHHHTTCBS
T ss_pred             CCCcceEeeecCCcEEEEEeccCcEECHHHHHHHHHHHHHhCCCeEEECCCCcEEEcCCCHHHHHHHHHHHHHccCCC
Confidence            4589999999999999999999999999999999999999997 7999999999999999999999999999999864

>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.72  E-value=1.3e-18  Score=154.95  Aligned_cols=77  Identities=25%  Similarity=0.481  Sum_probs=65.2

Q ss_pred             CCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecC-----
Q 008202          491 DPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP-----  565 (574)
Q Consensus       491 ~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~-----  565 (574)
                      ++++|+++||+|+++|++++.||+.++.+|.++|+...   .+  +.+++||||||||+|++|+++||||+|...     
T Consensus         2 ~~~~r~~vaC~G~~~C~~~~~dt~~~a~~l~~~l~~~~---~~--p~k~kI~iSGCpn~C~~~~i~DIG~~G~~~~~~~g   76 (126)
T d2akja3           2 PILMKGLVACTGSQFCGQAIIETKARALKVTEEVQRLV---SV--TRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENG   76 (126)
T ss_dssp             CTTTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHHHHE---EC--SSCCEEEEESSTTCTTCGGGSSEEEEEEEEECTTC
T ss_pred             cccccCCeeCCCcccchhhHHHHHHHHHHHHHHHHhcc---cC--CCceEEEEeCCcchhhhhccCceEEEEEecccccc
Confidence            57889999999999999999999999888888775432   23  478999999999999999999999999621     


Q ss_pred             ---CceEEEE
Q 008202          566 ---NSYQVFQ  572 (574)
Q Consensus       566 ---g~Y~l~l  572 (574)
                         ..|+||+
T Consensus        77 ~~~~~~~v~v   86 (126)
T d2akja3          77 KPCEGADVFV   86 (126)
T ss_dssp             CEEEEEEEEE
T ss_pred             ccccEEEEEe
Confidence               1488886

>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=2.3e-18  Score=157.39  Aligned_cols=82  Identities=23%  Similarity=0.555  Sum_probs=71.3

Q ss_pred             CCCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecC-----
Q 008202          491 DPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP-----  565 (574)
Q Consensus       491 ~~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~-----  565 (574)
                      ++++|+++||+|+++|++++.||+.++..|.+++++.+...+...|.|+||+||||||+|++|+++||||+|+..     
T Consensus         2 ~~~~r~~vaC~G~~~C~~a~~dt~~~a~~l~~~l~~~~~~~~~~lp~k~kI~iSGCpn~C~~~~i~DiG~~g~~~~~~~~   81 (149)
T d1zj8a3           2 SHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHG   81 (149)
T ss_dssp             CHHHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHHTHHHHTTCCSCCCEEEESSTTCTTCGGGSSEEEEEEEEESSSS
T ss_pred             CcccccceeCCCcccchhhHHhHHHHHHHHHHHHHHHhhhhcccCCCceEEEEEcCCcccccccccceeEEeeccccccc
Confidence            578899999999999999999999999999999988776554455689999999999999999999999999531     


Q ss_pred             ---CceEEEE
Q 008202          566 ---NSYQVFQ  572 (574)
Q Consensus       566 ---g~Y~l~l  572 (574)
                         ..|+||+
T Consensus        82 ~~~~g~~i~v   91 (149)
T d1zj8a3          82 GSVEGFQVHL   91 (149)
T ss_dssp             CEEEEEEEEE
T ss_pred             CCCceEEEEe
Confidence               2489886

>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.59  E-value=3.6e-16  Score=129.35  Aligned_cols=71  Identities=31%  Similarity=0.539  Sum_probs=66.8

Q ss_pred             cccccccCCeeeec-CCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHH
Q 008202          407 EWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITT  477 (574)
Q Consensus       407 ~~~~~~~~G~~~q~-dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~  477 (574)
                      .|...+|+|||+|+ +|.|+|++.+|+|+|+++||+.||++|++||. .||+|++|||+|++|+.+++++|.+
T Consensus         2 dw~r~~~~Gv~~Qk~~g~~~vri~~p~G~lt~~ql~~la~ia~~yg~g~irlTtrQni~l~~i~~~~l~~l~~   74 (85)
T d2akja1           2 DWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLN   74 (85)
T ss_dssp             SCCCCCCBEEEECSSTTEEEEEECCGGGEECHHHHHHHHHHHHHHSSSEEEEETTTEEEEEEEETTTHHHHTT
T ss_pred             ccccccceEEeecCCCCeEEEEEEcCCcEeCHHHHHHHHHHHHHHCCCcEEECCCCcEEECCCCHHHHHHHHH
Confidence            46778999999998 69999999999999999999999999999997 7999999999999999999999864

>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.55  E-value=1.7e-15  Score=142.12  Aligned_cols=79  Identities=18%  Similarity=0.272  Sum_probs=68.8

Q ss_pred             CCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeec-CCceEE
Q 008202          492 PLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG-PNSYQV  570 (574)
Q Consensus       492 ~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~-~g~Y~l  570 (574)
                      +.+|+++||+|..+|.++.+||..++.+|.++|.+.+....+  |.|+||+||||||+|++|+++||||+|.. +..|++
T Consensus         2 ~~v~~i~~c~g~~~C~~~~~d~~~~~~al~del~~~~~~~~l--p~k~kI~vSGCpn~C~~~~i~DIGi~G~~~~~g~~~   79 (177)
T d2v4jb3           2 AGVSNIVHTQGWVHCHTPATDASGPVKAIMDEVFEDFQSMRL--PAPVRISLACCINMCGAVHCSDIGVVGIHRGDGVVI   79 (177)
T ss_dssp             SSBCCCBCCCGGGTCSSCSSCSHHHHHHHHHHHHHHHSCCCS--SSCBCEEEESSTTCCSSGGGSSEEEEEECCTCEEEE
T ss_pred             CCcCCeeeCCCccccCCchhhHHHHHHHHHHHHHHHhccccc--ccccceeecCCCCcccccccCCeeEEeEecCCCcee
Confidence            346899999999999999999999999999999888766555  47999999999999999999999999974 445777


Q ss_pred             EE
Q 008202          571 FQ  572 (574)
Q Consensus       571 ~l  572 (574)
                      |+
T Consensus        80 ~~   81 (177)
T d2v4jb3          80 MV   81 (177)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.51  E-value=3.1e-15  Score=140.63  Aligned_cols=75  Identities=13%  Similarity=0.233  Sum_probs=65.6

Q ss_pred             cccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeecCCceEEEE
Q 008202          495 ITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       495 r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~g~Y~l~l  572 (574)
                      .++++|+|.-+|+++++||..++..|.++|.+.+....+  |.|+||+||||||+|++|+++||||+|+.. +|.+++
T Consensus         7 ~~~~~~~g~~~C~~~~~ds~gl~~al~deL~~~~~~~~l--P~k~KI~vSGCpn~C~~~~i~DIGi~G~~~-~~~~~~   81 (179)
T d3c7bb3           7 SNIVHTQGWIHCHTPAIDASGIVKAVMDELYEYFTDHKL--PAMCRISLACCANMCGAVHASDIAIVGIHD-GAAIMV   81 (179)
T ss_dssp             CCCBCCCHHHHCSSCSSCSHHHHHHHHHHHHHHHSSCCB--SSCCCEEEESSTTCCSSGGGCSEEEEEECC-EEEEEE
T ss_pred             cceeeCCCccccCCccccchHHHHHHHHHHHHHHhhccc--cccceeEEeccCCcCCCccccceeeEEecc-CCceec
Confidence            478999999999999999999999999999888866555  479999999999999999999999999854 466654

>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase, domains 1 and 3
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=6.5e-15  Score=120.11  Aligned_cols=73  Identities=16%  Similarity=0.236  Sum_probs=66.3

Q ss_pred             eeEeeccCcccCCccceEEEEEEcCCccccHH----HHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHH
Q 008202          111 GSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQ----LYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR  186 (574)
Q Consensus       111 G~y~Q~~r~~r~~~~~~fmvRiripgG~lt~~----ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~  186 (574)
                      |+++|.|        |.|++++.+|+|+|+.+    |+.+|++||++|+ +++|+|++|||+|++|+.++++++.+.| +
T Consensus         2 Gw~~~~d--------G~~~~gl~v~~GRi~~~~~~~~~~ala~ia~~y~-g~irlT~~Qnlil~~V~~~~~~~i~~~L-~   71 (80)
T d1aopa2           2 GWVKGID--------DNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK-GDFRITANQNLIIAGVPESEKAKIEKIA-K   71 (80)
T ss_dssp             EEEECST--------TEEEEEECCGGGEECEETTEEHHHHHHHHHHHCS-SEEEECTTSCEEEEEEEGGGHHHHHHHH-H
T ss_pred             CccCCCC--------CCEEEEEEecCccccCCCCHHHHHHHHHHHHHcC-CcEEEcCCCCeEecCCCHHHHHHHHHHH-H
Confidence            7888865        68999999999999875    8999999999997 8999999999999999999999999999 8


Q ss_pred             HcCCCCC
Q 008202          187 SMGSTLG  193 (574)
Q Consensus       187 ~~g~t~~  193 (574)
                      +.|+..+
T Consensus        72 ~~Gl~~~   78 (80)
T d1aopa2          72 ESGLMNA   78 (80)
T ss_dssp             HTTTTCC
T ss_pred             HcCCCCC
Confidence            8886543

>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: DsrA/DsrB N-terminal-domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.50  E-value=1.2e-14  Score=128.27  Aligned_cols=70  Identities=21%  Similarity=0.203  Sum_probs=62.2

Q ss_pred             ceEEEEEEcCCcc-ccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCC
Q 008202          126 YSFMLRTKNPCGK-VSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACG  196 (574)
Q Consensus       126 ~~fmvRiripgG~-lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~g  196 (574)
                      |.-+.+||+++++ +|++|+|.||+||++||+|++|+||||||||+++.++++++++++| ++.|+..+++|
T Consensus        58 Gd~~~tVRv~~~RllS~~~lR~iadIAdkYg~G~lrfTtRqnIEf~~v~~~~v~~L~~eL-~~~g~~~Gg~G  128 (134)
T d2v4jb2          58 GDKVYTVRVGAARLMSITHIREMCDIADKYCGGHLRFTTRNNVEFMVADEASLKALKEDL-ASRKFDGGSLK  128 (134)
T ss_dssp             SCEEEEEEECCCSEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHH-HHCBCTTSCBS
T ss_pred             CCEEEEEECCCCcccCHHHHHHHHHHHHHHCCCceeecCCCceeEecCCHHHHHHHHHHH-HHCCCCCCCCC
Confidence            3456666667766 6999999999999999999999999999999999999999999999 88888777766

>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: DsrA/DsrB N-terminal-domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.46  E-value=3.9e-14  Score=122.40  Aligned_cols=72  Identities=19%  Similarity=0.301  Sum_probs=66.2

Q ss_pred             ceEEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEcCCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCCCCCC
Q 008202          126 YSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDL  198 (574)
Q Consensus       126 ~~fmvRiripgG~lt~~ql~~la~iA~~yG~g~i~lTtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a~gd~  198 (574)
                      -.|+||+..| ..+|++|+|.||+||++||.|++|+||||||||+++.++++++++++|.+..|+++|++|+.
T Consensus        47 ~~~tVR~g~p-rl~S~~~iR~iadIAdKY~~G~lrfTtR~NIEf~~~~~e~v~~l~~eL~~~~gfpvGGTG~~  118 (119)
T d3c7bb2          47 VIYVVRFGTP-RLLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQERVGFPCGGTWDA  118 (119)
T ss_dssp             EEEEEEECCC-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESCGGGHHHHHHHHHHHHCCCBCCCEET
T ss_pred             EEEEEecCCc-ccccHHHHHHHHHHHHHhCcceEEeecCCCceeecCCHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            4799999888 47899999999999999999999999999999999999999999999955679999998864

>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=2.3e-13  Score=123.97  Aligned_cols=66  Identities=20%  Similarity=0.212  Sum_probs=62.7

Q ss_pred             CCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCC
Q 008202          421 DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLL  486 (574)
Q Consensus       421 dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~  486 (574)
                      +|+|++++.+|+|+++++|++.|++||++||. .+|+|++|||+|++|+.+++++|.+.|.++||.+
T Consensus        82 ~~~fmvRvr~p~G~lt~~Ql~~la~ia~~yg~g~i~iTtRQ~iql~gI~~~~l~~i~~~L~~~GL~t  148 (152)
T d1zj8a2          82 AKYFMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQT  148 (152)
T ss_dssp             EEEEEEEEBCGGGEECHHHHHHHHHHHHHHSTTEEEECTTSCEEEEEECGGGHHHHHHHHHTTTCBC
T ss_pred             CceEEEEEecCCCEecHHHHHHHHHHHHHhCCCCccccCCceEEecCCCHHHHHHHHHHHHHcCCCc
Confidence            35699999999999999999999999999997 7999999999999999999999999999999865

>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Sulfite reductase, domains 1 and 3
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=2.1e-13  Score=106.72  Aligned_cols=62  Identities=19%  Similarity=0.268  Sum_probs=53.5

Q ss_pred             EEEEEeCCCCcCHHHHHHHHHHHHHhC-C-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCC
Q 008202          425 FCGLHVDNGRIAGKMKKTLREIIEKYN-L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLL  486 (574)
Q Consensus       425 ~v~v~vp~Grl~~~~l~~La~la~~yg-~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~  486 (574)
                      ++++++|+|+++++|++.||++|++|| . .+|+|++|||+|++|+.++++++.+.|++.||.+
T Consensus         1 MiRiriPgG~it~~ql~~la~ia~kyg~~g~i~~TtRQ~iql~~v~~~~l~~v~~~L~~~GL~t   64 (65)
T d1aopa1           1 LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDA   64 (65)
T ss_dssp             CEECCCGGGEEEHHHHHHHHHHHHHHBSSCCEEECTTSCEEECCBC-----CHHHHHHHTTCCC
T ss_pred             CEEEecCCCCcCHHHHHHHHHHHHHhcCCCceeecCcceEEeCCCCHHHHHHHHHHHHHcCCCc
Confidence            478999999999999999999999997 3 6999999999999999999999999999999864

>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Dissimilatory sulfite reductase subunit alpha, DsrA
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.33  E-value=2.9e-13  Score=127.56  Aligned_cols=75  Identities=19%  Similarity=0.343  Sum_probs=61.5

Q ss_pred             cccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCc-ccEEEEeecCCceEEEE
Q 008202          495 ITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYM-AELGLVGDGPNSYQVFQ  572 (574)
Q Consensus       495 r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~-aDIGlvG~~~g~Y~l~l  572 (574)
                      |+++||+|+.+|++|++||+.++.+|.+++.+......+  |.|+||+||||||+|++++. +|+|++|+. ..|.+|+
T Consensus         4 Rt~~AC~G~~~C~~a~~dt~~la~~L~~~f~~~~~~~~~--p~k~ki~vSGCpn~C~~~~~~~d~gi~~~~-~~~~~~~   79 (185)
T d3c7ba3           4 RTPSACMGPALCEFACYDTLELCYDLTMTYQDELHRPMW--PYKFKIKCAGCPNDCVASKARSDFAIIGTW-RGATILI   79 (185)
T ss_dssp             CCCEECCGGGTCTTCSSCHHHHHHHHHHHTHHHHHSCCS--SSCBCEEEESSTTCTTCHHHHCSEEEEEEE-EEEEEEE
T ss_pred             CCcCCCCCcccccchhhhHHHHHHHHHHHHhhhhccccc--ccccccccccCCccchhhhhhccceEeccc-ccceEee
Confidence            689999999999999999999988777776655444444  57999999999999999875 799999974 4477764

>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Dissimilatory sulfite reductase subunit alpha, DsrA
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.31  E-value=5.7e-13  Score=125.84  Aligned_cols=79  Identities=13%  Similarity=0.309  Sum_probs=66.0

Q ss_pred             CCccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCC-cccEEEEeecCCceEE
Q 008202          492 PLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPY-MAELGLVGDGPNSYQV  570 (574)
Q Consensus       492 ~~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~-~aDIGlvG~~~g~Y~l  570 (574)
                      +.+|+++||+|+.+|++|+.||..++.+|.+++.+.+....+  |.|+||.+|||||+|+.+. .+|||++|+..+.+.+
T Consensus         2 ~~vRtv~AC~G~~~C~~g~~Dt~~la~~L~~~f~~~~~~~~~--p~K~Ki~vsGCpn~C~~a~~~~Digiig~~~~g~~~   79 (189)
T d2v4ja3           2 SNLRTPESCLGKSRCEFACYDSQAACYELTMEYQDELHRPAF--PYKFKFKFDACPNGCVASIARSDFSVIGTWKRGASI   79 (189)
T ss_dssp             SSBCCCEECCGGGSCTTCSSCHHHHHHHHHHHTHHHHHSCCS--SSCBCEEEESSTTCTTCHHHHCSEEEEEEESEEEEE
T ss_pred             CCCCCCCCCCCcccccchHhhHHHHHHHHHHHHhhccccccc--ccccccccCccccccccchhcccceEEEeeccCcee
Confidence            457899999999999999999999887777777665544444  5799999999999999996 5899999997666776


Q ss_pred             EE
Q 008202          571 FQ  572 (574)
Q Consensus       571 ~l  572 (574)
                      |.
T Consensus        80 ~~   81 (189)
T d2v4ja3          80 LC   81 (189)
T ss_dssp             EE
T ss_pred             ee
Confidence            64

>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: Duplicated SiR/NiR-like domains 1 and 3
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.30  E-value=5.9e-13  Score=121.21  Aligned_cols=77  Identities=22%  Similarity=0.273  Sum_probs=71.3

Q ss_pred             ccCCeeeec---CCcEEEEEEeCCCCcCHHHHHHHHHHHHHhC-C-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCC
Q 008202          412 SHLGWHEQG---DGGLFCGLHVDNGRIAGKMKKTLREIIEKYN-L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLL  486 (574)
Q Consensus       412 ~~~G~~~q~---dG~~~v~v~vp~Grl~~~~l~~La~la~~yg-~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~  486 (574)
                      .++|++.|+   .|+|++++.+|+|+++++|++.|++||++|| . .+++|++|||+|++|+.+++++|.+.|.++||.+
T Consensus        70 k~~G~y~qr~~~~g~FMvRlr~pgG~lt~~Ql~~ladiA~~yg~~G~l~lTtRQniql~gI~~~dl~~i~~~L~~~GL~t  149 (153)
T d2akja2          70 KWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGLESVGLTS  149 (153)
T ss_dssp             GGGTEEECHHHHTTCEEEECCCGGGEEEHHHHHHHHHHHHTTGGGCCEEECTTSCEEEEEECGGGHHHHHHHHHTTTCCC
T ss_pred             HHhccccccCCCCCeEEEEeeCCCeEeCHHHHHHHHHHHHHHCCCCcEeeCCCceEEecCCCHHHHHHHHHHHHHcCCCc
Confidence            478999875   4899999999999999999999999999999 4 5999999999999999999999999999999986


Q ss_pred             CC
Q 008202          487 PR  488 (574)
Q Consensus       487 ~~  488 (574)
                      ..
T Consensus       150 ~~  151 (153)
T d2akja2         150 LQ  151 (153)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Ferredoxin--nitrite reductase, NIR
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.20  E-value=5.8e-12  Score=117.02  Aligned_cols=79  Identities=11%  Similarity=0.052  Sum_probs=62.0

Q ss_pred             ccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHh-c-CCCCCCceEEEEecCCCcCCCCCcccEEEEeecC---Cce
Q 008202          494 NITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEK-V-GLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP---NSY  568 (574)
Q Consensus       494 ~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~-~-gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~~---g~Y  568 (574)
                      +||+++||++..|+.++.||..++.+|.+.+...... . ...+|.||||+||||||+|++++++||||+|...   .+|
T Consensus         4 vRNv~~~P~aGv~~~e~~D~~pla~~l~~~~~~~~~~~~~~~~LPrKfKi~isGc~~~c~~~~~~DIG~~~~~~~g~~gf   83 (171)
T d2akja4           4 VRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLYEHPHINDLAYMPATKNGKFGF   83 (171)
T ss_dssp             BCCCBCCTTTTTCTTCSSCCHHHHHHHHHHHTTTTTCCGGGSCCSSCBCEEECCCTTCTTCGGGSSEEEEEEESSSSEEE
T ss_pred             CccccCCCcCCCCcccccCHHHHHHHHHHHHHhccccchhhhhCchhceeeecCCccceeeeeecceEEEEeccCCcceE
Confidence            5899999999999999999998876666555322110 0 0124589999999999999999999999999743   269


Q ss_pred             EEEE
Q 008202          569 QVFQ  572 (574)
Q Consensus       569 ~l~l  572 (574)
                      ++|+
T Consensus        84 ~v~v   87 (171)
T d2akja4          84 NLLV   87 (171)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9887

>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: DsrA/DsrB N-terminal-domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=98.98  E-value=6.2e-10  Score=97.76  Aligned_cols=71  Identities=17%  Similarity=0.180  Sum_probs=61.6

Q ss_pred             eecCCcEEEEEEeCCCC-cCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHHCCCCCCC
Q 008202          418 EQGDGGLFCGLHVDNGR-IAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPR  488 (574)
Q Consensus       418 ~q~dG~~~v~v~vp~Gr-l~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~~Gl~~~~  488 (574)
                      ....|.-.++|++..+| ++.+|++.|||||++|+. .+|+|++|||+|.+++++++++|.++|++.|+..++
T Consensus        54 v~esGd~~~tVRv~~~RllS~~~lR~iadIAdkYg~G~lrfTtRqnIEf~~v~~~~v~~L~~eL~~~g~~~Gg  126 (134)
T d2v4jb2          54 VAESGDKVYTVRVGAARLMSITHIREMCDIADKYCGGHLRFTTRNNVEFMVADEASLKALKEDLASRKFDGGS  126 (134)
T ss_dssp             EETTSCEEEEEEECCCSEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHHHHCBCTTSC
T ss_pred             ecCCCCEEEEEECCCCcccCHHHHHHHHHHHHHHCCCceeecCCCceeEecCCHHHHHHHHHHHHHCCCCCCC
Confidence            34455556666777777 499999999999999998 699999999999999999999999999999998754

>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase NirA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=2.2e-10  Score=105.54  Aligned_cols=76  Identities=9%  Similarity=0.152  Sum_probs=59.0

Q ss_pred             CccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcCCCCCcccEEEEeec--CC--ce
Q 008202          493 LNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--PN--SY  568 (574)
Q Consensus       493 ~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~~~gl~~~~~ikI~iSGCpn~Ca~~~~aDIGlvG~~--~g--~Y  568 (574)
                      ..||+|+||++..|+.++.|+..++.++.+.+...-+...|  |.||||.||||++.|.  +++||||+|..  .+  +|
T Consensus         3 ~vRNV~~~P~ag~~~~e~~D~~p~a~~i~~~~~~~~~~~~L--PrKfki~vsGc~~~c~--~~~Dig~~~~~~~~g~~Gf   78 (165)
T d1zj8a4           3 CPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYIGKPDFADL--PRKYKTAISGLQDVAH--EINDVAFIGVNHPEHGPGL   78 (165)
T ss_dssp             SEEEEEECTTTTTCTTCSCCTHHHHHHHHHHHTTSGGGSSC--SSCEEEEEESSSCSCG--GGSSEEEEEEEETTTEEEE
T ss_pred             CCcccCcCCcccCCcccccCCHHHHHHHHHHHhcChhhhcc--cccccccccCchHHHH--hcCcceEEEEeccCCcceE
Confidence            46899999999999999999998876665555432222334  5899999999999995  56899999952  22  49


Q ss_pred             EEEE
Q 008202          569 QVFQ  572 (574)
Q Consensus       569 ~l~l  572 (574)
                      +||+
T Consensus        79 ~v~v   82 (165)
T d1zj8a4          79 DLWV   82 (165)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nitrite and sulphite reductase 4Fe-4S domain-like
superfamily: Nitrite and sulphite reductase 4Fe-4S domain-like
family: Nitrite and sulphite reductase 4Fe-4S domain-like
domain: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=2.3e-09  Score=101.11  Aligned_cols=79  Identities=11%  Similarity=0.048  Sum_probs=59.1

Q ss_pred             CccccccCCCCCCCccchhHHHhhHHHHHHHHHHHHH---h-----------------cCCCCCCceEEEEecCCCcCCC
Q 008202          493 LNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFE---K-----------------VGLKYNESVVIRVTGCPNGCAR  552 (574)
Q Consensus       493 ~~r~~~AC~G~~~C~~al~et~~~a~~l~~~l~~~l~---~-----------------~gl~~~~~ikI~iSGCpn~Ca~  552 (574)
                      ..||+|||+ +|+++-...|+..++.+|.+.+...-.   +                 -+..+|.||||.|||||+.|+.
T Consensus         3 v~RNV~~~~-~~~~~~~~~d~~~~A~~i~~~~~~~~~~y~ei~~~~~~~~~~~~~p~Y~~~~LPRKFKIavsgc~~nc~~   81 (197)
T d1aopa3           3 MNRNVLCTS-NPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDID   81 (197)
T ss_dssp             CBCCCEECS-SCSSTTHHHHHHHHHHHHHHHTCC--------------------------CCCSSCBCEEEECTTBCTTC
T ss_pred             CCccccCCC-CccCchhHHHHHHHHHHHHHHhccccchHHHHHhccccccccccCcccccccCCcceEEEEecCccccee
Confidence            358999888 899999999998888777665421100   0                 0111368999999999999999


Q ss_pred             CCcccEEEEeecCC----ceEEEE
Q 008202          553 PYMAELGLVGDGPN----SYQVFQ  572 (574)
Q Consensus       553 ~~~aDIGlvG~~~g----~Y~l~l  572 (574)
                      +++.||||++...+    +|+||+
T Consensus        82 ~~~nDiG~ia~~~~g~~~Gf~V~v  105 (197)
T d1aopa3          82 LHANDMNFVAIAENGKLVGFNLLV  105 (197)
T ss_dssp             GGGSSEEEEEEEETTEEEEEEEEE
T ss_pred             eeecceEEEEEEeCCcceEEEEEE
Confidence            99999999986433    489886

>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: DsrA/DsrB N-terminal-domain-like
domain: Dissimilatory sulfite reductase subunit beta, DsrB
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.75  E-value=6.2e-09  Score=89.43  Aligned_cols=68  Identities=15%  Similarity=0.139  Sum_probs=58.6

Q ss_pred             cCCcEEEEEEeCCCCcCHHHHHHHHHHHHHhCC-eEEEccCCcEEEecCCcCCHHHHHHHHHH-CCCCCCC
Q 008202          420 GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQ-AGLLLPR  488 (574)
Q Consensus       420 ~dG~~~v~v~vp~Grl~~~~l~~La~la~~yg~-~irlT~~Qnlil~~I~~~~~~~l~~~L~~-~Gl~~~~  488 (574)
                      +|..|.|++..| ..++.++++.||+||++|+. .+|+|++|||+|..++++++++|.++|++ .|+..+.
T Consensus        45 g~~~~tVR~g~p-rl~S~~~iR~iadIAdKY~~G~lrfTtR~NIEf~~~~~e~v~~l~~eL~~~~gfpvGG  114 (119)
T d3c7bb2          45 GDVIYVVRFGTP-RLLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQERVGFPCGG  114 (119)
T ss_dssp             SCEEEEEEECCC-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESCGGGHHHHHHHHHHHHCCCBCC
T ss_pred             CCEEEEEecCCc-ccccHHHHHHHHHHHHHhCcceEEeecCCCceeecCCHHHHHHHHHHHHhcCCCCCCC
Confidence            455666777655 35699999999999999998 69999999999999999999999999986 6887765

>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: DsrA/DsrB N-terminal-domain-like
domain: Dissimilatory sulfite reductase subunit alpha, DsrA
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.24  E-value=0.00024  Score=63.00  Aligned_cols=73  Identities=15%  Similarity=0.252  Sum_probs=63.4

Q ss_pred             ccceEEEEEEcCCcc-ccHHHHHHHHHHHHHhCCCeEEc-CCCCcEEEcCCCcCCHHHHHHHHHH-HcCCCCCCCC
Q 008202          124 KSYSFMLRTKNPCGK-VSNQLYLTMDDLADQFGIGTLRL-TTRQTFQLHGVLKKDLKTVMRSIIR-SMGSTLGACG  196 (574)
Q Consensus       124 ~~~~fmvRiripgG~-lt~~ql~~la~iA~~yG~g~i~l-TtRQniqL~gI~~~~l~~i~~~L~~-~~g~t~~a~g  196 (574)
                      -.....+||..|.|. .|.+-||.|+||.++||.|...+ .+-..|.|.|...+++++++.+|.. ++|..++..|
T Consensus        91 v~hFHT~RVnqPsg~fYtT~~LR~LcDiWek~GSGLtNmHGsTGDII~lGt~T~~le~~F~eLt~~~~g~DLGGSG  166 (166)
T d3c7ba2          91 VEHFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGTRSEYLQPCFEDLGNLEIPFDIGGSG  166 (166)
T ss_dssp             GSBCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEEEECGGGHHHHHHHHHTSSSCCCBCCCS
T ss_pred             ccccccccccCCCccccChHHHHHHHHHHHhccccceecCCCCCCEEEecCChHHHHHHHHHHhcccCCCCCCCCC
Confidence            356889999999996 59999999999999999999888 5668899999999999999999954 5677777654

>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: DsrA/DsrB N-terminal-domain-like
domain: Dissimilatory sulfite reductase subunit alpha, DsrA
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=97.08  E-value=0.0005  Score=61.04  Aligned_cols=71  Identities=20%  Similarity=0.308  Sum_probs=62.5

Q ss_pred             ccceEEEEEEcCCcc-ccHHHHHHHHHHHHHhCCCeEEc-CCCCcEEEcCCCcCCHHHHHHHHHHHcCCCCCC
Q 008202          124 KSYSFMLRTKNPCGK-VSNQLYLTMDDLADQFGIGTLRL-TTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGA  194 (574)
Q Consensus       124 ~~~~fmvRiripgG~-lt~~ql~~la~iA~~yG~g~i~l-TtRQniqL~gI~~~~l~~i~~~L~~~~g~t~~a  194 (574)
                      ......+||..|.|. .|.+-||.|+||.++||.|.+.+ .+-.+|.|.|...+++.+++.+|..++|..++.
T Consensus        93 v~~FHT~RVnqPsG~fYtT~~LR~LcDiWek~GSGLtNmHGsTGDiillGt~T~~le~~F~elt~~~g~DLGG  165 (166)
T d2v4ja2          93 VAHFHTVRVAQPSGKYYSADYLRQLCDIWDLRGSGLTNMHGSTGDIVLLGTQTPQLEEIFFELTHNLNTDLGG  165 (166)
T ss_dssp             GSBCCEEEECCCTTCEEEHHHHHHHHHHHHHHSCSEEESCCTTSCEEEECCCHHHHHHHHHHHHHTSCCCBCC
T ss_pred             ccccccccccCCCcccccHHHHHHHHHHHhhhcCCccccCCCCCCEEEecCCchhhHHHHHHHHhccCCCCCC
Confidence            345678999999996 59999999999999999999888 667889999999999999999997778877654

>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: DsrA/DsrB N-terminal-domain-like
domain: Dissimilatory sulfite reductase subunit alpha, DsrA
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.18  E-value=0.003  Score=55.83  Aligned_cols=67  Identities=15%  Similarity=0.167  Sum_probs=55.9

Q ss_pred             CcEEEEEEeCCCCc-CHHHHHHHHHHHHHhCCeE--EEccCCcEEEecCCcCCHHHHHHHHH--HCCCCCCC
Q 008202          422 GGLFCGLHVDNGRI-AGKMKKTLREIIEKYNLNV--RITPNQNIILCDIRKAWKRPITTALA--QAGLLLPR  488 (574)
Q Consensus       422 G~~~v~v~vp~Grl-~~~~l~~La~la~~yg~~i--rlT~~Qnlil~~I~~~~~~~l~~~L~--~~Gl~~~~  488 (574)
                      ..+.+||..|.|.+ +.+.|+.|+||+++||+.+  .-.+..+|+|.+.+.++++.+..+|.  +.|++.+.
T Consensus        93 hFHT~RVnqPsg~fYtT~~LR~LcDiWek~GSGLtNmHGsTGDII~lGt~T~~le~~F~eLt~~~~g~DLGG  164 (166)
T d3c7ba2          93 HFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGTRSEYLQPCFEDLGNLEIPFDIGG  164 (166)
T ss_dssp             BCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEEEECGGGHHHHHHHHHTSSSCCCBCC
T ss_pred             ccccccccCCCccccChHHHHHHHHHHHhccccceecCCCCCCEEEecCChHHHHHHHHHHhcccCCCCCCC
Confidence            34578999999988 6889999999999999864  23467899999999999999999997  45776654

>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nitrite/Sulfite reductase N-terminal domain-like
family: DsrA/DsrB N-terminal-domain-like
domain: Dissimilatory sulfite reductase subunit alpha, DsrA
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=96.04  E-value=0.0034  Score=55.57  Aligned_cols=66  Identities=12%  Similarity=0.062  Sum_probs=55.5

Q ss_pred             cEEEEEEeCCCCc-CHHHHHHHHHHHHHhCCeE-E-EccCCcEEEecCCcCCHHHHHHHHH-HCCCCCCC
Q 008202          423 GLFCGLHVDNGRI-AGKMKKTLREIIEKYNLNV-R-ITPNQNIILCDIRKAWKRPITTALA-QAGLLLPR  488 (574)
Q Consensus       423 ~~~v~v~vp~Grl-~~~~l~~La~la~~yg~~i-r-lT~~Qnlil~~I~~~~~~~l~~~L~-~~Gl~~~~  488 (574)
                      .+.+||..|.|.+ +.+.|+.|+||+++||+.+ - -.+..+|+|.+.+.++++++..+|. +.|++.+.
T Consensus        96 FHT~RVnqPsG~fYtT~~LR~LcDiWek~GSGLtNmHGsTGDiillGt~T~~le~~F~elt~~~g~DLGG  165 (166)
T d2v4ja2          96 FHTVRVAQPSGKYYSADYLRQLCDIWDLRGSGLTNMHGSTGDIVLLGTQTPQLEEIFFELTHNLNTDLGG  165 (166)
T ss_dssp             CCEEEECCCTTCEEEHHHHHHHHHHHHHHSCSEEESCCTTSCEEEECCCHHHHHHHHHHHHHTSCCCBCC
T ss_pred             cccccccCCCcccccHHHHHHHHHHHhhhcCCccccCCCCCCEEEecCCchhhHHHHHHHHhccCCCCCC
Confidence            3469999999988 6899999999999999864 2 3467899999999999999998885 67887653