Citrus Sinensis ID: 008206

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570----
MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccHHcccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHcccccccccccHHHHHHHHHHccccccc
ccccEEEEcccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHcccHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHEcccccc
mrdlksvlsskestkadvnrrssnyhpsiwgdhfinvssnekytnTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDShvngncdvnydhnnDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLShlstplvdqvehsleiplhrgmprleARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILgvyfepkystTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKlvnkeplccMYYAKEAIKGLVKAYFVEAkwfhakyvptfeecvenstmssgypMLAVEALVGLEDMAITKRALDWaisvpkiirsssliarldddvhtykveqergdapssvECYVQQYGVSEEEACNKIKGMVEIEWMNineeiqdpnhpplqwllpslNLARMMVVLYQngdgytnstgktkdriasllvdplpm
mrdlksvlsskestkadvnrrssnyhpsiwgdhfinvsSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALdwaisvpkiirsssliarlDDDVHTYKVeqergdapssvECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGdgytnstgktkdriasllvdplpm
MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFsrkhlksllshlsTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
**************************PSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVE********SVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYT********************
*************************HPSIWGDHFINVSS***********RFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYK*****GDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
********************RSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKV*********SVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
***LKSVLS*K*****DVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
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MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTxxxxxxxxxxxxxxxxxxxxxNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query574 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.952 0.982 0.485 1e-161
F6M8H7562 Probable sesquiterpene sy N/A no 0.940 0.960 0.492 1e-155
F6M8H4559 Probable sesquiterpene sy N/A no 0.968 0.994 0.488 1e-154
B5A435559 Sesquiterpene synthase OS N/A no 0.968 0.994 0.486 1e-153
E3W207559 Sesquiterpene synthase OS N/A no 0.968 0.994 0.490 1e-152
D0VMR6547 Delta-guaiene synthase 1 N/A no 0.928 0.974 0.472 1e-151
F6M8H5562 Probable sesquiterpene sy N/A no 0.940 0.960 0.487 1e-150
Q43714555 (+)-delta-cadinene syntha N/A no 0.951 0.983 0.482 1e-150
D0VMR7547 Delta-guaiene synthase 2 N/A no 0.928 0.974 0.466 1e-150
F6M8H6562 Probable sesquiterpene sy N/A no 0.940 0.960 0.487 1e-150
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  569 bits (1466), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/570 (48%), Positives = 399/570 (70%), Gaps = 23/570 (4%)

Query: 7   VLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS- 65
           +L+  ++   +V RR +N+HPSIWGDHF++ +S    T+  +++  + LK E+ K+L++ 
Sbjct: 9   LLAPSKNLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEEVRKMLMAA 68

Query: 66  -NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYI 124
            +++A K L     +++ +QRLGVAYHFE+EI E L+ ++D  V            D+Y 
Sbjct: 69  DDDSAQKLL-----LIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSA-------EEDVYT 116

Query: 125 VALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 184
            +LRFRLLRQ GY VS D+F  F+D +G FK  L++D +G+L LYEA++ RV GE+IL+E
Sbjct: 117 ASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDE 176

Query: 185 ACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELIL 244
           A  F+  HL+S   H S PL +QV H+L+ P+ +G+PRLEAR Y S+Y+AD+S  N+ +L
Sbjct: 177 ALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDS-HNKALL 235

Query: 245 ELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTT 304
           +LAKLDFNLLQ LH+ ELS+IS WWKD+DFA KLPFARDR+VECYFWILGVYFEP++   
Sbjct: 236 KLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFA 295

Query: 305 RKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCY 364
           R+ +TK+IA+ S+IDDIYDVYGTLEEL+LFT A+E       RW++ A ++LP+YM+VCY
Sbjct: 296 RRILTKVIAMTSIIDDIYDVYGTLEELELFTEAVE-------RWDISAIDQLPEYMRVCY 348

Query: 365 FALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENST 424
            ALL V  E+E+++  +     +YYAKEA+K  V+AY+ EAKW   + +PT EE +  + 
Sbjct: 349 QALLYVYSEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVAL 408

Query: 425 MSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD 484
           ++S Y MLA  + VG+ D A+TK + DW  S PKI+R+S+++ RL DD+  +K EQ+RG 
Sbjct: 409 VTSAYSMLATTSFVGMGD-AVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQKRGH 467

Query: 485 APSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMV 544
             S+VECY++Q+G SE+E  N+    V   W +INEE   P   P+  L+  LNLAR++ 
Sbjct: 468 VASAVECYMKQHGASEQETPNEFPQPVREAWKDINEECLIPTAVPMPILMRVLNLARVID 527

Query: 545 VLYQNGDGYTNSTGKTKDRIASLLVDPLPM 574
           V+Y+N DGYT+     KD + S+L+DP+P+
Sbjct: 528 VIYKNEDGYTHFGAVLKDFVTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|D0VMR6|DGUS1_AQUCR Delta-guaiene synthase 1 OS=Aquilaria crassna GN=C2 PE=1 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description
>sp|D0VMR7|DGUS2_AQUCR Delta-guaiene synthase 2 OS=Aquilaria crassna GN=C3 PE=1 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.952 0.982 0.487 1e-161
147856860557 hypothetical protein VITISV_030783 [Viti 0.952 0.982 0.487 1e-160
147828675557 hypothetical protein VITISV_013313 [Viti 0.952 0.982 0.485 1e-160
75223414557 RecName: Full=(-)-germacrene D synthase 0.952 0.982 0.485 1e-159
225461172557 PREDICTED: (-)-germacrene D synthase [Vi 0.952 0.982 0.482 1e-159
347664489557 (E)-beta-caryophyllene synthase [Vitis v 0.952 0.982 0.482 1e-157
315134533556 sesquiterpene synthase [Toona sinensis] 0.944 0.974 0.507 1e-156
392306394556 sesquiterpene synthase [Toona sinensis] 0.944 0.974 0.506 1e-155
41058926561 (-)-germacrene D synthase [Populus trich 0.965 0.987 0.483 1e-155
60266878565 germacrene-D synthase [Actinidia delicio 0.959 0.975 0.479 1e-154
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 278/570 (48%), Positives = 401/570 (70%), Gaps = 23/570 (4%)

Query: 7   VLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS- 65
           +L+  ++   +V RR +N+HPSIWGDHF++ +S    T+  +++  + LK E+ K+L++ 
Sbjct: 9   LLAPSKNLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEEVRKMLMAA 68

Query: 66  -NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYI 124
            +++A K L     +++ +QRLGVAYHFE+EI E L+ ++D  V            D+Y 
Sbjct: 69  DDDSAQKLL-----LIDAIQRLGVAYHFESEIDEVLKHMFDGSVVSA-------EEDVYT 116

Query: 125 VALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEE 184
            +LRFRLLRQ GY VS D+F  F+D +G FK  L++D +G+L LYEA++ RV GE+IL+E
Sbjct: 117 ASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDE 176

Query: 185 ACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELIL 244
           A  F+  HL+S   H S PL +QV H+L+ P+ +G+PRLEAR Y S+Y+AD+S  N+ +L
Sbjct: 177 ALAFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDS-HNKALL 235

Query: 245 ELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTT 304
           +LAKLDFNLLQ LH+ ELS+IS WWKD+DFA KLPFARDR+VECYFWILGVYFEP++   
Sbjct: 236 KLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFA 295

Query: 305 RKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCY 364
           R+ +TK+IA+ S+IDDIYDVYGTLEEL+LFT A+E       RW++ A ++LP+YM+VCY
Sbjct: 296 RRILTKVIAMTSIIDDIYDVYGTLEELELFTEAVE-------RWDISAIDQLPEYMRVCY 348

Query: 365 FALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENST 424
            ALL V  E+E+++  +     +YYAKEA+K  V+AY+ EAKW   + +PT EE +  + 
Sbjct: 349 QALLYVYSEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVAL 408

Query: 425 MSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD 484
           ++S Y MLA  + VG+ D A+TK + DW  S PKI+R+S+++ RL DD+ ++K EQ+RG 
Sbjct: 409 VTSAYSMLATTSFVGMGD-AVTKESFDWIFSKPKIVRASAIVCRLMDDMVSHKFEQKRGH 467

Query: 485 APSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMV 544
             S+VECY++Q+G SE+E  N+    V   W +INEE   P   P+  L+  LNLAR++ 
Sbjct: 468 VASAVECYMKQHGASEQETHNEFHKQVRDAWKDINEECLIPTAVPMPILMRVLNLARVID 527

Query: 545 VLYQNGDGYTNSTGKTKDRIASLLVDPLPM 574
           V+Y+N DGYT+S    KD + S+L+DP+P+
Sbjct: 528 VIYKNEDGYTHSGTVLKDFVTSMLIDPVPI 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|315134533|dbj|BAJ46125.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|392306394|dbj|BAM24405.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|41058926|gb|AAR99061.1| (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|60266878|gb|AAX16121.1| germacrene-D synthase [Actinidia deliciosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query574
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.968 0.994 0.479 5.6e-139
UNIPROTKB|D0VMR6547 C2 "Delta-guaiene synthase 1" 0.928 0.974 0.457 1.8e-133
UNIPROTKB|D0VMR7547 C3 "Delta-guaiene synthase 2" 0.928 0.974 0.452 4.8e-133
UNIPROTKB|D0VMR8547 C4 "Delta-guaiene synthase 3" 0.928 0.974 0.456 1e-132
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.939 0.98 0.458 5.9e-128
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.947 0.952 0.441 7.2e-123
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.949 0.981 0.417 6.2e-117
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.954 0.971 0.404 1.1e-112
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.965 0.980 0.396 1.8e-112
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.928 0.962 0.417 7.6e-112
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
 Identities = 275/573 (47%), Positives = 387/573 (67%)

Query:     1 MRDLKSVLSSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIE 60
             M + K  +SS  + K +++R  +N+ PSIWGD FIN +  ++    + E++ E LK ++ 
Sbjct:     1 MENQKVPISSVPNLK-ELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVR 59

Query:    61 KLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIY-DSHVNGNCDVNYDHN 119
             + L +  T  K L+++  I++  QRLG+AYHFENEI+E+L+ IY  ++V  NC   +  +
Sbjct:    60 RELAA--TVDKPLQQL-NIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNC---FQGS 113

Query:   120 NDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGE 179
             +DLY VAL FRLLRQ GYKVS D+F KFRD +  FK  L  DAKGLL LYEA++L V GE
Sbjct:   114 HDLYSVALWFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGE 173

Query:   180 NILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTR 239
              +L++A EF              PL +QV H+L  PL +G+PRLEA  +  IYEA +S  
Sbjct:   174 EMLDDALEFAKTRLESIVNHLNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDS-H 232

Query:   240 NELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEP 299
             N+ +L+LAKLDFNLLQ+LH+ ELS+++RWWK +DFA K PFARDRLVE YFW+LGVYFEP
Sbjct:   233 NKALLKLAKLDFNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVLGVYFEP 292

Query:   300 KYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKY 359
             +YS  RK + K+  + S IDDIYD YGTL+EL+LFT A++       RW+V + ++LP+Y
Sbjct:   293 QYSLARKIIIKVFTMISTIDDIYDAYGTLDELELFTKAMQ-------RWDVGSLDQLPEY 345

Query:   360 MQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEEC 419
             M+ CY ++LDV  E+E+++ N+  L  M+YAKE +K LV+ Y  EAKW H KYVPTFEE 
Sbjct:   346 MKPCYKSILDVYNEIEEEMDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEY 405

Query:   420 VENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVE 479
             +  + ++SGY  L   + +G+ ++A +K A DW  S P +I +S  + RL DD+ ++K E
Sbjct:   406 MPVALVTSGYTFLTTISYLGMGEIA-SKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFE 464

Query:   480 QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNL 539
             QERG   S +ECY++QYGV+EEEA ++ +  +   W +INEE   P   P   L+  LNL
Sbjct:   465 QERGHVASGIECYMKQYGVTEEEAHDEFRKQLVKAWKDINEECLRPYRVPKPLLMRILNL 524

Query:   540 ARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPL 572
              R++ V+Y+N DGYT+     KD IASLL+DP+
Sbjct:   525 TRVIDVIYKNEDGYTHVKKAMKDNIASLLIDPM 557
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|D0VMR6 C2 "Delta-guaiene synthase 1" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR7 C3 "Delta-guaiene synthase 2" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR8 C4 "Delta-guaiene synthase 3" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.48590.95290.9820yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027449001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-105
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 3e-97
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 1e-71
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 3e-42
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 4e-39
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-30
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 1e-14
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  687 bits (1775), Expect = 0.0
 Identities = 281/557 (50%), Positives = 377/557 (67%), Gaps = 20/557 (3%)

Query: 20  RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVA 78
           R S+N+ PS+WGD HF+++SS+      E+E+  E LK E+ K+L  +       E +  
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWL 59

Query: 79  IVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYK 138
           I   LQRLG++YHFE+EIKE L  IY             + +DLY  AL FRLLRQHGY 
Sbjct: 60  IDR-LQRLGISYHFEDEIKEILDYIYRYWTERGES----NEDDLYTTALGFRLLRQHGYN 114

Query: 139 VSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS 198
           VS+D+FKKF+DE G+FK  LT D KG+L LYEAS+L   GE+IL+EA  F+ KHL+  L 
Sbjct: 115 VSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLE 174

Query: 199 H---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQ 255
               +   L  ++E++LEIPLH  +PRLEAR YI  YE ++   NE +LELAKLDFN+LQ
Sbjct: 175 SNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDD-HNETLLELAKLDFNILQ 233

Query: 256 ALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIA 315
           ALH+ EL  +SRWWKD+D A+KLPFARDRLVECYFW  G YFEP+YS  R  + K IA+ 
Sbjct: 234 ALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALI 293

Query: 316 SVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEME 375
           +VIDD YDVYGTLEEL+LFT A+E       RW++ A ++LP+YM++ + ALL+ V E+E
Sbjct: 294 TVIDDTYDVYGTLEELELFTEAVE-------RWDISAIDQLPEYMKIVFKALLNTVNEIE 346

Query: 376 DKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVE 435
           ++L+ +     + Y KEA K LVKAY VEAKW H  YVPTFEE +EN+ +S G   L + 
Sbjct: 347 EELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLT 406

Query: 436 ALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQ 495
           + +G+ D+ +T+ A +W  S PK++R+SS I RL +D+ TY+ E +RGD  SS+ECY+++
Sbjct: 407 SFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKE 465

Query: 496 YGVSEEEACNKIKGMVEIEWMNINEEIQDPNHP-PLQWLLPSLNLARMMVVLYQNGDGYT 554
           YGVSEEEA  +IK M+E  W  +NEE   P+   P       LNLAR++ V Y+ GDG+T
Sbjct: 466 YGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFT 525

Query: 555 NSTGKTKDRIASLLVDP 571
           +  G+ KD I SLL +P
Sbjct: 526 HPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 574
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.84
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.56
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.27
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 93.05
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 91.52
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 88.6
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 86.9
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 84.14
PLN02890422 geranyl diphosphate synthase 83.67
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 80.14
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=3.4e-153  Score=1271.85  Aligned_cols=532  Identities=53%  Similarity=0.915  Sum_probs=510.0

Q ss_pred             CCCCCCCCCCCCC-CcccccCCcccchhHHHHHHHHHHHHHHHHHhc---cccCccCHHHHHHHHHHHHHhCcccCcHHH
Q 008206           20 RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS---NNTAWKTLEEIVAIVNQLQRLGVAYHFENE   95 (574)
Q Consensus        20 r~~~~~~ps~W~~-~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~---~~~~~~d~~~~l~lID~lqrLGi~~hF~~E   95 (574)
                      ||+++||||+||| +|++++++.. ....+.+++++||++||+||..   ..    |++++|++||+||||||+|||++|
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~-~~~~~~~~~~~lk~~v~~~~~~~~~~~----~~~~~l~liD~lqrLGi~~hF~~E   75 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPV----DLFERLWLIDRLQRLGISYHFEDE   75 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcc-hhHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHHHcCchhhhHHH
Confidence            7899999999999 7777655432 2226889999999999999985   56    899999999999999999999999


Q ss_pred             HHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhccccccccccccccccChHHHHhHhhhccC
Q 008206           96 IKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYL  174 (574)
Q Consensus        96 I~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~glL~LYeAs~l  174 (574)
                      |+++|++||++| +++.  ..   ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+
T Consensus        76 I~~~L~~i~~~~~~~~~--~~---~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l  150 (542)
T cd00684          76 IKEILDYIYRYWTERGE--SN---EDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHL  150 (542)
T ss_pred             HHHHHHHHHHhhccccc--cc---CCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhc
Confidence            999999999998 4331  11   57999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHhhc---CCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhch
Q 008206          175 RVQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDF  251 (574)
Q Consensus       175 ~~~gE~iLdea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~~n~~lLelAkldF  251 (574)
                      ++|||+|||||++||++||++.+++   ++++|+++|++||++|||+++||||||+||++|+++ +++|++||||||+||
T Consensus       151 ~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~-~~~n~~lLelAkldf  229 (542)
T cd00684         151 SFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQE-DDHNETLLELAKLDF  229 (542)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCC-ccccHHHHHHHHHHH
Confidence            9999999999999999999999996   789999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHH
Q 008206          252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEEL  331 (574)
Q Consensus       252 n~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl  331 (574)
                      |+||++||+||+++++||+++||.+++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||.+|+
T Consensus       230 n~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl  309 (542)
T cd00684         230 NILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEEL  309 (542)
T ss_pred             HHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHH
Confidence            99999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008206          332 KLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHA  410 (574)
Q Consensus       332 ~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~  410 (574)
                      +.||+||+       |||+++++.+|+|||+||.+|++++++++.++.+ +++ +++.|++++|++++++|++||+|+++
T Consensus       310 ~~ft~ai~-------rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~-~~~~~~~~~~~~~~~a~l~EA~w~~~  381 (542)
T cd00684         310 ELFTEAVE-------RWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEAWKDLVKAYLVEAKWAHE  381 (542)
T ss_pred             HHHHHHHH-------hccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999       9999999999999999999999999999999999 776 89999999999999999999999999


Q ss_pred             CCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhh
Q 008206          411 KYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVE  490 (574)
Q Consensus       411 g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~  490 (574)
                      |++||++|||++|.+|+|+++++++++++||.. +|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.
T Consensus       382 g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~  460 (542)
T cd00684         382 GYVPTFEEYMENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIE  460 (542)
T ss_pred             CCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHH
Confidence            999999999999999999999999999999999 9999999988789999999999999999999999999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhccccccCCCCCCCChhHHHHHHhhhc
Q 008206          491 CYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLV  569 (574)
Q Consensus       491 cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k~~i~~ll~  569 (574)
                      |||+|+|+|+|||+++++++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|++.||++|++||+
T Consensus       461 ~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~  540 (542)
T cd00684         461 CYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLF  540 (542)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhc
Confidence            99999999999999999999999999999999998 78999999999999999999999999999998789999999999


Q ss_pred             cc
Q 008206          570 DP  571 (574)
Q Consensus       570 ~p  571 (574)
                      +|
T Consensus       541 ~p  542 (542)
T cd00684         541 EP  542 (542)
T ss_pred             CC
Confidence            98

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-143
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-120
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-120
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-120
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-120
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-120
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-120
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-120
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-119
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-118
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-100
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-95
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-94
2j5c_A569 Rational Conversion Of Substrate And Product Specif 3e-89
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 5e-78
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 5e-69
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 3e-60
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 6e-29
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  504 bits (1299), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/568 (46%), Positives = 367/568 (64%), Gaps = 26/568 (4%)
Query: 9   SSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS--N 66
           SS  S+  D  R  +++ PSIWGD F+N    +K  + E EKR + LK E+ K++V+   
Sbjct: 11  SSPLSSNKDEMRPKADFQPSIWGDLFLNCP--DKNIDAETEKRHQQLKEEVRKMIVAPMA 68
Query: 67  NTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVA 126
           N+  K     +A ++ +QRLGV+YHF  EI++ L+ IY +        N D  NDLY  +
Sbjct: 69  NSTQK-----LAFIDSVQRLGVSYHFTKEIEDELENIYHN--------NNDAENDLYTTS 115
Query: 127 LRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEAC 186
           +RFRLLR+HGY VS D+F KF+DE+G FK+ +T+D +GLL LY+ASYLRV GE+IL+EA 
Sbjct: 116 IRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAI 175
Query: 187 EFXXXXXXXXXXXXXTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILEL 246
            F              PL ++V H+L+  + RG+PR+EAR Y+S+Y+ D  + N+ +LE 
Sbjct: 176 SFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQ-DIESHNKALLEF 234
Query: 247 AKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK 306
           AK+DFN+LQ LHR ELSEI RWWKD+DF  KLP+ARDR+VE YFWI GVYFEP+YS  RK
Sbjct: 235 AKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRK 294
Query: 307 FMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFA 366
            +TK+IA+AS++DD YD Y T EEL  +T+AIE       RW++   +E+P+YM+  Y A
Sbjct: 295 MLTKVIAMASIVDDTYDSYATYEELIPYTNAIE-------RWDIKCIDEIPEYMKPSYKA 347
Query: 367 LLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMS 426
           LLDV +EM   +        + YAK A+  L ++Y VEAKW    Y P+FEE   N+  +
Sbjct: 348 LLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPT 407
Query: 427 SGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAP 486
            GY MLA+ + VG+ D+ +T     WA S PKII++S++I R  DDV  +K +  R D  
Sbjct: 408 CGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDC 466
Query: 487 SSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVL 546
           S++ECY+++YGV+ +EA +     VE  W ++N+E   P   P + L  SLNLAR+M VL
Sbjct: 467 SAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVL 526
Query: 547 YQNGDGYTNSTGKTKDRIASLLVDPLPM 574
           Y+ GDGYT      K  I SLL++P+ +
Sbjct: 527 YREGDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query574
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 0.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 0.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 0.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 0.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 0.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-161
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 6e-04
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-158
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-158
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-111
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 1e-31
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 6e-30
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 7e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 2e-11
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 7e-08
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  553 bits (1426), Expect = 0.0
 Identities = 261/566 (46%), Positives = 368/566 (65%), Gaps = 22/566 (3%)

Query: 9   SSKESTKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNT 68
           SS  S+  D  R  +++ PSIWGD F+N        + E EKR + LK E+ K++V+   
Sbjct: 11  SSPLSSNKDEMRPKADFQPSIWGDLFLNCPDKN--IDAETEKRHQQLKEEVRKMIVAPM- 67

Query: 69  AWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALR 128
                 + +A ++ +QRLGV+YHF  EI++ L+ IY ++         D  NDLY  ++R
Sbjct: 68  --ANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNN--------NDAENDLYTTSIR 117

Query: 129 FRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEF 188
           FRLLR+HGY VS D+F KF+DE+G FK+ +T+D +GLL LY+ASYLRV GE+IL+EA  F
Sbjct: 118 FRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISF 177

Query: 189 SRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAK 248
           +  HL   ++ L  PL ++V H+L+  + RG+PR+EAR Y+S+Y+   S  N+ +LE AK
Sbjct: 178 TTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIES-HNKALLEFAK 236

Query: 249 LDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFM 308
           +DFN+LQ LHR ELSEI RWWKD+DF  KLP+ARDR+VE YFWI GVYFEP+YS  RK +
Sbjct: 237 IDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKML 296

Query: 309 TKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALL 368
           TK+IA+AS++DD YD Y T EEL  +T+AIE       RW++   +E+P+YM+  Y ALL
Sbjct: 297 TKVIAMASIVDDTYDSYATYEELIPYTNAIE-------RWDIKCIDEIPEYMKPSYKALL 349

Query: 369 DVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSG 428
           DV +EM   +        + YAK A+  L ++Y VEAKW    Y P+FEE   N+  + G
Sbjct: 350 DVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCG 409

Query: 429 YPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSS 488
           Y MLA+ + VG+ D+ +T     WA S PKII++S++I R  DDV  +K +  R D  S+
Sbjct: 410 YAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSA 468

Query: 489 VECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQ 548
           +ECY+++YGV+ +EA +     VE  W ++N+E   P   P + L  SLNLAR+M VLY+
Sbjct: 469 IECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYR 528

Query: 549 NGDGYTNSTGKTKDRIASLLVDPLPM 574
            GDGYT      K  I SLL++P+ +
Sbjct: 529 EGDGYTYVGKAAKGGITSLLIEPIAL 554
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.75
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.21
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 90.48
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 85.24
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=6.4e-167  Score=1369.56  Aligned_cols=537  Identities=48%  Similarity=0.868  Sum_probs=498.1

Q ss_pred             ccccccCCCCCCCCCCCCCCcccccCCcccchhHHHHHHHHHHHHHHHHHhc-cccCccCHHHHHHHHHHHHHhCcccCc
Q 008206           14 TKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHF   92 (574)
Q Consensus        14 ~~~~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~-~~~~~~d~~~~l~lID~lqrLGi~~hF   92 (574)
                      ++.++.||++|||||+|||+||++ ++ ++..+.+.+|+++||+|||+||.+ .+    |++++|++||+||||||+|||
T Consensus        16 ~~~~~~R~~~~~~ps~W~~~fl~~-~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~l~lID~lqrLGi~~hF   89 (554)
T 3g4d_A           16 SNKDEMRPKADFQPSIWGDLFLNC-PD-KNIDAETEKRHQQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLGVSYHF   89 (554)
T ss_dssp             ---------CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCS----SHHHHHHHHHHHHHTTCGGGC
T ss_pred             ccCCCCCCCCCCCccccccccccC-CC-chhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhhh
Confidence            335568999999999999999997 43 344577899999999999999985 46    899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHHhcCceechhhhccccccccccccccccChHHHHhHhhhc
Q 008206           93 ENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEAS  172 (574)
Q Consensus        93 ~~EI~~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~g~F~~~~~~dv~glL~LYeAs  172 (574)
                      ++||+++|++||++   +  ...   ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||
T Consensus        90 ~~EI~~~L~~i~~~---~--~~~---~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs  161 (554)
T 3g4d_A           90 TKEIEDELENIYHN---N--NDA---ENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQAS  161 (554)
T ss_dssp             HHHHHHHHHHHHHS---C--CCT---TCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc---c--CCC---CCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHH
Confidence            99999999999985   1  111   479999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhchH
Q 008206          173 YLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN  252 (574)
Q Consensus       173 ~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~~n~~lLelAkldFn  252 (574)
                      |+++|||+|||||++||++||++.+.+++++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||
T Consensus       162 ~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn  240 (554)
T 3g4d_A          162 YLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI-ESHNKALLEFAKIDFN  240 (554)
T ss_dssp             TTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS-TTCCHHHHHHHHHHHH
T ss_pred             hCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC-ccccHHHHHHHHHHHH
Confidence            999999999999999999999999888888999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhhcccCCHHHHH
Q 008206          253 LLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELK  332 (574)
Q Consensus       253 ~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~  332 (574)
                      +||++||+||++++|||+++||.+++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+
T Consensus       241 ~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~  320 (554)
T 3g4d_A          241 MLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELI  320 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence            99999999999999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008206          333 LFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAK  411 (574)
Q Consensus       333 ~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~~~a~l~EAkW~~~g  411 (574)
                      .||+||+       |||++++++||+|||+||.+|+++++|+++++.+ |+. ++++|++++|+++++||++||+|+++|
T Consensus       321 ~ft~ai~-------RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~EAkW~~~g  392 (554)
T 3g4d_A          321 PYTNAIE-------RWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQ-YRVEYAKNAMIRLAQSYLVEAKWTLQN  392 (554)
T ss_dssp             HHHHHHH-------HCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCT-HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHH-------hcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999       9999999999999999999999999999999988 876 799999999999999999999999999


Q ss_pred             CCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhH
Q 008206          412 YVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVEC  491 (574)
Q Consensus       412 ~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~c  491 (574)
                      |+||+||||+||++|+|++++++++++|||+. +|+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+|
T Consensus       393 yvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~c  471 (554)
T 3g4d_A          393 YKPSFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIEC  471 (554)
T ss_dssp             CCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTT-SCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHH
T ss_pred             CCCCHHHHHhccceeehHHHHHHHHHHhcCCC-CCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHH
Confidence            99999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhccccccCCCCCCCChhHHHHHHhhhccc
Q 008206          492 YVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDP  571 (574)
Q Consensus       492 yMke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dgyt~~~~~~k~~i~~ll~~p  571 (574)
                      ||+|+|+|+|||+++++++|+++||+||++|++++++|++|+++++|+||++++||+++||||.|+..||++|++||++|
T Consensus       472 YMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~P  551 (554)
T 3g4d_A          472 YMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEP  551 (554)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCC
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999988999999999999999999999999999999778999999999999


Q ss_pred             CCC
Q 008206          572 LPM  574 (574)
Q Consensus       572 i~~  574 (574)
                      ||+
T Consensus       552 i~l  554 (554)
T 3g4d_A          552 IAL  554 (554)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 574
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-135
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-130
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 1e-70
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 1e-69
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 5e-49
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 6e-33
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  394 bits (1014), Expect = e-135
 Identities = 119/333 (35%), Positives = 189/333 (56%), Gaps = 7/333 (2%)

Query: 240 NELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEP 299
           N LI ELAKL+FN++QA H+ EL ++SRWW  + F  KLPF RDRLVE +FW +G++   
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 300 KYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKY 359
           ++   RK    II +A+VIDDIYDVYGTL+EL+LFT   +       RW+  +   LP Y
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFK-------RWDTESITRLPYY 114

Query: 360 MQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEEC 419
           MQ+CY+ + + + +    ++ +    C+ Y ++++  LV+AYF EAKW+H+ Y P+ +E 
Sbjct: 115 MQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEY 174

Query: 420 VENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVE 479
           +  + +S   P +         + +     +D       I+  + +I RL DD+ T   E
Sbjct: 175 LNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFE 234

Query: 480 QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNL 539
             RGD P +++CY+++   SEEEA   +K ++   W ++N  I      P   +  + N+
Sbjct: 235 LARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANI 294

Query: 540 ARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPL 572
            R+   +Y +GDG+     KT + IA LL +P 
Sbjct: 295 GRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query574
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.36
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.4e-97  Score=774.63  Aligned_cols=326  Identities=43%  Similarity=0.832  Sum_probs=309.7

Q ss_pred             ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhHhcCcCCChhhhhhHhhhhhhhhccccCCCcchhhHHHHHHHHHHHhh
Q 008206          239 RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVI  318 (574)
Q Consensus       239 ~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Rl~laK~~~l~~vi  318 (574)
                      +|++||||||||||+||++||+||+.++|||+++||.+++||||||++|||||++|++|||+||.+|+++||++++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~   80 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhh
Confidence            58999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCHHHHHHHHHHHHhhhhhccccchhhhccCchhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHH
Q 008206          319 DDIYDVYGTLEELKLFTHAIESIHIVFGRWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGL  397 (574)
Q Consensus       319 DD~fD~ygt~eEl~~ft~ai~~~~~~~~rWD~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~~~~~  397 (574)
                      ||+||+|||+||++.||+||+       |||.++++.||+|||+||.++++++++++.++.+ |++ +++++++++|+++
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~-------rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~-~~~~~l~~~w~~~  152 (328)
T d5easa2          81 DDTFDAYGTVKELEAYTDAIQ-------RWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS-HIVCHAIERMKEV  152 (328)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHH-------HTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHh-------cCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCe-eeHHHHHHHHHHH
Confidence            999999999999999999999       9999999999999999999999999999999988 777 8999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHhhhcchhHHHHHHHHHHHHhcCCcchh
Q 008206          398 VKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYK  477 (574)
Q Consensus       398 ~~a~l~EAkW~~~g~vPT~eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~  477 (574)
                      +++|++||+|+++||+||+||||+||.+|+|+++++.+++++||..  +++.++|+.++|+|+++++.|+||+|||+|++
T Consensus       153 ~~~~l~EA~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~~--~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~  230 (328)
T d5easa2         153 VRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSA--TEQDFEWLSKNPKILEASVIICRVIDDTATYE  230 (328)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTTC--CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCCC--cHHHHHhcccchHHHHHHHHHHHHHhhhHHHH
Confidence            9999999999999999999999999999999999999999999974  67789999999999999999999999999999


Q ss_pred             hhhhcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhccccccC-CCCCCC
Q 008206          478 VEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNS  556 (574)
Q Consensus       478 ~E~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~ie~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-Dgyt~~  556 (574)
                      +|+++|+++|+|+|||+|+|+|+|||+++++++|+++||+||+++++++++|++|+++++|+||+++++|+++ ||||+|
T Consensus       231 ~E~~rG~~~s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~  310 (328)
T d5easa2         231 VEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHP  310 (328)
T ss_dssp             HHHHTTCTTCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC---------
T ss_pred             HHhccCCCCeeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999977 999999


Q ss_pred             ChhHHHHHHhhhcccCCC
Q 008206          557 TGKTKDRIASLLVDPLPM  574 (574)
Q Consensus       557 ~~~~k~~i~~ll~~pi~~  574 (574)
                      ++.+|++|++||++||||
T Consensus       311 ~~~~k~~i~~ll~epi~~  328 (328)
T d5easa2         311 EKVLKPHIINLLVDSIKI  328 (328)
T ss_dssp             --CCHHHHHHHHTCCCCC
T ss_pred             hHHHHHHHHHHhccCCcC
Confidence            878999999999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure