Citrus Sinensis ID: 008217

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570---
Protein Sequence
MRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVNRLAHAKKVDSSPSLNAISDIWTMASLSQV
Secondary Structure (PSIPRED)
cEEEEEccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEEccccccccEEEccccccccccccccEEEEEccccccccccccccEEEEccccccccccEEEEcccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHcccHHcccHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEEccEEEEEEEEEEcccccEEEEEcccEEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccEEEEEEEEcccccccccHHHHHcccccccccHHHcccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccHHHHHHHcccEEEEEcEEccccccccEEEEEEEcccccEEEEEEHHHccccHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEccccEEEEEEEcccccEEEEEEHHEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mrftvsngVWVISHINFehnhelakpeERQFLRSCRKIFeasggvdvgrrrtkplsylgndfggdrnvQFAKKDmgnylpremgnmmepgdvqGLLNYFrrkkcedpsfFYAVQVNQLNQATNFfwrdgrskldydcfgdvvsfdatfrlnkynlicapfvgvnhhwkNMLFGCAFLLDESTHSYVWLFESFLesmgntqpktiftNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCfyechdetefQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLvfnsdtfsanidsvqrsdsidTVFHQVSTKRMDVISFVQHFEEKTKEMHLdeleddhfckhvvPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHalkafdfnnltqipVQYILKRWTKEAKKGIVVRVsnerhglssntvKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVNRLAHakkvdsspslnaisDIWTMASLSQV
Flexible Loop (DISEMBL)
MRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIfeasggvdvgrrrtkplsylgndfggdrnvqfAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSanidsvqrsdsIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALkafdfnnltqIPVQYILKRWTKEAKKGIVVrvsnerhglssntvkSVQSLRLSELMHMGSNVYSiaslsdsgTKIVKEKLAEAMELLEKDEEIVNRLAhakkvdsspslnaisdiwtmaslsqv
Low Complexity Region (SEG)
MRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVkeklaeamellekdeeIVNRLAHAKKVDSSPSLNAISDIWTMASLSQV
Disordered region (IsUnstruct)
***TVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYL**********GDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSN********************LMHMGSNVYSIAS*******I***************************************IW********
Disordered Region (DISOPRED)
*RFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRK****************PLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIV***************KSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAM****************************************
Disordered Region (DISEMBL)
MRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVNRLAHAKKVDSSPSLNAISDIWTMASLSQV
Disordered Region (DISPRO)
MRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEA*G*VDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKK**************SNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVNR*******************W*****S**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVNRLAHAKKVDSSPSLNAISDIWTMASLSQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	573	2.2.26 [Sep-21-2011]
Q9SZL8	788	Protein FAR1-RELATED SEQU	yes	no	0.902	0.656	0.332	4e-81
Q9ZVC9	851	Protein FAR1-RELATED SEQU	no	no	0.877	0.591	0.308	1e-68
Q9SWG3	827	Protein FAR-RED IMPAIRED	no	no	0.825	0.571	0.311	3e-68
Q9LIE5	839	Protein FAR-RED ELONGATED	no	no	0.863	0.589	0.299	1e-66
Q6NQJ7	732	Protein FAR1-RELATED SEQU	no	no	0.898	0.703	0.296	4e-62
Q9SZL7	545	Protein FAR1-RELATED SEQU	no	no	0.692	0.728	0.299	2e-59
Q9M8J3	764	Protein FAR1-RELATED SEQU	no	no	0.809	0.607	0.280	2e-59
Q3E7I5	788	Protein FAR1-RELATED SEQU	no	no	0.820	0.596	0.288	2e-57
Q9SSQ4	703	Protein FAR1-RELATED SEQU	no	no	0.673	0.549	0.302	1e-51
Q3EBQ3	807	Protein FAR1-RELATED SEQU	no	no	0.769	0.546	0.285	5e-48

>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1

 Score =  303 bits (775), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 179/538 (33%), Positives = 288/538 (53%), Gaps = 21/538 (3%)

Query: 7   NGVWVISHINFEHNHELAKPEERQFLRSCRKI----------FEASGGVDVGRRRTKPLS 56
           +G W++S    +HNHEL  P++   LRS R+I           +A+G   +G RR   +S
Sbjct: 161 SGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAG---MGPRRI--MS 215

Query: 57  YLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVN 116
            L  ++GG   V F + D  NY+       +E G++Q LL+Y R+   ++P+FFY+VQ +
Sbjct: 216 ALIKEYGGISKVGFTEVDCRNYMRNNRQKSIE-GEIQLLLDYLRQMNADNPNFFYSVQGS 274

Query: 117 QLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAF 176
           +     N FW D ++ +D+  FGD V+FD T+R N+Y L  APF GVNHH + +LFGCAF
Sbjct: 275 EDQSVGNVFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAF 334

Query: 177 LLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDA 236
           +++E+  S+VWLF ++L +M    P +I T+ +  +  AI  VF   RHR    HI+K  
Sbjct: 335 IINETEASFVWLFNTWLAAMSAHPPVSITTDHDAVIRAAIMHVFPGARHRFCKWHILKKC 394

Query: 237 RRNLANQF-ANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKW 295
           +  L++ F  +  F    +KC        +F+  W  +++K+ L DH WL+ +YS R +W
Sbjct: 395 QEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQW 454

Query: 296 CLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHF 355
             V+  DTF A++    RSDSI++ F        ++  F + +E+  +     E++ D+ 
Sbjct: 455 VPVYLRDTFFADMSLTHRSDSINSYFDGYINASTNLSQFFKLYEKALESRLEKEVKADYD 514

Query: 356 CKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEG 415
             +  P L+  + +   A  +YT K+F  F+ EL+G +     +   DG++  Y+  + G
Sbjct: 515 TMNSPPVLKTPSPMEKQASELYTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYG 574

Query: 416 Q-QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAK 474
           +  K   + +N+     +CSC++FE  GI+CRH L  F   NL  +P  YILKRWT+ AK
Sbjct: 575 EAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHILAVFRVTNLLTLPPYYILKRWTRNAK 634

Query: 475 KGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEA 532
             ++    N  H   +N ++S  ++R + L H  SN    A  S     +    L EA
Sbjct: 635 SSVIFDDYN-LHAY-ANYLES-HTVRYNTLRHKASNFVQEAGKSLYTCDVAVVALQEA 689

Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2

 Score =  261 bits (667), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 168/544 (30%), Positives = 265/544 (48%), Gaps = 41/544 (7%)

Query: 10  WVISHINFEHNHELAKP-------EERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDF 62
           WV++    EH H LA           R F  S +  ++    V  G      + Y+  D 
Sbjct: 122 WVVTKFVKEHTHGLASSNMLHCLRPRRHFANSEKSSYQEGVNVPSG------MMYVSMDA 175

Query: 63  G--GDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQ 120
              G RN       M     R +G      D   LL YF+R + E+P FFYAVQ+++ NQ
Sbjct: 176 NSRGARNAS-----MATNTKRTIGR-----DAHNLLEYFKRMQAENPGFFYAVQLDEDNQ 225

Query: 121 ATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDE 180
            +N FW D RS++ Y  FGD V+ D  +R N++ +  APF GVNHH + +LFGCA +LDE
Sbjct: 226 MSNVFWADSRSRVAYTHFGDTVTLDTRYRCNQFRVPFAPFTGVNHHGQAILFGCALILDE 285

Query: 181 STHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNL 240
           S  S++WLF++FL +M +  P ++ T+++ A+  A   VF   RH ++   ++++ +  L
Sbjct: 286 SDTSFIWLFKTFLTAMRDQPPVSLVTDQDRAIQIAAGQVFPGARHCINKWDVLREGQEKL 345

Query: 241 ANQ-FANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVF 299
           A+   A   F   L  C        EF+ SW  +I+K+ LG H WL  LY+ R +W  V+
Sbjct: 346 AHVCLAYPSFQVELYNCINFTETIEEFESSWSSVIDKYDLGRHEWLNSLYNARAQWVPVY 405

Query: 300 NSDTFSANIDSVQ--RSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCK 357
             D+F A +   Q       D   +Q +T  M    F + +E   +     E+E D    
Sbjct: 406 FRDSFFAAVFPSQGYSGSFFDGYVNQQTTLPM----FFRLYERAMESWFEMEIEADLDTV 461

Query: 358 HVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIE-EGQ 416
           +  P L+  + + N A  ++T KIF  F+ EL+         +  DG    +     E  
Sbjct: 462 NTPPVLKTPSPMENQAANLFTRKIFGKFQEELVETFAHTANRIEDDGTTSTFRVANFEND 521

Query: 417 QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKG 476
            K   + +       +CSC++FE  GILCRH L  F   N+  +P  YIL+RWT+ AK  
Sbjct: 522 NKAYIVTFCYPEMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRWTRNAKSM 581

Query: 477 IVV--RVSNERHGLSSNTVKSV--QSLRLSELMHMGSNVYSIA--SLSDSGTK--IVKEK 528
           + +   VS   H  S +    +  ++++ +E   + +  Y+IA   L + G K  +V+++
Sbjct: 582 VELDEHVSENGHDSSIHRYNHLCREAIKYAEEGAITAEAYNIALGQLREGGKKVSVVRKR 641

Query: 529 LAEA 532
           +  A
Sbjct: 642 IGRA 645

Putative transcription activator involved in regulating light control of development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SWG3|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1

 Score =  259 bits (663), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 150/481 (31%), Positives = 244/481 (50%), Gaps = 8/481 (1%)

Query: 6   SNGVWVISHINFEHNHELAKPEERQFLRSCRKI-FEASGGVD----VGRRRTKPLSYLGN 60
            +G W+I     +HNHEL  P      R  R +       +D    V  R  K    +  
Sbjct: 135 PDGKWIIHEFVKDHNHELL-PALAYHFRIQRNVKLAEKNNIDILHAVSERTKKMYVEMSR 193

Query: 61  DFGGDRNV-QFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLN 119
             GG +N+    + D+ + + +     +E GD Q LL YF+R K E+P FFYA+ +N+  
Sbjct: 194 QSGGYKNIGSLLQTDVSSQVDKGRYLALEEGDSQVLLEYFKRIKKENPKFFYAIDLNEDQ 253

Query: 120 QATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLD 179
           +  N FW D +S+ DY  F DVVSFD T+      L  A F+GVNHH + ML GCA + D
Sbjct: 254 RLRNLFWADAKSRDDYLSFNDVVSFDTTYVKFNDKLPLALFIGVNHHSQPMLLGCALVAD 313

Query: 180 ESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRN 239
           ES  ++VWL +++L +MG   PK I T++++ +  A+  +   TRH  +  H+++     
Sbjct: 314 ESMETFVWLIKTWLRAMGGRAPKVILTDQDKFLMSAVSELLPNTRHCFALWHVLEKIPEY 373

Query: 240 LANQFANLE-FMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLV 298
            ++     E F+   NKC +    + EF + W  M+++F L +  WL  L+  R KW   
Sbjct: 374 FSHVMKRHENFLLKFNKCIFRSWTDDEFDMRWWKMVSQFGLENDEWLLWLHEHRQKWVPT 433

Query: 299 FNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKH 358
           F SD F A + + QRS+S+++ F +   K++ +  F++ +    +  + +E   D    H
Sbjct: 434 FMSDVFLAGMSTSQRSESVNSFFDKYIHKKITLKEFLRQYGVILQNRYEEESVADFDTCH 493

Query: 359 VVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQK 418
             P L+  +         YT  IF  F++E+LG +    ++  +D  +  +   +  +  
Sbjct: 494 KQPALKSPSPWEKQMATTYTHTIFKKFQVEVLGVVACHPRKEKEDENMATFRVQDCEKDD 553

Query: 419 VCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIV 478
              + ++ +  ++ C C++FE  G LCRHAL          IP QYILKRWTK+AK G++
Sbjct: 554 DFLVTWSKTKSELCCFCRMFEYKGFLCRHALMILQMCGFASIPPQYILKRWTKDAKSGVL 613

Query: 479 V 479
            
Sbjct: 614 A 614

Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIE5|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1

 Score =  254 bits (650), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 248/521 (47%), Gaps = 26/521 (4%)

Query: 7   NGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDR 66
           +G WVI     EHNHEL   +        RKI+ A                +   F   +
Sbjct: 168 DGKWVIHSFVREHNHELLPAQA--VSEQTRKIYAA----------------MAKQFAEYK 209

Query: 67  NVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFW 126
            V   K D  +   +     +E GD + LL++  R +  + +FFYAV +    +  N FW
Sbjct: 210 TVISLKSDSKSSFEKGRTLSVETGDFKILLDFLSRMQSLNSNFFYAVDLGDDQRVKNVFW 269

Query: 127 RDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYV 186
            D +S+ +Y  F DVVS D T+  NKY +  A FVGVN H++ M+ GCA + DES  +Y 
Sbjct: 270 VDAKSRHNYGSFCDVVSLDTTYVRNKYKMPLAIFVGVNQHYQYMVLGCALISDESAATYS 329

Query: 187 WLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFAN 246
           WL E++L ++G   PK + T  +  M+  +  +F  TRH L   H++     NL      
Sbjct: 330 WLMETWLRAIGGQAPKVLITELDVVMNSIVPEIFPNTRHCLFLWHVLMKVSENLGQVVKQ 389

Query: 247 LE-FMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFS 305
            + FM    KC Y+   + +F   W   + +F L D  W+  LY  R KW   + +D   
Sbjct: 390 HDNFMPKFEKCIYKSGKDEDFARKWYKNLARFGLKDDQWMISLYEDRKKWAPTYMTDVLL 449

Query: 306 ANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQV 365
           A + + QR+DSI+  F +   K+  V  FV+ ++   ++   +E + D    +  P ++ 
Sbjct: 450 AGMSTSQRADSINAFFDKYMHKKTSVQEFVKVYDTVLQDRCEEEAKADSEMWNKQPAMKS 509

Query: 366 WNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYN 425
            +        VYT  +F  F++E+LG +    +E  +D     +   +    +   + +N
Sbjct: 510 PSPFEKSVSEVYTPAVFKKFQIEVLGAIACSPREENRDATCSTFRVQDFENNQDFMVTWN 569

Query: 426 LSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNER 485
            +  ++SC C+LFE  G LCRH L      +L+ IP QYILKRWTK+AK       S E 
Sbjct: 570 QTKAEVSCICRLFEYKGYLCRHTLNVLQCCHLSSIPSQYILKRWTKDAKSR---HFSGEP 626

Query: 486 HGLSSNTVK----SVQSLRLSELMHMGSNVYSIASLSDSGT 522
             L +  ++      ++L+L+E   +    Y+IA L+  G 
Sbjct: 627 QQLQTRLLRYNDLCERALKLNEEASLSQESYNIAFLAIEGA 667

Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2

 Score =  239 bits (611), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 158/533 (29%), Positives = 263/533 (49%), Gaps = 18/533 (3%)

Query: 6   SNGVWVISHINFEHNHELAKPEERQFLRSCRKI-FEASGGVDVGRRRTKPLSYLGNDFGG 64
            +G W +     EHNH+L  PE+  + RS R      S    + R++  PL+   +    
Sbjct: 78  PDGKWYVYSFVKEHNHDLL-PEQAHYFRSHRNTELVKSNDSRLRRKKNTPLTDCKH-LSA 135

Query: 65  DRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNF 124
             ++ F    M N   +    +++ GD + LL +  R + E+P FF+AV  ++ +   N 
Sbjct: 136 YHDLDFIDGYMRNQHDKGRRLVLDTGDAEILLEFLMRMQEENPKFFFAVDFSEDHLLRNV 195

Query: 125 FWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHS 184
           FW D +   DY  F DVVSF+ ++ ++KY +    FVGVNHH + +L GC  L D++ ++
Sbjct: 196 FWVDAKGIEDYKSFSDVVSFETSYFVSKYKVPLVLFVGVNHHVQPVLLGCGLLADDTVYT 255

Query: 185 YVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLAN-Q 243
           YVWL +S+L +MG  +PK + T++N A+  AI  V  +TRH     H++    RNL    
Sbjct: 256 YVWLMQSWLVAMGGQKPKVMLTDQNNAIKAAIAAVLPETRHCYCLWHVLDQLPRNLDYWS 315

Query: 244 FANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDT 303
                FMK L KC Y    E EF   W  +I+KF L D  W++ LY  R  W   F    
Sbjct: 316 MWQDTFMKKLFKCIYRSWSEEEFDRRWLKLIDKFHLRDVPWMRSLYEERKFWAPTFMRGI 375

Query: 304 FSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRL 363
             A +    RS+S++++F +       +  F++ +    ++ + +E + D    H  P L
Sbjct: 376 TFAGLSMRCRSESVNSLFDRYVHPETSLKEFLEGYGLMLEDRYEEEAKADFDAWHEAPEL 435

Query: 364 QVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKIN 423
           +  +      + VY+ +IF  F++E+LG     + +  ++G     +  ++ Q+ +  ++
Sbjct: 436 KSPSPFEKQMLLVYSHEIFRRFQLEVLGAAACHLTKESEEGTTYSVKDFDDEQKYL--VD 493

Query: 424 YNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSN 483
           ++    DI CSC+ FE  G LCRHA+     + +  IP+ Y+L+RWT  A+         
Sbjct: 494 WDEFKSDIYCSCRSFEYKGYLCRHAIVVLQMSGVFTIPINYVLQRWTNAARN-------- 545

Query: 484 ERHGLSSNTVKSVQS--LRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAME 534
            RH +S N ++ VQS   R ++L      +    SLS     I    + EA +
Sbjct: 546 -RHQISRN-LELVQSNIRRFNDLCRRAIILGEEGSLSQESYDIAMFAMKEAFK 596

Putative transcription activator involved in regulating light control of development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/408 (29%), Positives = 211/408 (51%), Gaps = 11/408 (2%)

Query: 92  VQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLN 151
           V+ +LNY +R++ E+P F YA++    +   N FW D   +L+Y  FGD + FD T+R  
Sbjct: 18  VEHVLNYLKRRQLENPGFLYAIE----DDCGNVFWADPTCRLNYTYFGDTLVFDTTYRRG 73

Query: 152 K-YNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENE 210
           K Y +  A F G NHH + +LFGCA +L+ES  S+ WLF+++L++M    P +I    + 
Sbjct: 74  KRYQVPFAAFTGFNHHGQPVLFGCALILNESESSFAWLFQTWLQAMSAPPPPSITVEPDR 133

Query: 211 AMSKAIETVFMKTRHRLSTGHIVKDARRNLANQF-ANLEFMKYLNKCFYECHDETEFQVS 269
            +  A+  VF +TR R S   I ++    LA+ F A+  F      C  E     EF+ S
Sbjct: 134 LIQVAVSRVFSQTRLRFSQPLIFEETEEKLAHVFQAHPTFESEFINCVTETETAAEFEAS 193

Query: 270 WDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRM 329
           WD ++ ++ + D+ WL+ +Y+ R +W  VF  DTF   + + + S  +++ F        
Sbjct: 194 WDSIVRRYYMEDNDWLQSIYNARQQWVRVFIRDTFYGELSTNEGSSILNSFFQGFVDAST 253

Query: 330 DVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMEL 389
            +   ++ +E+        EL+ D+   +  P ++  + +   A  +YT   F  F+ E 
Sbjct: 254 TMQMLIKQYEKAIDSWREKELKADYEATNSTPVMKTPSPMEKQAASLYTRAAFIKFQEEF 313

Query: 390 LGCMGVRMKEVCKDGEVCIYEAIEEGQ-QKVCKINYNLSTQDISCSCKLFERMGILCRHA 448
           +  + +    +   G    Y   + G+  K   ++++      +CSC++FE  GI+CRH 
Sbjct: 314 VETLAIPANIISDSGTHTTYRVAKFGEVHKGHTVSFDSLEVKANCSCQMFEYSGIICRHI 373

Query: 449 LKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSV 496
           L  F   N+  +P +Y+L+RWTKEAK    +R + E+   S+   +S+
Sbjct: 374 LAVFSAKNVLALPSRYLLRRWTKEAK----IRGTEEQPEFSNGCQESL 417

Putative transcription activator involved in regulating light control of development. May act as a negative regulator specific to phyB signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8J3|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 249/502 (49%), Gaps = 38/502 (7%)

Query: 7   NGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDR 66
           +G W++  +N +HNH+L   ++   ++      + +GG+D                    
Sbjct: 262 SGGWIVDRLNKDHNHDLEPGKKNAGMKKITD--DVTGGLD-------------------- 299

Query: 67  NVQFAK-KDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFF 125
           +V   +  D+ N++     N +       LL+YF+ K+ ED  FFYA++++      + F
Sbjct: 300 SVDLIELNDLSNHISSTRENTIGKEWYPVLLDYFQSKQAEDMGFFYAIELDSNGSCMSIF 359

Query: 126 WRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSY 185
           W D RS+     FGD V FD ++R   Y++  A F+G NHH + +L G A + DES  ++
Sbjct: 360 WADSRSRFACSQFGDAVVFDTSYRKGDYSVPFATFIGFNHHRQPVLLGGALVADESKEAF 419

Query: 186 VWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFA 245
            WLF+++L +M   +P+++  +++  + +A+  VF  T HR S   I    R NL + F 
Sbjct: 420 SWLFQTWLRAMSGRRPRSMVADQDLPIQQAVAQVFPGTHHRFSAWQIRSKERENLRS-FP 478

Query: 246 NLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFS 305
           N EF     KC Y+     EF   W  ++NK+ L D++WL+++Y  R+KW   +   +F 
Sbjct: 479 N-EFKYEYEKCLYQSQTTVEFDTMWSSLVNKYGLRDNMWLREIYEKREKWVPAYLRASFF 537

Query: 306 ANIDSVQRSDSIDTVFHQVSTKRMDVI-SFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQ 364
             I      D     F+  S   +  +  F+  +E+  ++   +E ++D    ++ P LQ
Sbjct: 538 GGI----HVDGTFDPFYGTSLNSLTSLREFISRYEQGLEQRREEERKEDFNSYNLQPFLQ 593

Query: 365 VWNGILNHAVYVYTSKIFNFFEMELLGC---MGVRMKEVCKDGEVCIYEAIEEGQQKVCK 421
               +      +YT  IF  F+ EL      +G++  E        + +   E ++    
Sbjct: 594 TKEPVEEQCRRLYTLTIFRIFQSELAQSYNYLGLKTYEEGAISRFLVRKCGNENEKHA-- 651

Query: 422 INYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRV 481
           + ++ S  + SCSC++FE  G+LCRH LK F+  ++ ++P +YIL RWTK A+ G V  V
Sbjct: 652 VTFSASNLNASCSCQMFEYEGLLCRHILKVFNLLDIRELPSRYILHRWTKNAEFGFVRDV 711

Query: 482 SNERHGLSSNTVKSVQSLRLSE 503
            +   G++S  +K++    L E
Sbjct: 712 ES---GVTSQDLKALMIWSLRE 730

Putative transcription activator involved in regulating light control of development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E7I5|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1

 Score =  224 bits (570), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 144/499 (28%), Positives = 257/499 (51%), Gaps = 29/499 (5%)

Query: 7   NGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDR 66
           +G W++  +N +HNH+L +P ++      +   + +GG+D     +  L  L NDFG + 
Sbjct: 283 SGGWIVDRLNKDHNHDL-EPGKKNDAGMKKIPDDGTGGLD-----SVDLIEL-NDFGNNH 335

Query: 67  NVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQA-TNFF 125
                KK   N + +E   +        LL+YF+ ++ ED  FFYAV+++  N +  + F
Sbjct: 336 ----IKKTRENRIGKEWYPL--------LLDYFQSRQTEDMGFFYAVELDVNNGSCMSIF 383

Query: 126 WRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSY 185
           W D R++     FGD V FD ++R   Y++  A  +G NHH + +L GCA + DES  ++
Sbjct: 384 WADSRARFACSQFGDSVVFDTSYRKGSYSVPFATIIGFNHHRQPVLLGCAMVADESKEAF 443

Query: 186 VWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFA 245
           +WLF+++L +M   +P++I  +++  + +A+  VF    HR S   I +  R NL   F 
Sbjct: 444 LWLFQTWLRAMSGRRPRSIVADQDLPIQQALVQVFPGAHHRYSAWQIREKERENLI-PFP 502

Query: 246 NLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFS 305
           + EF     KC Y+     EF   W  +INK+ L D +WL+++Y  R+ W   +   +F 
Sbjct: 503 S-EFKYEYEKCIYQTQTIVEFDSVWSALINKYGLRDDVWLREIYEQRENWVPAYLRASFF 561

Query: 306 ANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQV 365
           A I     + +I+  F         +  F+  +E+  ++   +E ++D    ++ P LQ 
Sbjct: 562 AGIPI---NGTIEPFFGASLDALTPLREFISRYEQALEQRREEERKEDFNSYNLQPFLQT 618

Query: 366 WNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEG-QQKVCKINY 424
              +      +YT  +F  F+ EL+        +  ++G +  +   + G + +   + +
Sbjct: 619 KEPVEEQCRRLYTLTVFRIFQNELVQSYNYLCLKTYEEGAISRFLVRKCGNESEKHAVTF 678

Query: 425 NLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNE 484
           + S  + SCSC++FE  G+LCRH LK F+  ++ ++P +YIL RWTK A+ G V  + + 
Sbjct: 679 SASNLNSSCSCQMFEHEGLLCRHILKVFNLLDIRELPSRYILHRWTKNAEFGFVRDMES- 737

Query: 485 RHGLSSNTVKSVQSLRLSE 503
             G+S+  +K++    L E
Sbjct: 738 --GVSAQDLKALMVWSLRE 754

Putative transcription activator involved in regulating light control of development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 190/400 (47%), Gaps = 14/400 (3%)

Query: 87  MEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDA 146
           ++ GD   + NYF R +  +P+FFY + VN   Q  N FW D  SK+    FGDV+  D+
Sbjct: 243 LKRGDSAAIYNYFCRMQLTNPNFFYLMDVNDEGQLRNVFWADAFSKVSCSYFGDVIFIDS 302

Query: 147 TFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFT 206
           ++   K+ +    F GVNHH K  L  C FL  E+  SY WL + +L  M  + P+TI T
Sbjct: 303 SYISGKFEIPLVTFTGVNHHGKTTLLSCGFLAGETMESYHWLLKVWLSVMKRS-PQTIVT 361

Query: 207 NENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEF 266
           +  + +  AI  VF ++  R S  HI++     L          K   K  YE     EF
Sbjct: 362 DRCKPLEAAISQVFPRSHQRFSLTHIMRKIPEKLGGLHNYDAVRKAFTKAVYETLKVVEF 421

Query: 267 QVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVST 326
           + +W  M++ F + ++ WL+ LY  R KW  V+  DTF A I +    +++   F +   
Sbjct: 422 EAAWGFMVHNFGVIENEWLRSLYEERAKWAPVYLKDTFFAGIAAAHPGETLKPFFERYVH 481

Query: 327 KRMDVISFVQHFEEKTKEMHLDELEDDHFCKHV-VPRLQVWNGILNHAVYVYTSKIFNFF 385
           K+  +  F+  +E   ++ H +E   D   + +    L+           +YT  +F  F
Sbjct: 482 KQTPLKEFLDKYELALQKKHREETLSDIESQTLNTAELKTKCSFETQLSRIYTRDMFKKF 541

Query: 386 EM---ELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCK-------INYNLSTQDISCSC 435
           ++   E+  C       V  DG   I+   E  + +  +       + YN S  ++ C C
Sbjct: 542 QIEVEEMYSCFSTTQVHV--DGPFVIFLVKERVRGESSRREIRDFEVLYNRSVGEVRCIC 599

Query: 436 KLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKK 475
             F   G LCRHAL   +FN + +IP++YIL RW K+ K+
Sbjct: 600 SCFNFYGYLCRHALCVLNFNGVEEIPLRYILPRWRKDYKR 639

Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1

 Score =  192 bits (489), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 217/463 (46%), Gaps = 22/463 (4%)

Query: 98  YFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLIC 157
           +F   + + P FFYAV  +   +  N FW D ++K DY  F DVV FD  +  N Y +  
Sbjct: 176 HFMEMQDKQPGFFYAVDFDSDKRVRNVFWLDAKAKHDYCSFSDVVLFDTFYVRNGYRIPF 235

Query: 158 APFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIE 217
           APF+GV+HH + +L GCA + + S  +Y WLF ++L+++G   P  + T++++ +S  + 
Sbjct: 236 APFIGVSHHRQYVLLGCALIGEVSESTYSWLFRTWLKAVGGQAPGVMITDQDKLLSDIVV 295

Query: 218 TVFMKTRHRLSTGHIVKDARRNLANQFANLE--FMKYLNKCFYECHDETEFQVSWDDMIN 275
            VF   RH      ++      L N F + +  FM+    C      +  F+  W +MI 
Sbjct: 296 EVFPDVRHIFCLWSVLSKISEML-NPFVSQDDGFMESFGNCVASSWTDEHFERRWSNMIG 354

Query: 276 KFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFV 335
           KF L ++ W++ L+  R KW   +      A +   +RS SI + F +          F 
Sbjct: 355 KFELNENEWVQLLFRDRKKWVPHYFHGICLAGLSGPERSGSIASHFDKYMNSEATFKDFF 414

Query: 336 QHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGV 395
           + + +  +     E +DD   +   P L+           +YT   F  F+ E+ G +  
Sbjct: 415 ELYMKFLQYRCDVEAKDDLEYQSKQPTLRSSLAFEKQLSLIYTDAAFKKFQAEVPGVVSC 474

Query: 396 RMKEVCKDGEVCIY--EAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFD 453
           ++++  +DG   I+  E  EE Q     +N  L   D  CSC LFE  G LC+HA+    
Sbjct: 475 QLQKEREDGTTAIFRIEDFEERQNFFVALNNEL--LDACCSCHLFEYQGFLCKHAILVLQ 532

Query: 454 FNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYS 513
             +++++P QYILKRW+   KKG      N++     N +      R  +L      +  
Sbjct: 533 SADVSRVPSQYILKRWS---KKGNNKEDKNDKCATIDNRMA-----RFDDLCRRFVKLGV 584

Query: 514 IASLSDSGTKIVKEKLAEAMELLEKDEEIVNRLAHAKKVDSSP 556
           +ASLSD   K        A++LLE+  +    + ++ K  S P
Sbjct: 585 VASLSDEACKT-------ALKLLEETVKHCVSMDNSSKFPSEP 620

Putative transcription activator involved in regulating light control of development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	573
357149440	696	PREDICTED: protein FAR1-RELATED SEQUENCE	0.795	0.655	0.417	1e-107
115466626	780	Os06g0166100 [Oryza sativa Japonica Grou	0.832	0.611	0.416	1e-105
218197656	819	hypothetical protein OsI_21811 [Oryza sa	0.832	0.582	0.416	1e-105
222635024	792	hypothetical protein OsJ_20251 [Oryza sa	0.832	0.602	0.416	1e-105
242050362	781	hypothetical protein SORBIDRAFT_02g03456	0.830	0.609	0.406	1e-103
357118619	761	PREDICTED: protein FAR1-RELATED SEQUENCE	0.830	0.625	0.412	1e-102
326487428	773	predicted protein [Hordeum vulgare subsp	0.828	0.614	0.413	1e-102
414886879	779	TPA: FAR1-domain family sequence isoform	0.830	0.611	0.4	1e-101
326498635	777	predicted protein [Hordeum vulgare subsp	0.825	0.608	0.406	1e-101
414886878	690	TPA: FAR1-domain family sequence [Zea ma	0.830	0.689	0.4	1e-101

>gi|357149440|ref|XP_003575113.1| PREDICTED: protein FAR1-RELATED SEQUENCE 7-like [Brachypodium distachyon]

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/482 (41%), Positives = 289/482 (59%), Gaps = 26/482 (5%)

Query: 1   MRFTVSN-GVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLG 59
           +RF V++ G W +  +  +HNH LA PEER  LRS R +           ++  P SY  
Sbjct: 164 VRFRVNDHGEWKVIRLVSDHNHNLASPEERHLLRSARSLIAGRSSSVDSSKQDLPHSY-- 221

Query: 60  NDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLN 119
                            N +P+        GD+QGL+N+ + +  ED  F++ VQ+++  
Sbjct: 222 -----------------NGIPKSPA--AGTGDLQGLVNHLKNRANEDGMFYWDVQIDRGG 262

Query: 120 QATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLD 179
           + TNFFWRDGRS++DYDCFGDVV FD+T+RLN+ NLICAPFVGVNHHW+  ++GCA L D
Sbjct: 263 RMTNFFWRDGRSRIDYDCFGDVVVFDSTYRLNRQNLICAPFVGVNHHWQTAIYGCALLAD 322

Query: 180 ESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRN 239
           ES  S+VWLF+SFLE+MGN  P++IFTN+++ MSKAIE VF  T HR++  HI K+A   
Sbjct: 323 ESLSSFVWLFKSFLEAMGNRHPRSIFTNQDQVMSKAIEEVFPSTCHRIAHWHIQKNAASR 382

Query: 240 LANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVF 299
           L     +  F K   KC   C  E EF+ +W +M+ +F L D+ WL KLY L+ KW   F
Sbjct: 383 LGALNGSKAFNKMFKKCMQGCDSEAEFEETWAEMLREFKLQDNKWLNKLYKLKQKWSSAF 442

Query: 300 NSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHV 359
           N  TF   +++  + DS+  +F  ++ K   + + +   ++ T++    EL++D  C   
Sbjct: 443 NKCTFDGGVENEPQCDSLSNIFSCIADKLTSLSAIIVAVDKLTEDWREKELDEDTRCCQK 502

Query: 360 VPRLQVWNG-ILNHAVYVYTSKIFNFFEMELL-GCMGVRMKEV-CKDGEVCIYEAIEEGQ 416
            P   + +  ILNHA  +YT +I+  FE   L GC   + KE+ C+DG    +E   +G+
Sbjct: 503 PPACIIKHSDILNHAAKLYTHRIYKLFETYFLDGCGATKFKELRCEDGNTYRFEMTMQGR 562

Query: 417 -QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKK 475
             +VC ++ NLST  ++CSC  FE MG+LC HALKA    N+ +IP  YILKRWTK+AK+
Sbjct: 563 GSRVCTVHLNLSTMQLTCSCSKFETMGLLCPHALKALSIKNVCKIPETYILKRWTKDAKQ 622

Query: 476 GI 477
            +
Sbjct: 623 WV 624

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115466626|ref|NP_001056912.1| Os06g0166100 [Oryza sativa Japonica Group] gi|55296036|dbj|BAD67598.1| putative far-red impaired response protein [Oryza sativa Japonica Group] gi|55296143|dbj|BAD67861.1| putative far-red impaired response protein [Oryza sativa Japonica Group] gi|113594952|dbj|BAF18826.1| Os06g0166100 [Oryza sativa Japonica Group]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/485 (41%), Positives = 289/485 (59%), Gaps = 8/485 (1%)

Query: 1   MRFTV-SNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTK--PLSY 57
           +RF V   G W +      HNH+LAKP ER  LRS + +     GV   +  T+  P++ 
Sbjct: 116 IRFRVDEKGRWTVIRFVPTHNHQLAKPGERHMLRSAKSLAVGKSGVIDPQASTESHPING 175

Query: 58  LGNDFGGD--RNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQV 115
             +  G D      +  +D  N++  +   ++E GD Q L+NYF+R+  E+  F++ VQV
Sbjct: 176 FSHMIGSDIVEPPGYTIRDCYNHVSMQGITIIEAGDSQSLVNYFKRRTNEEGMFYWDVQV 235

Query: 116 NQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCA 175
           +Q  + TNFF+RD +S+ D+DCFGD V FD TFR NKY+L+CAPFVGVNHHW+N++FGCA
Sbjct: 236 DQEGRMTNFFFRDAKSRNDFDCFGDAVIFDTTFRTNKYSLVCAPFVGVNHHWQNIVFGCA 295

Query: 176 FLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKD 235
           FLLDES+ SYVWLF+SFLESMG   PK+IFT++++A+++A+E VF  T+H  S  HI+K+
Sbjct: 296 FLLDESSASYVWLFKSFLESMGGRSPKSIFTDQDDAITQAVELVFPNTQHCFSYWHILKN 355

Query: 236 ARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKW 295
           A+ +L     +  F     KC    + ETE + SW  M+N++ L ++ WL  LY  R+KW
Sbjct: 356 AQSHLGTVNTSQTFQNMFIKCMQGPNSETELEESWATMLNEYKLQENSWLSDLYRSRNKW 415

Query: 296 CLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHF 355
           C  FN DTF   I+S Q  +  +  F  +S +   +  F    E+  K +  +E E+D  
Sbjct: 416 CSAFNKDTFDGGINSSQWGEVSNNTFTGISDESTPLTRFALLLEKVFKGLRRNESEEDFR 475

Query: 356 CKHVVP-RLQVWNGILNHAVYVYTSKIFNFFEMELL-GCMGVRMKEVCKDGEVCIYEAIE 413
           C    P R    + +L  A   YT KI+  FE E L GC      E    G +  +E   
Sbjct: 476 CSQTAPVRAIKHSTVLKQAAESYTHKIYKLFEAEFLDGCGATSCHESSCGGNLLRFEITM 535

Query: 414 EGQ-QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKE 472
           +G+  KV  +  + ST +ISC C+ FERMG+LC HALKAF   N+  IP +YI KRWTK+
Sbjct: 536 QGRGSKVWTVLLDTSTMEISCGCRKFERMGLLCSHALKAFSLQNVDTIPEKYISKRWTKD 595

Query: 473 AKKGI 477
           A++ +
Sbjct: 596 ARRSM 600

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218197656|gb|EEC80083.1| hypothetical protein OsI_21811 [Oryza sativa Indica Group]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/485 (41%), Positives = 289/485 (59%), Gaps = 8/485 (1%)

Query: 1   MRFTV-SNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTK--PLSY 57
           +RF V   G W +      HNH+LAKP ER  LRS + +     GV   +  T+  P++ 
Sbjct: 116 IRFRVDEKGRWTVIRFVPTHNHQLAKPGERHMLRSAKSLAVGKSGVIDPQASTESHPING 175

Query: 58  LGNDFGGD--RNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQV 115
             +  G D      +  +D  N++  +   ++E GD Q L+NYF+R+  E+  F++ VQV
Sbjct: 176 FSHMIGSDIVEPPGYTIRDCYNHVSMQGITIIEAGDSQSLVNYFKRRTNEEGMFYWDVQV 235

Query: 116 NQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCA 175
           +Q  + TNFF+RD +S+ D+DCFGD V FD TFR NKY+L+CAPFVGVNHHW+N++FGCA
Sbjct: 236 DQEGRMTNFFFRDAKSRNDFDCFGDAVIFDTTFRTNKYSLVCAPFVGVNHHWQNIVFGCA 295

Query: 176 FLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKD 235
           FLLDES+ SYVWLF+SFLESMG   PK+IFT++++A+++A+E VF  T+H  S  HI+K+
Sbjct: 296 FLLDESSASYVWLFKSFLESMGGRSPKSIFTDQDDAITQAVELVFPNTQHCFSYWHILKN 355

Query: 236 ARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKW 295
           A+ +L     +  F     KC    + ETE + SW  M+N++ L ++ WL  LY  R+KW
Sbjct: 356 AQSHLGTVNTSQTFQNMFIKCMQGPNSETELEESWATMLNEYKLQENSWLSDLYRSRNKW 415

Query: 296 CLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHF 355
           C  FN DTF   I+S Q  +  +  F  +S +   +  F    E+  K +  +E E+D  
Sbjct: 416 CSAFNKDTFDGGINSSQWGEVSNNTFTGISDESTPLTRFALLLEKVFKGLRRNESEEDFR 475

Query: 356 CKHVVP-RLQVWNGILNHAVYVYTSKIFNFFEMELL-GCMGVRMKEVCKDGEVCIYEAIE 413
           C    P R    + +L  A   YT KI+  FE E L GC      E    G +  +E   
Sbjct: 476 CSQTAPVRAIKHSTVLKQAAESYTHKIYKLFEAEFLDGCGATSCHESSCGGNLLRFEITM 535

Query: 414 EGQ-QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKE 472
           +G+  KV  +  + ST +ISC C+ FERMG+LC HALKAF   N+  IP +YI KRWTK+
Sbjct: 536 QGRGSKVWTVLLDTSTMEISCGCRKFERMGLLCSHALKAFSLQNMDTIPEKYISKRWTKD 595

Query: 473 AKKGI 477
           A++ +
Sbjct: 596 ARRSM 600

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222635024|gb|EEE65156.1| hypothetical protein OsJ_20251 [Oryza sativa Japonica Group]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/485 (41%), Positives = 289/485 (59%), Gaps = 8/485 (1%)

Query: 1   MRFTV-SNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTK--PLSY 57
           +RF V   G W +      HNH+LAKP ER  LRS + +     GV   +  T+  P++ 
Sbjct: 116 IRFRVDEKGRWTVIRFVPTHNHQLAKPGERHMLRSAKSLAVGKSGVIDPQASTESHPING 175

Query: 58  LGNDFGGD--RNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQV 115
             +  G D      +  +D  N++  +   ++E GD Q L+NYF+R+  E+  F++ VQV
Sbjct: 176 FSHMIGSDIVEPPGYTIRDCYNHVSMQGITIIEAGDSQSLVNYFKRRTNEEGMFYWDVQV 235

Query: 116 NQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCA 175
           +Q  + TNFF+RD +S+ D+DCFGD V FD TFR NKY+L+CAPFVGVNHHW+N++FGCA
Sbjct: 236 DQEGRMTNFFFRDAKSRNDFDCFGDAVIFDTTFRTNKYSLVCAPFVGVNHHWQNIVFGCA 295

Query: 176 FLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKD 235
           FLLDES+ SYVWLF+SFLESMG   PK+IFT++++A+++A+E VF  T+H  S  HI+K+
Sbjct: 296 FLLDESSASYVWLFKSFLESMGGRSPKSIFTDQDDAITQAVELVFPNTQHCFSYWHILKN 355

Query: 236 ARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKW 295
           A+ +L     +  F     KC    + ETE + SW  M+N++ L ++ WL  LY  R+KW
Sbjct: 356 AQSHLGTVNTSQTFQNMFIKCMQGPNSETELEESWATMLNEYKLQENSWLSDLYRSRNKW 415

Query: 296 CLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHF 355
           C  FN DTF   I+S Q  +  +  F  +S +   +  F    E+  K +  +E E+D  
Sbjct: 416 CSAFNKDTFDGGINSSQWGEVSNNTFTGISDESTPLTRFALLLEKVFKGLRRNESEEDFR 475

Query: 356 CKHVVP-RLQVWNGILNHAVYVYTSKIFNFFEMELL-GCMGVRMKEVCKDGEVCIYEAIE 413
           C    P R    + +L  A   YT KI+  FE E L GC      E    G +  +E   
Sbjct: 476 CSQTAPVRAIKHSTVLKQAAESYTHKIYKLFEAEFLDGCGATSCHESSCGGNLLRFEITM 535

Query: 414 EGQ-QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKE 472
           +G+  KV  +  + ST +ISC C+ FERMG+LC HALKAF   N+  IP +YI KRWTK+
Sbjct: 536 QGRGSKVWTVLLDTSTMEISCGCRKFERMGLLCSHALKAFSLQNVDTIPEKYISKRWTKD 595

Query: 473 AKKGI 477
           A++ +
Sbjct: 596 ARRSM 600

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242050362|ref|XP_002462925.1| hypothetical protein SORBIDRAFT_02g034560 [Sorghum bicolor] gi|241926302|gb|EER99446.1| hypothetical protein SORBIDRAFT_02g034560 [Sorghum bicolor]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/485 (40%), Positives = 283/485 (58%), Gaps = 9/485 (1%)

Query: 1   MRFTV-SNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGV--DVGRRRTKPLSY 57
           +RF V   G W +      HNH+LAKP ER  LRS + +     GV        + P++ 
Sbjct: 116 IRFRVDEKGRWTVIRFVPVHNHQLAKPGERHMLRSAKSLAVGKSGVIDPSASTESHPING 175

Query: 58  LGNDFGGD--RNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQV 115
             N   GD   N  +  ++  N +  +   ++E GD Q L++YF+R+  E+  F++ VQV
Sbjct: 176 FSN-MTGDIAENSGYTIRECYNQVCMQNITIIEAGDSQSLVSYFKRRTNEEGMFYWDVQV 234

Query: 116 NQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCA 175
           +Q  + TNFF+RDG+S+ DY CFGD + FD T+R NKYNLICAPFVGV+HHW+N++FGCA
Sbjct: 235 DQEGRMTNFFYRDGKSRNDYGCFGDAIIFDTTYRTNKYNLICAPFVGVDHHWQNVVFGCA 294

Query: 176 FLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKD 235
           FLLDES  SY W+F+SFLESMG   PK+IFT+++EA+ +A+E VF  T+H  S  HIVK+
Sbjct: 295 FLLDESVTSYAWVFKSFLESMGGRSPKSIFTDQDEAIMQAVEQVFPNTQHCFSYWHIVKN 354

Query: 236 ARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKW 295
           A+ +L +   +  F     KC      E +F+ SW  MI ++ L D+ WL  LY+   KW
Sbjct: 355 AQSHLGSLNTSQAFQSMFTKCMQGSDSEEDFKESWTAMIQEYKLQDNSWLIDLYAFHRKW 414

Query: 296 CLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHF 355
           C  FN DTF   I+S Q  +    +F+ +S +   +  F    E+  K++  +E E+D  
Sbjct: 415 CSAFNKDTFDGGINSSQWGEVSSNIFNGISDENTSLTRFALLLEKVVKDLRRNESEEDFR 474

Query: 356 CKHVVP-RLQVWNGILNHAVYVYTSKIFNFFEMELL-GCMGVRMKEVCKDGEVCIYEAIE 413
           C    P R    + +L  A   YT +I+  FE E L GC      E    G +  +    
Sbjct: 475 CSQTAPVRAIKHSTVLKQAAESYTHRIYKLFEAEFLDGCGATSCHETSSGGNLLRFGITM 534

Query: 414 EGQ-QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKE 472
           +G+  KV  +  + ST +ISC C+ FERMG+LC HALK F   N+  IP +Y+LKRWTK+
Sbjct: 535 QGRGSKVWDVVLDTSTMEISCGCRKFERMGLLCSHALKVFTLQNVDTIPEKYVLKRWTKD 594

Query: 473 AKKGI 477
           A++ +
Sbjct: 595 ARRSM 599

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357118619|ref|XP_003561049.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Brachypodium distachyon]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/485 (41%), Positives = 287/485 (59%), Gaps = 9/485 (1%)

Query: 1   MRFTVSN-GVWVISHINFEHNHELAKPEERQFLRSCRKI-FEASGGVDVGRRRTKPLSYL 58
           +RF V + G W +      HNH+LAKP ER  LRS +      SG +D     + P++ L
Sbjct: 111 VRFRVDDKGRWTVIRFIPVHNHQLAKPGERHMLRSAKSFAVGKSGVIDPASAESHPMNGL 170

Query: 59  GNDFGGDRNVQ---FAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQV 115
            +D   D  V+   +  +D  N+   +   ++  GD Q L++YF+R+  E+  F++ VQV
Sbjct: 171 -SDRTVDDTVEPPGYTIRDCYNHENVQGITLIGAGDCQSLVSYFKRRTNEEGMFYWDVQV 229

Query: 116 NQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCA 175
           +Q  + TNFF+RDG+SK DYDCFGD V FD T+R NKY+LICAPFVGVNHHW N++FGCA
Sbjct: 230 DQEGRMTNFFFRDGKSKNDYDCFGDAVIFDTTYRTNKYSLICAPFVGVNHHWHNIVFGCA 289

Query: 176 FLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKD 235
           FLLD+ST SYVWLF+SFLESMG   PK+IFT+++EA+ +A E VF  T+H  S  HI+K+
Sbjct: 290 FLLDDSTASYVWLFKSFLESMGGRSPKSIFTDQDEAIMQAAEQVFPNTQHCFSYWHILKN 349

Query: 236 ARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKW 295
           A+ +L     + +F     KC      + E + SW  M++++ L D+ WL  LY   ++W
Sbjct: 350 AQSHLGTVNTSQDFQNMFMKCMQGSDTKMELEESWAAMLHEYKLQDNDWLNDLYRFHNRW 409

Query: 296 CLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHF 355
           C  FN DTF   I+S Q  +  + +   ++ +   +  F    E+  K +  +E E+D  
Sbjct: 410 CSAFNKDTFDGGINSSQWGEVSNNILTGIADESTSLTRFALLLEKAVKSLRRNESEEDFR 469

Query: 356 CKHVVP-RLQVWNGILNHAVYVYTSKIFNFFEMELL-GCMGVRMKEVCKDGEVCIYEAIE 413
           C    P R    + +L  A   YT +I+  FE E L GC      E    G +  +E   
Sbjct: 470 CSQTAPVRAIKHSTVLKQAAESYTHRIYKLFEAEFLDGCGATSCHENSCGGNLLRFEITM 529

Query: 414 EGQ-QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKE 472
           +G+  KV  +  + ST +ISC C+ FERMG+LC HALKAF   N+  IP +YILKRWTK+
Sbjct: 530 QGRGSKVWTVLLDTSTMEISCGCRKFERMGLLCSHALKAFSLQNVDTIPEKYILKRWTKD 589

Query: 473 AKKGI 477
           A++ +
Sbjct: 590 ARRSM 594

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326487428|dbj|BAJ89698.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/491 (41%), Positives = 276/491 (56%), Gaps = 16/491 (3%)

Query: 1   MRFTV-SNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLG 59
           +RF V S G W +  I  EHNHEL  PEE   LRS R +     G        +  S  G
Sbjct: 157 VRFRVDSEGQWRVIQIIPEHNHELVPPEEIHLLRSVRILSIPKPGTLNAMVNAEIQSMHG 216

Query: 60  N----DFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQV 115
           +    D G + + Q + +            ++EP D + L+ Y +R+  E   F++ VQV
Sbjct: 217 SLRAHDDGAECHSQVSIQSYA---------LLEPEDAEALVGYLKRRTIEQGMFYWDVQV 267

Query: 116 NQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCA 175
           +Q  Q TNFFWRDGRS++DYDCFGDVV FD ++R NKYN+ICAPFVG+NHH +N++FGCA
Sbjct: 268 DQEGQMTNFFWRDGRSRVDYDCFGDVVVFDTSYRTNKYNMICAPFVGINHHMQNVMFGCA 327

Query: 176 FLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKD 235
           F+LDES  SY WL +SFLESMG   PKTIFT++NE +SKAIE +  +TRH L   HI K+
Sbjct: 328 FMLDESLTSYEWLLKSFLESMGGCPPKTIFTDQNETISKAIEVILPETRHCLCQWHIEKN 387

Query: 236 ARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKW 295
            + +L     +  F     KC  +C  E EF+ +W  M+++ +L DH WL  L+  R KW
Sbjct: 388 LQAHLDTPNGSGTFHSMFMKCMKDCESEAEFEETWAMMLHEHNLQDHQWLTDLFEQRHKW 447

Query: 296 CLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHF 355
           C   +   F   I S+  + S   V   ++ +     +F   F++       +E  DD  
Sbjct: 448 CTALHKVAFDCGIRSLDMNFSSHNVLGSIADESTSPTNFALEFDKLVGSWRTNESVDDIQ 507

Query: 356 CKHVVPRLQV-WNGILNHAVYVYTSKIFNFFEMELL-GCMGVRMKEVCKDGEVCIYEAIE 413
           C  + P   V  N IL HA  VYT K++   E E L GC G   +E+     +  +E I 
Sbjct: 508 CNQISPESSVKQNSILQHAAEVYTHKVYKSLETEFLDGCSGTSYQEMQCSETLYRFEFIM 567

Query: 414 EGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEA 473
           +   KVC +  + ST ++SCSCK FE MGILC HAL A    NL +IP  Y+LKRWTK  
Sbjct: 568 QSGPKVCLVYLDTSTMELSCSCKKFEMMGILCLHALNALGLKNLDKIPESYVLKRWTKYV 627

Query: 474 KKGIVVRVSNE 484
           +KG  V  S++
Sbjct: 628 RKGTYVFPSDQ 638

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414886879|tpg|DAA62893.1| TPA: FAR1-domain family sequence isoform 1 [Zea mays] gi|414886880|tpg|DAA62894.1| TPA: FAR1-domain family sequence isoform 2 [Zea mays]

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/485 (40%), Positives = 282/485 (58%), Gaps = 9/485 (1%)

Query: 1   MRFTV-SNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGV--DVGRRRTKPLSY 57
           +RF V   G W +      HNH+LAKP ER  LRS + +     GV   +      P++ 
Sbjct: 116 IRFRVDEKGRWTVIRFVPVHNHQLAKPGERHMLRSAKSLAVGKSGVIDPLASTEAHPING 175

Query: 58  LGNDFGGD--RNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQV 115
             +D  GD   N  +  ++  N +  +   ++E GD Q L++YF+ K  E+  F++ VQV
Sbjct: 176 F-SDMTGDIVENSGYTIRECYNQVGMQSITVIEAGDSQSLVSYFKHKTNEEGMFYWDVQV 234

Query: 116 NQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCA 175
           +Q  + TNFF+RDG+S+ DY CFGD + FD T+R NKYNLICAPFVGV+HHW+N++FGCA
Sbjct: 235 DQEGRMTNFFYRDGKSRNDYGCFGDAIIFDTTYRTNKYNLICAPFVGVDHHWQNVVFGCA 294

Query: 176 FLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKD 235
           FLLDES  SY W+F+SFLESMG   PK+IFT+++EA+ +A++ VF  T+H  S  HI+K+
Sbjct: 295 FLLDESVTSYAWVFKSFLESMGGRSPKSIFTDQDEAIMQAVKQVFPNTQHCFSYWHILKN 354

Query: 236 ARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKW 295
           A+ +L +   +  F     KC      E +F+ SW  MI ++ L D+ WL  LY+   KW
Sbjct: 355 AQSHLGSLNTSQAFQSMFTKCMQGSDSEEDFKESWTAMIQEYKLQDNNWLIDLYTFHHKW 414

Query: 296 CLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHF 355
           C  FN DTF   I+S Q  +    + + +S +   +  F    E+  K++  +E E+D  
Sbjct: 415 CSAFNKDTFDGGINSSQWGEVSSNILNGISDENTSLTRFALLLEKVVKDLRRNESEEDFR 474

Query: 356 CKHVVP-RLQVWNGILNHAVYVYTSKIFNFFEMELL-GCMGVRMKEVCKDGEVCIYEAIE 413
           C    P R    + +L  A   YT +I+  FE E L GC      E    G +  +    
Sbjct: 475 CSQTAPVRAIKHSTVLKQAAESYTHRIYKLFEAEFLDGCGATSCHETSSGGNLLRFGITM 534

Query: 414 EGQ-QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKE 472
           +G+  KV  +  + ST +ISC C+ FERMG+LC HALK F   N+  IP +Y+LKRWTK+
Sbjct: 535 QGRGSKVWDVVLDTSTMEISCGCRKFERMGLLCSHALKVFTLQNVDTIPEKYVLKRWTKD 594

Query: 473 AKKGI 477
           A++ +
Sbjct: 595 ARRSM 599

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326498635|dbj|BAK02303.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/489 (40%), Positives = 283/489 (57%), Gaps = 16/489 (3%)

Query: 1   MRFTV-SNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLG 59
           +RF V   G W +      HNH+LAKP ER  LRS +       GV       +  +  G
Sbjct: 116 VRFRVDEKGRWTVIRFVPVHNHQLAKPGERHLLRSAKSFAVGKSGVIDPAESAESHAMNG 175

Query: 60  NDFGGDRNVQFAKKDMGNYLPREMGN--------MMEPGDVQGLLNYFRRKKCEDPSFFY 111
           +    DR V    +  G Y  R+  N        ++  GD+Q L++YF+R+  E+  F++
Sbjct: 176 S---SDRTVGDISEPPG-YTTRDCYNRDNVQNITLIAAGDIQSLVSYFKRRTNEEGMFYW 231

Query: 112 AVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNML 171
            VQV+Q  + TNFF+RDG+S+ DYDCFGD V FD T+R NKY+LICAPFVGVNHHW N++
Sbjct: 232 DVQVDQEGRMTNFFFRDGKSRSDYDCFGDAVIFDTTYRTNKYSLICAPFVGVNHHWHNIV 291

Query: 172 FGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGH 231
           FG AFLLD+ST SYVWLF+SFLESMG   PK+IFT+++EA+ +A E VF  T+H  S  H
Sbjct: 292 FGFAFLLDDSTASYVWLFKSFLESMGGRSPKSIFTDQDEAIMQAAEQVFPNTQHCFSYWH 351

Query: 232 IVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSL 291
           I+K+A+ +L     +  F     KC   C  E E Q SWD M++++ L D+ WL  LY  
Sbjct: 352 ILKNAQSHLGTVNTSQAFQNMFMKCMQGCDIEMELQESWDAMLDEYKLQDNDWLNGLYKF 411

Query: 292 RDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELE 351
            ++WC VFN DTF   I+S Q  +  + +   ++ +   +  F    E+  K +  +E E
Sbjct: 412 HNRWCSVFNQDTFDGGINSSQWGEVSNNILTGIADESTSLTRFALLLEKVVKTLRRNESE 471

Query: 352 DDHFCKHVVP-RLQVWNGILNHAVYVYTSKIFNFFEMELL-GCMGVRMKEVCKDGEVCIY 409
           +D  C    P R    + +L  A   YT +++  FE E L GC      E    G +  +
Sbjct: 472 EDFRCSQTAPVRAIKHSTVLKQAAESYTHRLYKLFEAEFLDGCGATSCHESSCGGSLLRF 531

Query: 410 EAIEEGQ-QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKR 468
           E   +G+  K+  +  + ST +ISC C+ FERMG+LC HA+KAF   N+  +P +YILKR
Sbjct: 532 EITMQGRGSKMWTVLLDTSTMEISCGCRKFERMGLLCSHAMKAFSLQNVDMVPEKYILKR 591

Query: 469 WTKEAKKGI 477
           WTK+A++ +
Sbjct: 592 WTKDARRSM 600

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414886878|tpg|DAA62892.1| TPA: FAR1-domain family sequence [Zea mays]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/485 (40%), Positives = 282/485 (58%), Gaps = 9/485 (1%)

Query: 1   MRFTV-SNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGV--DVGRRRTKPLSY 57
           +RF V   G W +      HNH+LAKP ER  LRS + +     GV   +      P++ 
Sbjct: 116 IRFRVDEKGRWTVIRFVPVHNHQLAKPGERHMLRSAKSLAVGKSGVIDPLASTEAHPING 175

Query: 58  LGNDFGGD--RNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQV 115
             +D  GD   N  +  ++  N +  +   ++E GD Q L++YF+ K  E+  F++ VQV
Sbjct: 176 F-SDMTGDIVENSGYTIRECYNQVGMQSITVIEAGDSQSLVSYFKHKTNEEGMFYWDVQV 234

Query: 116 NQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCA 175
           +Q  + TNFF+RDG+S+ DY CFGD + FD T+R NKYNLICAPFVGV+HHW+N++FGCA
Sbjct: 235 DQEGRMTNFFYRDGKSRNDYGCFGDAIIFDTTYRTNKYNLICAPFVGVDHHWQNVVFGCA 294

Query: 176 FLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKD 235
           FLLDES  SY W+F+SFLESMG   PK+IFT+++EA+ +A++ VF  T+H  S  HI+K+
Sbjct: 295 FLLDESVTSYAWVFKSFLESMGGRSPKSIFTDQDEAIMQAVKQVFPNTQHCFSYWHILKN 354

Query: 236 ARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKW 295
           A+ +L +   +  F     KC      E +F+ SW  MI ++ L D+ WL  LY+   KW
Sbjct: 355 AQSHLGSLNTSQAFQSMFTKCMQGSDSEEDFKESWTAMIQEYKLQDNNWLIDLYTFHHKW 414

Query: 296 CLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHF 355
           C  FN DTF   I+S Q  +    + + +S +   +  F    E+  K++  +E E+D  
Sbjct: 415 CSAFNKDTFDGGINSSQWGEVSSNILNGISDENTSLTRFALLLEKVVKDLRRNESEEDFR 474

Query: 356 CKHVVP-RLQVWNGILNHAVYVYTSKIFNFFEMELL-GCMGVRMKEVCKDGEVCIYEAIE 413
           C    P R    + +L  A   YT +I+  FE E L GC      E    G +  +    
Sbjct: 475 CSQTAPVRAIKHSTVLKQAAESYTHRIYKLFEAEFLDGCGATSCHETSSGGNLLRFGITM 534

Query: 414 EGQ-QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKE 472
           +G+  KV  +  + ST +ISC C+ FERMG+LC HALK F   N+  IP +Y+LKRWTK+
Sbjct: 535 QGRGSKVWDVVLDTSTMEISCGCRKFERMGLLCSHALKVFTLQNVDTIPEKYVLKRWTKD 594

Query: 473 AKKGI 477
           A++ +
Sbjct: 595 ARRSM 599

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI3G45470.1 annotation not avaliable (723 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	573
PLN03097	846	PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY	3e-85
pfam10551	88	pfam10551, MULE, MULE transposase domain	7e-19
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	2e-04
pfam04434	38	pfam04434, SWIM, SWIM zinc finger	2e-04

>gnl|CDD|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

 Score =  282 bits (722), Expect = 3e-85
 Identities = 173/533 (32%), Positives = 259/533 (48%), Gaps = 35/533 (6%)

Query: 6   SNGVWVISHINFEHNHEL--AKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFG 63
            +G WVI     EHNHEL  A+    Q     RK++ A                +   F 
Sbjct: 171 PDGKWVIHSFVKEHNHELLPAQAVSEQ----TRKMYAA----------------MARQFA 210

Query: 64  GDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATN 123
             +NV   K D  +   +     +E GD + LL++F + +  + +FFYAV + +  +  N
Sbjct: 211 EYKNVVGLKNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKN 270

Query: 124 FFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTH 183
            FW D +S+ DY  F DVVSFD T+  NKY +  A FVGVN H++ ML GCA + DES  
Sbjct: 271 LFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAA 330

Query: 184 SYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQ 243
           +Y WL +++L +MG   PK I T++++AM   I  VF    H     HI+     NL   
Sbjct: 331 TYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQV 390

Query: 244 FA-NLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSD 302
              +  FM    KC Y    E EF   W  ++++F L +  W++ LY  R +W   +  D
Sbjct: 391 IKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRD 450

Query: 303 TFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPR 362
            F A + +VQRS+SI+  F +   K+  V  FV+ +E   ++ + +E + D    +  P 
Sbjct: 451 AFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPA 510

Query: 363 LQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKI 422
           L+  + +      VYT  +F  F++E+LG +    K   +D     +   +  + +   +
Sbjct: 511 LKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTV 570

Query: 423 NYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVS 482
            +N +  ++SC C+LFE  G LCRHAL       L+ IP QYILKRWTK+AK        
Sbjct: 571 TWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAK-------- 622

Query: 483 NERH--GLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAM 533
             RH  G  S  V+S +  R ++L      +   ASLS     I    L EA 
Sbjct: 623 -SRHLLGEESEQVQS-RVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAF 673

Length = 846

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 81.3 bits (201), Expect = 7e-19
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 146 ATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIF 205
            T+  NKY       VGV+HH +      A + DES  S+ W  E   +++G   P TI 
Sbjct: 1   GTYLTNKYKG----AVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGRPPLTII 56

Query: 206 TNENEAMSKAIETVFMKTRHRLSTGHIVKDAR 237
           ++ ++ + KAI+ VF   RHRL   HI+++ +
Sbjct: 57  SDGDKGLKKAIKEVFPNARHRLCLWHILRNLK 88

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 432 SCSCKLFERMGILCRHALKAFDFNNL 457
           +CSC+ F+  GI CRHAL A     L
Sbjct: 2   TCSCRKFQLSGIPCRHALAAAIHIGL 27

Length = 28

>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 430 DISCSCKLFERMGILCRHALKAF 452
             SCSC  F+  GI C+HAL   
Sbjct: 12  KASCSCPAFQLYGIPCKHALAVL 34

This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organised into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	573
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.88
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.71
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.07
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.93
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.34
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	96.97
PF13610	140	DDE_Tnp_IS240: DDE domain	93.62
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	91.42
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	88.91
PF04937	153	DUF659: Protein of unknown function (DUF 659); Int	80.16

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=7.5e-120  Score=1001.49  Aligned_cols=514  Identities=32%  Similarity=0.554  Sum_probs=465.1

Q ss_pred             CEEEE-ECCeEEEEEEecccCCCCCCcchhhhhccccccccccCCcccccCCcccceecccccCCCccccccccccCCcc
Q 008217            1 MRFTV-SNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYL   79 (573)
Q Consensus         1 ~~~~~-~~~~w~v~~~~~~HNH~l~~~~~~~~l~s~r~l~~~~~~i~~~~~~~~~~~~l~~~~g~~~~~~~~~~di~n~~   79 (573)
                      |+|++ ++|+|.|+.|+++|||||.++..+..  ..|+                .+..+....++..+++.++.|..|+.
T Consensus       165 m~Vk~~~~gkW~V~~fv~eHNH~L~p~~~~~~--~~r~----------------~~~~~~~~~~~~~~v~~~~~d~~~~~  226 (846)
T PLN03097        165 MHVKRRPDGKWVIHSFVKEHNHELLPAQAVSE--QTRK----------------MYAAMARQFAEYKNVVGLKNDSKSSF  226 (846)
T ss_pred             EEEEEcCCCeEEEEEEecCCCCCCCCccccch--hhhh----------------hHHHHHhhhhccccccccchhhcchh
Confidence            35666 78999999999999999997643210  0001                01122334556677878888889998


Q ss_pred             hhhhccCCCCCcHHHHHHHHHhhccCCCCceEEEEecCCCCeeEeEecccccHHHHhhcCCEEEecceeccccCCceeee
Q 008217           80 PREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAP  159 (573)
Q Consensus        80 ~~~r~~~~~~~d~~~l~~~l~~~~~~np~f~~~~~~d~~~~~~~ifw~~~~~~~~~~~f~dvi~iD~Ty~tn~y~~pl~~  159 (573)
                      .+.|++.+..||+++|++||+++|.+||+|||++++|++|+++||||+|++|+.+|.+|||||+|||||+||+|+|||++
T Consensus       227 ~~~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pfa~  306 (846)
T PLN03097        227 DKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLAL  306 (846)
T ss_pred             hHHHhhhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHhcCCEEEEeceeeccccCcEEEE
Confidence            88888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHHHHHHhcccCccccccchHHHHHHHh
Q 008217          160 FVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRN  239 (573)
Q Consensus       160 ~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~Ai~~vfP~~~h~~C~~Hi~kn~~~~  239 (573)
                      |+|||||+|+++|||||+.+|+.++|.|||++|+++|+|+.|.+||||+|.||.+||++|||+|.|++|.|||++|+.++
T Consensus       307 FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~  386 (846)
T PLN03097        307 FVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSEN  386 (846)
T ss_pred             EEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccC-cHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcccCchHHHHHHhhcccccccccccCccccccccCCCCcchh
Q 008217          240 LANQFA-NLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSID  318 (573)
Q Consensus       240 ~~~~~~-~~~~~~~~~~~v~~s~t~~eFe~~w~~l~~~~~~~~~~~l~~l~~~r~~W~~~y~~~~f~~g~~tt~r~Es~n  318 (573)
                      ++..+. .+.|..+|++||+++.+++|||..|..|+++|+|++|+||+.||+.|++||++|+++.|++||.||+|+||+|
T Consensus       387 L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k~~F~agm~sTqRSES~N  466 (846)
T PLN03097        387 LGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESIN  466 (846)
T ss_pred             hhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhcccccCCcccccccccHH
Confidence            998853 4689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCCCcHHhHHHHHHHHHhhhhhhhhhhcccccCcccccchhhhHHHHHHhhccHHHHHHHHHHHHhccccceE
Q 008217          319 TVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMK  398 (573)
Q Consensus       319 ~~lK~~~~~~~~l~~f~~~~~~~~~~~~~~e~~~d~~s~~~~p~~~~~~~~e~q~~~iyT~~~f~~fq~el~~~~~~~~~  398 (573)
                      ++||+|++++++|.+|+++|+++++.++++|+++|+.+.++.|.+++++|+|+||+++||++||++||+|+..++++.+.
T Consensus       467 s~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~  546 (846)
T PLN03097        467 AFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPK  546 (846)
T ss_pred             HHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             EEeeCCcEEEEEEEEecceeeEEEEEecCCCeEEeecccccccCcchhhHHHHhhhCCCccCCccccccccccccccCcc
Q 008217          399 EVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIV  478 (573)
Q Consensus       399 ~~~~~~~~y~v~~~~~~~~~~~~V~~~~~~~~~~CsC~~fe~~GipCrHil~Vl~~~~v~~iP~~yil~RWtk~ak~~~~  478 (573)
                      ....++..+++.+...+..+.|.|.+|.....++|+|++||+.||||+|||+||.++||.+||++||++||||+||...+
T Consensus       547 ~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP~~YILkRWTKdAK~~~~  626 (846)
T PLN03097        547 MESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHL  626 (846)
T ss_pred             eeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCchhhhhhhchhhhhhccc
Confidence            65444554444443333456899999999999999999999999999999999999999999999999999999998766


Q ss_pred             cccCCccccCCCCccccchHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHhhhH
Q 008217          479 VRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDE  540 (573)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~Ry~~l~~~~~~~~~~a~~s~e~~~~~~~~l~~~~~~~~~~e  540 (573)
                      ......        ..++.+.||+.||++++++|++||.|+|.|..|+++|+++...+....
T Consensus       627 ~~~~~~--------~~~~~~~Ryn~L~r~a~kla~~as~S~E~y~~a~~~L~e~~~~~~~~~  680 (846)
T PLN03097        627 LGEESE--------QVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCISMN  680 (846)
T ss_pred             Cccccc--------cccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            532211        123567899999999999999999999999999999999998875443

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.88  E-value=7.9e-23  Score=171.55  Aligned_cols=90  Identities=31%  Similarity=0.517  Sum_probs=86.9

Q ss_pred             ceeccccCCceeee---EEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHHHHHHhccc
Q 008217          146 ATFRLNKYNLICAP---FVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMK  222 (573)
Q Consensus       146 ~Ty~tn~y~~pl~~---~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~Ai~~vfP~  222 (573)
                      +||+||+| +|++.   ++|+|++|+.+|+|++++.+|+.++|.|+|+.+++.++.+ |.+||||++.|+.+||+++||+
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~~-p~~ii~D~~~~~~~Ai~~vfP~   78 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQK-PKVIISDFDKALINAIKEVFPD   78 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccccC-ceeeeccccHHHHHHHHHHCCC
Confidence            69999999 88886   9999999999999999999999999999999999999987 9999999999999999999999


Q ss_pred             CccccccchHHHHHH
Q 008217          223 TRHRLSTGHIVKDAR  237 (573)
Q Consensus       223 ~~h~~C~~Hi~kn~~  237 (573)
                      +.|++|.||++||++
T Consensus        79 ~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   79 ARHQLCLFHILRNIK   93 (93)
T ss_pred             ceEehhHHHHHHhhC
Confidence            999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.71  E-value=2.6e-18  Score=180.38  Aligned_cols=184  Identities=14%  Similarity=0.174  Sum_probs=149.9

Q ss_pred             CEEEecceeccccC-----CceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHH
Q 008217          140 DVVSFDATFRLNKY-----NLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK  214 (573)
Q Consensus       140 dvi~iD~Ty~tn~y-----~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~  214 (573)
                      ++|++|++|.+-+.     +.++++++|||.+|+..++|+.+...|+.++|.-+|..+++. |-..|..||+|..+|+..
T Consensus       163 ~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~R-Gl~~~~lvv~Dg~~gl~~  241 (381)
T PF00872_consen  163 PYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKER-GLKDILLVVSDGHKGLKE  241 (381)
T ss_pred             cceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhc-cccccceeeccccccccc
Confidence            47899999987653     456889999999999999999999999999999999998765 445799999999999999


Q ss_pred             HHHHhcccCccccccchHHHHHHHhhhhccCcHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcccCchHHHHHHhhcc-c
Q 008217          215 AIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLR-D  293 (573)
Q Consensus       215 Ai~~vfP~~~h~~C~~Hi~kn~~~~~~~~~~~~~~~~~~~~~v~~s~t~~eFe~~w~~l~~~~~~~~~~~l~~l~~~r-~  293 (573)
                      ||+++||++.++.|.+|+++|+.+++... ..+.+..+++. |+.+.+.++....++.+.+++....+...+.|-+.. +
T Consensus       242 ai~~~fp~a~~QrC~vH~~RNv~~~v~~k-~~~~v~~~Lk~-I~~a~~~e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~  319 (381)
T PF00872_consen  242 AIREVFPGAKWQRCVVHLMRNVLRKVPKK-DRKEVKADLKA-IYQAPDKEEAREALEEFAEKWEKKYPKAAKSLEENWDE  319 (381)
T ss_pred             cccccccchhhhhheechhhhhccccccc-cchhhhhhccc-cccccccchhhhhhhhcccccccccchhhhhhhhcccc
Confidence            99999999999999999999999998653 33578888877 677899999999999999988776665444432211 2


Q ss_pred             ccccccccCccccccccCCCCcchhhhhhcccC
Q 008217          294 KWCLVFNSDTFSANIDSVQRSDSIDTVFHQVST  326 (573)
Q Consensus       294 ~W~~~y~~~~f~~g~~tt~r~Es~n~~lK~~~~  326 (573)
                      .|...-++...+.-+.|||.+||+|+.+|+...
T Consensus       320 ~~tf~~fP~~~~~~i~TTN~iEsln~~irrr~~  352 (381)
T PF00872_consen  320 LLTFLDFPPEHRRSIRTTNAIESLNKEIRRRTK  352 (381)
T ss_pred             ccceeeecchhccccchhhhccccccchhhhcc
Confidence            233222455556677899999999999998654

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.07  E-value=6.2e-10  Score=115.09  Aligned_cols=198  Identities=13%  Similarity=0.110  Sum_probs=141.0

Q ss_pred             CEEEecceecccc--CCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHHHHH
Q 008217          140 DVVSFDATFRLNK--YNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIE  217 (573)
Q Consensus       140 dvi~iD~Ty~tn~--y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~Ai~  217 (573)
                      .++++|++|.+-+  -+..++.++||+.+|+..++|+.+-..|+ ..|.-+|..|+.. |-.....+++|...++.+||.
T Consensus       146 ~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~r-gl~~v~l~v~Dg~~gl~~aI~  223 (379)
T COG3328         146 PYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNR-GLSDVLLVVVDGLKGLPEAIS  223 (379)
T ss_pred             eEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhc-cccceeEEecchhhhhHHHHH
Confidence            5899999999988  45778899999999999999999999999 8888666666544 334566777799999999999


Q ss_pred             HhcccCccccccchHHHHHHHhhhhccCcHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcccCchHHHHHHhhcc-cccc
Q 008217          218 TVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLR-DKWC  296 (573)
Q Consensus       218 ~vfP~~~h~~C~~Hi~kn~~~~~~~~~~~~~~~~~~~~~v~~s~t~~eFe~~w~~l~~~~~~~~~~~l~~l~~~r-~~W~  296 (573)
                      .+||.+.++.|..|+.+|+..+.... ..+....+++. ++.+.+.++-...|..+.+.+....+.-++.+.+.. +.|.
T Consensus       224 ~v~p~a~~Q~C~vH~~Rnll~~v~~k-~~d~i~~~~~~-I~~a~~~e~~~~~~~~~~~~w~~~yP~i~~~~~~~~~~~~~  301 (379)
T COG3328         224 AVFPQAAVQRCIVHLVRNLLDKVPRK-DQDAVLSDLRS-IYIAPDAEEALLALLAFSELWGKRYPAILKSWRNALEELLP  301 (379)
T ss_pred             HhccHhhhhhhhhHHHhhhhhhhhhh-hhHHHHhhhhh-hhccCCcHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhcc
Confidence            99999999999999999999887663 22345555554 677889999999999888765544432222222111 1221


Q ss_pred             cccccCccccccccCCCCcchhhhhhcccCC--CCcHHhHHHHHHHH
Q 008217          297 LVFNSDTFSANIDSVQRSDSIDTVFHQVSTK--RMDVISFVQHFEEK  341 (573)
Q Consensus       297 ~~y~~~~f~~g~~tt~r~Es~n~~lK~~~~~--~~~l~~f~~~~~~~  341 (573)
                      ..=++.....-+.|||-+|++|..++.....  ..+-.+++..+...
T Consensus       302 F~~fp~~~r~~i~ttN~IE~~n~~ir~~~~~~~~fpn~~sv~k~~y~  348 (379)
T COG3328         302 FFAFPSEIRKIIYTTNAIESLNKLIRRRTKVVGIFPNEESVEKLVYL  348 (379)
T ss_pred             cccCcHHHHhHhhcchHHHHHHHHHHHHHhhhccCCCHHHHHHHHHH
Confidence            1111111113457999999999988865443  44555555544433

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.93  E-value=4.4e-10  Score=71.07  Aligned_cols=26  Identities=50%  Similarity=0.855  Sum_probs=24.8

Q ss_pred             EeecccccccCcchhhHHHHhhhCCC
Q 008217          432 SCSCKLFERMGILCRHALKAFDFNNL  457 (573)
Q Consensus       432 ~CsC~~fe~~GipCrHil~Vl~~~~v  457 (573)
                      +|+|++||..||||+|+|+|+...++
T Consensus         2 ~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        2 TCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             cccCCCcccCCccHHHHHHHHHHhCC
Confidence            79999999999999999999999886

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.34  E-value=3.8e-07  Score=63.29  Aligned_cols=29  Identities=31%  Similarity=0.564  Sum_probs=26.0

Q ss_pred             CCeEEeecccccccCcchhhHHHHhhhCC
Q 008217          428 TQDISCSCKLFERMGILCRHALKAFDFNN  456 (573)
Q Consensus       428 ~~~~~CsC~~fe~~GipCrHil~Vl~~~~  456 (573)
                      ....+|+|..|+..|.||+|+++|+...+
T Consensus        12 ~~~~~CsC~~~~~~~~~CkHi~av~~~~~   40 (40)
T PF04434_consen   12 IEQASCSCPYFQFRGGPCKHIVAVLLALN   40 (40)
T ss_pred             ccccEeeCCCccccCCcchhHHHHHHhhC
Confidence            56889999999999999999999987653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=96.97  E-value=0.00061  Score=67.69  Aligned_cols=96  Identities=17%  Similarity=0.094  Sum_probs=66.7

Q ss_pred             EEecceeccccCCceeeeEEEEcC--CCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHHHHHHh
Q 008217          142 VSFDATFRLNKYNLICAPFVGVNH--HWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETV  219 (573)
Q Consensus       142 i~iD~Ty~tn~y~~pl~~~~Gv~~--~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~Ai~~v  219 (573)
                      |+||=+........  +..+-+|.  +...+   ++++.+-+.+++.-+|..+...-....+++|++|-.++...||++.
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~i---l~i~~~r~~~~l~~~~~~~~~~~~~~~v~~V~~Dm~~~y~~~~~~~   75 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGRI---LDILPGRDKETLKDFFRSLYPEEERKNVKVVSMDMSPPYRSAIREY   75 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCceE---EEEcCCccHHHHHHHHHHhCccccccceEEEEcCCCcccccccccc
Confidence            34555544433331  23334444  44444   3578888888877666654211133578999999999999999999


Q ss_pred             cccCccccccchHHHHHHHhhhh
Q 008217          220 FMKTRHRLSTGHIVKDARRNLAN  242 (573)
Q Consensus       220 fP~~~h~~C~~Hi~kn~~~~~~~  242 (573)
                      ||+|.+..-.|||++++.+.+..
T Consensus        76 ~P~A~iv~DrFHvvk~~~~al~~   98 (249)
T PF01610_consen   76 FPNAQIVADRFHVVKLANRALDK   98 (249)
T ss_pred             ccccccccccchhhhhhhhcchh
Confidence            99999999999999999886554

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=93.62  E-value=0.025  Score=50.91  Aligned_cols=81  Identities=16%  Similarity=0.153  Sum_probs=66.3

Q ss_pred             CCEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHHHHHH
Q 008217          139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIET  218 (573)
Q Consensus       139 ~dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~Ai~~  218 (573)
                      |+.+.+|=||.+-+ |-..++...||.+|+  ++++-+-..-+..+=..||+..++..+ ..|..|+||+.++...|+++
T Consensus         1 ~~~w~~DEt~iki~-G~~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~-~~p~~ivtDk~~aY~~A~~~   76 (140)
T PF13610_consen    1 GDSWHVDETYIKIK-GKWHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHR-GEPRVIVTDKLPAYPAAIKE   76 (140)
T ss_pred             CCEEEEeeEEEEEC-CEEEEEEEeeccccc--chhhhhhhhcccccceeeccccceeec-cccceeecccCCccchhhhh
Confidence            67899999998744 224467889999999  777888888788777778777766654 68999999999999999999


Q ss_pred             hcccC
Q 008217          219 VFMKT  223 (573)
Q Consensus       219 vfP~~  223 (573)
                      .+|..
T Consensus        77 l~~~~   81 (140)
T PF13610_consen   77 LNPEG   81 (140)
T ss_pred             ccccc
Confidence            99974

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=91.42  E-value=1.1  Score=38.41  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=55.0

Q ss_pred             CCEEEecceecc-ccCCceeeeEEEEcCCCCeeeEeEeeeccCCcchHHHHHHHHHHHhCCCCCcEEeccccHHHHH
Q 008217          139 GDVVSFDATFRL-NKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK  214 (573)
Q Consensus       139 ~dvi~iD~Ty~t-n~y~~pl~~~~Gv~~~~~~~~~g~al~~~E~~es~~w~l~~~~~~~~~~~p~~iitD~~~al~~  214 (573)
                      +..+.+|.+... ...+.....++.+|..-+.+ +++.+-..++.+.+..+|.......++..|.+|+||+..+...
T Consensus         6 ~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~i~tD~g~~f~~   81 (120)
T PF00665_consen    6 GERWQIDFTPMPIPDKGGRVYLLVFIDDYSRFI-YAFPVSSKETAEAALRALKRAIEKRGGRPPRVIRTDNGSEFTS   81 (120)
T ss_dssp             TTEEEEEEEEETGGCTT-CEEEEEEEETTTTEE-EEEEESSSSHHHHHHHHHHHHHHHHS-SE-SEEEEESCHHHHS
T ss_pred             CCEEEEeeEEEecCCCCccEEEEEEEECCCCcE-EEEEeecccccccccccccccccccccccceeccccccccccc
Confidence            468889998555 44555788888888776654 4667776678888888888777777766699999999998753

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=88.91  E-value=7.4  Score=42.42  Aligned_cols=141  Identities=13%  Similarity=0.175  Sum_probs=81.5

Q ss_pred             cCCcchHHHHHHHHHHHhCCCC--CcEEeccccHHHHHHHHHhcccCccccccchHHHHHHHhhhhccCcHHHHHHHHHH
Q 008217          179 DESTHSYVWLFESFLESMGNTQ--PKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKC  256 (573)
Q Consensus       179 ~E~~es~~w~l~~~~~~~~~~~--p~~iitD~~~al~~Ai~~vfP~~~h~~C~~Hi~kn~~~~~~~~~~~~~~~~~~~~~  256 (573)
                      ....+-|.-+.+.+-..-....  -.++..|+.+.+.+++. .||++.|.|..||+.+.+.+.++..   .+....+.++
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~---~~~~~~~~~a  310 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHD---PELKEKIRKA  310 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhC---hHHHHHHHHH
Confidence            3444556555554443333222  34677999999988776 9999999999999999999988763   2455555566


Q ss_pred             hccCCCHHHHHHHHHHHHhhcccCc-hHHHHHHhh-cccccc--cccccCccccccccCCCCcchhhhhhcccCC
Q 008217          257 FYECHDETEFQVSWDDMINKFSLGD-HLWLKKLYS-LRDKWC--LVFNSDTFSANIDSVQRSDSIDTVFHQVSTK  327 (573)
Q Consensus       257 v~~s~t~~eFe~~w~~l~~~~~~~~-~~~l~~l~~-~r~~W~--~~y~~~~f~~g~~tt~r~Es~n~~lK~~~~~  327 (573)
                      ++ ..+..+++...+.+...-.... .+-+..+.. ....|-  .+|...   .|+......|+.+..+...+++
T Consensus       311 l~-~~d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n~~~i~~y~~~---~~~~g~g~ee~~~~~~s~RmK~  381 (470)
T PF06782_consen  311 LK-KGDKKKLETVLDTAESCAKDEEERKKIRKLRKYLLNNWDGIKPYRER---EGLRGIGAEESVSHVLSYRMKS  381 (470)
T ss_pred             HH-hcCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHCHHHhhhhhhc---cCCCccchhhhhhhHHHHHhcC
Confidence            65 4566677766666554332221 111222111 122332  223211   2333334478888887665554

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function

Probab=80.16  E-value=16  Score=33.36  Aligned_cols=108  Identities=11%  Similarity=0.078  Sum_probs=74.9

Q ss_pred             HHHhhcCCEEEecceeccccCCceeeeEEEEcCCCCeeeEeEeeecc--CCcchHHHHHHHHHHHhCCCCCcEEeccccH
Q 008217          133 LDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLD--ESTHSYVWLFESFLESMGNTQPKTIFTNENE  210 (573)
Q Consensus       133 ~~~~~f~dvi~iD~Ty~tn~y~~pl~~~~Gv~~~~~~~~~g~al~~~--E~~es~~w~l~~~~~~~~~~~p~~iitD~~~  210 (573)
                      ..+...|=-|..|+=  ++..+.+++.|+-....|-.++-.. -.++  .+.+.+.-+|+...+.+|......||||-..
T Consensus        27 ~~w~~~Gcsi~~DgW--td~~~~~lInf~v~~~~g~~Flksv-d~s~~~~~a~~l~~ll~~vIeeVG~~nVvqVVTDn~~  103 (153)
T PF04937_consen   27 KSWKRTGCSIMSDGW--TDRKGRSLINFMVYCPEGTVFLKSV-DASSIIKTAEYLFELLDEVIEEVGEENVVQVVTDNAS  103 (153)
T ss_pred             HHHHhcCEEEEEecC--cCCCCCeEEEEEEEcccccEEEEEE-ecccccccHHHHHHHHHHHHHHhhhhhhhHHhccCch
Confidence            344555656666664  5566677777776666555543332 2222  4556666667777777777777889999999


Q ss_pred             HHHHHHH---HhcccCccccccchHHHHHHHhhhhc
Q 008217          211 AMSKAIE---TVFMKTRHRLSTGHIVKDARRNLANQ  243 (573)
Q Consensus       211 al~~Ai~---~vfP~~~h~~C~~Hi~kn~~~~~~~~  243 (573)
                      .+++|-+   +-+|.....-|.-|-+.-+.+.+..+
T Consensus       104 ~~~~a~~~L~~k~p~ifw~~CaaH~inLmledi~k~  139 (153)
T PF04937_consen  104 NMKKAGKLLMEKYPHIFWTPCAAHCINLMLEDIGKL  139 (153)
T ss_pred             hHHHHHHHHHhcCCCEEEechHHHHHHHHHHHHhcC
Confidence            9988844   55788888899999998888887764

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	573
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 74/440 (16%), Positives = 150/440 (34%), Gaps = 96/440 (21%)

Query: 175 AFLLDESTHSYVWLFESF-LESMGNTQPKTIFTNENEAMSKAIETVFMK-TRHRLSTGHI 232
            F+ +    +Y +L      E    +    ++  + + +    + VF K    RL     
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQPYLK 139

Query: 233 VKDARRNL-ANQFANLEFMKYLNK-------C-FYECHDETEFQVSWDDMINKFSLGDHL 283
           ++ A   L   +   ++ +    K       C  Y+   + +F++ W ++ N  S    L
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 284 -WLKKLYSLRDK-WC-LVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEE 340
             L+KL    D  W     +S      I S+Q    +  +      +   ++        
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLV-------- 249

Query: 341 KTKEMHLDELED----DHF---CKHVV-PR-LQVWNGILN----HAVYVYTSKIFNFFE- 386
                 L  +++    + F   CK ++  R  QV + +      H    + S      E 
Sbjct: 250 ------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 387 MELLG-CMGVRMKEVCKDGEVC---------IYEAIEEG--------------QQKVCKI 422
             LL   +  R +++ +  EV          I E+I +G                 + + 
Sbjct: 304 KSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 423 NYN-LSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRV 481
           + N L   +     K+F+R+ +          F     IP   +   W  +  K  V+ V
Sbjct: 362 SLNVLEPAEYR---KMFDRLSV----------FPPSAHIPTILLSLIWF-DVIKSDVMVV 407

Query: 482 SNERHGLS------SNTVKSVQSLRLSELMHMGSNVYSI-ASLSDSGTKIVKEKLAEAME 534
            N+ H  S        +  S+ S+ L   + +  N Y++  S+ D    I K   ++ + 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKL-ENEYALHRSIVDH-YNIPKTFDSDDLI 465

Query: 535 LLEKDEEIVNRLA-HAKKVD 553
               D+   + +  H K ++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIE 485

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 6e-06
 Identities = 71/472 (15%), Positives = 132/472 (27%), Gaps = 150/472 (31%)

Query: 83  MGNMMEPGDV----QGLLNYFRRKKCE--DPSFFYAVQVNQLNQATNFFWRDGRSK---- 132
           + N   P  V    Q LL           D S    ++++ +        +    +    
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 133 -LDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFL-----------LDE 180
            L      +V   +A                    W      C  L           L  
Sbjct: 249 VLL-----NV--QNAK------------------AWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 181 STHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGH------IVK 234
           +T +++ L +    ++   + K++         K ++         + T +      I +
Sbjct: 284 ATTTHISL-DHHSMTLTPDEVKSLL-------LKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 235 DARRNLA--NQFANLEFMKYLN--KCFYECHDETEFQVSWDDM-INKFSLGDH------- 282
             R  LA  + + ++   K     +      +  E++  +D + +  F    H       
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLS 393

Query: 283 -LW-----------LKKL--YSLRDKWCLVFNSDTFSANIDSVQ----RSDSIDTVFHQV 324
            +W           + KL  YSL +K        T S  I S+          +   H+ 
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQ---PKESTIS--IPSIYLELKVKLENEYALHR- 447

Query: 325 STKRMDVISFVQHFEEKTKEMHLDEL----EDDHFCKHVVPRLQVWNGILNHAVYVYTSK 380
                   S V H+    K    D+L     D +F  H          I +H   +   +
Sbjct: 448 --------SIVDHY-NIPKTFDSDDLIPPYLDQYFYSH----------IGHHLKNIEHPE 488

Query: 381 IFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLST-QD-------IS 432
               F M  L    +  K +  D                      L+T Q        I 
Sbjct: 489 RMTLFRMVFLDFRFLEQK-IRHDSTAW------------NASGSILNTLQQLKFYKPYIC 535

Query: 433 CSCKLFERM--GIL-----CRHALKAFDFNNLTQIPVQYILKRWTKEAKKGI 477
            +   +ER+   IL         L    + +L +I +    +   +EA K +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 59/239 (24%)

Query: 317 IDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYV 376
           +D    +   +  D++     FE+   +        +  CK V    +    IL+     
Sbjct: 7   MDFETGEHQYQYKDIL---SVFEDAFVD--------NFDCKDVQDMPK---SILSKEEI- 51

Query: 377 YTSKIFNFFEME-----LLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDI 431
               I    +       L   +           E  + + +EE  +     NY      I
Sbjct: 52  --DHIIMSKDAVSGTLRLFWTL-------LSKQEEMVQKFVEEVLRI----NYKFLMSPI 98

Query: 432 SCSCK---LFERMGILCRHAL----KAFDFNNLTQIPVQYILKRWTKEAK--KGIVVRVS 482
               +   +  RM I  R  L    + F   N++++     L++   E +  K +++   
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI--- 155

Query: 483 NERHGL-----SSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELL 536
               G+     +   +    S ++     M   ++ +    +       E + E ++ L
Sbjct: 156 ---DGVLGSGKTWVALDVCLSYKV--QCKMDFKIFWL----NLKNCNSPETVLEMLQKL 205

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 11/37 (29%)

Query: 537 EKDEEIVNRLAHAKKV---DSSPSLNAISDIWTMASL 570
           EK    + +L  + K+   DS+P+L AI      A++
Sbjct: 18  EKQA--LKKLQASLKLYADDSAPAL-AIK-----ATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00