Citrus Sinensis ID: 008243
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 573 | 2.2.26 [Sep-21-2011] | |||||||
| Q8W486 | 519 | Uncharacterized protein A | no | no | 0.727 | 0.803 | 0.375 | 2e-71 |
| >sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 | Back alignment and function desciption |
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Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 162/432 (37%), Positives = 242/432 (56%), Gaps = 15/432 (3%)
Query: 83 DIWSSRNAQFYHGCSIASSKFAKAGDVTHSNRYLAIVTSGGLNQQRTGIIDAVVAARILN 142
++W S + + S S + +N YL + +GGLNQQR+ I +AV+AARI+N
Sbjct: 61 ELWESAKSGGWRPSSAPRSDWPPP--TKETNGYLRVRCNGGLNQQRSAICNAVLAARIMN 118
Query: 143 ATLVIPKLDQKSFWKDASDFSEIFDVDRFISVLSKDVKIIKQIP--RKGGKS--LTPYHM 198
ATLV+P+LD SFW D S F I+DV+ FI L DVKI+ +IP K GK+ + + +
Sbjct: 119 ATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQI 178
Query: 199 RVPRKCNEKCYQNRVLPVLLKRHAVQLSKFDYRLANKLDT-DLQKLRCRVNYHALSFTDS 257
R PR + Y L + + A+ L+ F +RLA ++D + Q+LRCRVNYHAL F
Sbjct: 179 RPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPH 238
Query: 258 IQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHI 317
I K+ E +V ++R +G H++++HLRFE DMLAF+GC+ +E+K L RK
Sbjct: 239 IMKLSESIVDKLRSQG-HFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADKR 297
Query: 318 SNPDKERRHGKCPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYS 377
++ R GKCPLTP EVGL+LRA+ + + IY+A+GE++GGE+ + P + LFP +
Sbjct: 298 LIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDN 357
Query: 378 KETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNG--NMAKILAGRRKYFGHKPTI 435
++ E +S +A+D++VC SDIF+ +G N A L G R Y+G + TI
Sbjct: 358 HSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTI 417
Query: 436 RPNAKKLYRLFLNQTSTTWDTFASKVRS--YQRGFMGEPNEVRPGRGEFHENP-ATCICE 492
RP+ K L +F+ + F VR + F G V P F+ N C C+
Sbjct: 418 RPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSP--ESFYTNSWPECFCQ 475
Query: 493 DSEARTKKDSVP 504
+ ++ P
Sbjct: 476 MNPKKSSDKCPP 487
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,431,889
Number of Sequences: 539616
Number of extensions: 10105005
Number of successful extensions: 39036
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 37624
Number of HSP's gapped (non-prelim): 798
length of query: 573
length of database: 191,569,459
effective HSP length: 123
effective length of query: 450
effective length of database: 125,196,691
effective search space: 56338510950
effective search space used: 56338510950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 573 | ||||||
| 224061893 | 562 | predicted protein [Populus trichocarpa] | 0.977 | 0.996 | 0.747 | 0.0 | |
| 449455589 | 574 | PREDICTED: DUF246 domain-containing prot | 0.993 | 0.991 | 0.738 | 0.0 | |
| 297842381 | 572 | hypothetical protein ARALYDRAFT_476779 [ | 0.989 | 0.991 | 0.717 | 0.0 | |
| 224086024 | 574 | predicted protein [Populus trichocarpa] | 0.991 | 0.989 | 0.753 | 0.0 | |
| 18411065 | 572 | O-fucosyltransferase-like protein [Arabi | 0.989 | 0.991 | 0.712 | 0.0 | |
| 6554491 | 572 | putative auxin-independent growth promot | 0.989 | 0.991 | 0.709 | 0.0 | |
| 255539186 | 570 | conserved hypothetical protein [Ricinus | 0.987 | 0.992 | 0.722 | 0.0 | |
| 359492327 | 573 | PREDICTED: DUF246 domain-containing prot | 0.994 | 0.994 | 0.730 | 0.0 | |
| 297850472 | 568 | F2D10.3 [Arabidopsis lyrata subsp. lyrat | 0.980 | 0.989 | 0.701 | 0.0 | |
| 334182711 | 564 | O-fucosyltransferase-like protein [Arabi | 0.966 | 0.982 | 0.689 | 0.0 |
| >gi|224061893|ref|XP_002300651.1| predicted protein [Populus trichocarpa] gi|222842377|gb|EEE79924.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/575 (74%), Positives = 486/575 (84%), Gaps = 15/575 (2%)
Query: 1 MAFQRRRQHHNHQHRLRVVVPIISSVFSALLILFALLSFLAPSPSDTDHLHHPRRFTSTD 60
MAF RRR H+ +R R ++P+I S+ ALLILFALLSFLAP+P D+++ H + +
Sbjct: 1 MAFHRRRNHY--YNRFRSILPLIFSISGALLILFALLSFLAPTPIDSNNPQHTNSLYARN 58
Query: 61 NV-DGPTGVPVFRVQRDGGKLDRDIWSSRNAQFYHGCSIASSKFAKAGDVTHSNRYLAIV 119
V + G V V + G + DRDIWSS+N+ +Y+GCS AS KFA A VT NRYL IV
Sbjct: 59 GVVEDTIGQSVLHVPKKG-RTDRDIWSSKNSLYYYGCSNASIKFANADAVTQPNRYLLIV 117
Query: 120 TSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDASDFSEIFDVDRFISVLSKDV 179
TSGGLNQQRTGIIDAVVAARILNATLV+P+LDQKSFWKD SDFSEIFDVD +IS LSKDV
Sbjct: 118 TSGGLNQQRTGIIDAVVAARILNATLVVPRLDQKSFWKDLSDFSEIFDVDWYISSLSKDV 177
Query: 180 KIIKQIPRKGGKSLTPYHMRVPRKCNEKCYQNRVLPVLLKRHAVQLSKFDYRLANKLDTD 239
KIIK +P++GGK+ P +MRVPRKC+E+CYQNR+LPVLLKRHA+QL+KFDYR+AN+LDT
Sbjct: 178 KIIKSLPKRGGKTWIPRNMRVPRKCSERCYQNRILPVLLKRHAIQLTKFDYRVANRLDTQ 237
Query: 240 LQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGD 299
LQKLRCRVNYHAL FTD I +MGEKLVH+MRMK KH+IALHLRFEPDMLAFSGCYYGGGD
Sbjct: 238 LQKLRCRVNYHALKFTDPILRMGEKLVHRMRMKSKHFIALHLRFEPDMLAFSGCYYGGGD 297
Query: 300 KERKELGAIRKRWKTLHISNPDKERRHGKCPLTPLEVGLMLRALGYGSDVHIYVASGEVY 359
KERKELGAIRKRWKTLH+SNPDKERRHGKCPLTP EVGLMLRALGY SD+HIYVASGEVY
Sbjct: 298 KERKELGAIRKRWKTLHVSNPDKERRHGKCPLTPREVGLMLRALGYSSDIHIYVASGEVY 357
Query: 360 GGEETLAPLKALFPNFYSKETIASK-ELEPFSSFSSRMAALDFIVCDESDIFVTNNNGNM 418
GGEETLAPLKALFPNFY+KET+ASK ELEPFSSFSSRMAALDFIVCDESD+FVTNNNGNM
Sbjct: 358 GGEETLAPLKALFPNFYTKETLASKEELEPFSSFSSRMAALDFIVCDESDVFVTNNNGNM 417
Query: 419 AKILAGRRKYFGHKPTIRPNAKKLYRLFLNQTSTTWDTFASKVRSYQRGFMGEPNEVRPG 478
A+ILAGRR+YFGHKPTIRPNAKKLYRLFLNQT+ +W+ F SK+R+YQRGFMGEP EVRPG
Sbjct: 418 ARILAGRRRYFGHKPTIRPNAKKLYRLFLNQTTMSWEAFTSKMRTYQRGFMGEPKEVRPG 477
Query: 479 RGEFHENPATCICEDSEARTKKDSVPRKYGKGDSLTRKEVMVSDDQNDEDDPEWSDPDDD 538
RGEFHENP TCICEDSEA+ KKDS P KYGKG DD +D+PE DPDDD
Sbjct: 478 RGEFHENPHTCICEDSEAKAKKDSGPGKYGKG----------YDDVLGDDEPELPDPDDD 527
Query: 539 EDQRGLQDKELNNGTVLDYDSIISEEPELEEMLSD 573
Q G Q+KE NGT +DYD I +EEPELEE+LSD
Sbjct: 528 GYQDGPQEKEQFNGTGMDYDGITNEEPELEEILSD 562
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455589|ref|XP_004145535.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297842381|ref|XP_002889072.1| hypothetical protein ARALYDRAFT_476779 [Arabidopsis lyrata subsp. lyrata] gi|297334913|gb|EFH65331.1| hypothetical protein ARALYDRAFT_476779 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|224086024|ref|XP_002307782.1| predicted protein [Populus trichocarpa] gi|222857231|gb|EEE94778.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|18411065|ref|NP_565129.1| O-fucosyltransferase-like protein [Arabidopsis thaliana] gi|15292905|gb|AAK92823.1| putative auxin-independent growth promoter protein [Arabidopsis thaliana] gi|24030493|gb|AAN41394.1| putative auxin-independent growth promoter protein [Arabidopsis thaliana] gi|332197696|gb|AEE35817.1| O-fucosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|6554491|gb|AAF16673.1|AC012394_22 putative auxin-independent growth promoter; 88924-91907 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|255539186|ref|XP_002510658.1| conserved hypothetical protein [Ricinus communis] gi|223551359|gb|EEF52845.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359492327|ref|XP_002284838.2| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] gi|302141666|emb|CBI18869.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297850472|ref|XP_002893117.1| F2D10.3 [Arabidopsis lyrata subsp. lyrata] gi|297338959|gb|EFH69376.1| F2D10.3 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|334182711|ref|NP_173479.3| O-fucosyltransferase-like protein [Arabidopsis thaliana] gi|332191864|gb|AEE29985.1| O-fucosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 573 | ||||||
| TAIR|locus:2014619 | 572 | AT1G76270 [Arabidopsis thalian | 0.912 | 0.914 | 0.715 | 1.6e-203 | |
| TAIR|locus:2121793 | 551 | RHS17 "root hair specific 17" | 0.806 | 0.838 | 0.656 | 1.5e-168 | |
| TAIR|locus:2130938 | 549 | AT4G16650 [Arabidopsis thalian | 0.715 | 0.746 | 0.633 | 1.1e-142 | |
| TAIR|locus:2143181 | 508 | AT5G15740 [Arabidopsis thalian | 0.659 | 0.744 | 0.431 | 2.6e-79 | |
| TAIR|locus:2009467 | 565 | AT1G22460 [Arabidopsis thalian | 0.643 | 0.653 | 0.458 | 6.8e-79 | |
| TAIR|locus:2174754 | 522 | AT5G64600 [Arabidopsis thalian | 0.689 | 0.756 | 0.407 | 8.7e-79 | |
| TAIR|locus:2056981 | 508 | AT2G03280 [Arabidopsis thalian | 0.574 | 0.647 | 0.426 | 2.2e-76 | |
| TAIR|locus:2076552 | 512 | AT3G02250 [Arabidopsis thalian | 0.664 | 0.744 | 0.418 | 2.7e-75 | |
| TAIR|locus:2014869 | 499 | AT1G14020 [Arabidopsis thalian | 0.661 | 0.759 | 0.419 | 7.3e-75 | |
| TAIR|locus:2080285 | 638 | AT3G54100 [Arabidopsis thalian | 0.731 | 0.656 | 0.396 | 7.3e-75 |
| TAIR|locus:2014619 AT1G76270 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1969 (698.2 bits), Expect = 1.6e-203, P = 1.6e-203
Identities = 382/534 (71%), Positives = 439/534 (82%)
Query: 46 DTDHLHHPR-RFTSTDNVDGPTGVPVFRVQRDGGKLDRDIWSSRNAQFYHGCSIASSKFA 104
D+D L PR R++S D + TG F + R GG+ DRDIW SRNA+F+ GCS ASSKFA
Sbjct: 44 DSDRLP-PRVRYSSNDAIKA-TG---FHIPRAGGRSDRDIWRSRNAEFFFGCSNASSKFA 98
Query: 105 KAGDVTHSNRYLAIVTSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDASDFSE 164
+ VT ++RYL I TSGGLNQQRTGI+DAVVAARILNATLV+PKLDQKS+WKDASDFS
Sbjct: 99 NSKAVTRNDRYLVIATSGGLNQQRTGIVDAVVAARILNATLVVPKLDQKSYWKDASDFSH 158
Query: 165 IFDVDRFISVLSKDVKIIKQIPRKGGKSLTPYHMRVPRKCNEKCYQNRVLPVLLKRHAVQ 224
IFDVD FIS LS DV+IIKQ+P KGG++ + MRVPRKCNE+CY NRVLPVLLKRHAVQ
Sbjct: 159 IFDVDWFISFLSGDVRIIKQLPLKGGRTWSTSRMRVPRKCNERCYINRVLPVLLKRHAVQ 218
Query: 225 LSKFDYRLANKLDTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFE 284
L+KFDYRL+NKL DLQKLRCRVNYHAL FTD I MG +LV +MR++ KH+IALHLR+E
Sbjct: 219 LNKFDYRLSNKLSDDLQKLRCRVNYHALKFTDPILTMGNELVRRMRLRSKHFIALHLRYE 278
Query: 285 PDMLAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGKCPLTPLEVGLMLRALG 344
PDMLAFSGCYYGGGDKER+EL AIR+RWKTLHI+NP+K+RR G+CPLTP EVGLMLRALG
Sbjct: 279 PDMLAFSGCYYGGGDKERRELAAIRRRWKTLHINNPEKQRRQGRCPLTPEEVGLMLRALG 338
Query: 345 YGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIASKE-LEPFSSFSSRMAALDFIV 403
YGSDVHIYVASGEVYGGEE+LAPLKALFP+FYSK+TIA+KE LEPFSS+SSRMAALDF+V
Sbjct: 339 YGSDVHIYVASGEVYGGEESLAPLKALFPHFYSKDTIATKEELEPFSSYSSRMAALDFLV 398
Query: 404 CDESDIFVTNNNGNMAKILAGRRKYFGHKPTIRPNAKKLYRLFLNQTSTTWDTFASKVRS 463
CDESD+FVTNNNGNMAKILAGRR+Y GHKPT+RPNAKKLYRLF+N+ +TTW+ F+SKVRS
Sbjct: 399 CDESDVFVTNNNGNMAKILAGRRRYLGHKPTVRPNAKKLYRLFMNKENTTWEEFSSKVRS 458
Query: 464 YQRGFMGEPNEVRPGRGEFHENPATCICEDSEARTKKDSVPRKYGKGDSLTRKEVMVS-- 521
+QRGFMGEP EVR GRGEFHENP+TCICED+EA+ K RK GK + T K+ V+
Sbjct: 459 FQRGFMGEPKEVRAGRGEFHENPSTCICEDTEAKAKAQLESRKLGKKNKSTNKDAAVTVT 518
Query: 522 -DDQNXXXXXXXXXXXXXXXQRGLQDKELNNGTVLDYDS-IISEEPELEEMLSD 573
DDQ Q LQD+ L NGT LDYD S+EPELE MLSD
Sbjct: 519 NDDQTEEDDPDWSEPDYEEEQSDLQDRGLYNGTSLDYDDPSTSDEPELEAMLSD 572
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| TAIR|locus:2121793 RHS17 "root hair specific 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2056981 AT2G03280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2076552 AT3G02250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2080285 AT3G54100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 573 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-148 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 1e-116 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 2e-10 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 0.004 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 427 bits (1100), Expect = e-148
Identities = 158/323 (48%), Positives = 209/323 (64%), Gaps = 36/323 (11%)
Query: 115 YLAIVTSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDASDFSEIFDVDRFISV 174
YL + +GGLNQQR+ I DAV AR+LNATLV+P+LD+ S W D+S F +I+DVD FI
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60
Query: 175 LSKDVKIIKQIP-RKGGKSLTPYHMRVPRKCNEKCYQNRVLPVLLKRHAVQLSKFDYRLA 233
L DV+++K++P K RVP + + Y VLP+L K ++L+ FD RLA
Sbjct: 61 LKDDVRVVKKLPEELASKKPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLA 120
Query: 234 NK-LDTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSG 292
N L ++Q+LRCRVN+HAL F I+++G+KLV ++R G ++ALHLRFE DMLAFSG
Sbjct: 121 NDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRFEKDMLAFSG 180
Query: 293 CYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGKCPLTPLEVGLMLRALGYGSDVHIY 352
C GKCPLTP EVGL+LRALG+ IY
Sbjct: 181 C---------------------------------GKCPLTPEEVGLLLRALGFPRSTRIY 207
Query: 353 VASGEVYGGEETLAPLKALFPNFYSKETIAS-KELEPFSSFSSRMAALDFIVCDESDIFV 411
+A+GE+YGGE L PL+++FPN Y+KET+A+ +EL PFS SSR+AALD+IVC ESD+FV
Sbjct: 208 LAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVFV 267
Query: 412 TNNNGNMAKILAGRRKYFGHKPT 434
GN AK +AG R+Y GH+ T
Sbjct: 268 PTYGGNFAKAVAGHRRYLGHRKT 290
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
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| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 573 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 97.27 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 91.73 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-56 Score=448.28 Aligned_cols=296 Identities=36% Similarity=0.639 Sum_probs=207.6
Q ss_pred ecCCchhhHHHHHHHHHHHHHhCCeEEeeccCCCcccCCCCC-----CCccccHHHHHHhccCceEEcccCCcccCCCC-
Q 008243 120 TSGGLNQQRTGIIDAVVAARILNATLVIPKLDQKSFWKDASD-----FSEIFDVDRFISVLSKDVKIIKQIPRKGGKSL- 193 (573)
Q Consensus 120 ~nGGLNQqR~~IcDaVaVARiLNATLViP~Ld~~s~W~D~S~-----F~DIFDvdhFI~sL~~dVrIVk~LP~~~~~~~- 193 (573)
|.||+||||.++++||++|++||+|||||.+.....|++.+. |+++||+++|+++++.+|.+.+.+|..+....
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 889999999999999999999999999999999999999988 99999999999999999999999986543210
Q ss_pred -----------------------------CCccccCCC-CCChHHHHHhhhHhHhhc------ceEEEecccccccCC-C
Q 008243 194 -----------------------------TPYHMRVPR-KCNEKCYQNRVLPVLLKR------HAVQLSKFDYRLANK-L 236 (573)
Q Consensus 194 -----------------------------~~~~~r~p~-~~s~~yY~~~vLP~l~k~------~VI~l~~fd~rLa~~-l 236 (573)
......... +..+.+|+++++|++.++ +|+.|..+..++.++ .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 011122222 667889899999999987 999999999999874 7
Q ss_pred chHHHhhhhhccccccccchHHHHHHHHHHHHHHhcCCceEEEEeecccchhhhccCCCCCChHHHHHHHHHHHHhhhhc
Q 008243 237 DTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLH 316 (573)
Q Consensus 237 p~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~RLR~~~gpfIALHLRfE~DMLAfsgC~~gg~~~E~~EL~~~R~~wk~~~ 316 (573)
+.++|| +|+|+++|+++|++++++|+..+++|||+|||+|+|| +++|.+++ ++..|..+|.. .++
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~--~~~ 230 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW--GKK 230 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH---GG
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh--ccc
Confidence 888987 9999999999999999999955689999999999999 99999954 77778888865 223
Q ss_pred CCCchhhhcCCCCCCCHHHHHHHHHHhCCCCcceEEEEeccccCCcccccchHhhcCCcccccccccc-ccCCCCCcccc
Q 008243 317 ISNPDKERRHGKCPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKETIASK-ELEPFSSFSSR 395 (573)
Q Consensus 317 ~~~~~~~R~~G~CPLTPeEvgl~LrALGf~~~T~IYlAaGeiyGG~~~l~pL~~~FPnl~tKetLas~-EL~pF~~~ss~ 395 (573)
.+++...|..|.||++|++++.+++++|+.+.|.||||++++|||.+.|.+|++.||++++|+++.+. |+++|.. .+
T Consensus 231 ~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~ 308 (351)
T PF10250_consen 231 SINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQ 308 (351)
T ss_dssp GTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------S-
T ss_pred cccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cc
Confidence 35777889999999999999999999999999999999999999999999999999999999999999 9999976 89
Q ss_pred cchhheeeecCCceeeeCCCCchhhhhhhhccccCCC
Q 008243 396 MAALDFIVCDESDIFVTNNNGNMAKILAGRRKYFGHK 432 (573)
Q Consensus 396 ~AALDY~Vc~~SDVFVpt~~GNma~~V~GhR~y~G~~ 432 (573)
+|+||++||++||+||+|..++|+.+|+++|.|.|+.
T Consensus 309 ~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 309 LAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP 345 (351)
T ss_dssp -HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred hhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence 9999999999999999999889999999999999954
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 90/659 (13%), Positives = 178/659 (27%), Gaps = 206/659 (31%)
Query: 8 QHHNH--------QHRLRVVVPIISSVFSALLILFALLSFLAP--SPSDTDH-LHHPRRF 56
HH+H Q++ + ++ + F + S + DH +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 57 TSTDNV------DGPTGVPVF----------------RVQRDGGKLDRDIWSSRNAQFYH 94
+ T + V F + ++ + ++ + + Y+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 95 GCSIASSKFAKAGDVTHSNRYLAIVTSGGLNQQR--TGII--------DAVVAARILNAT 144
+ FAK +V+ YL + L + R ++ VA + +
Sbjct: 122 D----NQVFAK-YNVSRLQPYLKLRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 145 LVIPKLDQKSFWKDASDFSEIFDVDRFISVLSKDVKIIKQIPRKGGKSLTPYHMRVPRKC 204
V K+D K FW + + +VL K++ QI S + + + +
Sbjct: 175 KVQCKMDFKIFW---LNLKNCNSPE---TVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRI 227
Query: 205 NE-----------KCYQNRVLPVLLKRHAVQLSKFDYRLANKLDTDLQKLRCRVNYHAL- 252
+ K Y+N L VL + VQ + + N + L C++ L
Sbjct: 228 HSIQAELRRLLKSKPYEN-CLLVL--LN-VQ----NAKAWNAFN-----LSCKI----LL 270
Query: 253 -----SFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGA 307
TD + H+ + + + E K L
Sbjct: 271 TTRFKQVTDFLSAATTT---------------HISLDHHSMTLT-------PDEVKSLLL 308
Query: 308 IRKRWKTLHISNPDKERRHGKCPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAP 367
K L P R P + ++ + +A+ + +
Sbjct: 309 -----KYLDCR-PQDLPRE-VLTTNPRRLSII------AESIRDGLATWDNW-------- 347
Query: 368 LKALFPNFYSKETIAS---KELEP------FSSFS----------SRMAAL--DFIVCDE 406
N TI LEP F S ++ + D I D
Sbjct: 348 ---KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 407 SDIFVTNNNGNMAKILAGRRKYFGH------KPTIRPNAKKLYRLFLNQ-----TSTTWD 455
+ + ++ + K + N L+R ++ T + D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-NEYALHRSIVDHYNIPKTFDSDD 463
Query: 456 TFASKVRSYQRGFMGEPNEVRPGRGEFHENPATCICEDSEARTKKDSVPRKYGKGDSLTR 515
+ Y +G H E E + + L +
Sbjct: 464 LIPPYLDQYFYSHIG-----------HHLKNI----EHPE---RMTLFRMVFLDFRFLEQ 505
Query: 516 KEVMVSDDQNDEDDPEWSDPDDDEDQRGLQDKELNNGTVLDYDSIISE-EPELEEMLSD 573
K D W+ + LQ + Y I + +P+ E +++
Sbjct: 506 KIR--------HDSTAWNASGSILNT--LQQLKF-------YKPYICDNDPKYERLVNA 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Length = 362 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 573 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.44 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 99.01 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 96.95 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 96.35 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-13 Score=138.11 Aligned_cols=300 Identities=19% Similarity=0.250 Sum_probs=166.4
Q ss_pred CCCcEEEEEec-C-CchhhHHHHHHHHHHHHHhCCe----EEeeccCCCcccCCCC------CCCccccHHHH-------
Q 008243 111 HSNRYLAIVTS-G-GLNQQRTGIIDAVVAARILNAT----LVIPKLDQKSFWKDAS------DFSEIFDVDRF------- 171 (573)
Q Consensus 111 ~snGYL~V~~n-G-GLNQqR~~IcDaVaVARiLNAT----LViP~Ld~~s~W~D~S------~F~DIFDvdhF------- 171 (573)
..++||+-..+ | |.|.||..+-.|.++|+.||.| ||||-...-.-|+-.+ .|++.||++.+
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~~~vpVI 99 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVI 99 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHHTTSCEE
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHHhhCCee
Confidence 45899998864 5 8999999999999999999999 9999765433454432 69999999864
Q ss_pred -----HHhccCce-EEcccC---CcccC-CCCCC-ccc-----------------cCCCCCCh------------HHHHH
Q 008243 172 -----ISVLSKDV-KIIKQI---PRKGG-KSLTP-YHM-----------------RVPRKCNE------------KCYQN 211 (573)
Q Consensus 172 -----I~sL~~dV-rIVk~L---P~~~~-~~~~~-~~~-----------------r~p~~~s~------------~yY~~ 211 (573)
++.+.+.+ ..|-.+ +.... ..... ... .-|.|... .....
T Consensus 100 ~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~~~~~ 179 (408)
T 4ap5_A 100 EYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSAS 179 (408)
T ss_dssp EHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEECSBGG
T ss_pred EHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEeecch
Confidence 33332221 111000 00000 00000 000 00101000 00011
Q ss_pred hhhHhHhhc---ceEEEecccccccCCC-chHHHhhhhhccccccccchHHHHHHHHHHHHHHhcCCceEEEEeecccch
Q 008243 212 RVLPVLLKR---HAVQLSKFDYRLANKL-DTDLQKLRCRVNYHALSFTDSIQKMGEKLVHQMRMKGKHYIALHLRFEPDM 287 (573)
Q Consensus 212 ~vLP~l~k~---~VI~l~~fd~rLa~~l-p~eiQrLRCrvnf~ALrF~p~I~~lg~~LV~RLR~~~gpfIALHLRfE~DM 287 (573)
.+-|.+.+. .-+-+..+...|.+.. ..+...+| ..|+|++.|.++|+..++..-. ++|+++|+|...|+
T Consensus 180 ~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~--~~~~~~h~r~~~dw 252 (408)
T 4ap5_A 180 IVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLN--STDDADRIPFQEDW 252 (408)
T ss_dssp GGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHC--CCTTTTTCCCCSSG
T ss_pred hhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhC--cccceeecccchhH
Confidence 123444332 2233333444444422 23444443 4799999999999999876543 46777777777666
Q ss_pred hhhccCCCCCChHHHHHHHHHHHHhhhhcCCCchhhhcCCC-CCCCHHHHHHHHHHhCCCCcceEEEEeccccCCccccc
Q 008243 288 LAFSGCYYGGGDKERKELGAIRKRWKTLHISNPDKERRHGK-CPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLA 366 (573)
Q Consensus 288 LAfsgC~~gg~~~E~~EL~~~R~~wk~~~~~~~~~~R~~G~-CPLTPeEvgl~LrALGf~~~T~IYlAaGeiyGG~~~l~ 366 (573)
... |.......-. .+...|+-..+-...... +|-.++-+..+.+.+.=-+-+.||||+-+ .+..+.
T Consensus 253 ~~~--~~~~~~~~~~--------~y~~~H~Rr~d~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~---~~~~~~ 319 (408)
T 4ap5_A 253 MKM--KVKLGSALGG--------PYLGVHLRRKDFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA---VRKEYE 319 (408)
T ss_dssp GGC--CCCTTCBCCE--------EEEEEEECCTTTTTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC---CHHHHH
T ss_pred hhh--hcccccccCC--------CccccccccccchhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC---chhHHH
Confidence 553 3321100000 000001100000111112 23333222223222222244579999875 445578
Q ss_pred chHhhcCCccccccccccccCCCCCcccccchhheeeecCCceeeeCCCCchhhhhhhhccccCCCc
Q 008243 367 PLKALFPNFYSKETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNGNMAKILAGRRKYFGHKP 433 (573)
Q Consensus 367 pL~~~FPnl~tKetLas~EL~pF~~~ss~~AALDY~Vc~~SDVFVpt~~GNma~~V~GhR~y~G~~k 433 (573)
-|++.+|.++.-..-.. ++.++ .....|.||-+||..|++||+|....|...|.=.|-+.|+..
T Consensus 320 ~l~~~~~~~~~~~~~~~-~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 320 ELKKLLPEMVRFEPTWE-ELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp HHHHHCTTEECCCCCHH-HHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred HHHHhCCCcEEecCcch-hhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 89999998764322111 33333 234578999999999999999999999999999999999764
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00