Citrus Sinensis ID: 008244

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570---
Protein Sequence
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPFLLID
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEcccccccccccccHHHHcccccccccHHHHHHHHHcccEEHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHEEEEEcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccccccHHHHHcccccccccHHHHHHHHHcccEEEEEccccHHHcccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHHcccccccccccccccccccccEEEccHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEccEEEEEccHHHHHHHHHccccEccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHHcccEEEHccccccEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHcHHHccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEc
Coil and Loop (DISEMBL)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEklqllpppqplppkaphpltglsfavsdlfdiegyvtgfghpewarthsaasrTSTVVSTLVEGGATCIGKTVVDEFAYsingtnkhydtptnpaapsqmpggsssgAAVAVAADLVDfslgidtvggvrvpsafcgilgfrpsygavshmgiipistsldtvgwfardpkilRHVGHVLLqlpfaaqrsprqiiIADDCFellkipadRVVQVVIKSTEKlfgrqvlkhenlgeyfdskvpslkgfhktnGELKNVMRLIQRYEFknnhnewiesvkpaldpdisAEIGEMLEISETVIENCKSIRNEMRSAISSLlkddgilvtpttaypppklggkemlsEDYQNRAFSLLSIASVSgccqvtvplgyydkcptsvSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLngnnatyySNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMhwswsppikehpfllid
Flexible Loop (DISEMBL)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLpfaaqrspRQIIIADDCFELLKIPADRVVQVVIKSTeklfgrqvlkhenlgeyfdskvpslkgfhktngELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSllkddgilvtPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEkgnqaykdKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHmhwswsppikehpfllid
Low Complexity Region (SEG)
MASQSANlwvllglglagillMTKKLKKNIKQDFGAFIEklqllpppqplppkaphplTGLSFAVSDLFDIEGYVTGFGHPEWarthsaasrtstvvstLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPggsssgaavavaaDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPFLLID
Disordered region (IsUnstruct)
******NLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLL*************LTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTN***********************AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY************EDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL*********************************YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPFLL**
Disordered Region (DISOPRED)
******N**VLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQL**************LTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE*******************************YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPFLLID
Disordered Region (DISEMBL)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWA*************STLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT****************AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPFLLID
Disordered Region (DISPRO)
****SANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSS**A****ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKL***********E****KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPFLLID
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPFLLID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	573	2.2.26 [Sep-21-2011]
Q9LVH5	589	Outer envelope protein 64	yes	no	0.924	0.899	0.714	0.0
Q9MUK5	593	Translocon at the outer m	N/A	no	0.924	0.893	0.692	0.0
F4KCL7	603	Outer envelope protein 64	no	no	0.912	0.867	0.524	1e-160
Q9FR37	425	Amidase 1 OS=Arabidopsis	no	no	0.708	0.955	0.517	1e-119
Q8THJ1	476	Glutamyl-tRNA(Gln) amidot	yes	no	0.650	0.783	0.262	8e-24
Q5X4H5	483	Glutamyl-tRNA(Gln) amidot	yes	no	0.626	0.743	0.266	1e-23
Q8PXJ1	476	Glutamyl-tRNA(Gln) amidot	yes	no	0.650	0.783	0.255	1e-23
A5ICP2	483	Glutamyl-tRNA(Gln) amidot	yes	no	0.626	0.743	0.268	2e-23
Q5WVW0	483	Glutamyl-tRNA(Gln) amidot	yes	no	0.626	0.743	0.268	2e-23
P47345	477	Glutamyl-tRNA(Gln) amidot	yes	no	0.305	0.366	0.349	2e-23

>sp|Q9LVH5|OE64C_ARATH Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/540 (71%), Positives = 449/540 (83%), Gaps = 10/540 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MASQ+ANLWVLLGLGLAGIL++TKKLKK +++DFGAFI+KL LLPPPQP PPKAPHPLTG
Sbjct: 1   MASQAANLWVLLGLGLAGILMLTKKLKKTVREDFGAFIDKLMLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+FDI GYVTGFGHP+W RTH AAS TS VVSTLVEGGATC+GKTVVDEFA+SI
Sbjct: 61  LTFAVSDVFDITGYVTGFGHPDWVRTHEAASSTSPVVSTLVEGGATCVGKTVVDEFAFSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKHYD+PTNPAAP+++PGG+ SGAAVAVA + VDF+LGIDTVGGVRVP+ +CG+LGF
Sbjct: 121 SGENKHYDSPTNPAAPTRIPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           + SYGA+S+ GIIP+S+SLD+VGWFARDP  LR VGHVLLQLPFA QR+PRQII+ADDCF
Sbjct: 181 KSSYGAISNTGIIPVSSSLDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNG--------- 291
           +LLKIP DR+ QVV KS EKLFGRQ+LKH+NL  YF++KVPSLK F +T           
Sbjct: 241 QLLKIPVDRITQVVTKSAEKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTS 300

Query: 292 -ELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
             L NVM+L+QR+EF  NH +WI +VKPA+DP I +++ E  E++    EN  +IRNE R
Sbjct: 301 RLLANVMQLLQRHEFLQNHGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            AI SLLKDDGILV PT    PPKLG KE+ SEDYQNRA SLLSIAS+SGCCQVTVPLG+
Sbjct: 361 VAIGSLLKDDGILVIPTLPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGH 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           ++KCP SVSFI RHGGDRFLLDTVQ MY SLQE + I T  K S     +++SAEIAKEK
Sbjct: 421 HEKCPISVSFIGRHGGDRFLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEK 480

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQA+K+K W KAI  Y+EAIKL+ NNATYYSNRAAAYLE G FLQAE DCTKAI LDKK
Sbjct: 481 GNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKK 540

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane. Not essential for an efficient import of pre-proteins into plastids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/540 (69%), Positives = 445/540 (82%), Gaps = 10/540 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS S+ +WV+LGLGLAGI ++T+KL + +K+DFGAF+ KL+LLPPP P PPKAPHPL+ 
Sbjct: 4   MASPSSQIWVILGLGLAGIYVLTRKLTQAVKEDFGAFLLKLKLLPPPPPAPPKAPHPLSS 63

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FA+SD+FDIEG+V+ FGHPEWARTH  AS T++ VS LVE GATCIG TVVDE AY I
Sbjct: 64  LNFAISDIFDIEGHVSTFGHPEWARTHEPASSTASAVSALVESGATCIGTTVVDELAYGI 123

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKH+ TPTNPA P+++PGGSSSGAAVAVAA+ VDFSLG+DT GGVRVP+ FCGILGF
Sbjct: 124 SGENKHFGTPTNPAVPNRVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 183

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+GAVSH+GIIP+STSLDTVGWFA+DP +LR VGH+LLQ PF  QR+PRQIIIADDCF
Sbjct: 184 RPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLRRVGHILLQAPFVMQRNPRQIIIADDCF 243

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKG--FHKTNGELK---- 294
           + L +P DR  QVVIK+TEKLFG+QVLKH N  +Y  SKV SLK     K+NG LK    
Sbjct: 244 QHLNVPLDRTSQVVIKATEKLFGKQVLKHINFEDYISSKVSSLKACSIQKSNGVLKSSSL 303

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               NVM+ +QR+EF++ H+EW+  VKP L P +SA++ E  E+SE  IEN KS+R+E+R
Sbjct: 304 KLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELR 363

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            A++SLLKD+G+LV PT A PPPKLGGKE LS DYQ+RA SLLSIAS+SGCCQVTVPLG+
Sbjct: 364 VAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGF 423

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           +DK P SVS IARHGGDRFLLDT++ MY  LQEQADIA  SK S +  +++QSAEI+KEK
Sbjct: 424 FDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQEQADIAAPSKSSKSVVSKEQSAEISKEK 483

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYKDKQW KAI FYTEAIKL GNNATYYSNRA AYLE GS+LQAE DCT AI+ DKK
Sbjct: 484 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKK 543

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane.

Pisum sativum (taxid: 3888)

>sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1

 Score =  566 bits (1458), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 282/538 (52%), Positives = 376/538 (69%), Gaps = 15/538 (2%)

Query: 8   LWVLLGLGLAGILLMTKKLKKNIK----QDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSF 63
           +WV++G+ +AGI+++ +  K+ I+    +DFGAF+++ +LLP P P PP A   L+GL+F
Sbjct: 17  VWVVIGVTVAGIVILAETRKRRIRALREEDFGAFLDRFELLPFPPPPPPAAKQSLSGLTF 76

Query: 64  AVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGT 123
           ++SD FD++ Y+TGFG P+W +TH AA +T+ VV+TL++ GATC+GKT++DE  + I G 
Sbjct: 77  SISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGATCVGKTIMDELGFGIIGE 136

Query: 124 NKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPS 183
           NKHY TP NP  P  +PGG SSG+AV+V A+LVDFSLGIDT GGVRVP+AFCGILGFRPS
Sbjct: 137 NKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTTGGVRVPAAFCGILGFRPS 196

Query: 184 YGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELL 243
            G VS +G++P S SL+TVGWFA DP +L  VGH LL L     R  R +I ADD FEL 
Sbjct: 197 QGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAVTHRRQRSLIFADDLFELS 256

Query: 244 KIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKN-------- 295
            IP  + VQVV K+ E L G +  KH N+G+Y  S VPSL  F + +G+ +N        
Sbjct: 257 DIPKQKSVQVVRKAIENLSGYKTPKHVNVGQYVASNVPSLAEFCEQSGKSQNSASTLRAL 316

Query: 296 --VMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAI 353
             VM  IQR+EFK NH EW ++ K  L P  S ++   L+     I++   ++NEMR+ I
Sbjct: 317 SSVMLAIQRHEFKTNHEEWWQTCKSFLGPRFSNDVVTALKSKNESIKSLYRVKNEMRATI 376

Query: 354 SSLLKDDGILVTPTTAYPPPKLGGKEMLS-EDYQNRAFSLLSIASVSGCCQVTVPLGYYD 412
            SLLK+DGILV PT A PPP+L  K   S  ++ +R ++L  IAS+SGCCQVT+PLG + 
Sbjct: 377 QSLLKEDGILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSCIASMSGCCQVTIPLGEHG 436

Query: 413 KCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGN 472
             P SVS +  +GGD+FLLDT  ++YASLQ+QA +A+     ++T    +++E+ KEKGN
Sbjct: 437 DRPISVSLLTYYGGDKFLLDTTLDVYASLQDQAKLASNLAPVSDTNGNMEASEVMKEKGN 496

Query: 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
            AYK KQW KA++FYTEAIKLNG NATYY NRAAA+LE   F QAE DCTKA+ +DKK
Sbjct: 497 AAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKK 554

Chaperone receptor mediating Hsp90-dependent protein targeting to mitochondria.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FR37|AMI1_ARATH Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/423 (51%), Positives = 286/423 (67%), Gaps = 17/423 (4%)

Query: 31  KQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA 90
             DFGAFIEK+ +          +P  L GL+FA+ D+FD+EG VTGFG+P+W RTHSAA
Sbjct: 4   NNDFGAFIEKVTIS---PTSTSSSPPSLQGLTFAIKDIFDVEGRVTGFGNPDWLRTHSAA 60

Query: 91  SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVA 150
           + T+ VVS+L+E GAT +G T++DE AYSING N HY TP NP A  ++PGGSSSG+AVA
Sbjct: 61  TSTAPVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVA 120

Query: 151 VAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 210
           VAA LVDFS+G DT G VRVP+++CGI GFRPS+GAVS +G+ P++ S DTVGWFARD  
Sbjct: 121 VAARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDTA 180

Query: 211 ILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF-GRQVLKH 269
            L+ VG VLLQ        P Q+IIADDCF+L  +P D +VQ ++ S EK F G  V+K 
Sbjct: 181 TLKRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVVKK 240

Query: 270 ENLGEYFDSKVPSLKGFHKTNG-------------ELKNVMRLIQRYEFKNNHNEWIESV 316
            NLGEY    VPSLK F  ++               L + MRL+QR+EFK NH  WI SV
Sbjct: 241 VNLGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWISSV 300

Query: 317 KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 376
           KP   P IS  I E +  S+  I++C+S+++E+ +A+S+LL + G+LV PT   PPP L 
Sbjct: 301 KPEFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQ 360

Query: 377 GKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQN 436
                 E +++RAFSLLSIA VSG CQV++PLG ++  P SVS +A++G D FLL  V +
Sbjct: 361 ANVAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFLLSLVDS 420

Query: 437 MYA 439
           + A
Sbjct: 421 LAA 423

Amidase involved in auxin biosynthesis. Converts indole-3-acetamide into indole-3-acetic acid. Can also use L-asparagine, oleamide and 1-naphtalene-acetamide as substrates, but not indole-3-acetonitrile or indole-3-acetyl-L-aspartic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

>sp|Q8THJ1|GATA_METAC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=gatA PE=3 SV=1

 Score =  112 bits (280), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 182/431 (42%), Gaps = 58/431 (13%)

Query: 57  PLTGLSFAVSDLFDI------------EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGG 104
           PL G+  A+ D   +            EGYV  F               + V+  L++ G
Sbjct: 61  PLAGVPIAIKDNISVVGLPNSCGSKILEGYVPPF--------------NAHVIEKLLDAG 106

Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDT 164
           A  +GKT +DEFA   +    +Y    NP    ++PGGSS G+A  VAA    F+LG DT
Sbjct: 107 AVILGKTNLDEFAMGSSTETSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDT 166

Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA---RDPKILRHV--GHVL 219
            G VR P+AFCG++G +P+YGAVS  G++  + SL+ VG  A    D  IL  V  G+  
Sbjct: 167 GGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDIAILMDVIAGYDR 226

Query: 220 LQLPFAAQRSPRQIIIADDCFEL-LKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYF-D 277
                   ++  Q  + DD   L + +P +   + +    EK     + K E+LG    +
Sbjct: 227 RDSTSIDSKTEYQKALVDDVKGLKIGVPKEFFGEGIHPGVEKAVWNAIHKFESLGATRQE 286

Query: 278 SKVP----SLKGFH--KTNGELKNVMRLI-QRYEFKNNHNEWIESVKPALDPDISAEIGE 330
             +P    +L  ++    +    N+ R    RY F+ N   W   V          E+  
Sbjct: 287 VSMPNINYALASYYIIAMSEASSNLARFDGTRYGFRANGENWHAMVSKTRAEGFGTEVKR 346

Query: 331 MLEISETVIENCKSIRNEMRS-AISSLLKDD--------GILVTPTTAYPPPKLGGKEML 381
            + +    +      +  +++  + +L+K D         +L+ PT   P  ++G K   
Sbjct: 347 RILLGTYALSAGYHDKYYLKALKVRTLVKQDFDKALSTVDLLMAPTMPNPAFRIGEK--- 403

Query: 382 SEDYQNRAFSLLSIASV--SGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYA 439
            ED      S ++   +  +G   V+VP G+ D  P  +  +    G  F   TV     
Sbjct: 404 IEDPLTLYLSDVNTCPINLAGVPSVSVPCGFTDGLPVGLQIM----GKPFDEPTVLRAAY 459

Query: 440 SLQEQADIATK 450
           + ++  D  TK
Sbjct: 460 TFEKNTDYHTK 470

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q5X4H5|GATA_LEGPA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Paris) GN=gatA PE=3 SV=1

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 185/413 (44%), Gaps = 54/413 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PLTG+  A+ DLF  +   T       A     A   +T+V+   + GA  IGKT +DEF
Sbjct: 66  PLTGIPMALKDLFCTKRLNTTCASKMLANFQ--APYDATIVTKFKQNGAIIIGKTNMDEF 123

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N ++ +  NP    ++PGGSS G+A AVA +LV F++G DT G +R P+AFCG
Sbjct: 124 AMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCG 183

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIA 236
           I G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I  
Sbjct: 184 ISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSVDRVI-- 241

Query: 237 DDCFELLKIPADRV----------------VQVVIKSTEKLFGRQVLKHENLGEYFDSKV 280
            D    +K P D++                +Q  I +  KLF       ENLG       
Sbjct: 242 PDYSAEIKKPVDKIRIGLPSCFFQPQVEKGIQDAIHNAVKLF-------ENLGAEIIEID 294

Query: 281 PSLKGF------------HKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 328
             L+ F              +N    + +R   R     + +  IE +  +       E+
Sbjct: 295 LKLQPFWVPCYYVIACAEASSNLSRYDGIRFGHR---SKSASTLIELITNSRSEGFGNEV 351

Query: 329 GEMLEISETVIE---------NCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKE 379
              +     V+          + + +R  +R  + + L    +++ PTT     KLG  E
Sbjct: 352 KRRILTGTHVLSSGFFDAYYLHAQKVRRLIRDELITTLNSVDVILGPTTPTTAFKLG--E 409

Query: 380 MLSEDYQNRAFSLLSIAS-VSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
            +++  QN    + ++A+ ++G   +++P G+ +K P  +  + +H  +  LL
Sbjct: 410 KINDPIQNYLADVFTVAANLAGLPAISIPTGFENKLPIGLQLMGKHFSESRLL 462

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Legionella pneumophila (strain Paris) (taxid: 297246)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q8PXJ1|GATA_METMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=gatA PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 182/431 (42%), Gaps = 58/431 (13%)

Query: 57  PLTGLSFAVSDLFDI------------EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGG 104
           PL G+  A+ D   +            EGYV  F               + V+  L+  G
Sbjct: 61  PLAGVPIAIKDNISVVGLPNSCGSKILEGYVPPF--------------NAHVIEKLLSAG 106

Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDT 164
           A  +GKT +DEFA   +    H+    NP    ++PGGSS G+A  VAA    F+LG DT
Sbjct: 107 AVILGKTNMDEFAMGSSTETSHFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDT 166

Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA---RDPKILRHV--GHVL 219
            G VR P++FCG++G +P+YGAVS  G++  + SL+ VG  A    D  +L  V  G+  
Sbjct: 167 GGSVRCPASFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDIAVLMDVIAGYDR 226

Query: 220 LQLPFAAQRSPRQIIIADDCFEL-LKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDS 278
                   ++  Q  + DD   L + +P +   + +    EK     + K E+LG  ++ 
Sbjct: 227 RDSTSIDSKTEYQKALVDDVKGLKIGVPKEFFGEGIHPDVEKAVWDAIHKCESLGATWEE 286

Query: 279 -KVPSLK----GFH--KTNGELKNVMRLI-QRYEFKNNHNEWIESVKPALDPDISAEIGE 330
             +P +K     ++    +    N+ R    RY F+     W   V          E+  
Sbjct: 287 VSMPHIKYALASYYIIAMSEASSNLARFDGTRYGFRAGGENWHAMVSKTRAEGFGTEVKR 346

Query: 331 MLEISETVIENCKSIRNEMRS-AISSLLKDD--------GILVTPTTAYPPPKLGGKEML 381
            + +    +      +  +++  + +L+K D         +L+ PT   P  K+G K   
Sbjct: 347 RILLGTYALSAGYHDKYYLKALKVRTLVKQDFDKALSKVDLLMAPTMPNPAFKIGEK--- 403

Query: 382 SEDYQNRAFSLLSIASV--SGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYA 439
            ED      S ++   +  +G   ++VP G+ D  P  +  +    G  F  +TV     
Sbjct: 404 IEDPLTLYLSDINTCPINLAGVPSISVPCGFTDGLPIGLQIM----GKPFDEETVLRAAY 459

Query: 440 SLQEQADIATK 450
           + ++  D  TK
Sbjct: 460 TFEKNTDYHTK 470

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A5ICP2|GATA_LEGPC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Corby) GN=gatA PE=3 SV=1

 Score =  111 bits (277), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 185/413 (44%), Gaps = 54/413 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PLTG+  A+ DLF  +   T       A     A   +T+V+   + GA  IGKT +DEF
Sbjct: 66  PLTGIPMALKDLFCTKRLNTTCASKMLANFQ--APYDATIVTKFKQNGAIIIGKTNMDEF 123

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N ++ +  NP    ++PGGSS G+A AVA +LV F++G DT G +R P+AFCG
Sbjct: 124 AMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCG 183

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIA 236
           I G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I  
Sbjct: 184 ISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSVDRVI-- 241

Query: 237 DDCFELLKIPADRV----------------VQVVIKSTEKLFGRQVLKHENLGE---YFD 277
            D    +K P D++                +Q  I    KLF       ENLG      D
Sbjct: 242 PDYSAEIKKPVDKIRIGLPSCFFQPQVEKGIQDAIHDAVKLF-------ENLGAEIIEID 294

Query: 278 SKVPSL---------KGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 328
            K+  L              +N    + +R   R     + +  IE +  +       E+
Sbjct: 295 LKLQPLWVPCYYVIACAEASSNLSRYDGIRFGHR---SKSASTLIELITNSRSEGFGNEV 351

Query: 329 GEMLEISETVIE---------NCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKE 379
              +     V+          + + +R  +R  + + L    +++ PTT     KLG  E
Sbjct: 352 KRRILTGTHVLSTGFFNAYYLHAQKVRRLIRDELITTLNSVDVIIGPTTPTTAFKLG--E 409

Query: 380 MLSEDYQNRAFSLLSIAS-VSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
            +++  QN    + ++A+ ++G   +++P G+ +K P  +  + +H  +  LL
Sbjct: 410 KINDPIQNYLADVFTVAANLAGLPAISIPTGFENKLPIGLQLMGKHFSESRLL 462

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Legionella pneumophila (strain Corby) (taxid: 400673)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q5WVW0|GATA_LEGPL Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Lens) GN=gatA PE=3 SV=1

 Score =  111 bits (277), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 184/413 (44%), Gaps = 54/413 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PLTG+  A+ DLF  +   T       A     A   +T+V+   + GA  IGKT +DEF
Sbjct: 66  PLTGIPMALKDLFCTKRLNTTCASKMLANFQ--APYDATIVTKFKQNGAIIIGKTNMDEF 123

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N ++ +  NP    ++PGGSS G+A AVA  LV F++G DT G +R P+AFCG
Sbjct: 124 AMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGSLVPFAIGSDTGGSIRQPAAFCG 183

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIA 236
           I G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I  
Sbjct: 184 ISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSADRVI-- 241

Query: 237 DDCFELLKIPADRV----------------VQVVIKSTEKLFGRQVLKHENLGE---YFD 277
            D    +K P D++                +Q  I    KLF       ENLG      D
Sbjct: 242 PDYSTEIKKPVDKIRIGLPSCFFQPQVEKGIQDAIHDAVKLF-------ENLGAEIIEID 294

Query: 278 SKVPSL---------KGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 328
            K+  L              +N    + +R   R     + +  IE +  +       E+
Sbjct: 295 LKLQPLWVPCYYVIACAEASSNLSRYDGIRFGHR---SKSASTLIELITNSRSEGFGNEV 351

Query: 329 GEMLEISETVIE---------NCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKE 379
              +     V+          + + +R  +R  + ++L    +++ PTT     KLG  E
Sbjct: 352 KRRILTGTHVLSSGFFDAYYLHAQKVRRLIRDELITILNSVDVILGPTTPTTAFKLG--E 409

Query: 380 MLSEDYQNRAFSLLSIAS-VSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
            + +  QN    + ++A+ ++G   +++P G+ +K P  +  + +H  +  LL
Sbjct: 410 KIDDPIQNYLADVFTVAANLAGLPAISIPTGFENKLPIGLQLMGKHFSENRLL 462

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Legionella pneumophila (strain Lens) (taxid: 297245)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|P47345|GATA_MYCGE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=gatA PE=3 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 8/183 (4%)

Query: 93  TSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVA 152
           ++TV   L   GA  +GK  +DEF     G+   +    +P   S + GGSSSG+A AVA
Sbjct: 93  SATVFELLEMNGALLVGKANMDEFGLGGTGSYSAFGVVHHPENSSLIAGGSSSGSAYAVA 152

Query: 153 ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 212
            D+V FS+  DT   +R P++ C ++GF+P+YG +S  G+ P + S+D VG FA+    +
Sbjct: 153 KDIVPFSIATDTGDSIRRPASICNVVGFKPTYGLISRNGVFPYAPSMDHVGIFAKFVSDI 212

Query: 213 RHVGHVLL---QLPFAAQRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLFGRQVLK 268
             V  V++   +  F++Q+SP +    +  F  L IP  R ++   +K  EKLF + + K
Sbjct: 213 AIVSDVVIKHDKTDFSSQKSPDE----NQFFNELAIPFTRSIRFGYLKPLEKLFNKHLQK 268

Query: 269 HEN 271
             N
Sbjct: 269 KWN 271

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	573
225456155	590	PREDICTED: translocon at the outer membr	0.924	0.898	0.777	0.0
255579275	589	amidase, putative [Ricinus communis] gi|	0.923	0.898	0.755	0.0
224135565	592	amidase family protein [Populus trichoca	0.923	0.893	0.744	0.0
224118646	593	amidase family protein [Populus trichoca	0.923	0.892	0.743	0.0
357521651	594	Glutamyl-tRNA(Gln) amidotransferase subu	0.923	0.890	0.716	0.0
449497473	591	PREDICTED: translocon at the outer membr	0.924	0.896	0.735	0.0
356512970	587	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.888	0.867	0.699	0.0
449439139	585	PREDICTED: LOW QUALITY PROTEIN: transloc	0.914	0.895	0.724	0.0
356524688	591	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.888	0.861	0.718	0.0
30684733	589	translocon at the outer membrane of chlo	0.924	0.899	0.714	0.0

>gi|225456155|ref|XP_002282402.1| PREDICTED: translocon at the outer membrane of chloroplasts 64 [Vitis vinifera] gi|297734325|emb|CBI15572.3| unnamed protein product [Vitis vinifera]

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/540 (77%), Positives = 473/540 (87%), Gaps = 10/540 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS SANLWVLLGLGLAG+LLMT+KLKK I++DFGAF+++LQLLPPPQP PPKAPHPLT 
Sbjct: 1   MASSSANLWVLLGLGLAGVLLMTRKLKKTIREDFGAFVQRLQLLPPPQPAPPKAPHPLTN 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           LSFAVSD+FDIEGYVTGFG+P+WARTH  ASRTS VVS LVEGGATC GKTVVDE AYSI
Sbjct: 61  LSFAVSDVFDIEGYVTGFGNPDWARTHDTASRTSPVVSALVEGGATCTGKTVVDEMAYSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           NG NKHY TPTNPAAPS++PGGSSSGAAVAVAA+ VDFSLG+DTVGGVRVP+AFCG++GF
Sbjct: 121 NGENKHYGTPTNPAAPSRIPGGSSSGAAVAVAANFVDFSLGLDTVGGVRVPAAFCGVIGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+GAVSHMGII +S+SLDTVGWFA+DP ILR VGHVLLQL +A QRSPRQII ADDCF
Sbjct: 181 RPSHGAVSHMGIIHVSSSLDTVGWFAKDPSILRRVGHVLLQLTYAVQRSPRQIIFADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELKN--- 295
           + L+IP DRV QVV+KSTEKLFGRQVLK ENL  Y DSKVPSLK FH  KTNGE +N   
Sbjct: 241 QSLRIPVDRVYQVVLKSTEKLFGRQVLKRENLENYLDSKVPSLKAFHSQKTNGETRNSLI 300

Query: 296 -----VMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
                +M  +QR+EFK+NH EWI SVKP LD  IS+++ ++LE+++T IENC+S R E+R
Sbjct: 301 RSLVKIMHCLQRHEFKHNHEEWINSVKPILDASISSQLHDVLEVADTEIENCQSSRMEIR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
           SA++SLLKDDGILV PT A PPPKLGGKE LSE+YQNR   LLSIAS+SGCCQVTVPLG 
Sbjct: 361 SALNSLLKDDGILVIPTVADPPPKLGGKESLSEEYQNRTLGLLSIASMSGCCQVTVPLGL 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           YDK P SVSF+ARHGGDRFLLDTVQ MYASLQEQADIA KSKLS+N  +++ SAEIAKEK
Sbjct: 421 YDKYPVSVSFMARHGGDRFLLDTVQTMYASLQEQADIAAKSKLSSNAVDRETSAEIAKEK 480

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQA+KDKQW KA+ FYTEAIKL+GNNATYYSNRAAAYLE GSFLQAEADCT+AINLDKK
Sbjct: 481 GNQAFKDKQWQKAVGFYTEAIKLSGNNATYYSNRAAAYLEMGSFLQAEADCTEAINLDKK 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579275|ref|XP_002530483.1| amidase, putative [Ricinus communis] gi|223529980|gb|EEF31906.1| amidase, putative [Ricinus communis]

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/540 (75%), Positives = 468/540 (86%), Gaps = 11/540 (2%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           M S  ANLWVLLGLG+AGILL+TKKLKK I++DFGAF++KLQLLPPP P PPKAPHPLTG
Sbjct: 1   MGSNPANLWVLLGLGIAGILLVTKKLKKVIREDFGAFVQKLQLLPPPPPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+FDIEGYVTGFGHP+WARTH AAS+TS VVS LVEGGATCIGKTVVDE AYSI
Sbjct: 61  LTFAVSDVFDIEGYVTGFGHPDWARTHEAASQTSLVVSALVEGGATCIGKTVVDELAYSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           NG N+HY TPTNPA P+++PGGSSSGAAVAVAA+LVDFSLG+DTVGGVRVP+ FCGI+GF
Sbjct: 121 NGENEHYGTPTNPAVPARVPGGSSSGAAVAVAANLVDFSLGVDTVGGVRVPAGFCGIIGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPSYGA+ + GI+PIS SLDTVGWFARDP ++R VGH+LLQLPF  QR+P+QIIIADDCF
Sbjct: 181 RPSYGAIPNTGILPISASLDTVGWFARDPNVIRRVGHLLLQLPFGVQRNPKQIIIADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELK---- 294
           +LLKIP DR+ QVVIKSTEK+FGRQVL+HE L +   S+V SLK  H  KTNGEL+    
Sbjct: 241 QLLKIPVDRIAQVVIKSTEKIFGRQVLRHEILEDVLFSRVRSLKLLHDQKTNGELRTSSI 300

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+MRL+ RYEF++NH EWI   KP +D +ISA+I E+++I +T IE  KSIR EMR
Sbjct: 301 RLLANIMRLLHRYEFRHNHEEWINIEKPNVDHNISAQIHEIVDIPDTEIEIFKSIRQEMR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
           +AI+SLLKDDGILV PTTA+ PPKLGGK+MLSEDYQ   FSLLSIAS+SGCCQVT+PLG 
Sbjct: 361 AAINSLLKDDGILVIPTTAHLPPKLGGKDMLSEDYQILLFSLLSIASLSGCCQVTIPLGL 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           Y+KCP SVSFIARHGGDRFL+DTVQNMY+SLQEQ D+  K K  T+  NQ++SAE+AKEK
Sbjct: 421 YEKCPVSVSFIARHGGDRFLMDTVQNMYSSLQEQVDMLAKPKSHTSD-NQERSAEMAKEK 479

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYK+KQW KAIS+YTEAIKLNG NATYYSNRAAAYLE GSFLQAEADCTKAINLDKK
Sbjct: 480 GNQAYKEKQWQKAISYYTEAIKLNGKNATYYSNRAAAYLELGSFLQAEADCTKAINLDKK 539

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135565|ref|XP_002322105.1| amidase family protein [Populus trichocarpa] gi|222869101|gb|EEF06232.1| amidase family protein [Populus trichocarpa]

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/540 (74%), Positives = 463/540 (85%), Gaps = 11/540 (2%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS  ANLWVLLGLGLAGI L TKK KK +++DFGAFI KLQLLPPPQP PPKAPHPLTG
Sbjct: 1   MASNPANLWVLLGLGLAGIFLFTKKFKKVLREDFGAFIHKLQLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSDLFDIEGYVTGFGHP+WA+TH AASRTS VVSTLVEGGATC+GKTV+DE AYSI
Sbjct: 61  LTFAVSDLFDIEGYVTGFGHPDWAKTHEAASRTSVVVSTLVEGGATCVGKTVIDELAYSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
            G NKHY TPTNP  P+++PGGSSSGAAVAVAA+LVDFSLG+DTVGGVRVP+ FCGI+GF
Sbjct: 121 TGENKHYGTPTNPVEPARVPGGSSSGAAVAVAANLVDFSLGVDTVGGVRVPAGFCGIIGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPSYGA+S +G++P+S SLDTVGWFA+DP ILR VGHVLLQ  F  QRSPRQII+ADDCF
Sbjct: 181 RPSYGAISKIGVLPVSVSLDTVGWFAKDPNILRRVGHVLLQSAFGGQRSPRQIIMADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELK---- 294
           +LLKIP DR+ QVV+KSTEK FGRQ+LKHE L  Y +SKVPSLK FH  KTNGE+K    
Sbjct: 241 QLLKIPVDRIAQVVVKSTEKHFGRQLLKHEILDVYLNSKVPSLKEFHNKKTNGEVKTSSI 300

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               NVM+L+ RYEF++NH EWI +VKP L+P++SA++ E++E+S+  IE CKSIR EMR
Sbjct: 301 RLLANVMQLLHRYEFRSNHEEWINTVKPILEPNLSAQMNEIMELSDAEIELCKSIREEMR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
           SAI+SLLKDDGILV PTTAY PPKLGGKE+LSE+YQ+ +F LLSIAS+SGCCQVTVPLGY
Sbjct: 361 SAINSLLKDDGILVVPTTAYLPPKLGGKEILSEEYQSSSFGLLSIASLSGCCQVTVPLGY 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           Y+KCP SVS IARHG DRFLLDTVQ MY +LQEQA+    SK S+N  +++ SAE+AKEK
Sbjct: 421 YNKCPVSVSLIARHGSDRFLLDTVQTMYKTLQEQAETYVNSK-SSNKDSRENSAEMAKEK 479

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQA+K++QW KAIS+Y EAIKLN  NATYYSNRAAAYLE GSF  AEADC+ AINLDKK
Sbjct: 480 GNQAFKEQQWQKAISYYNEAIKLNDKNATYYSNRAAAYLELGSFQHAEADCSNAINLDKK 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118646|ref|XP_002317872.1| amidase family protein [Populus trichocarpa] gi|222858545|gb|EEE96092.1| amidase family protein [Populus trichocarpa]

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/541 (74%), Positives = 461/541 (85%), Gaps = 12/541 (2%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNI-KQDFGAFIEKLQLLPPPQPLPPKAPHPLT 59
           MAS SANLWVLLGLGLAGILLMTKK KK+I +QDFGAFIEKL L+PPPQP PPKAPHPLT
Sbjct: 1   MASNSANLWVLLGLGLAGILLMTKKFKKSIIRQDFGAFIEKLLLVPPPQPPPPKAPHPLT 60

Query: 60  GLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS 119
            L+FAVSDLF+IEGYV+GFGHPEWA+TH AASRTS VVSTLV+GGATC+GKTV+DE AYS
Sbjct: 61  ALTFAVSDLFEIEGYVSGFGHPEWAKTHQAASRTSLVVSTLVDGGATCVGKTVIDELAYS 120

Query: 120 INGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILG 179
           I+G NKHY TP NP  P+++PGGS SGAAVAVAA+LVDFSLG+DTVGGVRVP+ FCG++G
Sbjct: 121 IHGENKHYGTPINPVVPARVPGGSCSGAAVAVAANLVDFSLGVDTVGGVRVPAGFCGVIG 180

Query: 180 FRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDC 239
           FRPSYGA+S  G++P+S SLDTVGWFA+DP ILR VGHVLLQ  F  QRSPRQII+A+DC
Sbjct: 181 FRPSYGAISKTGVLPVSASLDTVGWFAKDPNILRRVGHVLLQPAFGGQRSPRQIIMAEDC 240

Query: 240 FELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELK--- 294
           F+LLKIP DRV QVV+ STEK FGRQVLKHE L  Y +SKVPSLK FH  K NG++K   
Sbjct: 241 FQLLKIPVDRVAQVVVNSTEKHFGRQVLKHEILDVYLNSKVPSLKEFHNKKKNGDVKTSS 300

Query: 295 -----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM 349
                +VM+L+ RYEF++NH EWI + KP L+PD SA++ E+++ISE  IE CKSIR EM
Sbjct: 301 IRLLAHVMQLLHRYEFRSNHEEWINTEKPILEPDFSAQMNEIMKISEAEIELCKSIREEM 360

Query: 350 RSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLG 409
           R AI+SLLKDDGILV PT AY PPKL GKE+LSE+Y++ +FSLLSIAS+SGCCQVTVPLG
Sbjct: 361 RLAINSLLKDDGILVVPTMAYLPPKLDGKEILSEEYKSSSFSLLSIASLSGCCQVTVPLG 420

Query: 410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKE 469
           YYDKCP SVS IARHG DRFLLDT+Q MYASLQEQA+   KSK S NT + + SAE+AKE
Sbjct: 421 YYDKCPVSVSLIARHGNDRFLLDTLQTMYASLQEQAETHVKSK-SRNTDSGENSAEMAKE 479

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           KGNQA+K+KQW KAIS+Y EAIKLN  NATYYSNRAAAYLE GSF QAEADC+KAINLDK
Sbjct: 480 KGNQAFKEKQWKKAISYYNEAIKLNDKNATYYSNRAAAYLELGSFHQAEADCSKAINLDK 539

Query: 530 K 530
           K
Sbjct: 540 K 540

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521651|ref|XP_003631114.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|355525136|gb|AET05590.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula]

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/540 (71%), Positives = 451/540 (83%), Gaps = 11/540 (2%)

Query: 2   ASQSAN-LWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           +SQS+N LWVLLGLGLAGI ++T+KLK+ +K+D GAFI+KLQLLPPP P PPKAPHPLT 
Sbjct: 6   SSQSSNNLWVLLGLGLAGIYVLTRKLKQTVKEDLGAFIQKLQLLPPPPPAPPKAPHPLTS 65

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FA+SDLFDIEG+V+ FGHPEWARTH  AS TS  VSTLV+ GATCI  TV+D  +Y I
Sbjct: 66  LTFAISDLFDIEGHVSTFGHPEWARTHEPASSTSPAVSTLVQSGATCIATTVLDNLSYGI 125

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKH+ TP+NPA P+++PGGSSSGAAVAVAA+ VDFSLG+DT GGVRVP+ FCGILGF
Sbjct: 126 SGENKHFGTPSNPAIPARVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 185

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+GAVSH GIIP+STSLDTVGWFA+DP ILR VGH+LLQ PF  QRSPRQIIIADDCF
Sbjct: 186 RPSHGAVSHGGIIPVSTSLDTVGWFAKDPDILRRVGHILLQAPFVMQRSPRQIIIADDCF 245

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK---- 294
           + L +P DR  QVVIK+TEKLFG+QVLKH NL  Y  SKVPSLK     K NGELK    
Sbjct: 246 QHLNVPLDRSSQVVIKATEKLFGKQVLKHINLEGYIRSKVPSLKACSGQKANGELKSSSL 305

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+M+ +QR+EF + H+EW+  VKP L P +SA++ E  ++SE  +EN KS+R+EMR
Sbjct: 306 ILLANIMQFLQRHEFGHMHDEWMSIVKPDLHPAVSAQLHEKFDVSEVEMENSKSVRSEMR 365

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            A++SLLKD+GILV PT A PPPKLGGKE+LS+DYQ+RAFSLLSIAS+SGCCQVTVPLG+
Sbjct: 366 VAVNSLLKDEGILVIPTVADPPPKLGGKEILSQDYQSRAFSLLSIASISGCCQVTVPLGF 425

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           YDK P SVS IAR+GGDRFLLDT++ MY SLQEQADIA  SK S N  +++QSAEIAKEK
Sbjct: 426 YDKYPVSVSLIARYGGDRFLLDTLKTMYTSLQEQADIAATSKASRNVVSKEQSAEIAKEK 485

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYKDKQW KAI FYTEAIKL GNNATYYSNRA AYLE GS+LQAEADCTKAI+LDKK
Sbjct: 486 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEADCTKAISLDKK 545

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497473|ref|XP_004160411.1| PREDICTED: translocon at the outer membrane of chloroplasts 64-like [Cucumis sativus]

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/540 (73%), Positives = 457/540 (84%), Gaps = 10/540 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS SANLWVLLGLGLAGILLMTKKLKK I++DFGAFIEK QLLPPPQP PPKAPHPLTG
Sbjct: 1   MASNSANLWVLLGLGLAGILLMTKKLKKAIREDFGAFIEKFQLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+F+IEG+VTGFGHP+WA+TH AASRTS VVS LVEGGATCIGKTV +E +  I
Sbjct: 61  LTFAVSDVFEIEGHVTGFGHPDWAKTHDAASRTSPVVSALVEGGATCIGKTVTNELSMGI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NK+Y+TPTNPA+ S++PGGSSSGAAVAVAA+LVDFSLGIDTVG VR+P++FCGILGF
Sbjct: 121 SGENKYYETPTNPASHSKVPGGSSSGAAVAVAANLVDFSLGIDTVGDVRIPASFCGILGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+G+VS +GI+P+S SLDTVG FA+DP +LR VGHVLLQLP+A QR+PRQIIIADDCF
Sbjct: 181 RPSHGSVSQVGIVPVSLSLDTVGMFAKDPNVLRRVGHVLLQLPYAVQRNPRQIIIADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK---- 294
           +LLKIP DR+ Q V KSTEKLFGRQ LKHENLG Y  SKVP+LK     KTNG L     
Sbjct: 241 QLLKIPVDRITQAVTKSTEKLFGRQALKHENLGSYLSSKVPNLKELIGKKTNGNLNSASI 300

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+M+ ++R EFK NH EWI+SVKP LD  +  ++ E LEIS+T+IE  KS+RNEMR
Sbjct: 301 RVLANLMQTVERIEFKGNHGEWIDSVKPDLDSALMEQLNEKLEISDTMIEKFKSVRNEMR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            AI+SLLKDDG+LV PTT  PPPKLGGKE+ SE+YQ R FS LSIAS+SGCCQVT+PLG+
Sbjct: 361 MAINSLLKDDGVLVIPTTVDPPPKLGGKEIFSEEYQTRVFSSLSIASISGCCQVTLPLGF 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           +D CP SVSF+ARHG DRFLLD VQ MY SLQE+A+ A+KSK S N  +Q+QSAEIAKEK
Sbjct: 421 HDSCPVSVSFLARHGADRFLLDIVQTMYKSLQEEAEAASKSKFSKNAVSQEQSAEIAKEK 480

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYK+KQW KAI  YTEAIKLN  NATYYSNRAAAYLE G F QAEADC+KAI+LDKK
Sbjct: 481 GNQAYKEKQWEKAIGCYTEAIKLNSRNATYYSNRAAAYLELGRFHQAEADCSKAIDLDKK 540

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512970|ref|XP_003525187.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/519 (69%), Positives = 434/519 (83%), Gaps = 10/519 (1%)

Query: 22  MTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP 81
           +T+KL K++++DFGAFI KLQLLPPPQP PPKAPHPLT L+FA+SDLF I G+V  FGHP
Sbjct: 19  ITRKLNKSVREDFGAFIHKLQLLPPPQPSPPKAPHPLTSLTFALSDLFHIHGHVPSFGHP 78

Query: 82  EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPG 141
           +WARTH  +S T+  VS LVEGGATC+  TV+D+ A  I G NKH+ TPTNPA P+++PG
Sbjct: 79  DWARTHEPSSSTAPAVSALVEGGATCVATTVLDDLALGIGGENKHFGTPTNPAVPARVPG 138

Query: 142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDT 201
           GSSSGAAVAVAA+ VDF+LGIDT GGVRVP+ FCGILGFRPS+GAVSHMGIIPISTSLDT
Sbjct: 139 GSSSGAAVAVAANFVDFALGIDTTGGVRVPAGFCGILGFRPSHGAVSHMGIIPISTSLDT 198

Query: 202 VGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKL 261
           VGWFA+DP ILR VGH+LLQ PF  QRSPRQI+IADDCF+ + +P DR  QVV+K+TEKL
Sbjct: 199 VGWFAKDPNILRRVGHILLQAPFVMQRSPRQIVIADDCFQHINVPLDRSSQVVVKATEKL 258

Query: 262 FGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK--------NVMRLIQRYEFKNNHNE 311
           FGRQVLKH NLG+Y  S+VPSLKG    K NGE+K        ++M+ +QR+EF+  H++
Sbjct: 259 FGRQVLKHINLGDYLSSRVPSLKGCSGQKPNGEVKASSLKLLAHIMQFLQRHEFRLKHDD 318

Query: 312 WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYP 371
           W+ +VKP L P +SA++ E  E+S+  IEN KS+R+EMR+A++SLLKD+GILV PT A P
Sbjct: 319 WMNTVKPDLHPGVSAQLHEKFEVSDAEIENSKSVRSEMRAAVNSLLKDEGILVIPTVADP 378

Query: 372 PPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
           PPKLGGKE+LSEDYQ+RAFSLLSIAS+SGCCQV++PLG+YDK P SVS IARHGGDRFLL
Sbjct: 379 PPKLGGKEILSEDYQSRAFSLLSIASISGCCQVSIPLGFYDKYPVSVSLIARHGGDRFLL 438

Query: 432 DTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491
           DT+Q +Y +LQEQADIA+KSK S N  +++QSAEIAKEKGNQAYKDKQW KAI FYTEAI
Sbjct: 439 DTLQTVYTTLQEQADIASKSKSSGNVVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAI 498

Query: 492 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           KL G+NATYYSNRA AYLE  S+LQA  DCTKAI+LDKK
Sbjct: 499 KLCGDNATYYSNRAQAYLELESYLQAVEDCTKAISLDKK 537

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439139|ref|XP_004137345.1| PREDICTED: LOW QUALITY PROTEIN: translocon at the outer membrane of chloroplasts 64-like [Cucumis sativus]

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/540 (72%), Positives = 450/540 (83%), Gaps = 16/540 (2%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS SANLWVLLGLGLAGILLMTKKLKK I++DFGAFIEK QLLPPPQP PPKAPHPLTG
Sbjct: 1   MASNSANLWVLLGLGLAGILLMTKKLKKAIREDFGAFIEKFQLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+F+IEG+VTGFGHP+WA+TH AA       S LVEGGATCIGKTV +E +  I
Sbjct: 61  LTFAVSDVFEIEGHVTGFGHPDWAKTHDAAX------SALVEGGATCIGKTVTNELSMGI 114

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKHY+TPTNPA+ S++PGGSSSGAAVAVAA+LVDFSLGIDTVG VR+P++FCGILGF
Sbjct: 115 SGENKHYETPTNPASHSKVPGGSSSGAAVAVAANLVDFSLGIDTVGDVRIPASFCGILGF 174

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+G+VS +GI+P+S SLDTVG FA+DP +LR VGHVLLQLP+A QR+PRQIIIADDCF
Sbjct: 175 RPSHGSVSQVGIVPVSLSLDTVGMFAKDPNVLRRVGHVLLQLPYAVQRNPRQIIIADDCF 234

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK---- 294
           +LLKIP DR+ Q V KSTEKLFGRQ LKHENLG Y  SKVP+LK     KTNG L     
Sbjct: 235 QLLKIPVDRITQAVTKSTEKLFGRQALKHENLGSYLSSKVPNLKELIGKKTNGNLNSASI 294

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+M+ ++R EFK NH EWI+SVKP LD  +  ++ E LEIS+T+IE  KS+RNEMR
Sbjct: 295 RVLANLMQTVERIEFKGNHGEWIDSVKPDLDSALMEQLNEKLEISDTMIEKFKSVRNEMR 354

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            AI+SLLKDDG+LV PTT   PPKLGGKE+ SE+YQ R FS LSIAS+SGCCQVT+PLG+
Sbjct: 355 MAINSLLKDDGVLVIPTTVDSPPKLGGKEIFSEEYQTRVFSSLSIASISGCCQVTLPLGF 414

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           +D CP SVSF+ARHG DRFLLD VQ MY SLQE+A+ A+KSK S N  +Q+QSAEIAKEK
Sbjct: 415 HDSCPVSVSFLARHGADRFLLDIVQTMYRSLQEEAEAASKSKFSKNAVSQEQSAEIAKEK 474

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYK+KQW KAI  YTEAIKLN  NATYYSNRAAAYLE G F QAEADC+KAI+LDKK
Sbjct: 475 GNQAYKEKQWEKAIGCYTEAIKLNSRNATYYSNRAAAYLELGRFHQAEADCSKAIDLDKK 534

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524688|ref|XP_003530960.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/519 (71%), Positives = 440/519 (84%), Gaps = 10/519 (1%)

Query: 22  MTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP 81
           +T+KLKK++++D GAFIEKLQLLPPPQP PPKAPHPLT L+FA+SDLFDIEG+V+ FGHP
Sbjct: 23  ITRKLKKSVRKDLGAFIEKLQLLPPPQPAPPKAPHPLTALTFALSDLFDIEGHVSTFGHP 82

Query: 82  EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPG 141
           EWARTH  AS T+  VS LVEGGATC+  TV+D+ A  I G NKHY TPTNPA P+++PG
Sbjct: 83  EWARTHEPASSTAPAVSALVEGGATCVATTVLDDLALGIGGENKHYGTPTNPAVPARVPG 142

Query: 142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDT 201
           GSSSGAAVAVAAD VDF+LGIDTVGGVRVP+ FCGILGFRPS+GAVSH+GIIPISTSLDT
Sbjct: 143 GSSSGAAVAVAADFVDFALGIDTVGGVRVPAGFCGILGFRPSHGAVSHLGIIPISTSLDT 202

Query: 202 VGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKL 261
           VGWFA+DP ILR VGH+LLQ PFA QRSPRQI+IADDCF+ + +P DR  QVV+K+TEKL
Sbjct: 203 VGWFAKDPNILRRVGHILLQAPFAMQRSPRQIVIADDCFQHINVPLDRSSQVVVKTTEKL 262

Query: 262 FGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK--------NVMRLIQRYEFKNNHNE 311
           FGRQVLKH NLG+Y  S+VPSLKG    KTNGE+K        N+M+ +QR+EF+  H+E
Sbjct: 263 FGRQVLKHINLGDYLSSRVPSLKGCSGQKTNGEVKASALKLLANIMQSLQRHEFRLKHDE 322

Query: 312 WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYP 371
           W+ +VKP L P +SA++ E  E+S+  IEN KS+R+EM +A++SLLKD+GILV PT A P
Sbjct: 323 WMNTVKPELHPGVSAQLHEKFEVSDAEIENSKSVRSEMCAAVNSLLKDEGILVIPTVADP 382

Query: 372 PPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
           PPKLGGKE+LSEDYQ+RAFSLLSIAS+SGCCQV++PLG+YDK P SVS IARHGGDRFLL
Sbjct: 383 PPKLGGKEILSEDYQSRAFSLLSIASISGCCQVSIPLGFYDKYPVSVSLIARHGGDRFLL 442

Query: 432 DTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491
           DT+Q +Y +LQEQADIA+KSK S N  +++QSAEIAKEKGNQAYKDKQW KAI FYTEAI
Sbjct: 443 DTLQTVYTTLQEQADIASKSKSSGNAVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAI 502

Query: 492 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           KL G+NATYYSNRA AYL  GS+LQA  DCTKAI+LDKK
Sbjct: 503 KLCGDNATYYSNRAQAYLGLGSYLQAVEDCTKAISLDKK 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684733|ref|NP_188424.2| translocon at the outer membrane of chloroplasts 64-III [Arabidopsis thaliana] gi|75335547|sp|Q9LVH5.1|OE64C_ARATH RecName: Full=Outer envelope protein 64, chloroplastic; AltName: Full=Translocon at the outer membrane of chloroplasts 64-III gi|9294499|dbj|BAB02718.1| unnamed protein product [Arabidopsis thaliana] gi|332642509|gb|AEE76030.1| translocon at the outer membrane of chloroplasts 64-III [Arabidopsis thaliana]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/540 (71%), Positives = 449/540 (83%), Gaps = 10/540 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MASQ+ANLWVLLGLGLAGIL++TKKLKK +++DFGAFI+KL LLPPPQP PPKAPHPLTG
Sbjct: 1   MASQAANLWVLLGLGLAGILMLTKKLKKTVREDFGAFIDKLMLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+FDI GYVTGFGHP+W RTH AAS TS VVSTLVEGGATC+GKTVVDEFA+SI
Sbjct: 61  LTFAVSDVFDITGYVTGFGHPDWVRTHEAASSTSPVVSTLVEGGATCVGKTVVDEFAFSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKHYD+PTNPAAP+++PGG+ SGAAVAVA + VDF+LGIDTVGGVRVP+ +CG+LGF
Sbjct: 121 SGENKHYDSPTNPAAPTRIPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           + SYGA+S+ GIIP+S+SLD+VGWFARDP  LR VGHVLLQLPFA QR+PRQII+ADDCF
Sbjct: 181 KSSYGAISNTGIIPVSSSLDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNG--------- 291
           +LLKIP DR+ QVV KS EKLFGRQ+LKH+NL  YF++KVPSLK F +T           
Sbjct: 241 QLLKIPVDRITQVVTKSAEKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTS 300

Query: 292 -ELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
             L NVM+L+QR+EF  NH +WI +VKPA+DP I +++ E  E++    EN  +IRNE R
Sbjct: 301 RLLANVMQLLQRHEFLQNHGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            AI SLLKDDGILV PT    PPKLG KE+ SEDYQNRA SLLSIAS+SGCCQVTVPLG+
Sbjct: 361 VAIGSLLKDDGILVIPTLPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGH 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           ++KCP SVSFI RHGGDRFLLDTVQ MY SLQE + I T  K S     +++SAEIAKEK
Sbjct: 421 HEKCPISVSFIGRHGGDRFLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEK 480

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQA+K+K W KAI  Y+EAIKL+ NNATYYSNRAAAYLE G FLQAE DCTKAI LDKK
Sbjct: 481 GNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKK 540

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	573
TAIR|locus:2088600	589	TOC64-III "translocon at the o	0.924	0.899	0.620	3.5e-178
UNIPROTKB|Q9MUK5	593	TOC64 "Translocon at the outer	0.924	0.893	0.603	1.3e-171
TAIR|locus:2184757	603	TOC64-V "AT5G09420" [Arabidops	0.884	0.840	0.478	9.9e-126
TAIR|locus:2036029	425	AMI1 "AT1G08980" [Arabidopsis	0.705	0.950	0.465	6.8e-95
UNIPROTKB|Q60AB7	341	MCA0950 "Amidase family protei	0.572	0.961	0.311	2.4e-37
TIGR_CMR|DET_1335	486	DET_1335 "glutamyl-tRNA(Gln) a	0.190	0.224	0.376	9.2e-17
TIGR_CMR|CHY_1102	485	CHY_1102 "glutamyl-tRNA(Gln) a	0.322	0.381	0.310	2.5e-16
UNIPROTKB|Q936X3	457	atzE "Biuret hydrolase" [Pseud	0.249	0.312	0.326	3.7e-16
SGD|S000004907	464	HER2 "Subunit of the trimeric	0.209	0.258	0.382	4.1e-16
CGD|CAL0003013	450	orf19.3956 [Candida albicans (	0.209	0.266	0.341	5.8e-15

TAIR|locus:2088600 TOC64-III "translocon at the outer membrane of chloroplasts 64-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 1711 (607.4 bits), Expect = 3.5e-178, Sum P(2) = 3.5e-178
 Identities = 335/540 (62%), Positives = 397/540 (73%)

Query:     1 MASQSANXXXXXXXXXXXXXXMTKKLKKNIKQDFGAFIEXXXXXXXXXXXXXXXXXXXTG 60
             MASQ+AN              +TKKLKK +++DFGAFI+                   TG
Sbjct:     1 MASQAANLWVLLGLGLAGILMLTKKLKKTVREDFGAFIDKLMLLPPPQPAPPKAPHPLTG 60

Query:    61 LSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSI 120
             L+FAVSD+FDI GYVTGFGHP+W                LVEGGATC+GKTVVDEFA+SI
Sbjct:    61 LTFAVSDVFDITGYVTGFGHPDWVRTHEAASSTSPVVSTLVEGGATCVGKTVVDEFAFSI 120

Query:   121 NGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGF 180
             +G NKHYD+PTNPAAP+++P             + VDF+LGIDTVGGVRVP+ +CG+LGF
Sbjct:   121 SGENKHYDSPTNPAAPTRIPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGF 180

Query:   181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
             + SYGA+S+ GIIP+S+SLD+VGWFARDP  LR VGHVLLQLPFA QR+PRQII+ADDCF
Sbjct:   181 KSSYGAISNTGIIPVSSSLDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCF 240

Query:   241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKT----NGE---- 292
             +LLKIP DR+ QVV KS EKLFGRQ+LKH+NL  YF++KVPSLK F +T    N +    
Sbjct:   241 QLLKIPVDRITQVVTKSAEKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTS 300

Query:   293 --LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               L NVM+L+QR+EF  NH +WI +VKPA+DP I +++ E  E++    EN  +IRNE R
Sbjct:   301 RLLANVMQLLQRHEFLQNHGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETR 360

Query:   351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
              AI SLLKDDGILV PT    PPKLG KE+ SEDYQNRA SLLSIAS+SGCCQVTVPLG+
Sbjct:   361 VAIGSLLKDDGILVIPTLPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGH 420

Query:   411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
             ++KCP SVSFI RHGGDRFLLDTVQ MY SLQE + I T  K S     +++SAEIAKEK
Sbjct:   421 HEKCPISVSFIGRHGGDRFLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEK 480

Query:   471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             GNQA+K+K W KAI  Y+EAIKL+ NNATYYSNRAAAYLE G FLQAE DCTKAI LDKK
Sbjct:   481 GNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKK 540

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q9MUK5 TOC64 "Translocon at the outer membrane of chloroplasts 64" [Pisum sativum (taxid:3888)]

 Score = 1668 (592.2 bits), Expect = 1.3e-171, P = 1.3e-171
 Identities = 326/540 (60%), Positives = 391/540 (72%)

Query:     1 MASQSANXXXXXXXXXXXXXXMTKKLKKNIKQDFGAFIEXXXXXXXXXXXXXXXXXXXTG 60
             MAS S+               +T+KL + +K+DFGAF+                    + 
Sbjct:     4 MASPSSQIWVILGLGLAGIYVLTRKLTQAVKEDFGAFLLKLKLLPPPPPAPPKAPHPLSS 63

Query:    61 LSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSI 120
             L+FA+SD+FDIEG+V+ FGHPEW                LVE GATCIG TVVDE AY I
Sbjct:    64 LNFAISDIFDIEGHVSTFGHPEWARTHEPASSTASAVSALVESGATCIGTTVVDELAYGI 123

Query:   121 NGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGF 180
             +G NKH+ TPTNPA P+++P             + VDFSLG+DT GGVRVP+ FCGILGF
Sbjct:   124 SGENKHFGTPTNPAVPNRVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 183

Query:   181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
             RPS+GAVSH+GIIP+STSLDTVGWFA+DP +LR VGH+LLQ PF  QR+PRQIIIADDCF
Sbjct:   184 RPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLRRVGHILLQAPFVMQRNPRQIIIADDCF 243

Query:   241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKG--FHKTNGELK---- 294
             + L +P DR  QVVIK+TEKLFG+QVLKH N  +Y  SKV SLK     K+NG LK    
Sbjct:   244 QHLNVPLDRTSQVVIKATEKLFGKQVLKHINFEDYISSKVSSLKACSIQKSNGVLKSSSL 303

Query:   295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
                 NVM+ +QR+EF++ H+EW+  VKP L P +SA++ E  E+SE  IEN KS+R+E+R
Sbjct:   304 KLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELR 363

Query:   351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
              A++SLLKD+G+LV PT A PPPKLGGKE LS DYQ+RA SLLSIAS+SGCCQVTVPLG+
Sbjct:   364 VAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGF 423

Query:   411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
             +DK P SVS IARHGGDRFLLDT++ MY  LQEQADIA  SK S +  +++QSAEI+KEK
Sbjct:   424 FDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQEQADIAAPSKSSKSVVSKEQSAEISKEK 483

Query:   471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             GNQAYKDKQW KAI FYTEAIKL GNNATYYSNRA AYLE GS+LQAE DCT AI+ DKK
Sbjct:   484 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKK 543

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2184757 TOC64-V "AT5G09420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
 Identities = 248/518 (47%), Positives = 328/518 (63%)

Query:    24 KKLKKNIKQDFGAFIEXXXXXXXXXXXXXXXXXXXTGLSFAVSDLFDIEGYVTGFGHPEW 83
             ++++   ++DFGAF++                   +GL+F++SD FD++ Y+TGFG P+W
Sbjct:    37 RRIRALREEDFGAFLDRFELLPFPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQW 96

Query:    84 XXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXX 143
                             L++ GATC+GKT++DE  + I G NKHY TP NP  P  +P   
Sbjct:    97 KKTHEAAEKTAVVVTTLLKNGATCVGKTIMDELGFGIIGENKHYGTPINPLMPDNVPGGC 156

Query:   144 XXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 203
                       +LVDFSLGIDT GGVRVP+AFCGILGFRPS G VS +G++P S SL+TVG
Sbjct:   157 SSGSAVSVGAELVDFSLGIDTTGGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVG 216

Query:   204 WFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG 263
             WFA DP +L  VGH LL L     R  R +I ADD FEL  IP  + VQVV K+ E L G
Sbjct:   217 WFASDPSVLCQVGHALLNLSAVTHRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSG 276

Query:   264 RQVLKHENLGEYFDSKVPSLKGFHKTNGELKN----------VMRLIQRYEFKNNHNEWI 313
              +  KH N+G+Y  S VPSL  F + +G+ +N          VM  IQR+EFK NH EW 
Sbjct:   277 YKTPKHVNVGQYVASNVPSLAEFCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWW 336

Query:   314 ESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPP 373
             ++ K  L P  S ++   L+     I++   ++NEMR+ I SLLK+DGILV PT A PPP
Sbjct:   337 QTCKSFLGPRFSNDVVTALKSKNESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPP 396

Query:   374 KLGGKEMLS-EDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
             +L  K   S  ++ +R ++L  IAS+SGCCQVT+PLG +   P SVS +  +GGD+FLLD
Sbjct:   397 RLNTKRNKSLNEFLDRTYALSCIASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLD 456

Query:   433 TVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492
             T  ++YASLQ+QA +A+     ++T    +++E+ KEKGN AYK KQW KA++FYTEAIK
Sbjct:   457 TTLDVYASLQDQAKLASNLAPVSDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIK 516

Query:   493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             LNG NATYY NRAAA+LE   F QAE DCTKA+ +DKK
Sbjct:   517 LNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKK 554

GO:0004040 "amidase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2036029 AMI1 "AT1G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 196/421 (46%), Positives = 254/421 (60%)

Query:    33 DFGAFIEXXXXXXXXXXXXXXXXXXXTGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXX 92
             DFGAFIE                    GL+FA+ D+FD+EG VTGFG+P+W         
Sbjct:     6 DFGAFIEKVTISPTSTSSSPPSLQ---GLTFAIKDIFDVEGRVTGFGNPDWLRTHSAATS 62

Query:    93 XXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXX 152
                    L+E GAT +G T++DE AYSING N HY TP NP A  ++P            
Sbjct:    63 TAPVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVAVA 122

Query:   153 XDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 212
               LVDFS+G DT G VRVP+++CGI GFRPS+GAVS +G+ P++ S DTVGWFARD   L
Sbjct:   123 ARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDTATL 182

Query:   213 RHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG-RQVLKHEN 271
             + VG VLLQ        P Q+IIADDCF+L  +P D +VQ ++ S EK FG   V+K  N
Sbjct:   183 KRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVVKKVN 242

Query:   272 LGEYFDSKVPSLKGFHK-----TNGE--------LKNVMRLIQRYEFKNNHNEWIESVKP 318
             LGEY    VPSLK F       T  E        L + MRL+QR+EFK NH  WI SVKP
Sbjct:   243 LGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWISSVKP 302

Query:   319 ALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGK 378
                P IS  I E +  S+  I++C+S+++E+ +A+S+LL + G+LV PT   PPP L   
Sbjct:   303 EFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQAN 362

Query:   379 EMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMY 438
                 E +++RAFSLLSIA VSG CQV++PLG ++  P SVS +A++G D FLL  V ++ 
Sbjct:   363 VAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFLLSLVDSLA 422

Query:   439 A 439
             A
Sbjct:   423 A 423

GO:0004040 "amidase activity" evidence=ISS;IDA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IDA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IDA

GO:0043864 "indoleacetamide hydrolase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q60AB7 MCA0950 "Amidase family protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 109/350 (31%), Positives = 167/350 (47%)

Query:   101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSL 160
             ++ GA C+GKT  DE A+ + G N  Y TP NPAAP ++P               VDF+L
Sbjct:     7 LQAGAVCLGKTCADELAFGLTGENAFYGTPLNPAAPDRVPGGSSSGSAVAVAAGEVDFAL 66

Query:   161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL 220
             G DT G +R+P++ CGI G RPS+G VS  G+ P++   DTVG FAR+ + L+ V  +LL
Sbjct:    67 GTDTAGSIRLPASNCGIWGMRPSHGGVSVAGVNPLAPGFDTVGAFARNGETLQRVMSLLL 126

Query:   221 QLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKV 280
              +   +  S R  ++ +  F+  + PA R          K FG  VLK   L   F S+ 
Sbjct:   127 NVDPLSTVSGRLWLLQEG-FDAAE-PAVR----------KAFG-PVLKR--LAGSFPSRE 171

Query:   281 PSLKGFHKTNG-----ELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEIS 335
              SL+      G       + V + IQ  E  +    WIES +PAL             + 
Sbjct:   172 ISLRSIDGEAGVSGMDNWRQVFQPIQWAEIWSTLGTWIESARPALGERTRRNFELAKGLD 231

Query:   336 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG--GKEMLSEDYQNRAFSLL 393
               ++    + R   R+A++ +L  + ++  PT   P P  G  G +    DY  R  + +
Sbjct:   232 RRLLPAALARRERYRAALARVLGPEDVICFPTVHAPAPLKGSLGLDRTQGDYFPRVLARM 291

Query:   394 SIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 443
             +IA +    Q+++P    +  P  +S +A  G D FL+   Q + A L +
Sbjct:   292 AIAGICRLPQISLPAVEVEGAPVGLSLLAAEGNDAFLMAFAQGVAAVLDD 341

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1335 DET_1335 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 204 (76.9 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
 Identities = 41/109 (37%), Positives = 59/109 (54%)

Query:   100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
             L E GA  +GKT +DEFA   +  N  + T  NP   +++P                 FS
Sbjct:   111 LAEEGAVLLGKTNMDEFAMGSSTENSAFFTTHNPWNTAKVPGGSSGGSAACVAASEAVFS 170

Query:   160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
             LG DT G +R P++FC + G +PSYG VS  G++  ++SLD +G F +D
Sbjct:   171 LGSDTGGSIRQPASFCSVTGLKPSYGMVSRYGLVAFASSLDQIGPFTKD 219

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|CHY_1102 CHY_1102 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 212 (79.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
 Identities = 60/193 (31%), Positives = 89/193 (46%)

Query:   100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
             L E GA   GKT +DEFA   +  N  +    NP    ++P                  +
Sbjct:   111 LKEAGAVFTGKTNLDEFAMGSSTENSRFFPTRNPWDLERVPGGSSGGSAASVAAGEAVVA 170

Query:   160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHV- 215
             LG DT G +R P+AFCGI+G +P+YGAVS  G++  ++SLD +G FAR   D  +L +V 
Sbjct:   171 LGSDTGGSIRQPAAFCGIVGLKPTYGAVSRYGLVAFASSLDQIGPFARTVEDAALLLNVI 230

Query:   216 -GHVLLQLPFAAQRSPRQIIIADDCFELLKI--PADRVVQVVIKSTEKLFGRQVLKHENL 272
              GH       A    P  +   +   + LKI  P +  +  +    +K     +   E+L
Sbjct:   231 AGHDPKDSTSADIEYPDYLSFLNQDIKGLKIGLPKEYFIDGIDAGVKKAIDDAIKVLESL 290

Query:   273 GEYFDS-KVPSLK 284
             G  F+   +P  K
Sbjct:   291 GAVFEEVSLPHTK 303

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|Q936X3 atzE "Biuret hydrolase" [Pseudomonas sp. ADP (taxid:47660)]

 Score = 203 (76.5 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
 Identities = 47/144 (32%), Positives = 64/144 (44%)

Query:    60 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYS 119
             GL +AV +LFDIEG VT     +                 L   GA  +G   +DEFAY 
Sbjct:    68 GLPYAVKNLFDIEG-VTTLAGSKINRTLPPARADAVLVQRLKAAGAVLLGGLNMDEFAYG 126

Query:   120 INGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILG 179
                 N HY    NP    ++                V  SLG DT G +RVP++ CG+ G
Sbjct:   127 FTTENTHYGPTRNPHDTGRIAGGSSGGSGAAIAAGQVPLSLGSDTNGSIRVPASLCGVWG 186

Query:   180 FRPSYGAVSHMGIIPISTSLDTVG 203
              +P++G +S  G  P   S+D +G
Sbjct:   187 LKPTFGRLSRRGTYPFVHSIDHLG 210

GO:0018750 "biuret amidohydrolase activity" evidence=IDA

GO:0019381 "atrazine catabolic process" evidence=IDA

SGD|S000004907 HER2 "Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 212 (79.7 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
 Identities = 47/123 (38%), Positives = 64/123 (52%)

Query:   100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQ---MPXXXXXXXXXXXXXDLV 156
             L + G   +GKT +DEF     G +       NP  P +   +              DLV
Sbjct:    84 LKQAGVHILGKTNLDEFGMGSGGVHSIRGPVINPLYPHEDKKIMGGSSSGAAASVACDLV 143

Query:   157 DFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVG 216
             DF+LG DT G VR+P+ +  +LGF+PSYG +S  G+I  S SLDTVG  ++   +LR V 
Sbjct:   144 DFALGTDTGGSVRLPACYGSVLGFKPSYGRLSRFGVIAYSQSLDTVGILSKKINVLRKVF 203

Query:   217 HVL 219
             H L
Sbjct:   204 HTL 206

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA;IDA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA;IDA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IGI

CGD|CAL0003013 orf19.3956 [Candida albicans (taxid:5476)]

 Score = 218 (81.8 bits), Expect = 5.8e-15, P = 5.8e-15
 Identities = 41/120 (34%), Positives = 66/120 (55%)

Query:   100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
             L   G+  IGK+ +DEF       N +++  TNP   +++P              +  FS
Sbjct:    79 LSSNGSKLIGKSNLDEFGMGSANYNSYFNKVTNPYDNTKVPGGSSGGSAASVAGKMCSFS 138

Query:   160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 219
             +G DT G VR+P+++C + GF+P+YG +S  G+IP + +LDTVG    +  I++ V  VL
Sbjct:   139 IGTDTGGSVRLPASYCNVFGFKPTYGRISRWGVIPYAQTLDTVGIIGENVNIIKRVYDVL 198

GO:0005739 "mitochondrion" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LVH5	OE64C_ARATH	No assigned EC number	0.7148	0.9249	0.8998	yes	no
Q9MUK5	TOC64_PEA	No assigned EC number	0.6925	0.9249	0.8937	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	573
PLN02722	422	PLN02722, PLN02722, indole-3-acetamide amidohydrol	0.0
PRK08310	395	PRK08310, PRK08310, amidase; Provisional	1e-121
COG0154	475	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf	3e-64
pfam01425	431	pfam01425, Amidase, Amidase	8e-55
TIGR00132	460	TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a	4e-43
PRK09201	465	PRK09201, PRK09201, amidase; Provisional	5e-43
PRK07056	454	PRK07056, PRK07056, amidase; Provisional	1e-41
PRK06102	452	PRK06102, PRK06102, hypothetical protein; Provisio	3e-41
TIGR02715	452	TIGR02715, amido_AtzE, amidohydrolase, AtzE family	5e-40
PRK00012	459	PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf	9e-39
PRK08186	600	PRK08186, PRK08186, allophanate hydrolase; Provisi	7e-38
TIGR02713	561	TIGR02713, allophanate_hyd, allophanate hydrolase	4e-37
PRK05962	424	PRK05962, PRK05962, amidase; Validated	4e-33
PRK07488	472	PRK07488, PRK07488, indole acetimide hydrolase; Va	3e-32
PRK07139	439	PRK07139, PRK07139, amidase; Provisional	1e-27
PRK07235	502	PRK07235, PRK07235, amidase; Provisional	4e-24
PRK12470	462	PRK12470, PRK12470, amidase; Provisional	3e-23
PRK06170	490	PRK06170, PRK06170, amidase; Provisional	7e-22
PRK06169	466	PRK06169, PRK06169, putative amidase; Provisional	5e-21
PRK07486	484	PRK07486, PRK07486, amidase; Provisional	5e-21
PRK08137	497	PRK08137, PRK08137, amidase; Provisional	2e-19
PRK06707	536	PRK06707, PRK06707, amidase; Provisional	6e-19
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-18
PRK06828	491	PRK06828, PRK06828, amidase; Provisional	5e-18
PRK06061	483	PRK06061, PRK06061, amidase; Provisional	7e-17
PRK07487	469	PRK07487, PRK07487, amidase; Provisional	1e-15
PRK11910	615	PRK11910, PRK11910, amidase; Provisional	4e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-14
PRK07042	464	PRK07042, PRK07042, amidase; Provisional	1e-13
PRK07869	468	PRK07869, PRK07869, amidase; Provisional	9e-13
PRK06529	482	PRK06529, PRK06529, amidase; Provisional	3e-10
PRK06565	566	PRK06565, PRK06565, amidase; Validated	5e-09
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-08
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	5e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-07
PRK05962	424	PRK05962, PRK05962, amidase; Validated	1e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	7e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	0.004

>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase

 Score =  537 bits (1385), Expect = 0.0
 Identities = 239/421 (56%), Positives = 303/421 (71%), Gaps = 16/421 (3%)

Query: 33  DFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR 92
           D+GAF+EK  L     P       PL GL+FAV D+FD+EGYVTGFG+P+WARTHSAA+ 
Sbjct: 6   DYGAFMEKFVL----SPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATS 61

Query: 93  TSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVA 152
           T+  V  ++ GGATC+GKT++DE AYSING N HY TPTNP AP ++PGGSSSG+AVAV 
Sbjct: 62  TAPAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVG 121

Query: 153 ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 212
           A LVDFSLG DT G VRVP+++CGI GFRPS+GAVS +G+IP++ S DTVGWFARDP IL
Sbjct: 122 AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVIL 181

Query: 213 RHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGR-QVLKHEN 271
           + VGHVLLQ P      P QIIIA+DCF+L  IP DR+VQV++KS EKLFG   ++KH N
Sbjct: 182 KRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVKHVN 241

Query: 272 LGEYFDSKVPSLKGF-HKTNGE----------LKNVMRLIQRYEFKNNHNEWIESVKPAL 320
           LG+Y + KVPSLK F  K   E          L + MRL+QRYEFK NH EWI +VKP  
Sbjct: 242 LGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEF 301

Query: 321 DPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 380
            P IS  I E +  +E  I+ C+S++ E+R+A+++LL + G+LV PT   PPPKL     
Sbjct: 302 GPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPT 361

Query: 381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440
             E ++ RAFSLLSIA VSG CQV++PLG +D  P SVS +A+HG D FLL+ V+++Y +
Sbjct: 362 TLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGSDGFLLNLVESLYGT 421

Query: 441 L 441
           +
Sbjct: 422 I 422

Length = 422

>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional

 Score =  363 bits (934), Expect = e-121
 Identities = 153/412 (37%), Positives = 208/412 (50%), Gaps = 26/412 (6%)

Query: 34  FGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT 93
           F AFI K        PLP  A  PL GL FAV D+FD+ GYVTG G+P+W      A+RT
Sbjct: 7   FNAFIAKPDK-----PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRT 61

Query: 94  STVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA 153
           +  V  L+  GA  +GKT  DE A+S+NG N HY TP NPAAP ++PGGSSSG+A AVA 
Sbjct: 62  APAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAG 121

Query: 154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 213
            L DF+LG DT G VR P++FCG+ G RP++G +S  G++P++ S DTVGWFARD  +L 
Sbjct: 122 GLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLE 181

Query: 214 HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 273
            VG VLL          ++++I  D F LL       ++  +       G          
Sbjct: 182 RVGEVLLGDDAQEFPLTQRLLIPVDLFALLDPAVRAALEAALARLRPHLG---------- 231

Query: 274 EYFDSKVPSLKGFHKTNGELK---NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGE 330
                     K        L       R++Q  E    H  WI S  P L P ++     
Sbjct: 232 --------PAKPASVPPLSLDEWYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAA 283

Query: 331 MLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAF 390
             E++   +E  ++ R      +++LL  D +L+ PT     P  G      E Y+ RA 
Sbjct: 284 GAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERAL 343

Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442
            LL IA ++G  Q+++PL   D  P  +S I   G DR LL   Q + A+  
Sbjct: 344 RLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRSLLALAQTIAAARS 395

Length = 395

>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

 Score =  217 bits (555), Expect = 3e-64
 Identities = 112/392 (28%), Positives = 168/392 (42%), Gaps = 24/392 (6%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+  AV D  D  G  T  G    A         +TVV  L   GA  +GKT +DEF
Sbjct: 73  PLAGVPIAVKDNIDTAGLPTTAGSK--ALEDYVPPYDATVVERLRAAGAVILGKTNMDEF 130

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N  +    NP    ++PGGSS G+A AVAA LV  +LG DT G +R+P+AFCG
Sbjct: 131 AMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCG 190

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHV--GHVLLQLPFAAQRSPR 231
           ++G +P+YG VS  G++P+++SLD +G  AR   D  +L  V  G      P        
Sbjct: 191 LVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVP 250

Query: 232 QIIIADDCFELLKI--PADRVVQVVI-KSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHK 288
             +   D  + L+I  P +      +       F   V   E  G         L     
Sbjct: 251 PALAGKD-LKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLLSDDY 309

Query: 289 TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI--GEMLEISETVIE--NCKS 344
                       +RY  +   + + ++      P++   I  G  L +S    +    ++
Sbjct: 310 ALAAYYLARFDGERYGLRAA-DLYGKTRAEGFGPEVKRRIMLGTYL-LSAGYYDAYYRRA 367

Query: 345 IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSED----YQNRAFSLLSIASVSG 400
            +  +R A   L ++  +L+TPTT  P PK+G  E   +D    Y    F     A+++G
Sbjct: 368 QKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVF--TVPANLAG 425

Query: 401 CCQVTVPLGYYDKC-PTSVSFIARHGGDRFLL 431
              ++VP G+     P  +  I     D  LL
Sbjct: 426 LPAISVPAGFTADGLPVGLQLIGPAFDDATLL 457

Length = 475

>gnl|CDD|216494 pfam01425, Amidase, Amidase

 Score =  190 bits (486), Expect = 8e-55
 Identities = 108/404 (26%), Positives = 167/404 (41%), Gaps = 47/404 (11%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+  ++ D  D++G  T  G    A         +TVV  L   GA  +GKT +DEF
Sbjct: 46  PLHGVPISLKDNIDVKGVPTTAGSK--ALEGYPPPYDATVVERLRAAGAVILGKTNMDEF 103

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A      N  +    NP   S+ PGGSS G+A AVAA LV  ++G DT G +R+P+AFCG
Sbjct: 104 AMGSTTENSAFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCG 163

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---------------DPKILRHVGHVLLQ 221
           ++G +P+YG VS  G++P S+SLD VG  AR               DP         +  
Sbjct: 164 LVGLKPTYGRVSRYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPD 223

Query: 222 LPFAAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDS 278
                ++S + + I    +D +  L     R V+    + E L G +V   E        
Sbjct: 224 FAEPLKKSLKGLRIGVPREDFYFSLDPEVQRAVRKAAAALEAL-GHEV--VEVEPPSLKH 280

Query: 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISA--EIGEMLEISE 336
            +P             N+  L + Y                L  ++    E+G     + 
Sbjct: 281 ALPLYYIIAPAEA-SSNLSDLDELYP---------RIRDELLGDEVKRRIELGAYALSAG 330

Query: 337 TVIENCKS---IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLL 393
                      +R  +R   + L ++  +L++PTT  P P+LG     ++        L 
Sbjct: 331 YSGAYYLKAQKVRRLLRREFAGLFEELDVLLSPTTPTPAPRLG---EAADSPTVLYNLLD 387

Query: 394 SI-----ASVSGCCQVTVPLGY-YDKCPTSVSFIARHGGDRFLL 431
                  A+++G   +++P G+  D  P  +  I   G D  LL
Sbjct: 388 FTANTVPANLAGLPAISLPAGFSEDGLPVGLQIIGPPGDDETLL 431

Length = 431

>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit

 Score =  159 bits (405), Expect = 4e-43
 Identities = 108/419 (25%), Positives = 178/419 (42%), Gaps = 64/419 (15%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
           PL G+  AV D    +G VT           + AS+          +TV+  L + GA  
Sbjct: 55  PLAGIPIAVKDNISTKGIVT-----------TCASKILENYIPPYDATVIERLKQAGALI 103

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           IGKT +DEFA   +     +    NP    ++PGGSS G+A AVAADL  FSLG DT G 
Sbjct: 104 IGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGS 163

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLP 223
           +R P++FCG++GF+P+YG VS  G++  ++SLD +G FAR  + +  +  V+     +  
Sbjct: 164 IRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDS 223

Query: 224 FAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLK-HENLGEYFDSKVPS 282
            +A+    +       FE LK     +   V+K   +   ++V +  EN  E  +     
Sbjct: 224 TSAKVPDPEF------FEELKKDLKGLKVGVVKEFSEEMDKEVQEKFENALEVLEELGAE 277

Query: 283 LKGFHKTNGELKNVM---RLIQRYEFKNNH---------------NEWIESVKPALDPDI 324
           +         +K  +    +I   E  +N                N   E          
Sbjct: 278 IVEVSF--PHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKTRAEGF 335

Query: 325 SAE------IGEML---EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKL 375
             E      +G         +      + +R  +      L ++  ++V+PT    P K+
Sbjct: 336 GEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKI 395

Query: 376 GGKEMLSEDYQNRAFSLLSI-ASVSGCCQVTVPLGYYDK-CPTSVSFIARHGGDRFLLD 432
           G  E L +  +     +L++ A+++G   ++VP G  +K  P  +  I +   D+ LL 
Sbjct: 396 G--EKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQ 452

In many species, Gln--tRNA ligase is missing. tRNA(Gln) is misacylated with Glu after which a heterotrimeric amidotransferase converts Glu to Gln. This model represents the amidase chain of that heterotrimer, encoded by the gatA gene. In the Archaea, Asn--tRNA ligase is also missing. This amidase subunit may also function in the conversion of Asp-tRNA(Asn) to Asn-tRNA(Asn), presumably with a different recognition unit to replace gatB. Both Methanococcus jannaschii and Methanobacterium thermoautotrophicum have both authentic gatB and a gatB-related gene, but only one gene like gatA. It has been shown that gatA can be expressed only when gatC is also expressed. In most species expressing the amidotransferase, the gatC ortholog is about 90 residues in length, but in Mycoplasma genitalium and Mycoplasma pneumoniae the gatC equivalent is as the C-terminal domain of a much longer protein. Not surprisingly, the Mycoplasmas also represent the most atypical lineage of gatA orthology. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species [Protein synthesis, tRNA aminoacylation]. Length = 460

>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional

 Score =  159 bits (405), Expect = 5e-43
 Identities = 77/184 (41%), Positives = 99/184 (53%), Gaps = 5/184 (2%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +   PL G+ FAV +LFD+ G  T  G  +  R    A+R +T V  L   GA  +G   
Sbjct: 67  EPLGPLAGVPFAVKNLFDVAGLTTLAG-SKINRDRPPATRDATAVRRLEAAGAVLVGALN 125

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           +DE+AY     N HY    NP   +++ GGSS G+A AVAA LV F+LG DT G +RVP+
Sbjct: 126 MDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPA 185

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLPFAAQR 228
           + CGI G +P+YG +S  G  P   SLD +G FAR    L  V  VL     Q PF A R
Sbjct: 186 SLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQADR 245

Query: 229 SPRQ 232
               
Sbjct: 246 PAEP 249

Length = 465

>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional

 Score =  155 bits (394), Expect = 1e-41
 Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 7/160 (4%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSA-ASRTSTVVSTLVEGGATCIGKT 111
            AP PL G+  +V DLFD+ G VT  G        +  A+  +  V+ L   GA  IG+T
Sbjct: 67  AAPSPLAGIPVSVKDLFDVAGQVTRAGSR--VLADAPPAAADAPAVARLRRAGAVLIGRT 124

Query: 112 VVDEFAYSINGTNKHYDTPTNPAA----PSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
            + EFA+S  G N HY TP NP        ++PGGSSSGAAV+VA  +   +LG DT G 
Sbjct: 125 NMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAAALGTDTGGS 184

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           +R+P+A CG+ GF+P+   V   G +P+ST+LD++G  AR
Sbjct: 185 IRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLAR 224

Length = 454

>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional

 Score =  154 bits (391), Expect = 3e-41
 Identities = 114/404 (28%), Positives = 171/404 (42%), Gaps = 60/404 (14%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
            L G+  A  DLFD+ G VT  G    A   + ASR + VV+ L   G   IG+T + EF
Sbjct: 69  LLDGIPIAWKDLFDVAGSVTTAGSVVLANA-APASRDAAVVALLARAGMVSIGRTNMSEF 127

Query: 117 AYSINGTNKHYDTPTNPAAPSQ--MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
           A+S  G N HY TP NP +     +PGGSSSG+AVAVAA LV  ++G DT G VR+P+AF
Sbjct: 128 AFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAF 187

Query: 175 CGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR--------DPKILRHVGHVLLQLPFAA 226
            G++G++ + G  S  G+ P++ SLD++G   R        D  +       +++ P A 
Sbjct: 188 NGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAG 247

Query: 227 QR--SPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLK 284
            R   P  ++   D  E    P   V      + E+L     L             P+ +
Sbjct: 248 LRLVVPETVV--FDDAE----PG--VRAAFEAAVERLQAAGALVER-------QAFPAFQ 292

Query: 285 GFHKTNGELKNVMRLIQRY------EFKNNHNEWIESVKPA-LDPDISA--EIGEMLEIS 335
                      ++ LI R+      E    H E ++    A +DP +     +G  +  S
Sbjct: 293 E----------ILDLIARHGWLVTAEAFALHQERLDGPDAARMDPRVVKRTRLGRKITAS 342

Query: 336 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQ------NRA 389
           + +       R  + + ++  L    +L TPT A+  P L     L  D         + 
Sbjct: 343 DYI--ALLEARERLIAQVTREL-GGALLATPTVAHVAPPLAP---LEADDDLFFATNLKT 396

Query: 390 FSLLSIASVSGCCQVTVPLGYYDK-CPTSVSFIARHGGDRFLLD 432
                  +    C V++P G      P  +   A  G D  LL 
Sbjct: 397 LRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLR 440

Length = 452

>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family

 Score =  151 bits (382), Expect = 5e-40
 Identities = 70/155 (45%), Positives = 91/155 (58%), Gaps = 1/155 (0%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
               PL G+ FAV +LFD+ G  T  G  +  R  + A R +T+V  L   GA  +G   
Sbjct: 60  SPLGPLAGVPFAVKNLFDVAGLTTLAG-AKINRDLAPAKRDATLVQRLSAAGAVLVGALN 118

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           +DEFAY     N HY    NP   +++ GGSS G+A AVAA LV FSLG DT G +RVP+
Sbjct: 119 MDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPA 178

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           + CG+ G +P+YG +S  G+ P   SLD VG FAR
Sbjct: 179 SLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFAR 213

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease [Unknown function, Enzymes of unknown specificity]. Length = 452

>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

 Score =  147 bits (374), Expect = 9e-39
 Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
           PL G+  A+ D    +G  T           + AS+          +TVV  L   GA  
Sbjct: 55  PLAGIPIAIKDNICTKGIRT-----------TCASKILENYVPPYDATVVEKLKAAGAVI 103

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           +GKT +DEFA   +  N  +    NP    ++PGGSS G+A AVAA L   +LG DT G 
Sbjct: 104 LGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGS 163

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +R P+AFCG++G +P+YG VS  G+I  ++SLD +G FAR 
Sbjct: 164 IRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFART 204

Length = 459

>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional

 Score =  147 bits (373), Expect = 7e-38
 Identities = 74/181 (40%), Positives = 95/181 (52%), Gaps = 8/181 (4%)

Query: 33  DFGAFIEKL---QLLPPPQPLPPKAPH--PLTGLSFAVSDLFDIEGYVTGFGHPEWARTH 87
           D   +I       LL     L  + P   PL G+ FAV D  D+ G  T    P +A T 
Sbjct: 39  DPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAACPAFAYT- 97

Query: 88  SAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147
               R +TVV+ L   GA  IGKT +D+FA  + GT   Y    N   P  + GGSSSG+
Sbjct: 98  --PERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGS 155

Query: 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           AVAVA  LV F+LG DT G  RVP+AF  I+G +P+ G +S  G++P   +LD V  FA 
Sbjct: 156 AVAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFAL 215

Query: 208 D 208
            
Sbjct: 216 T 216

Length = 600

>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase

 Score =  144 bits (366), Expect = 4e-37
 Identities = 76/211 (36%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+ FAV D  D+ G  T    P +A T       +TVV+ L   GA  +GKT +D+F
Sbjct: 31  PLYGVPFAVKDNIDVAGLPTTAACPAFAYT---PEEDATVVALLRAAGAIVVGKTNLDQF 87

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A  + GT   Y    N   P+ + GGSSSG+AVAVA  LV F+LG DT G  RVP+A   
Sbjct: 88  ATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNN 147

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARD----PKILRHVGHVLLQLPFAAQRSPRQ 232
           I+G +P+ G VS  G++P   SLD V  FA       ++LR       + P++       
Sbjct: 148 IVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPAAA 207

Query: 233 IIIADDCFELLKIPADRVVQVVIKSTEKLFG 263
                    L + P    V V   +  + FG
Sbjct: 208 ---------LRRFPPPPRVGVPRAAQLEFFG 229

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase [Central intermediary metabolism, Nitrogen metabolism]. Length = 561

>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated

 Score =  131 bits (330), Expect = 4e-33
 Identities = 63/151 (41%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G   ++ DLFD+ G  T  G     R    A   + +V  L   GA  IGKT + EF
Sbjct: 45  PLDGRIVSIKDLFDVAGEPTLAGSV-IRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEF 103

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A++  G N HY  P N   P+++PGGSSSGAAV+VA    + ++G DT G VR+P+A  G
Sbjct: 104 AFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNG 163

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           ++GF+P+   +   G  P+S SLD++G  AR
Sbjct: 164 LVGFKPTARRIPLEGAFPLSPSLDSIGPLAR 194

Length = 424

>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated

 Score =  129 bits (326), Expect = 3e-32
 Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 54  APHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVV 113
           A   L G+   + D  +  G  T  G P        A   + VV  L++ GA  +GK  +
Sbjct: 70  AALLLAGVPIVIKDNINTAGMPTTAGTPALLG-FVPA-TDAPVVQRLLDAGAVPLGKANM 127

Query: 114 DEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSA 173
            E A+ I   N  +    NP  P+++ GGSS G A AVAA L    LG DT G VR+P+A
Sbjct: 128 HELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAA 187

Query: 174 FCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
            CG++G RP+ G  S  G++PIS + DTVG  AR
Sbjct: 188 LCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIAR 221

Length = 472

>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional

 Score =  115 bits (290), Expect = 1e-27
 Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 4/128 (3%)

Query: 91  SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVA 150
           S  +TVV  L+  GA  + K   DE      G    +    NP   S++ GGSSSG+A A
Sbjct: 68  SYNATVVQKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSA-A 126

Query: 151 VAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR--- 207
                + F++G DT   VR+P++F G +GF+PSYGA+S  G+   ++SLDTV +F     
Sbjct: 127 TFNKNISFAIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVN 186

Query: 208 DPKILRHV 215
           D  IL  V
Sbjct: 187 DAIILSKV 194

Length = 439

>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional

 Score =  105 bits (265), Expect = 4e-24
 Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 2/118 (1%)

Query: 91  SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT-NPAAPSQMPGGSSSGAAV 149
           S  +TVV+ L++ GAT +GK   ++  +S  G++     P  NP  P    GGSSSG+A 
Sbjct: 119 SFDATVVTRLLDAGATIVGKATCEDLCFS-GGSHTSDPGPVHNPRDPGYSAGGSSSGSAA 177

Query: 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
            VAA  VD ++G D  G +R+PSA+CGI G +P++G V + G  PI  ++D +G    
Sbjct: 178 LVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTA 235

Length = 502

>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional

 Score =  102 bits (256), Expect = 3e-23
 Identities = 105/414 (25%), Positives = 161/414 (38%), Gaps = 60/414 (14%)

Query: 55  PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVD 114
             PL G+  A+ D  D+ G VT +G    A    AA+  + VV  L   GA  IGKT V 
Sbjct: 70  RLPLLGVPIAIKDDVDVAGEVTTYGS---AGHGPAATSDAEVVRRLRAAGAVIIGKTNVP 126

Query: 115 EFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
           E        +  +    NP  P++ PGGSS G+A AVAA L   +LG D  G +R+PS +
Sbjct: 127 ELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTW 186

Query: 175 CGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHVGHVL--LQLPF--AAQ 227
           CG+ G +P    +S          L   G  AR   D  +L      +   +  F  AA 
Sbjct: 187 CGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGEFVAAAA 246

Query: 228 RSPRQIIIADDCFELLKIPADRVVQV------VIKSTEKL---FGRQVLKHENLGEYFDS 278
           R P ++ IA       ++P    V+        +     L    G  V+  +   +Y   
Sbjct: 247 REPGRLRIALS----TRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVVRDP--DYPA- 299

Query: 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETV 338
              +   +      L    R I        H + +E+   A+     A +G     S+  
Sbjct: 300 --ATYANY------LPRFFRGISDDADAQAHPDRLEARTRAI-----ARLGSF--FSDRR 344

Query: 339 IENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAF--SLLSIA 396
           +   ++    + + I S+  D  ++VTP TA  P ++G        YQ R    +LL + 
Sbjct: 345 MAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIGA-------YQRRGAVSTLLLVV 397

Query: 397 SVSGCCQV---------TVPLGY-YDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440
                 QV          VP  +  D  P SV  + R   +  LL     + ++
Sbjct: 398 QRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA 451

Length = 462

>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional

 Score = 98.6 bits (246), Expect = 7e-22
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 2/138 (1%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+   V + F++ G  T +G P+  R +  A   +  V+ L   GA  +GKT V   
Sbjct: 75  PLLGIPVTVKESFNVAGLPTTWGFPDL-RDYVPA-EDAVAVARLKAAGAVILGKTNVPLG 132

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
                  N+ Y T  NP   ++ PGGSS G+A A+AA     S+G D  G +RVP+ +CG
Sbjct: 133 LQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCG 192

Query: 177 ILGFRPSYGAVSHMGIIP 194
           +   +P+ G V   G IP
Sbjct: 193 VYAHKPTLGLVPLRGHIP 210

Length = 490

>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 56/176 (31%), Positives = 80/176 (45%), Gaps = 24/176 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA---SRTSTVVSTLVEGGATCIGKTVV 113
            L G+  ++ D+F   G+ T  G    +R   A       +  V+ L E GA  +GKT  
Sbjct: 71  LLDGVPVSIKDIFLTRGWPTLRG----SRAIDADGPWDVDAPAVARLREAGAVLLGKTTT 126

Query: 114 DEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSA 173
            EF +     +  Y    NP       GGSS GAA AVA  +   S+G D  G VR+P++
Sbjct: 127 PEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPAS 186

Query: 174 FCGILGFRPSYGAV-----SHMGII----PISTS-------LDTVGWF-ARDPKIL 212
           FCG  GF+P++G V     S  G +    P++ +       LD +    ARD   L
Sbjct: 187 FCGTFGFKPTFGRVPLYPASPFGTLAHVGPMTRTVADAALLLDVIARPDARDWSAL 242

Length = 466

>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 62/194 (31%), Positives = 81/194 (41%), Gaps = 21/194 (10%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
            L G+  A  DL   +G  T  G P +A         + VV  +   GA  IGKT   EF
Sbjct: 77  WLHGMPQAPKDLAPTKGIRTTLGSPIFA--DQVPQEDAIVVERMRAAGAIFIGKTNTPEF 134

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
               +  N  Y    NP  PS+  GGSS GAA A+A  ++  + G D +G +R P+AF  
Sbjct: 135 GLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNN 194

Query: 177 ILGFRPSYGAVSH----------------MG--IIPISTSLDT-VGWFARDPKILRHVGH 217
           + GFRPS G V H                MG  +  ++  L    G+  RDP  L     
Sbjct: 195 VYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPRDPLSLAEDPA 254

Query: 218 VLLQLPFAAQRSPR 231
              Q   A  R  R
Sbjct: 255 RFAQPLEADLRGKR 268

Length = 484

>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional

 Score = 91.4 bits (227), Expect = 2e-19
 Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 57  PLTGLSFAVSDLFD-IEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDE 115
           PL G+   + D  D  +   T  G    A   +  +R + +V+ L + GA  +GK  + E
Sbjct: 72  PLHGIPVLLKDNIDAADPMPTTAG--SLALAGNRPTRDAFLVARLRDAGAVILGKANLSE 129

Query: 116 FA-----YSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRV 170
           +A      S +G +       NP A  + P GSSSG+  AVAA L   ++G +T G +  
Sbjct: 130 WANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDGSITC 189

Query: 171 PSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           P+A  G++G +P+ G VS  GI+PIS S DT G   R
Sbjct: 190 PAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTR 226

Length = 497

>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional

 Score = 90.0 bits (223), Expect = 6e-19
 Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 8/128 (6%)

Query: 90  ASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGT------NKHYDTPTNPAAPSQM-PGG 142
           A + +T+V  L E GA  +GK  + E+A  ++ T       K      NP  P +    G
Sbjct: 168 ADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQN-LNPYGPIKFDTSG 226

Query: 143 SSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV 202
           SSSG+A  VAAD    ++G +T G +  P+A   ++G RPS G VS  GIIP++ +LDT 
Sbjct: 227 SSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTA 286

Query: 203 GWFARDPK 210
           G  AR  K
Sbjct: 287 GPMARTVK 294

Length = 536

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEAD 520
            +AE  K  GN  +K   + +AI  Y +A++L+ +NA  Y N A AYL+ G  + +A  D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 521 CTKAINLDK 529
             KA+ LD 
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional

 Score = 86.8 bits (215), Expect = 5e-18
 Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 84  ARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFA----------YSINGTNKHYDTPTNP 133
           A     +S  + +V+ L E GA  +GK  + E A          YS  G       P   
Sbjct: 105 ALEQHISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTI--NPYGT 162

Query: 134 AAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII 193
                  GGSS+G+A+AVAA+    S+G +T G +  P+    ++G +P+ G +S  GII
Sbjct: 163 GEDDMFVGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGII 222

Query: 194 PISTSLDTVGWFAR---DPKIL 212
           P + S DT G FAR   D  IL
Sbjct: 223 PFTYSQDTAGPFARTVTDAAIL 244

Length = 491

>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional

 Score = 83.2 bits (206), Expect = 7e-17
 Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+  AV D  D+ G  T FG          A+  S VV  L   GA  +GKT   E 
Sbjct: 81  PLLGVPIAVKDDVDVAGVPTAFGTAG---EVPPATADSEVVRRLRAAGAVIVGKTNTCEL 137

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
                 +   +    NP +    PGGSS G+A AVAA LV  ++G D  G VR+P+A+  
Sbjct: 138 GQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTH 197

Query: 177 ILGFRPSYGAVS 188
           ++G +P  G +S
Sbjct: 198 LVGIKPQRGRIS 209

Length = 483

>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 60/184 (32%), Positives = 75/184 (40%), Gaps = 17/184 (9%)

Query: 55  PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVD 114
           P PL G+   V    D  G+ T  G          A   S VV  L + GA  IG+T   
Sbjct: 70  PGPLAGVPVTVKVNVDQAGFATTNGVRLQK--DLIAPADSPVVDNLRKAGAVIIGRTNTP 127

Query: 115 EFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
            F+Y     N  +    NP  PS  PGGSS GAA AVAA +   + G D  G +R P+  
Sbjct: 128 AFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYA 187

Query: 175 CGILGFRPSYGAV-------SHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ 227
           CG+ G RP+ G V           I     S        + P + R V  + L L   A 
Sbjct: 188 CGVHGLRPTLGRVPAYNASSPERPIGAQLMS-------VQGP-LARTVADLRLALAAMAA 239

Query: 228 RSPR 231
             PR
Sbjct: 240 PDPR 243

Length = 469

>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional

 Score = 75.1 bits (184), Expect = 4e-14
 Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 94  STVVSTLVEGGATCIGKTVVDEFAYSI-----NGTNKHYDTPTNPAAPSQMPGGSSSGAA 148
           +T+V  L   GA  +GKT + E+A  +     NG +       NP + +  P GSSSG+A
Sbjct: 264 ATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSA 323

Query: 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
            A  +D    ++G +T G +  P++    +G++PS G V++ GIIP+S+  DT G   R
Sbjct: 324 TAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTR 382

Length = 615

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query: 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524
           E     GN  YK   + +A+ +Y +A++L+ +NA  Y N AAAY + G + +A  D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 525 INLDKK 530
           + LD  
Sbjct: 61  LELDPD 66

Length = 100

>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 34/88 (38%), Positives = 48/88 (54%)

Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFS 159
           L E GA  + KT + ++    +G +  +    NP    Q PGGSS+GA  A AA      
Sbjct: 112 LREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLH 171

Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAV 187
           LG D  G VR+P+ +CGI+G +PS G +
Sbjct: 172 LGTDIGGSVRLPAGWCGIVGLKPSLGRI 199

Length = 464

>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional

 Score = 70.0 bits (172), Expect = 9e-13
 Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 27/193 (13%)

Query: 46  PPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGA 105
             +P         +G+   + D  D+ G  T  G   W      A   S      +  G 
Sbjct: 64  AARPGSQGGF--FSGVPTFIKDNVDVAGLPTMHGSDAWTPR--PAKADSDFARQFLATGL 119

Query: 106 TCIGKTVVDEFAYSINGTNKHYD-TPT-NPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
             +GKT + EF +S   + +H    P  NP       G SS G+A  VAA +V  +   D
Sbjct: 120 ISLGKTQLPEFGFS--ASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHAND 177

Query: 164 TVGGVRVPSAFCGILGFRPSYG------AVSHMGIIPIS------TSLDTVGWFA----- 206
             G +R+P+A CG++G +PS G       +  + +  ++      T  DT  ++      
Sbjct: 178 GGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERY 237

Query: 207 -RDPKILRHVGHV 218
            R+PK L  +G V
Sbjct: 238 YRNPK-LPPIGDV 249

Length = 468

>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional

 Score = 62.1 bits (151), Expect = 3e-10
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 87  HSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTN-PAAPSQMPGGSSS 145
           +  A++T   V  L + G   +G++   EF +  N ++     P N P   S+  GGSS 
Sbjct: 91  NYQATKTDLYVKRLEDLGFIILGRSNTPEFGFK-NISDSSLHGPVNLPFDNSRNAGGSSG 149

Query: 146 GAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV 187
           GAA  V++ +V  +   D  G +R+P++F G++G +PS G +
Sbjct: 150 GAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRI 191

Length = 482

>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 15/159 (9%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+ +   D + ++G     G P +      A R +  +  L   GA C+GKT +   
Sbjct: 75  PLDGIPYTAKDSYLVKGLTAASGSPAFK--DLVAQRDAFTIERLRAAGAICLGKTNMPPM 132

Query: 117 AYSINGTNK--HY---DTPTNPA---APSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGV 168
           A   NG  +   Y   ++P N A   AP     GSS+GA  A AA    F L  +T    
Sbjct: 133 A---NGGMQRGVYGRAESPYNAAYLTAP--FASGSSNGAGTATAASFSAFGLAEETWSSG 187

Query: 169 RVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           R P++  G+  + PS G +S  G  P++ ++D V  +AR
Sbjct: 188 RGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYAR 226

Length = 566

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
              E  +I   S  + +   +K+ A   KEKGN+AY++K + KAI  Y++AI+    +  
Sbjct: 103 PADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-PDPV 161

Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLD 528
           YYSNRAA +   G + +   D T A+ LD
Sbjct: 162 YYSNRAACHNALGDWEKVVEDTTAALELD 190

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A+  ++K  +A+ D  +  A+  YT+AI L+ NNA  Y++RA A ++ G+F +A AD  K
Sbjct: 2   AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61

Query: 524 AINLD 528
           AI LD
Sbjct: 62  AIELD 66

Length = 356

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           YK  ++ +A+  Y +A++L+ +NA  Y N   AY + G + +A     KA+ LD  
Sbjct: 45  YKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 309 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 368
           H +W+  +   +D  +   +   +++           R  +  A+   L    +   P T
Sbjct: 287 HADWLADLDANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPAT 346

Query: 369 AYPPPKLGGKEMLSEDYQNRAFSLL----SIASVSGCCQVTVPLGYYDKCPTSVSFIARH 424
               P +       E+Y +R  +LL     +A+    C +T+P+      P  +   AR+
Sbjct: 347 PIVAPTIASVSEDEEEY-DRVENLLLRNTQVANQFDLCSITLPMPGM-ALPAGLMLTARN 404

Query: 425 GGDRFLLDTVQNMYASLQE 443
           G DR LL    ++   L+ 
Sbjct: 405 GSDRRLLAAAASVEKLLEH 423

Length = 424

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 11/60 (18%), Positives = 19/60 (31%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                A +   + +A++    A+      A        A L  G   +A A    A+  D
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Length = 65

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQ 516
           A           +   + +A+    +A++L       +   A   +N A  YL  G + +
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 517 AEADCTKAINLDKK 530
           A     KA+ L + 
Sbjct: 65  ALEYLEKALALREA 78

Length = 78

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 486 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
            Y +A++L+ NNA  Y N A   L  G + +A  
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	573
COG0154	475	GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su	100.0
PLN02722	422	indole-3-acetamide amidohydrolase	100.0
PRK09201	465	amidase; Provisional	100.0
TIGR02715	452	amido_AtzE amidohydrolase, AtzE family. Members of	100.0
PRK05962	424	amidase; Validated	100.0
PRK07487	469	amidase; Provisional	100.0
PRK06102	452	hypothetical protein; Provisional	100.0
PRK06169	466	putative amidase; Provisional	100.0
PRK08310	395	amidase; Provisional	100.0
PRK07056	454	amidase; Provisional	100.0
PRK07486	484	amidase; Provisional	100.0
PRK07042	464	amidase; Provisional	100.0
PRK06170	490	amidase; Provisional	100.0
PRK07235	502	amidase; Provisional	100.0
PRK12470	462	amidase; Provisional	100.0
PRK07488	472	indole acetimide hydrolase; Validated	100.0
PRK06061	483	amidase; Provisional	100.0
TIGR00132	460	gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	100.0
PRK06529	482	amidase; Provisional	100.0
PRK00012	459	gatA aspartyl/glutamyl-tRNA amidotransferase subun	100.0
PRK07869	468	amidase; Provisional	100.0
PRK08186	600	allophanate hydrolase; Provisional	100.0
PRK08137	497	amidase; Provisional	100.0
PRK07139	439	amidase; Provisional	100.0
TIGR02713	561	allophanate_hyd allophanate hydrolase. Allophanate	100.0
PRK06828	491	amidase; Provisional	100.0
PF01425	441	Amidase: Amidase; InterPro: IPR000120 Amidase sign	100.0
PRK11910	615	amidase; Provisional	100.0
PRK06707	536	amidase; Provisional	100.0
PRK06565	566	amidase; Validated	100.0
KOG1211	506	consensus Amidases [Translation, ribosomal structu	100.0
KOG1212	560	consensus Amidases [Translation, ribosomal structu	100.0
KOG0553	304	consensus TPR repeat-containing protein [General f	99.71
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.58
KOG4234	271	consensus TPR repeat-containing protein [General f	99.46
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.43
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.36
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.32
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.3
PRK15359	144	type III secretion system chaperone protein SscB;	99.28
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.22
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.22
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.18
PRK11189	296	lipoprotein NlpI; Provisional	99.16
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.15
PRK15359	144	type III secretion system chaperone protein SscB;	99.12
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.1
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.1
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.09
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.08
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.06
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.02
KOG0553	304	consensus TPR repeat-containing protein [General f	99.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.99
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.99
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.97
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.94
PRK11189	296	lipoprotein NlpI; Provisional	98.92
KOG1125	579	consensus TPR repeat-containing protein [General f	98.91
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.91
KOG4555	175	consensus TPR repeat-containing protein [Function	98.9
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.87
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.85
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.85
KOG1126	638	consensus DNA-binding cell division cycle control	98.83
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.83
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.81
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.79
PF13371	73	TPR_9: Tetratricopeptide repeat	98.78
PRK12370	553	invasion protein regulator; Provisional	98.78
KOG1126	638	consensus DNA-binding cell division cycle control	98.78
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.75
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.75
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.74
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.74
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.73
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.72
PRK12370	553	invasion protein regulator; Provisional	98.72
PLN02789	320	farnesyltranstransferase	98.71
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.68
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.64
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.64
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.63
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.63
PRK15331	165	chaperone protein SicA; Provisional	98.62
KOG4234	271	consensus TPR repeat-containing protein [General f	98.62
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.61
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.59
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.58
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.54
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.52
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.52
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.51
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.48
PLN02789	320	farnesyltranstransferase	98.47
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.46
PRK10803	263	tol-pal system protein YbgF; Provisional	98.45
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.45
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.44
KOG1125	579	consensus TPR repeat-containing protein [General f	98.37
PF13512	142	TPR_18: Tetratricopeptide repeat	98.37
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.37
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.35
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.35
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.31
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.31
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.31
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.3
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.3
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.29
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.29
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.27
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.26
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.24
KOG2076	895	consensus RNA polymerase III transcription factor	98.24
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.22
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.22
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.2
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.19
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.18
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.18
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.16
PF13431	34	TPR_17: Tetratricopeptide repeat	98.16
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.16
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.15
PF12688	120	TPR_5: Tetratrico peptide repeat	98.15
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.11
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.11
PRK14574	822	hmsH outer membrane protein; Provisional	98.09
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.07
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.07
KOG2076	895	consensus RNA polymerase III transcription factor	98.07
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.06
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.06
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.04
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.02
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.01
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.99
KOG1310	758	consensus WD40 repeat protein [General function pr	97.97
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.97
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.94
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.92
PRK15331	165	chaperone protein SicA; Provisional	97.92
PRK10803	263	tol-pal system protein YbgF; Provisional	97.92
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.91
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.85
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.85
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.83
PRK14574	822	hmsH outer membrane protein; Provisional	97.81
PF13428	44	TPR_14: Tetratricopeptide repeat	97.81
PRK11906	458	transcriptional regulator; Provisional	97.78
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.77
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.76
KOG1129	478	consensus TPR repeat-containing protein [General f	97.74
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.71
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.71
PF12688	120	TPR_5: Tetratrico peptide repeat	97.71
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.69
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.68
PF13512	142	TPR_18: Tetratricopeptide repeat	97.67
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.67
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.67
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.65
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.65
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.65
KOG1129	478	consensus TPR repeat-containing protein [General f	97.64
KOG2003	840	consensus TPR repeat-containing protein [General f	97.62
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.62
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.61
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.6
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.58
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.56
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.55
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.5
PF13371	73	TPR_9: Tetratricopeptide repeat	97.49
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.48
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.44
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.44
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.43
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.42
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.41
PRK11906	458	transcriptional regulator; Provisional	97.4
PF13428	44	TPR_14: Tetratricopeptide repeat	97.38
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.36
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.34
KOG2003	840	consensus TPR repeat-containing protein [General f	97.31
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.3
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.29
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.28
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.27
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.26
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.19
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.17
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.14
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.13
KOG4555	175	consensus TPR repeat-containing protein [Function	97.13
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.13
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.1
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.09
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.08
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.07
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.07
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.03
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.02
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.01
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.01
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.0
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.96
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.9
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.9
PRK10941	269	hypothetical protein; Provisional	96.8
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.76
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.76
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	96.75
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.73
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.7
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.67
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.66
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.64
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.63
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.6
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.56
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.54
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.49
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.44
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.44
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.42
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.29
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.28
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.22
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.18
KOG1586	288	consensus Protein required for fusion of vesicles	96.15
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.12
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.11
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.1
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.97
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.84
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.84
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.81
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.77
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.72
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.7
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.61
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.51
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	95.4
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.35
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.18
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.17
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.13
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.1
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.09
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.07
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.04
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.99
PF13431	34	TPR_17: Tetratricopeptide repeat	94.94
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.73
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.69
KOG1585	308	consensus Protein required for fusion of vesicles	94.64
KOG3364	149	consensus Membrane protein involved in organellar	94.59
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.57
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.5
COG2912	269	Uncharacterized conserved protein [Function unknow	94.46
KOG0495	913	consensus HAT repeat protein [RNA processing and m	94.42
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.42
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.41
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.25
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.14
PLN03218	1060	maturation of RBCL 1; Provisional	94.07
KOG1585	308	consensus Protein required for fusion of vesicles	93.72
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	93.71
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	93.5
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.33
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.29
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.27
PRK04841	903	transcriptional regulator MalT; Provisional	93.25
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.22
PLN03077	857	Protein ECB2; Provisional	93.18
PLN03218	1060	maturation of RBCL 1; Provisional	93.17
KOG1586	288	consensus Protein required for fusion of vesicles	93.1
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.05
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.97
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.81
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.49
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.42
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.06
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.05
PRK04841	903	transcriptional regulator MalT; Provisional	92.03
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	91.71
KOG2471	696	consensus TPR repeat-containing protein [General f	91.6
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	91.55
COG4455	273	ImpE Protein of avirulence locus involved in tempe	90.95
KOG1310	758	consensus WD40 repeat protein [General function pr	90.88
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.72
KOG4507	886	consensus Uncharacterized conserved protein, conta	90.68
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.58
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	90.44
PLN03077	857	Protein ECB2; Provisional	90.41
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.83
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.72
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.68
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.51
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	89.19
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.04
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.68
KOG1915	677	consensus Cell cycle control protein (crooked neck	88.48
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	88.46
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	88.29
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.07
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	87.89
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.68
PRK10941	269	hypothetical protein; Provisional	87.68
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	87.6
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	85.67
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	85.37
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	84.94
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	83.88
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	83.85
KOG2047	835	consensus mRNA splicing factor [RNA processing and	83.54
PF04212	69	MIT: MIT (microtubule interacting and transport) d	83.3
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	83.13
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	82.67
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	82.66
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	81.96
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	81.94
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	81.69
COG3118	304	Thioredoxin domain-containing protein [Posttransla	81.67
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	81.06
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	80.49

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-89  Score=711.60  Aligned_cols=419  Identities=26%  Similarity=0.330  Sum_probs=337.8

Q ss_pred             hHHHHhhhhhhHHHHHHH---------Hhh--hhcCcccceeeccccCCCC--CC-------CCCCCCCCCCCceeeeec
Q 008244            8 LWVLLGLGLAGILLMTKK---------LKK--NIKQDFGAFIEKLQLLPPP--QP-------LPPKAPHPLTGLSFAVSD   67 (573)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~---------~~~--~~~~~~na~~~~~~~~~~~--~a-------~~~~~~gpL~Gvp~~vKD   67 (573)
                      +..+++..|++++..++.         ++|  +.|+.+|||++...+.++.  +|       ..+...|||+||||+|||
T Consensus         4 ~~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKD   83 (475)
T COG0154           4 LTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKD   83 (475)
T ss_pred             hhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEee
Confidence            456678888888666552         233  7889999999999887654  33       124557899999999999


Q ss_pred             ccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 008244           68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA  147 (573)
Q Consensus        68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGs  147 (573)
                      ||+|+|++||+||+.+.+  ++|.+||++|+||+++|||+|||||||||+|+.+|+|++||+|+||||++|+||||||||
T Consensus        84 n~~~~G~~Tt~gS~~l~~--~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGS  161 (475)
T COG0154          84 NIDTAGLPTTAGSKALED--YVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGS  161 (475)
T ss_pred             ccccCCCccCccChhhcc--CCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHH
Confidence            999999999999999986  478999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008244          148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-  226 (573)
Q Consensus       148 aaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-  226 (573)
                      ||+||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+ 
T Consensus       162 AaAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~  241 (475)
T COG0154         162 AAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDS  241 (475)
T ss_pred             HHHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988754332 


Q ss_pred             ---------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhh
Q 008244          227 ---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKT  289 (573)
Q Consensus       227 ---------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~  289 (573)
                                     ..++.||++..+.... ...++++.++++++++.|.  |++|++         ...|.+..... 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~Ga~v~~---------v~lp~~~~~~~-  310 (475)
T COG0154         242 PLPPPPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAGAEVVE---------VSLPLLSDDYA-  310 (475)
T ss_pred             ccccccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCCCEEEe---------ccCCchhhhhh-
Confidence                           1233466666665432 2346789999999999986  666632         22332211000 


Q ss_pred             hhhHHHHHH-HHHHHHHHhhhHH--HHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HHHHHhhcCCCCEE
Q 008244          290 NGELKNVMR-LIQRYEFKNNHNE--WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM---RSAISSLLKDDGIL  363 (573)
Q Consensus       290 ~~~l~~~~~-~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~---~~~~~~~~~~~DvL  363 (573)
                          ...+. .......+.....  +.......+++++++++..|..++..+|.++...|...   ++.+.++|+++|+|
T Consensus       311 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~D~l  386 (475)
T COG0154         311 ----LAAYYLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVL  386 (475)
T ss_pred             ----hhHHHHHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence                00010 0000011111111  44555677999999999999999999999998888555   99999999999999


Q ss_pred             EEcCCCCCCCCCCC-CCCC-hHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244          364 VTPTTAYPPPKLGG-KEML-SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (573)
Q Consensus       364 l~Pt~~~~ap~~~~-~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~  440 (573)
                      |+||+|.+||++++ .... ....+..+..||.++|++|+|+||||+|++ +|||+||||+|++++|..||+++.++|+.
T Consensus       387 l~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~~E~~  466 (475)
T COG0154         387 LTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAALEQA  466 (475)
T ss_pred             EeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            99999999999997 2111 111222223589999999999999999998 69999999999999999999999999987


Q ss_pred             HHH
Q 008244          441 LQE  443 (573)
Q Consensus       441 l~~  443 (573)
                      ...
T Consensus       467 ~~~  469 (475)
T COG0154         467 LGW  469 (475)
T ss_pred             hCC
Confidence            654

>PLN02722 indole-3-acetamide amidohydrolase

Probab=100.00  E-value=1.2e-88  Score=700.24  Aligned_cols=405  Identities=59%  Similarity=1.012  Sum_probs=334.0

Q ss_pred             hcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEe
Q 008244           30 IKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIG  109 (573)
Q Consensus        30 ~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~g  109 (573)
                      .|+.+|||++....+.    ..+...||||||||+|||+|+++|++||+||+.+.+.+.++.+||++|+||++||||++|
T Consensus         3 ~~~~~~a~~~~~~~~~----~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiilG   78 (422)
T PLN02722          3 TNPDYGAFMEKFVLSP----TSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVG   78 (422)
T ss_pred             cCCCCCcceeeccccC----CCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEEE
Confidence            5778999998864321    112467999999999999999999999999998875333578999999999999999999


Q ss_pred             ecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCcccc
Q 008244          110 KTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSH  189 (573)
Q Consensus       110 kt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~  189 (573)
                      |||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||||||||||||||||+||||+
T Consensus        79 KTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp~  158 (422)
T PLN02722         79 KTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVST  158 (422)
T ss_pred             EechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccc
Q 008244          190 MGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVL  267 (573)
Q Consensus       190 ~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv  267 (573)
                      .|++|+++++|++|||+|+++|+..+++++.+.+..+...+.||.+..+.+......++++...++++++.+.  |+.+ 
T Consensus       159 ~G~~pla~sld~~G~~ar~v~D~a~~~~~l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v-  237 (422)
T PLN02722        159 VGVIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIV-  237 (422)
T ss_pred             CCCCcccCCCCcccceeCCHHHHHHHHHHHcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCee-
Confidence            9999999999999999999999999999998776555566678877654432112234677888888888776  5554 


Q ss_pred             eeccCCccccccCCChhhhhh-----------hhhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCH
Q 008244          268 KHENLGEYFDSKVPSLKGFHK-----------TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISE  336 (573)
Q Consensus       268 ~~~~lg~~v~~~~p~~~~~~~-----------~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~  336 (573)
                      +..++...++...+.+..+..           ....+...+..+..++....+..|+....+.+++.++.+++.|..++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s~  317 (422)
T PLN02722        238 KHVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTTE  317 (422)
T ss_pred             eecchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCCH
Confidence            223332222222222211100           001122344445666777778888877778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCc
Q 008244          337 TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPT  416 (573)
Q Consensus       337 ~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPv  416 (573)
                      .+|.++++.|.++++++.++|+++|+||+||+|.+||+++........++..++.+|.++|++|+|+||||+|..+|||+
T Consensus       318 ~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPv  397 (422)
T PLN02722        318 EKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPV  397 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCCE
Confidence            99999999999999999999999999999999999999875422333444455678999999999999999999899999


Q ss_pred             eeEEEeccCCcHHHHHHHHHHHH
Q 008244          417 SVSFIARHGGDRFLLDTVQNMYA  439 (573)
Q Consensus       417 Glq~~~~~~~d~~ll~~a~~le~  439 (573)
                      |||++|++++|..||+++..+..
T Consensus       398 Glqivg~~~~D~~lL~~a~~l~~  420 (422)
T PLN02722        398 SVSLLAKHGSDGFLLNLVESLYG  420 (422)
T ss_pred             EEEEECCCCChHHHHHHHHHHHh
Confidence            99999999999999999998764

>PRK09201 amidase; Provisional

Probab=100.00  E-value=2e-87  Score=703.92  Aligned_cols=410  Identities=26%  Similarity=0.352  Sum_probs=337.4

Q ss_pred             HHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccc
Q 008244            9 WVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD   70 (573)
Q Consensus         9 ~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~   70 (573)
                      ..+++.+|+++++.++     +    ++|  +.||.+|||++...|+++++|+       .++..||||||||+|||+|+
T Consensus         5 ~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~   84 (465)
T PRK09201          5 SSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFD   84 (465)
T ss_pred             ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccc
Confidence            3457888888866654     2    233  7799999999998877766543       35668999999999999999


Q ss_pred             cCCcccCCCchhhhhcCCCC-CCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 008244           71 IEGYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAV  149 (573)
Q Consensus        71 ~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaa  149 (573)
                      ++|++||+||+.+.+.  ++ ++||++|+|||++|||++||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus        85 v~G~~tt~Gs~~~~~~--~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAa  162 (465)
T PRK09201         85 VAGLTTLAGSKINRDR--PPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAA  162 (465)
T ss_pred             cCCcccCcCChhhccC--CCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence            9999999999998763  56 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccC--
Q 008244          150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ--  227 (573)
Q Consensus       150 aVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--  227 (573)
                      +||+|++|+|+|||||||||||||||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+.  
T Consensus       163 aVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~d~~d~~~  242 (465)
T PRK09201        163 AVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQ  242 (465)
T ss_pred             HHHcCCCceEEecCCCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHHhcCCCCCCccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999876432211  


Q ss_pred             ---------------CCCceEEEcccchhhcCCChHHHHHHHHHHHHHHcCCccceeccCCccccccCCChhhhhhhhhh
Q 008244          228 ---------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGE  292 (573)
Q Consensus       228 ---------------~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~  292 (573)
                                     .++.||++..+.+  ....++++.++++++++.|. +.+  .++        .|.....      
T Consensus       243 ~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~-~~~--~v~--------~~~~~~~------  303 (465)
T PRK09201        243 ADRPAEPTAPLLDRGAEGLRIAVLGGYF--AQWADPEARAAVDRVAKALG-ATR--EVE--------LPEAARA------  303 (465)
T ss_pred             ccCCCcchhhhhccCCCCCEEEEECccc--cCCCCHHHHHHHHHHHHHcc-Cce--eec--------CCchhHH------
Confidence                           1334666654433  12357899999999998873 211  011        1221111      


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCC
Q 008244          293 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP  372 (573)
Q Consensus       293 l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~a  372 (573)
                       ......+...|....+..++....+.+++.++.++..+..++..+|.++++.|+.+++.|.++|+++|+||+||+|.+|
T Consensus       304 -~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a  382 (465)
T PRK09201        304 -RAAAFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSA  382 (465)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCC
Confidence             1112223334545556666666667899999999999988999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC---C-hHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244          373 PKLGGKEM---L-SEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (573)
Q Consensus       373 p~~~~~~~---~-~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~  440 (573)
                      |+++....   . ...+...+..||.+||++|+|+||||+|..+|||+|||++|++++|..||+++..+|+.
T Consensus       383 p~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~le~~  454 (465)
T PRK09201        383 PLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAALEQQ  454 (465)
T ss_pred             CcccccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHhh
Confidence            99975321   1 11112234458999999999999999998799999999999999999999999999963

>TIGR02715 amido_AtzE amidohydrolase, AtzE family

Probab=100.00  E-value=2.4e-87  Score=701.71  Aligned_cols=390  Identities=27%  Similarity=0.382  Sum_probs=323.9

Q ss_pred             hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCC-CCChHHHHHH
Q 008244           29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA-SRTSTVVSTL  100 (573)
Q Consensus        29 ~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L  100 (573)
                      +.||.+|||++...++++++|+       .++..||||||||+|||+|+++|++||+||+.+.+.  ++ .+||++|+||
T Consensus        29 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~~--~p~~~dA~vV~rL  106 (452)
T TIGR02715        29 QADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGLTTLAGAKINRDL--APAKRDATLVQRL  106 (452)
T ss_pred             HHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCceeCcCChhhccC--CCCCCCHHHHHHH
Confidence            7799999999998877766543       356679999999999999999999999999998753  55 7999999999


Q ss_pred             HhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccc
Q 008244          101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF  180 (573)
Q Consensus       101 ~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~Gl  180 (573)
                      |+||||++||||||||+++.+|.|++||+|+||||++|+||||||||||+||+|++|+|+||||||||||||||||||||
T Consensus       107 ~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~cGv~Gl  186 (452)
T TIGR02715       107 SAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGL  186 (452)
T ss_pred             HHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHCCCCceEEeeCCCCcchhhHHHhCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEcccchhhc
Q 008244          181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELL  243 (573)
Q Consensus       181 kPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-----------------~~~~~rl~i~~~~~~~~  243 (573)
                      |||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+                 ..++.||++..+.+  .
T Consensus       187 KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~~~~d~~~~~~p~~~~~~~~~~~~~~lrig~~~~~~--~  264 (452)
T TIGR02715       187 KPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDRPAEPTVPLLPAGISGLRIAVLGGWF--Q  264 (452)
T ss_pred             eCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhhcCCCCCEEEEECccc--c
Confidence            9999999999999999999999999999999999999987643211                 12345666654433  1


Q ss_pred             CCChHHHHHHHHHHHHHHcCCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHH
Q 008244          244 KIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPD  323 (573)
Q Consensus       244 ~~~~~~~~~~~~~a~~~l~G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  323 (573)
                      ...++++.++++++++.|. ..++        +  ..|.....       ...+..+...+....+..++....+.+++.
T Consensus       265 ~~~~~~v~~a~~~a~~~L~-~~~~--------v--~~~~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  326 (452)
T TIGR02715       265 QNADPEALAAVGRVAKALG-ATTI--------V--ELPDAERA-------RAAAFVITASEGGNLHLDALRTRPQDFDPA  326 (452)
T ss_pred             CCCCHHHHHHHHHHHHhcC-Ceee--------e--cCCchHHH-------HHHHHHHHHHHHHHHHHHHhhhchhhcCHH
Confidence            2357899999999998873 2110        1  12222111       111222333344444556666666789999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCC--C--hHHHHHhhhhhhcccccc
Q 008244          324 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM--L--SEDYQNRAFSLLSIASVS  399 (573)
Q Consensus       324 ~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~--~--~~~~~~~~~~~t~~~nl~  399 (573)
                      ++.++..+..++..+|.++++.|+.+++.|.++|+++|+||+||+|.+||+++....  .  ...+...+..||.+||++
T Consensus       327 ~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~  406 (452)
T TIGR02715       327 TRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFA  406 (452)
T ss_pred             HHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCccchhc
Confidence            999999998899999999999999999999999999999999999999999875311  1  111122344589999999


Q ss_pred             CCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244          400 GCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (573)
Q Consensus       400 G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~  440 (573)
                      |+|++|||+|..+|||+|||++|++++|..||+++..+|+.
T Consensus       407 G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~le~~  447 (452)
T TIGR02715       407 GLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVLERQ  447 (452)
T ss_pred             CCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            99999999999899999999999999999999999999964

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.

>PRK05962 amidase; Validated

Probab=100.00  E-value=5.8e-87  Score=692.38  Aligned_cols=397  Identities=24%  Similarity=0.355  Sum_probs=328.8

Q ss_pred             hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCC-CCChHHHHHH
Q 008244           29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA-SRTSTVVSTL  100 (573)
Q Consensus        29 ~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L  100 (573)
                      +.||.+|||++...++++++|+       .++..|||+||||+|||+|+++|++||+||+.+.+.  ++ ++||++|+||
T Consensus        10 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~--~~~~~dA~vV~rL   87 (424)
T PRK05962         10 ARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDA--PPAGADALIVQRL   87 (424)
T ss_pred             hhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhcC--CCCcCChHHHHHH
Confidence            6789999999998877666542       356689999999999999999999999999998753  56 6899999999


Q ss_pred             HhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccc
Q 008244          101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF  180 (573)
Q Consensus       101 ~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~Gl  180 (573)
                      +++|||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+|||||||
T Consensus        88 ~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~Gl  167 (424)
T PRK05962         88 RNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGF  167 (424)
T ss_pred             HHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhhHhhCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc----CCCCceEEEcccchhhcCCChHHHHHHHHH
Q 008244          181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----QRSPRQIIIADDCFELLKIPADRVVQVVIK  256 (573)
Q Consensus       181 kPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~----~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~  256 (573)
                      |||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+    ..++.||++..+.+  ....++++.+++++
T Consensus       168 KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~vl~g~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~  245 (424)
T PRK05962        168 KPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLEVLPVAGLRIGLPKGYL--LADMEPDVAAAFEA  245 (424)
T ss_pred             ecCCCceeCCCcccCccccCccccccCCHHHHHHHHHHHcCCCCCcccccCcCCcEEEEEcccc--cccCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999887654321    22345666655433  22357899999999


Q ss_pred             HHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcC
Q 008244          257 STEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEI  334 (573)
Q Consensus       257 a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  334 (573)
                      +++.|.  |++|++ .+        .|.+.+...    .......+...+....+..|+....+.+++.++.++..+..+
T Consensus       246 a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  312 (424)
T PRK05962        246 SLAALEKAGARIAD-LA--------IDDLIARLA----EATRIGSIAGIEASHIHADWLADLDANVDIRVKRPLSRRIKV  312 (424)
T ss_pred             HHHHHHHCCCEEEE-ec--------cchHHHHHH----HHHHHhHHHHHHHHHHHHHHHhhchhhCCHHHHHHHHhccCC
Confidence            999885  776643 11        122111000    000111223334444556666666678999999999999899


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHH---HHhhhhhhccccccCCceeeecCccC
Q 008244          335 SETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDY---QNRAFSLLSIASVSGCCQVTVPLGYY  411 (573)
Q Consensus       335 s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~---~~~~~~~t~~~nl~G~PaisvP~g~~  411 (573)
                      +..+|.++++.|..+++.|.++|+++|+||+||+|.++|+++....+...+   ...++.||.++|++|+|++|||+|. 
T Consensus       313 ~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~-  391 (424)
T PRK05962        313 PLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG-  391 (424)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC-
Confidence            999999999999999999999999999999999999999987543222212   2224458999999999999999984 


Q ss_pred             CCCCceeEEEeccCCcHHHHHHHHHHHHHHHH
Q 008244          412 DKCPTSVSFIARHGGDRFLLDTVQNMYASLQE  443 (573)
Q Consensus       412 ~glPvGlq~~~~~~~d~~ll~~a~~le~~l~~  443 (573)
                      +|||+|||++|++++|..||++++.+|+.+++
T Consensus       392 ~glPvGlqlvg~~~~D~~lL~~a~~le~~l~~  423 (424)
T PRK05962        392 MALPAGLMLTARNGSDRRLLAAAASVEKLLEH  423 (424)
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHhcc
Confidence            69999999999999999999999999987653

>PRK07487 amidase; Provisional

Probab=100.00  E-value=1.2e-86  Score=698.92  Aligned_cols=416  Identities=22%  Similarity=0.240  Sum_probs=334.2

Q ss_pred             hhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008244            7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL   68 (573)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~   68 (573)
                      +++.+|+.+|+++++.++     +    ++|  +.||.+|||++...++++++|+       .++..|||+||||+|||+
T Consensus         4 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~   83 (469)
T PRK07487          4 ELWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVN   83 (469)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEecc
Confidence            366778999999976654     3    233  7799999999998877766543       255679999999999999


Q ss_pred             cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (573)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa  148 (573)
                      |+|+|++||+||+.+.+  +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||
T Consensus        84 ~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsA  161 (469)
T PRK07487         84 VDQAGFATTNGVRLQKD--LIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAA  161 (469)
T ss_pred             cccCCCccCcchHHhcC--CCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Confidence            99999999999998876  4889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCC----CC-CCCCcccccccCHHHHHHHHHHhcCCC
Q 008244          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP----IS-TSLDTVGWFARDPKILRHVGHVLLQLP  223 (573)
Q Consensus       149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p----~~-~~~d~~G~~ar~~~d~~~v~~~~~~~~  223 (573)
                      |+||+|++|+|+|||||||||||||||||||||||+||||+.|+++    ++ .++|++|||+|+++|+..+++++.+.+
T Consensus       162 aAVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d  241 (469)
T PRK07487        162 AAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPD  241 (469)
T ss_pred             HHHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999873    33 478999999999999999999987643


Q ss_pred             ccc----------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhh
Q 008244          224 FAA----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNG  291 (573)
Q Consensus       224 ~~~----------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~  291 (573)
                      ..+          ..++.||++..+.+.  ...++++.++++++++.|.  |++|++ .       ...|.+.+.     
T Consensus       242 ~~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~-------~~~~~~~~~-----  306 (469)
T PRK07487        242 PRDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAGWTVEE-V-------DDTPPLREA-----  306 (469)
T ss_pred             CCCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCCCEEEe-c-------CCCCchHHH-----
Confidence            222          123456766554331  2357899999999999885  666532 1       012333221     


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHHHhh-CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCC
Q 008244          292 ELKNVMRLIQRYEFKNNHNEWIESV-KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY  370 (573)
Q Consensus       292 ~l~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~  370 (573)
                        ...+..+...+....+..++... .+.+.+.++..+..+..++..+|.++++.|+.++++|.++|+++|+||+||+|.
T Consensus       307 --~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~  384 (469)
T PRK07487        307 --AELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDYPLLLMPVSAE  384 (469)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence              11222233334444444444332 244666666666777889999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHH--hhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244          371 PPPKLGGKEMLSEDYQN--RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (573)
Q Consensus       371 ~ap~~~~~~~~~~~~~~--~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l  441 (573)
                      +||+++........+..  ....+|.++|++|+|++|||+|+.+|||+|||++|++++|..||++++.+|+.+
T Consensus       385 ~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE~~~  457 (469)
T PRK07487        385 LPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIEARG  457 (469)
T ss_pred             CCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHHHhh
Confidence            99998753222222211  111257799999999999999999999999999999999999999999999754

>PRK06102 hypothetical protein; Provisional

Probab=100.00  E-value=9.7e-87  Score=696.31  Aligned_cols=415  Identities=26%  Similarity=0.367  Sum_probs=334.7

Q ss_pred             HHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeeccccc
Q 008244           10 VLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDI   71 (573)
Q Consensus        10 ~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~   71 (573)
                      .+++.+|+++++.++     +    ++|  +.|+ +|||++...+.++++|+       .++..|||+||||+|||+|++
T Consensus         5 ~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v   83 (452)
T PRK06102          5 AKSAAQLAVLIQSGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDV   83 (452)
T ss_pred             ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEecccc
Confidence            356778888866554     2    233  5575 89999998877666543       356789999999999999999


Q ss_pred             CCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCC--CCCCCCCChHHHH
Q 008244           72 EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAP--SQMPGGSSSGAAV  149 (573)
Q Consensus        72 ~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~--~~~~GGSSgGsaa  149 (573)
                      +|++||+||+.+.+. .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||+  +|+||||||||||
T Consensus        84 ~G~~tt~Gs~~~~~~-~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGsAa  162 (452)
T PRK06102         84 AGSVTTAGSVVLANA-APASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAV  162 (452)
T ss_pred             CCCccCcCChhhccC-CCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHHHH
Confidence            999999999988753 2337999999999999999999999999999999999999999999996  7999999999999


Q ss_pred             HHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc---
Q 008244          150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---  226 (573)
Q Consensus       150 aVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---  226 (573)
                      +||+|++|+|+||||||||||||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+   
T Consensus       163 aVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~  242 (452)
T PRK06102        163 AVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVR  242 (452)
T ss_pred             HHHcCCCceEEecCCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHHHcCCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887653222   


Q ss_pred             -CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHH
Q 008244          227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY  303 (573)
Q Consensus       227 -~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~  303 (573)
                       +.++.||.+..+.+  ....++++.++++++++.|.  |++|++ .        ..|.+.+...    +...+..+...
T Consensus       243 ~~~~~~ri~~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~~v~~-~--------~~~~~~~~~~----~~~~~~~~~~~  307 (452)
T PRK06102        243 RPLAGLRLVVPETVV--FDDAEPGVRAAFEAAVERLQAAGALVER-Q--------AFPAFQEILD----LIARHGWLVTA  307 (452)
T ss_pred             cCCCCCEEEEecchh--cccCCHHHHHHHHHHHHHHHhCCCEEEe-c--------CCccHHHHHH----HHHHHHHHHHH
Confidence             22345666654432  13358899999999999886  666532 1        1233322111    00111122233


Q ss_pred             HHHhhhHHHHHh-hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCCh
Q 008244          304 EFKNNHNEWIES-VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS  382 (573)
Q Consensus       304 e~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~  382 (573)
                      +....+..++.. ..+.+.+.++.++..+..++..+|.++++.|.+++++|.++|+ +|+||+||+|.++|+++......
T Consensus       308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~  386 (452)
T PRK06102        308 EAFALHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADD  386 (452)
T ss_pred             HHHHHHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCc
Confidence            444445555543 3467899999999999999999999999999999999999999 89999999999999987532111


Q ss_pred             HHH---HHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244          383 EDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (573)
Q Consensus       383 ~~~---~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~l~  442 (573)
                      ..+   ...++.||.+||++|+|++|||+|+. +|||+|||++|++++|..||+++..+|+.+.
T Consensus       387 ~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l~  450 (452)
T PRK06102        387 DLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVIR  450 (452)
T ss_pred             hhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            111   12334589999999999999999987 8999999999999999999999999998763

>PRK06169 putative amidase; Provisional

Probab=100.00  E-value=9e-87  Score=700.03  Aligned_cols=414  Identities=20%  Similarity=0.240  Sum_probs=335.0

Q ss_pred             hhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008244            7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL   68 (573)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~   68 (573)
                      ++..+++.+|+++++.++     +    ++|  +.||.+|||++...+.++++|+       .++..||||||||+|||+
T Consensus         3 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~   82 (466)
T PRK06169          3 DLADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKDI   82 (466)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecc
Confidence            456678889988876654     3    233  6799999999998777665542       355679999999999999


Q ss_pred             cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (573)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa  148 (573)
                      |+++|++||+||+.+.+. .++.+||++|++||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||
T Consensus        83 ~~v~G~~tt~Gs~~~~~~-~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA  161 (466)
T PRK06169         83 FLTRGWPTLRGSRAIDAD-GPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAA  161 (466)
T ss_pred             cccCCcccCccChhhccC-CCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHH
Confidence            999999999999998753 3457999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008244          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--  226 (573)
Q Consensus       149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--  226 (573)
                      |+||+|++|+|+|||||||||+|||||||||||||+||+|+.|+.|++ ++|++|||+|+++|+..+++++.+.+..+  
T Consensus       162 aaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~l~g~~~~d~~  240 (466)
T PRK06169        162 AAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDWS  240 (466)
T ss_pred             HHHHcCCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHHhcCCCCCCCc
Confidence            999999999999999999999999999999999999999999998886 89999999999999999999887543211  


Q ss_pred             ---------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhh
Q 008244          227 ---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKT  289 (573)
Q Consensus       227 ---------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~  289 (573)
                                     ..++.||++..+..  ....++++.++++++++.|.  |++|++ ++         +++....  
T Consensus       241 ~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~~--  306 (466)
T PRK06169        241 ALPPPTTSFLDALDRDVRGLRIAYSPTLG--YVDVDPEVAALVAQAVQRLAALGARVEE-VD---------PGFSDPV--  306 (466)
T ss_pred             ccCCCCcchhhhhccCCCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHcCCEEEE-eC---------CCcchHH--
Confidence                           12345666654332  12357899999999999986  666532 11         1121110  


Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCC
Q 008244          290 NGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTA  369 (573)
Q Consensus       290 ~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~  369 (573)
                           ..+..+...+....+..+.....+.+++.++.++..+..++..+|.++++.|+.++++|.++|+++|+||+||+|
T Consensus       307 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~  381 (466)
T PRK06169        307 -----EAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTLP  381 (466)
T ss_pred             -----HHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCC
Confidence                 111111122222223333334456789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCh--HHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244          370 YPPPKLGGKEMLS--EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (573)
Q Consensus       370 ~~ap~~~~~~~~~--~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~l  441 (573)
                      .+||+++......  ......+..||.+||++|+|++|||+|+. +|||+|||++|++++|+.||+++..+|+.+
T Consensus       382 ~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~~  456 (466)
T PRK06169        382 IPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQAL  456 (466)
T ss_pred             CCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhhc
Confidence            9999987532111  11112334589999999999999999987 899999999999999999999999999763

>PRK08310 amidase; Provisional

Probab=100.00  E-value=8.8e-86  Score=677.31  Aligned_cols=388  Identities=39%  Similarity=0.657  Sum_probs=323.3

Q ss_pred             cCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEee
Q 008244           31 KQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGK  110 (573)
Q Consensus        31 ~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gk  110 (573)
                      ++.+||||...+.     ...++..||||||||+|||+|+++|++||+||+.+.+...++.+||++|+|||+||||++||
T Consensus         4 ~~~~~a~~~~~~~-----~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GK   78 (395)
T PRK08310          4 HDPFNAFIAKPDK-----PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGK   78 (395)
T ss_pred             CCccccccccCCC-----CCCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEe
Confidence            4688999987542     11246789999999999999999999999999998653357789999999999999999999


Q ss_pred             cchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccC
Q 008244          111 TVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHM  190 (573)
Q Consensus       111 t~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~  190 (573)
                      ||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+|||||||||||||+||||+.
T Consensus        79 Tn~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~  158 (395)
T PRK08310         79 TQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLE  158 (395)
T ss_pred             ccchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccce
Q 008244          191 GIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLK  268 (573)
Q Consensus       191 G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~  268 (573)
                      |+.|+++++|++|||+|+++|+..+++++.+.+..+...+.++.+..+.+   ...++++.++++++++.|.  +.++++
T Consensus       159 G~~~~~~~~d~~Gp~arsv~D~~~~~~~l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~g~vv~  235 (395)
T PRK08310        159 GVMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHLGPAKP  235 (395)
T ss_pred             CCcccccCCCeeeeeeCCHHHHHHHHHHHcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhCCceee
Confidence            99999999999999999999999999998876543333356777765433   2257899999999999884  223322


Q ss_pred             eccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008244          269 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNE  348 (573)
Q Consensus       269 ~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~  348 (573)
                       .++.      ...+..       +...+..+...+....+..++......+++.++.++..+..++..+|.++.+.|+.
T Consensus       236 -~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~  301 (395)
T PRK08310        236 -ASVP------PLSLDE-------WYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVEAARARRAA  301 (395)
T ss_pred             -ecCC------cccHHH-------HHHHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence             1100      011211       11222223334445556666666667799999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcH
Q 008244          349 MRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDR  428 (573)
Q Consensus       349 ~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~  428 (573)
                      +++++.++|+++|+||+||++.+||+++........+....+.||.++|++|+|+++||+|..+|||+|||+++++++|.
T Consensus       302 ~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQivg~~~~D~  381 (395)
T PRK08310        302 FARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDR  381 (395)
T ss_pred             HHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEEECCCCCHH
Confidence            99999999999999999999999999876433333333344568999999999999999998899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 008244          429 FLLDTVQNMYAS  440 (573)
Q Consensus       429 ~ll~~a~~le~~  440 (573)
                      .||+++..+|++
T Consensus       382 ~lL~~a~~le~~  393 (395)
T PRK08310        382 SLLALAQTIAAA  393 (395)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999964

>PRK07056 amidase; Provisional

Probab=100.00  E-value=2.9e-86  Score=693.07  Aligned_cols=413  Identities=26%  Similarity=0.355  Sum_probs=338.8

Q ss_pred             HhhhhhhHHHHHH-----H----Hhh--hhcCc-ccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccC
Q 008244           12 LGLGLAGILLMTK-----K----LKK--NIKQD-FGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIE   72 (573)
Q Consensus        12 ~~~~l~~~~~~~~-----~----~~~--~~~~~-~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~   72 (573)
                      ++.+|+++++.++     .    ++|  +.|+. +|||++...++++++|+       .++..||||||||+|||+|+++
T Consensus         7 ~~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~   86 (454)
T PRK07056          7 TLAALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVA   86 (454)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccC
Confidence            6778888866544     2    233  56864 99999998777666543       3566799999999999999999


Q ss_pred             CcccCCCchhhhhcCCCC-CCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCC----CCCCCCCCCChHH
Q 008244           73 GYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPA----APSQMPGGSSSGA  147 (573)
Q Consensus        73 g~~tt~Gs~~~~~~~~~~-~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~----~~~~~~GGSSgGs  147 (573)
                      |++||+||+.+.+.  ++ .+||++|+|||+||||++||||||||+++.+|+|++||+|+|||    |++|+||||||||
T Consensus        87 G~~tt~Gs~~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgGs  164 (454)
T PRK07056         87 GQVTRAGSRVLADA--PPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGA  164 (454)
T ss_pred             CCccCCCChhhccC--CCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchHH
Confidence            99999999998753  66 68999999999999999999999999999999999999999999    8999999999999


Q ss_pred             HHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008244          148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-  226 (573)
Q Consensus       148 aaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-  226 (573)
                      ||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+ 
T Consensus       165 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~d~  244 (454)
T PRK07056        165 AVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAVLAGEEPVVP  244 (454)
T ss_pred             HHHHHcCCCceEEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHHhcCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988765433 


Q ss_pred             ---CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHH
Q 008244          227 ---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQ  301 (573)
Q Consensus       227 ---~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~  301 (573)
                         ..++.||++..+.+  ....++++.++++++++.|.  |++|++ ++        .|.+.....    +. ....+.
T Consensus       245 ~~~~~~~lrig~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~-~~~~~~  308 (454)
T PRK07056        245 AARPLEGLRLAVPTTVV--LDGLDATVAAAFERALKRLSAAGAIIEE-IA--------FPELAELAE----IN-AKGGFS  308 (454)
T ss_pred             ccccccCcEEEEcchhh--ccCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHHHHH----HH-HhhhHH
Confidence               22445666655432  12357899999999999986  666632 22        222221111    00 001122


Q ss_pred             HHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCC
Q 008244          302 RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML  381 (573)
Q Consensus       302 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~  381 (573)
                      ..+....+..++....+.+.+.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.+||+++.....
T Consensus       309 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~  388 (454)
T PRK07056        309 AAESYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEAD  388 (454)
T ss_pred             HHHHHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCccccccc
Confidence            23444445556666667899999999999999999999999999999999999999999999999999999998753211


Q ss_pred             hHHHHH---hhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244          382 SEDYQN---RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (573)
Q Consensus       382 ~~~~~~---~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l~  442 (573)
                      ...+..   .++.||.+||++|+|+||||+|..+|||+|||++|++++|..||++++.+|+.++
T Consensus       389 ~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l~  452 (454)
T PRK07056        389 DAAFFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVLR  452 (454)
T ss_pred             chhhHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            222221   2334799999999999999999889999999999999999999999999998764

>PRK07486 amidase; Provisional

Probab=100.00  E-value=1.4e-85  Score=694.28  Aligned_cols=420  Identities=22%  Similarity=0.240  Sum_probs=331.7

Q ss_pred             ccchhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccC-CCCCCC-------CCCCCCCCCCceee
Q 008244            4 QSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLL-PPPQPL-------PPKAPHPLTGLSFA   64 (573)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~-~~~~a~-------~~~~~gpL~Gvp~~   64 (573)
                      |-.++..+++.+|+++++.++     +    ++|  +.|+.+|||++...++ ++++|+       .++..||||||||+
T Consensus         5 ~~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~   84 (484)
T PRK07486          5 PPDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQA   84 (484)
T ss_pred             ChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEE
Confidence            334566678999999976654     2    233  7799999999986533 334332       35667999999999


Q ss_pred             eecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 008244           65 VSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSS  144 (573)
Q Consensus        65 vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSS  144 (573)
                      |||+|+++|++||+||+.+.+  +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||
T Consensus        85 vKD~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSS  162 (484)
T PRK07486         85 PKDLAPTKGIRTTLGSPIFAD--QVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSS  162 (484)
T ss_pred             EecccccCCcCcccccHhhCC--CCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCc
Confidence            999999999999999999876  488999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCC-CCCCCCCcccccccCHHHHHHHHHHhcCCC
Q 008244          145 SGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII-PISTSLDTVGWFARDPKILRHVGHVLLQLP  223 (573)
Q Consensus       145 gGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~  223 (573)
                      |||||+||+|++|+|+|||||||||||||||||||||||+||||+.|.+ ++++++|++|||+|+++|+..+++++.+.+
T Consensus       163 gGsAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~d  242 (484)
T PRK07486        163 GGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYD  242 (484)
T ss_pred             HHHHHHHHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999998755 789999999999999999999999987643


Q ss_pred             ccc-----------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChh
Q 008244          224 FAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLK  284 (573)
Q Consensus       224 ~~~-----------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~  284 (573)
                      ..+                 ..++.||++..+.+. ....++++.++++++++.|.  |++|++ .         .+.+.
T Consensus       243 ~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~---------~~~~~  311 (484)
T PRK07486        243 PRDPLSLAEDPARFAQPLEADLRGKRIAWLGDWGG-YLPMEAGVLELCEAALATLRELGCDVEA-A---------LPAFP  311 (484)
T ss_pred             CCCCccccCCCcchhhHhccCCCCCEEEEeCcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-e---------CCCcc
Confidence            211                 123456666544321 11247899999999999986  666532 1         11110


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhhhHHHHH--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCE
Q 008244          285 GFHKTNGELKNVMRLIQRYEFKNNHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI  362 (573)
Q Consensus       285 ~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dv  362 (573)
                      .. .    ..+.+..+...+.......++.  .....+++.++.++..+..++..+|.++++.|..+++.|.++|+++|+
T Consensus       312 ~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~  386 (484)
T PRK07486        312 PE-R----LWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRLFERYDF  386 (484)
T ss_pred             hH-H----HHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence            00 0    0111111111111111222221  134568899999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCC-----CChHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHH
Q 008244          363 LVTPTTAYPPPKLGGKE-----MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQN  436 (573)
Q Consensus       363 Ll~Pt~~~~ap~~~~~~-----~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~  436 (573)
                      ||+||+|.+||+++...     .........+..+|.+||++|+|+||||+|++ +|||+|||++|++++|..||++++.
T Consensus       387 ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~lL~~a~~  466 (484)
T PRK07486        387 LALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAHA  466 (484)
T ss_pred             EEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence            99999999999886421     11111122334478899999999999999987 8999999999999999999999999


Q ss_pred             HHHHH
Q 008244          437 MYASL  441 (573)
Q Consensus       437 le~~l  441 (573)
                      +|+.+
T Consensus       467 le~~~  471 (484)
T PRK07486        467 YEQAT  471 (484)
T ss_pred             HHhcc
Confidence            99753

>PRK07042 amidase; Provisional

Probab=100.00  E-value=1.6e-85  Score=690.10  Aligned_cols=412  Identities=18%  Similarity=0.157  Sum_probs=331.1

Q ss_pred             hhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008244            7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL   68 (573)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~   68 (573)
                      ++..+++.+|+++++.++     +    ++|  +.|+.+|||++...+.++++|+       +++..||||||||+|||+
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~   82 (464)
T PRK07042          3 ALHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKEN   82 (464)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcc
Confidence            355668888888876554     2    233  6799999999998877666543       356789999999999999


Q ss_pred             cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (573)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa  148 (573)
                      |+|+|++||+||+.+.+  .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||
T Consensus        83 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA  160 (464)
T PRK07042         83 IATRGVPVPLGTAATDL--PPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAG  160 (464)
T ss_pred             cccCCcccCCCChhhcC--CCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHH
Confidence            99999999999999865  4788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008244          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--  226 (573)
Q Consensus       149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--  226 (573)
                      |+||+|++|+|+|||||||||||||||||||||||+||||..|.+    +.|++|||||+++|+..+++++.+.+..+  
T Consensus       161 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~  236 (464)
T PRK07042        161 AAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSVLSRPDARDGT  236 (464)
T ss_pred             HHHHcCCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHHhcCCCCCCcc
Confidence            999999999999999999999999999999999999999998843    34899999999999999999987543211  


Q ss_pred             --------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhh
Q 008244          227 --------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN  290 (573)
Q Consensus       227 --------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~  290 (573)
                                    ..++.||++..+... ....++++.++++++++.|.  |++|++ ++         +.+...    
T Consensus       237 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~----  301 (464)
T PRK07042        237 SLPPQDIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAGAIVEP-VP---------PFLTRA----  301 (464)
T ss_pred             ccCCCCcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eC---------CchhHH----
Confidence                          113456666544321 12357899999999999986  666632 11         111110    


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCC
Q 008244          291 GELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY  370 (573)
Q Consensus       291 ~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~  370 (573)
                        ....+..+...+....+..+.....+.+.+.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.
T Consensus       302 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~Pt~~~  379 (464)
T PRK07042        302 --MLDGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSPVAPV  379 (464)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence              011111111122333344444555677889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCChH-HHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244          371 PPPKLGGKEMLSE-DYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (573)
Q Consensus       371 ~ap~~~~~~~~~~-~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~l  441 (573)
                      +||+++......+ ......+.||.+||++|+|+||||+|+. +|||+|||++|++++|..||+++..+|+.+
T Consensus       380 ~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~~  452 (464)
T PRK07042        380 PAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEGWR  452 (464)
T ss_pred             CCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHHHhc
Confidence            9999874221111 0111223589999999999999999987 899999999999999999999999999764

>PRK06170 amidase; Provisional

Probab=100.00  E-value=2.1e-85  Score=694.76  Aligned_cols=419  Identities=21%  Similarity=0.269  Sum_probs=332.2

Q ss_pred             ccchhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCC------CCCCCCCCCceeeee
Q 008244            4 QSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLP------PKAPHPLTGLSFAVS   66 (573)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~------~~~~gpL~Gvp~~vK   66 (573)
                      -+.++..+++.+|+++++.++     +    ++|  +.||.+|||++...++++++|++      ....||||||||+||
T Consensus         5 ~~~~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~gpL~GvPv~VK   84 (490)
T PRK06170          5 AADEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGERGPLLGIPVTVK   84 (490)
T ss_pred             ccchhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcCCCCCcCCceEEEe
Confidence            345677789999999977655     2    233  77999999999988777666531      124699999999999


Q ss_pred             cccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChH
Q 008244           67 DLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSG  146 (573)
Q Consensus        67 D~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgG  146 (573)
                      |+|+++|++||+||+.+.+  +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||
T Consensus        85 D~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG  162 (490)
T PRK06170         85 ESFNVAGLPTTWGFPDLRD--YVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGG  162 (490)
T ss_pred             cccccCCcccCCCChhhcC--CCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChHH
Confidence            9999999999999999876  48899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCC-----C--CCCCCcccccccCHHHHHHHHHHh
Q 008244          147 AAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP-----I--STSLDTVGWFARDPKILRHVGHVL  219 (573)
Q Consensus       147 saaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p-----~--~~~~d~~G~~ar~~~d~~~v~~~~  219 (573)
                      |||+||+|++|+|+|||||||||||||||||||||||+||||+.|++|     +  +.++|++|||+|+++|+..+++++
T Consensus       163 sAaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D~a~~l~~l  242 (490)
T PRK06170        163 SAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLDVM  242 (490)
T ss_pred             HHHHHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988     4  346899999999999999999998


Q ss_pred             cCCCccc---------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCC
Q 008244          220 LQLPFAA---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPS  282 (573)
Q Consensus       220 ~~~~~~~---------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~  282 (573)
                      .+.+..+               ..++.||++..+.+.  ...++++.++++++++.|.  |++|++. +      ...|.
T Consensus       243 ~g~d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~~-~------~~~~~  313 (490)
T PRK06170        243 AGPDPLDGGVAYRLALPPARHGRLKDFRVLVLDEHPL--LPTDAAVRAAIERLAAALADAGARVVRH-S------PLLPD  313 (490)
T ss_pred             hCCCccccccccccCCCcccccccCCCEEEEECCcCC--CCCCHHHHHHHHHHHHHHHHCCCEEEEc-C------CCCCc
Confidence            7643221               113456666554331  2357899999999999986  7766431 1      01122


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHhhhH-HHHHh------hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHh
Q 008244          283 LKGFHKTNGELKNVMRLIQRYEFKNNHN-EWIES------VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISS  355 (573)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~~~~e~~~~~~-~~~~~------~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~  355 (573)
                      +...       ...+..+...+....+. .+...      ....+.+.++.++..+..++..+|.++++.|..++++|.+
T Consensus       314 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~  386 (490)
T PRK06170        314 LAES-------ARLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAAREELRAAWRR  386 (490)
T ss_pred             hHHH-------HHHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            2211       11111111111111110 11111      1234567777778888889999999999999999999999


Q ss_pred             hcCCCCEEEEcCCCCCCCCCCCCCCC------h----HHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEecc
Q 008244          356 LLKDDGILVTPTTAYPPPKLGGKEML------S----EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARH  424 (573)
Q Consensus       356 ~~~~~DvLl~Pt~~~~ap~~~~~~~~------~----~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~  424 (573)
                      +|+++|+||+||+|.+||+++.....      .    ..+. ..+.||.++|++|+|++|||+|+. +|||+|||++|++
T Consensus       387 ~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlig~~  465 (490)
T PRK06170        387 FFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYW-DQLVWAGLATLPGLPATAIPIGLSATGLPVGVQIVGPA  465 (490)
T ss_pred             HHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchh-hhhhhcceecccCCCeEEEECCcCCCCCceeEEEecCC
Confidence            99999999999999999999753110      0    0111 223589999999999999999997 8999999999999


Q ss_pred             CCcHHHHHHHHHHHHHH
Q 008244          425 GGDRFLLDTVQNMYASL  441 (573)
Q Consensus       425 ~~d~~ll~~a~~le~~l  441 (573)
                      ++|..||+++..+|+.+
T Consensus       466 ~~D~~LL~~a~~lE~~~  482 (490)
T PRK06170        466 LEDRTPLRLAELLEEEF  482 (490)
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999999764

>PRK07235 amidase; Provisional

Probab=100.00  E-value=1.6e-84  Score=684.04  Aligned_cols=400  Identities=22%  Similarity=0.279  Sum_probs=320.7

Q ss_pred             hhcCcccceeeccccCCCCCC------CCCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHh
Q 008244           29 NIKQDFGAFIEKLQLLPPPQP------LPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVE  102 (573)
Q Consensus        29 ~~~~~~na~~~~~~~~~~~~a------~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~  102 (573)
                      ++++..|+++....++++..|      .+++..|||+||||+|||||+++|++||+||+.+.+  ++|.+||++|+||++
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~Gs~~~~~--~~p~~DA~vV~rL~~  130 (502)
T PRK07235         53 PVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEG--FVPSFDATVVTRLLD  130 (502)
T ss_pred             ccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCccChhhcC--CCCCCCHHHHHHHHH
Confidence            667888999988777664433      246778999999999999999999999999999986  489999999999999


Q ss_pred             CCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccC
Q 008244          103 GGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRP  182 (573)
Q Consensus       103 aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkP  182 (573)
                      ||||++||||||||+++.+++|++||+|+||||++|+||||||||||+||+|++|+|+||||||||||||||||||||||
T Consensus       131 AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsAAaVAaG~v~~aiGtDtGGSIRiPAa~cGvvGlKP  210 (502)
T PRK07235        131 AGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKP  210 (502)
T ss_pred             CCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCeEEecCCCCCcCccHHHcCcceecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccC------------------CCCceEEEcccchhhcC
Q 008244          183 SYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ------------------RSPRQIIIADDCFELLK  244 (573)
Q Consensus       183 T~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------------~~~~rl~i~~~~~~~~~  244 (573)
                      |+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+.                  .++.||++..+.+.. .
T Consensus       211 T~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~viag~d~~d~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~-~  289 (502)
T PRK07235        211 THGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPAQPPVDDYTAALDRGVKGLKIGILREGFGL-P  289 (502)
T ss_pred             CCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHHHcCCCCCCccccccCCccchhHHhccCCcCCEEEEeccccCC-C
Confidence            999999999999999999999999999999999999876532221                  233466665543321 2


Q ss_pred             CChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhH-HH-HHH-HHH------------HHHHHh
Q 008244          245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL-KN-VMR-LIQ------------RYEFKN  307 (573)
Q Consensus       245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l-~~-~~~-~~~------------~~e~~~  307 (573)
                      ..++++.++++++++.|.  |++|++ +++        |...........+ .. ... .+.            ..+...
T Consensus       290 ~~~~~v~~a~~~a~~~L~~~G~~V~~-v~~--------p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  360 (502)
T PRK07235        290 NSEPEVDEAVRAAAKRLEDLGATVEE-VSI--------PLHRLALAIWNPIATEGATAQMMLGNGYGFNWKGLYDTGLLD  360 (502)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchhhHHHHHHHHHHHHHHHHhhhccccccccccccchhHHH
Confidence            247889999999999886  666632 222        2111000000000 00 000 000            001111


Q ss_pred             hhHHHHHhhCCCCCHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChH
Q 008244          308 NHNEWIESVKPALDPDISAEIGEML----EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE  383 (573)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~g~----~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~  383 (573)
                      .+..+...+...+++.++.++..|.    .++..+|.++++.|..+++.|+++|+++|+||+||+|.+||+++....+..
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~  440 (502)
T PRK07235        361 AFGAGWRERADDLSETVKLVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASRE  440 (502)
T ss_pred             HHhhhhhcchhhcCHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchH
Confidence            2222233445678999999988775    467889999999999999999999999999999999999999976433333


Q ss_pred             HHHH---hhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244          384 DYQN---RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (573)
Q Consensus       384 ~~~~---~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~  440 (573)
                      .+..   .++.||.+||++|+|++|||+|+.+|||+|||++|++++|..||+++.++|+.
T Consensus       441 ~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~~GlPvGlQlvg~~~~D~~lL~~A~~~E~~  500 (502)
T PRK07235        441 EYVSRALEMIANTAPFDVTGHPAMSVPCGLVDGLPVGLMLVGRHFDEATILRAAAAFEAS  500 (502)
T ss_pred             HHHHHHHhhhccCccchhhCCCeEEEECCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHhh
Confidence            3332   23458999999999999999999999999999999999999999999999964

>PRK12470 amidase; Provisional

Probab=100.00  E-value=1.7e-85  Score=688.02  Aligned_cols=412  Identities=22%  Similarity=0.272  Sum_probs=326.6

Q ss_pred             hhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008244            7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL   68 (573)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~   68 (573)
                      ++..+++.+|+++++.++     +    ++|  +.||.+|||++...++++++|+       .+... ||+||||+|||+
T Consensus         5 ~~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-pL~GvPi~vKD~   83 (462)
T PRK12470          5 DLAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGVPIAIKDD   83 (462)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-CcCCCeEEEecC
Confidence            356678999999976554     3    233  7799999999998877666543       23445 999999999999


Q ss_pred             cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (573)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa  148 (573)
                      |+++|++||+||+.+ .  +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||
T Consensus        84 ~~v~G~~tt~Gs~~~-~--~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA  160 (462)
T PRK12470         84 VDVAGEVTTYGSAGH-G--PAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSA  160 (462)
T ss_pred             cccCCceeCCCCccc-C--CCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHH
Confidence            999999999999974 3  4789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008244          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--  226 (573)
Q Consensus       149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--  226 (573)
                      |+||+|++|+|+|||||||||||||||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+  
T Consensus       161 aAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~vl~~~~~~~~~  240 (462)
T PRK12470        161 AAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGE  240 (462)
T ss_pred             HHHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHHhcCCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887533211  


Q ss_pred             -------CCCCceEEEcccchh-hcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHH
Q 008244          227 -------QRSPRQIIIADDCFE-LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV  296 (573)
Q Consensus       227 -------~~~~~rl~i~~~~~~-~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~  296 (573)
                             ..++.||++..+.+. .....++++.++++++++.|.  |++|++ .+         |.+......  .+...
T Consensus       241 ~~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~~~~--~~~~~  308 (462)
T PRK12470        241 FVAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVV-RD---------PDYPAATYA--NYLPR  308 (462)
T ss_pred             hhhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCCCEEEE-eC---------CCchhHHHH--HHHHH
Confidence                   123456666544321 112357899999999999986  666532 11         111110000  00000


Q ss_pred             HHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCC
Q 008244          297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG  376 (573)
Q Consensus       297 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~  376 (573)
                      +  .   ...... .....+...+++.++.++..|..++..+|.....++..++++|.++|+++|+||+||+|.+||+++
T Consensus       309 ~--~---~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~  382 (462)
T PRK12470        309 F--F---RGISDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIG  382 (462)
T ss_pred             H--H---HHHHHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCCCCCCCCC
Confidence            0  0   000000 111223456889999999999999998888555556699999999999999999999999999987


Q ss_pred             CCCCC--hHHH--HHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244          377 GKEML--SEDY--QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (573)
Q Consensus       377 ~~~~~--~~~~--~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~  440 (573)
                      .....  ...+  ...+..||.++|++|+|+||||+|++ +|||+|||++|++++|..||+++..+|+.
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~  451 (462)
T PRK12470        383 AYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA  451 (462)
T ss_pred             ccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence            53211  1111  12334589999999999999999998 89999999999999999999999999975

>PRK07488 indole acetimide hydrolase; Validated

Probab=100.00  E-value=9.6e-85  Score=685.74  Aligned_cols=414  Identities=25%  Similarity=0.348  Sum_probs=330.2

Q ss_pred             chhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeec
Q 008244            6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD   67 (573)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD   67 (573)
                      .++..+++.+|+++++.++     +    ++|  +.+ .+|||++...++++++|+       .+...+ ||||||+|||
T Consensus         6 ~~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~~g-L~GvPi~vKD   83 (472)
T PRK07488          6 PDVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAALL-LAGVPIVIKD   83 (472)
T ss_pred             hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCCCC-cCceEEEEEc
Confidence            4577789999999976654     2    233  334 699999998877666543       244456 9999999999


Q ss_pred             ccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 008244           68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA  147 (573)
Q Consensus        68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGs  147 (573)
                      +|+++|++||+||+.+.+  +++.+||++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+||||||||
T Consensus        84 ~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs  161 (472)
T PRK07488         84 NINTAGMPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGT  161 (472)
T ss_pred             ccccCCCccCcCChhhcc--CCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHH
Confidence            999999999999999876  378899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008244          148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-  226 (573)
Q Consensus       148 aaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-  226 (573)
                      ||+||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+ 
T Consensus       162 AaaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~~~  241 (472)
T PRK07488        162 AAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITGDAALPA  241 (472)
T ss_pred             HHHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988654322 


Q ss_pred             --CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHH
Q 008244          227 --QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQR  302 (573)
Q Consensus       227 --~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~  302 (573)
                        +.++.||++..+.+  ....++++.++++++++.|.  |++|++ .+        .|.+.++..      .....+..
T Consensus       242 ~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~------~~~~~~~~  304 (472)
T PRK07488        242 PVALAGLRLGVPAAPF--WDGLDPDVAAVAEAALAKLAAAGVTFVE-LD--------LPGLHELNE------AVGFPIAL  304 (472)
T ss_pred             CcCcCCCEEEEEcchh--ccCCCHHHHHHHHHHHHHHHHCCCEEEe-eC--------CcCHHHHhh------hHHHHHHH
Confidence              23456777654332  23347899999999999886  776632 22        222221100      01111222


Q ss_pred             HHHHhhhHHHHHhhCC----------CCCHHHHHHHHHh---hcCCHHHHHHHHHH-HHHHHHHHHhhcC--CCCEEEEc
Q 008244          303 YEFKNNHNEWIESVKP----------ALDPDISAEIGEM---LEISETVIENCKSI-RNEMRSAISSLLK--DDGILVTP  366 (573)
Q Consensus       303 ~e~~~~~~~~~~~~~~----------~~~~~~~~~~~~g---~~~s~~~~~~a~~~-r~~~~~~~~~~~~--~~DvLl~P  366 (573)
                      ++....+..++.....          ..++.++.+++.+   ..++..+|.++++. |..+++.|.++|+  ++|+||+|
T Consensus       305 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~D~ll~P  384 (472)
T PRK07488        305 YEALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFARHGLDAILFP  384 (472)
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEeC
Confidence            3333444444332221          2257776665433   46789999999888 9999999999998  78999999


Q ss_pred             CCCCCCCCCCCCCC------ChHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008244          367 TTAYPPPKLGGKEM------LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (573)
Q Consensus       367 t~~~~ap~~~~~~~------~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~  439 (573)
                      |+|.++|+++....      ....+ ..+..||.++|++|+|+||||+|++ +|||+|||++|++++|..||+++..+|+
T Consensus       385 t~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~LL~~A~~lE~  463 (472)
T PRK07488        385 TTPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLLAIGRALER  463 (472)
T ss_pred             CCCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHHHHHHHHHHH
Confidence            99999999975311      11222 2344579999999999999999997 8999999999999999999999999997


Q ss_pred             HH
Q 008244          440 SL  441 (573)
Q Consensus       440 ~l  441 (573)
                      .+
T Consensus       464 ~~  465 (472)
T PRK07488        464 VL  465 (472)
T ss_pred             hh
Confidence            53

>PRK06061 amidase; Provisional

Probab=100.00  E-value=5.6e-85  Score=687.82  Aligned_cols=416  Identities=23%  Similarity=0.270  Sum_probs=330.3

Q ss_pred             CccchhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCC------CCCCCCCCCceeee
Q 008244            3 SQSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLP------PKAPHPLTGLSFAV   65 (573)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~------~~~~gpL~Gvp~~v   65 (573)
                      |.+-++-.+++.+|+++++.++     +    ++|  +.||.+|||++...++++++|++      ....+|||||||+|
T Consensus        10 ~~~~~~~~~s~~~l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~pL~GvPv~v   89 (483)
T PRK06061         10 SGSGNDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRLPLLGVPIAV   89 (483)
T ss_pred             cCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCCCCCcCCCeEEE
Confidence            4456677788999999977654     2    233  77899999999988877665532      11235999999999


Q ss_pred             ecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCh
Q 008244           66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSS  145 (573)
Q Consensus        66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSg  145 (573)
                      ||+|+++|++||+||...   ..++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||
T Consensus        90 KD~~~v~G~~tt~Gs~~~---~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSg  166 (483)
T PRK06061         90 KDDVDVAGVPTAFGTAGE---VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSSG  166 (483)
T ss_pred             EcccccCCceecCCCccc---CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCChH
Confidence            999999999999999842   23457999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcc
Q 008244          146 GAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFA  225 (573)
Q Consensus       146 GsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~  225 (573)
                      ||||+||+|++|+|+||||||||||||+||||||||||+||||+.|+.+.+.++|++|||+|+++|+..+++++.+.+..
T Consensus       167 GsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~  246 (483)
T PRK06061        167 GSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHPG  246 (483)
T ss_pred             HHHHHHHcCCCceEeecCCCCcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999999998889999999999999999999988754321


Q ss_pred             c---------------CCCCceEEEcccchh--hcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhh
Q 008244          226 A---------------QRSPRQIIIADDCFE--LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGF  286 (573)
Q Consensus       226 ~---------------~~~~~rl~i~~~~~~--~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~  286 (573)
                      +               ..++.||++..+...  .....++++.++++++++.|.  |++|++ .+         +.+...
T Consensus       247 d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~  316 (483)
T PRK06061        247 DRHRPPPVTVSDAVGRAPGPLRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLGHTVVP-AD---------PDYGLR  316 (483)
T ss_pred             CCcccCCccchhhhccCCCCcEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-eC---------CchhhH
Confidence            1               113345555433211  112357899999999999985  666532 11         111100


Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhhHHHHHh--hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEE
Q 008244          287 HKTNGELKNVMRLIQRYEFKNNHNEWIES--VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILV  364 (573)
Q Consensus       287 ~~~~~~l~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl  364 (573)
                      ..    .....      .....+..+...  ....+++.++.++..+..++..+|.++++.|..+++.|.++|+++|+||
T Consensus       317 ~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll  386 (483)
T PRK06061        317 LG----LNFLP------RSTAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVVL  386 (483)
T ss_pred             HH----HHHHH------HHHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence            00    00000      000111222222  2346789999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCCCCCCCCCCC-h---HHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008244          365 TPTTAYPPPKLGGKEML-S---EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (573)
Q Consensus       365 ~Pt~~~~ap~~~~~~~~-~---~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~  439 (573)
                      +||+|.+||+++..... .   ......+..||.+||++|+|+||||+|.. +|||+|||++|++++|..||+++..+|+
T Consensus       387 ~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~~A~~le~  466 (483)
T PRK06061        387 APTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLEA  466 (483)
T ss_pred             cCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHHHHHHHHh
Confidence            99999999999753211 0   00111233489999999999999999987 8999999999999999999999999997


Q ss_pred             HH
Q 008244          440 SL  441 (573)
Q Consensus       440 ~l  441 (573)
                      ++
T Consensus       467 ~~  468 (483)
T PRK06061        467 VS  468 (483)
T ss_pred             hc
Confidence            64

>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit

Probab=100.00  E-value=2.9e-85  Score=689.05  Aligned_cols=395  Identities=26%  Similarity=0.349  Sum_probs=312.3

Q ss_pred             hhcCcccceeeccccCCCCCCCCCCC--CCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCe
Q 008244           29 NIKQDFGAFIEKLQLLPPPQPLPPKA--PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGAT  106 (573)
Q Consensus        29 ~~~~~~na~~~~~~~~~~~~a~~~~~--~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai  106 (573)
                      +.|+.+|||++...++++++|++...  .||||||||+|||+|+++|++||+||+.+++  +++.+||++|+|||++|||
T Consensus        25 ~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~L~~aGAi  102 (460)
T TIGR00132        25 ANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKILEN--YIPPYDATVIERLKQAGAL  102 (460)
T ss_pred             HhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChhhcc--CCCCCchHHHHHHHHCCCE
Confidence            77999999999988776666543221  2899999999999999999999999999876  3788999999999999999


Q ss_pred             EEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCc
Q 008244          107 CIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGA  186 (573)
Q Consensus       107 ~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~  186 (573)
                      ++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+||||||||||+||
T Consensus       103 i~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~G~  182 (460)
T TIGR00132       103 IIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGR  182 (460)
T ss_pred             EEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCCeEeecCCCCcchhhhHhcCceeECCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEcccchhhcCCChHH
Q 008244          187 VSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADR  249 (573)
Q Consensus       187 v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-----------------~~~~~rl~i~~~~~~~~~~~~~~  249 (573)
                      ||+.|++|+++++|++|||+|+++|+..+++++.+.+..+                 ..++.||++..+.+.   ..+++
T Consensus       183 vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~---~~~~~  259 (460)
T TIGR00132       183 VSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKDLKGLKVGVVKEFSE---EMDKE  259 (460)
T ss_pred             CCCCCCcCcccCCCcccCeeCCHHHHHHHHHHHcCCCCCCCcccCCCccchhhhhhcccCCCEEEEECcccc---cCCHH
Confidence            9999999999999999999999999999999987643221                 123456666544332   24788


Q ss_pred             HHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhH--HHHHHHHHHHH---------HHhhhHHHHHh-
Q 008244          250 VVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL--KNVMRLIQRYE---------FKNNHNEWIES-  315 (573)
Q Consensus       250 ~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l--~~~~~~~~~~e---------~~~~~~~~~~~-  315 (573)
                      +.++++++++.|.  |++|++ ++        .|.+.........+  .+....+..++         ....+.+++.. 
T Consensus       260 v~~a~~~a~~~L~~~G~~v~~-~~--------~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (460)
T TIGR00132       260 VQEKFENALEVLEELGAEIVE-VS--------FPHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKT  330 (460)
T ss_pred             HHHHHHHHHHHHHHCCCEEEE-eC--------CCcHHHHHHHHHHHHHHHHHHHHhccccccccccccccccHHHHHhhc
Confidence            9999999999886  776632 22        22222111100000  00000000000         00112233332 


Q ss_pred             hCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCC-hHHHHHhh
Q 008244          316 VKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML-SEDYQNRA  389 (573)
Q Consensus       316 ~~~~~~~~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~-~~~~~~~~  389 (573)
                      ....+++.++.++..+...+     ..+|.++++.|..+++.|.++|+++|+||+||+|.+||+++..... ...+.  .
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~--~  408 (460)
T TIGR00132       331 RAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYL--S  408 (460)
T ss_pred             chhhcCHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhc--c
Confidence            23457788888887665444     3448899999999999999999999999999999999999754221 11221  1


Q ss_pred             hhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008244          390 FSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (573)
Q Consensus       390 ~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~  439 (573)
                      ..||.+||++|+|++|||+|+. +|+|+|||++|++++|..||+++..+|+
T Consensus       409 ~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig~~~~D~~lL~~A~~le~  459 (460)
T TIGR00132       409 DILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSYAFEQ  459 (460)
T ss_pred             cceeccccccCCCcEEEecCcCCCCCCeeEEEECCCCchHHHHHHHHHHhh
Confidence            1379999999999999999998 8999999999999999999999999985

This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.

>PRK06529 amidase; Provisional

Probab=100.00  E-value=3.8e-84  Score=682.96  Aligned_cols=411  Identities=18%  Similarity=0.227  Sum_probs=321.9

Q ss_pred             HhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCCCCC-CCCCCCceeeeecc-cccCCcccCC
Q 008244           12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKA-PHPLTGLSFAVSDL-FDIEGYVTGF   78 (573)
Q Consensus        12 ~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~-~gpL~Gvp~~vKD~-~~~~g~~tt~   78 (573)
                      ++.+|+++++.++     +    ++|  +.||.+|||++...++++++|++... .+|||||||+|||+ |+++|++||+
T Consensus         5 ~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~PL~GvPi~vKD~~~~v~G~~tt~   84 (482)
T PRK06529          5 DATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFAGVPIFLKDLGQELKGQLSTS   84 (482)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccCCCcCCCeEEEecCCcccCCCccCc
Confidence            5677777765543     3    233  67999999999988777666543322 25999999999998 7999999999


Q ss_pred             CchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCcc
Q 008244           79 GHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDF  158 (573)
Q Consensus        79 Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~  158 (573)
                      ||..+++  +++.+||++|+|||+||||++||||||||+++.+|.|++||+|+||||++|+||||||||||+||+|++|+
T Consensus        85 Gs~~~~~--~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~  162 (482)
T PRK06529         85 GSRLFKN--YQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVAL  162 (482)
T ss_pred             chHHhcC--CCCCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCce
Confidence            9999886  48899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcc-cccccCHHHHHHHHHHhcCCCcccC----------
Q 008244          159 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV-GWFARDPKILRHVGHVLLQLPFAAQ----------  227 (573)
Q Consensus       159 a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~-G~~ar~~~d~~~v~~~~~~~~~~~~----------  227 (573)
                      |+|||||||||+|||||||||||||+||||..+..+.+++.|++ |||+|+++|+..+++++.+.+..++          
T Consensus       163 aiGtDtgGSIRiPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~~~~g~~~~~~~~~~~~~~~~  242 (482)
T PRK06529        163 AAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFPLATLSKES  242 (482)
T ss_pred             eeecCCCCCeecChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHHHhhCCCCCCCcccCCcccch
Confidence            99999999999999999999999999999987765556666666 7999999999999998765331110          


Q ss_pred             -----CCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCC-ChhhhhhhhhhHHHHHHH
Q 008244          228 -----RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVP-SLKGFHKTNGELKNVMRL  299 (573)
Q Consensus       228 -----~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p-~~~~~~~~~~~l~~~~~~  299 (573)
                           .++.||++..+.+. ....++++.++++++++.|.  |++|++. +       ..| .+...       ...+..
T Consensus       243 ~~~~~~~~lrIg~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~ev-~-------~~p~~~~~~-------~~~~~~  306 (482)
T PRK06529        243 LFQSLQRPLKIAFYQRSPD-GSPVSLDAAKALKQAVTFLREQGHEVVEL-E-------EFPLDMTEV-------MRSYYI  306 (482)
T ss_pred             hccccCCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEc-C-------CCCCCHHHH-------HHHHHH
Confidence                 13346666543321 12357899999999999986  6666431 1       012 12211       111222


Q ss_pred             HHHHHHHhhhHHHHHhh-----CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCC
Q 008244          300 IQRYEFKNNHNEWIESV-----KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK  374 (573)
Q Consensus       300 ~~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~  374 (573)
                      +...+....+..+....     ...+++.++.++..|..++..+|.++++.|..++++|.++|+++|+||+||+|.+||+
T Consensus       307 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~  386 (482)
T PRK06529        307 MNSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPK  386 (482)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCC
Confidence            22223332233322111     2246777777777888899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCh----------------------HHHH--HhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHH
Q 008244          375 LGGKEMLS----------------------EDYQ--NRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRF  429 (573)
Q Consensus       375 ~~~~~~~~----------------------~~~~--~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~  429 (573)
                      ++......                      ..+.  ..++.||.+||++|+|+||||+|.. +|||+|||++|++++|..
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~  466 (482)
T PRK06529        387 HGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDL  466 (482)
T ss_pred             CCccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHHH
Confidence            87532110                      0111  1234589999999999999999987 899999999999999999


Q ss_pred             HHHHHHHHHHH
Q 008244          430 LLDTVQNMYAS  440 (573)
Q Consensus       430 ll~~a~~le~~  440 (573)
                      ||+++..+|+.
T Consensus       467 lL~~a~~le~~  477 (482)
T PRK06529        467 LLGIAEQFEAA  477 (482)
T ss_pred             HHHHHHHHHhc
Confidence            99999999964

>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

Probab=100.00  E-value=1.8e-84  Score=682.88  Aligned_cols=394  Identities=24%  Similarity=0.342  Sum_probs=311.4

Q ss_pred             hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHH
Q 008244           29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLV  101 (573)
Q Consensus        29 ~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~  101 (573)
                      +.||.+|||++...++++++|+       .++ .||||||||+|||+|+++|++||+||..+.+  +++.+|+++|+|||
T Consensus        21 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~~Lr   97 (459)
T PRK00012         21 EVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASKILEN--YVPPYDATVVEKLK   97 (459)
T ss_pred             HhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-CCccCCeEEEEecccccCCCccCccCHhhcc--CCCCcchHHHHHHH
Confidence            7799999999998877666543       234 7999999999999999999999999999876  48899999999999


Q ss_pred             hCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCccccc
Q 008244          102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFR  181 (573)
Q Consensus       102 ~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~Glk  181 (573)
                      +||||++||||||||+++.+|+|.+||+|+||||++|+||||||||||+||+|++|+|+|||||||||||||||||||||
T Consensus        98 ~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGvvG~K  177 (459)
T PRK00012         98 AAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLK  177 (459)
T ss_pred             HCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeeCCCCccchhHHHcCceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEcccchhhcC
Q 008244          182 PSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLK  244 (573)
Q Consensus       182 PT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-----------------~~~~~rl~i~~~~~~~~~  244 (573)
                      ||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+                 ..++.||++..+.+  ..
T Consensus       178 PT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~  255 (459)
T PRK00012        178 PTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDYTAALGKDIKGLKIGVPKEYF--GE  255 (459)
T ss_pred             CCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHHHhCCCCCCcccccCCCCchhhhhcccccccEEEEEcccc--cc
Confidence            999999999999999999999999999999999999887543211                 12344666654433  12


Q ss_pred             CChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhH--HHHHHHHHHHH---------HHhhhHH
Q 008244          245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL--KNVMRLIQRYE---------FKNNHNE  311 (573)
Q Consensus       245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l--~~~~~~~~~~e---------~~~~~~~  311 (573)
                      ..++++.++++++++.|.  |++|++ .++        |.+.+.......+  .+....+..+.         ....+.+
T Consensus       256 ~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (459)
T PRK00012        256 GLDPEVKEAVEAAIKKLEDLGAEIVE-VSL--------PHTKYALPAYYIIAPAEASSNLARYDGVRYGYRAEDAKDLEE  326 (459)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHHHHHHHHHHHHHHHHHhhcccccccccccccccHHH
Confidence            347889999999999886  776642 222        2222111000000  00000010000         0011222


Q ss_pred             HHHh-hCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCC-hHH
Q 008244          312 WIES-VKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML-SED  384 (573)
Q Consensus       312 ~~~~-~~~~~~~~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~-~~~  384 (573)
                      ++.. ....+++.++.++..+..++     ..+|.++++.|.+++++|.++|+++|+||+||+|.+||+++..... ...
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~  406 (459)
T PRK00012        327 MYEKTRSEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAM  406 (459)
T ss_pred             HHhhhhhhccCHHHHHHHHhCcchhccccchHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHhh
Confidence            2222 23457888888887665433     3458889999999999999999999999999999999999754211 112


Q ss_pred             HHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHH
Q 008244          385 YQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY  438 (573)
Q Consensus       385 ~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le  438 (573)
                      +..  ..||.++|++|+|+||||+|+. +|+|+|||++|++++|..||++++.+|
T Consensus       407 ~~~--~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~D~~LL~~a~~~E  459 (459)
T PRK00012        407 YLS--DIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE  459 (459)
T ss_pred             hcc--ccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCchHHHHHHHHHhC
Confidence            221  2379999999999999999988 799999999999999999999999875

>PRK07869 amidase; Provisional

Probab=100.00  E-value=3e-84  Score=682.04  Aligned_cols=415  Identities=18%  Similarity=0.244  Sum_probs=318.0

Q ss_pred             chhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCC-CCCCCCCCCceeeeecccccCC
Q 008244            6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLP-PKAPHPLTGLSFAVSDLFDIEG   73 (573)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~-~~~~gpL~Gvp~~vKD~~~~~g   73 (573)
                      .++..+|+.+|+++++.++     +    ++|  +.||.+|||++...++++++|++ ....||||||||+|||+|+++|
T Consensus        10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~~gpL~GvPi~vKD~~~v~G   89 (468)
T PRK07869         10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVAG   89 (468)
T ss_pred             hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCCCCCcCCCeEEEecCcccCC
Confidence            4666778999999976654     2    233  77999999999988877666543 2456999999999999999999


Q ss_pred             cccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhh
Q 008244           74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA  153 (573)
Q Consensus        74 ~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaa  153 (573)
                      ++||+||+.+.+  .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+
T Consensus        90 ~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGsAaAVAa  167 (468)
T PRK07869         90 LPTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAA  167 (468)
T ss_pred             cccCcccHhhcC--CCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHc
Confidence            999999999875  478899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccccCCCCcccccccccCcccccCCCCccccCCCCCC-CCCCCcccccccCHHHHHHHHHHhcCCCccc------
Q 008244          154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPI-STSLDTVGWFARDPKILRHVGHVLLQLPFAA------  226 (573)
Q Consensus       154 g~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~-~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~------  226 (573)
                      |++|+|+|||||||||||||||||||||||+||||..|+.|. ..++|++|||+|+++|+..+++++.+.+...      
T Consensus       168 G~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~v~~g~~~~~~~~~~~  247 (468)
T PRK07869        168 GVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERYYRNPKLPPIG  247 (468)
T ss_pred             CCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHHHHhccCccCCCCchh
Confidence            999999999999999999999999999999999999998774 3468999999999999999999876532110      


Q ss_pred             -----CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHH
Q 008244          227 -----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRL  299 (573)
Q Consensus       227 -----~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~  299 (573)
                           ..++.||++..+.+. ....++++.++++++++.|.  |++|++ .+        .|...++...   + ..+..
T Consensus       248 ~~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~~---~-~~~~~  313 (468)
T PRK07869        248 DVTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELGHRVEP-VD--------LPVPASFVDD---F-LLYWG  313 (468)
T ss_pred             hhcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eC--------CCchHHHHHH---H-HHHHH
Confidence                 123456666544321 02358899999999999986  666532 11        1211111100   0 00000


Q ss_pred             HHHHHHHhhhHHHHHhhCCCCCHHH-----HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCC
Q 008244          300 IQRYEFKNNHNEWIESVKPALDPDI-----SAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK  374 (573)
Q Consensus       300 ~~~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~  374 (573)
                      +...+........   ....+.+..     ......+.. +..+|.++++.|+.+++.+.++|+++|+||+||+|.+||+
T Consensus       314 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~ap~  389 (468)
T PRK07869        314 FLAFALVRGGRRT---FGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGTYDVVLTPTLAHTTPE  389 (468)
T ss_pred             HHHHHHHhhhhhh---cccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCCCCC
Confidence            1111110000000   111223332     222222332 4556888899999999999999999999999999999999


Q ss_pred             CCCCCCC--hHHH---HHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244          375 LGGKEML--SEDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (573)
Q Consensus       375 ~~~~~~~--~~~~---~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~  440 (573)
                      ++.....  ....   ...+..||.++|++|+|++|||+|+. +|||+|||++|++++|..||+++..+|+.
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~A~~le~~  461 (468)
T PRK07869        390 IGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEEA  461 (468)
T ss_pred             CCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHHHHHHHhc
Confidence            9753211  1111   11334589999999999999999997 89999999999999999999999999975

>PRK08186 allophanate hydrolase; Provisional

Probab=100.00  E-value=1e-83  Score=687.66  Aligned_cols=410  Identities=27%  Similarity=0.332  Sum_probs=328.5

Q ss_pred             HhhhhhhHHHHHH-----HH----hh-hhcCcccceeeccc-cCCCCCCCC----CCCCCCCCCceeeeecccccCCccc
Q 008244           12 LGLGLAGILLMTK-----KL----KK-NIKQDFGAFIEKLQ-LLPPPQPLP----PKAPHPLTGLSFAVSDLFDIEGYVT   76 (573)
Q Consensus        12 ~~~~l~~~~~~~~-----~~----~~-~~~~~~na~~~~~~-~~~~~~a~~----~~~~gpL~Gvp~~vKD~~~~~g~~t   76 (573)
                      ++.+|+.+++.++     ++    +| +.++.+|+|++... +++++++++    ....+||+||||+|||||||+|++|
T Consensus         8 t~~~l~~~~~~g~~t~~evv~a~l~ri~~~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~pT   87 (600)
T PRK08186          8 TLASLRAAYRAGTLTPRAVVAALYARIAAVDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPT   87 (600)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCccc
Confidence            6777777765543     32    33 23679999998875 344444322    1247899999999999999999999


Q ss_pred             CCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCC
Q 008244           77 GFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLV  156 (573)
Q Consensus        77 t~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~  156 (573)
                      |+||+.+.   ++|.+||++|+||++||||++||||||||+++.++.|+.||+|+||||++|+||||||||||+||+|++
T Consensus        88 TaGs~~~~---~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaAVAaG~~  164 (600)
T PRK08186         88 TAACPAFA---YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLV  164 (600)
T ss_pred             CcCCHhHc---CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCc
Confidence            99999885   268999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc----------
Q 008244          157 DFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----------  226 (573)
Q Consensus       157 ~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~----------  226 (573)
                      |+|+|||||||||+||+||||||||||+||||+.|++|.++++|++|||+|+++|+..+++++.+.+..+          
T Consensus       165 ~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~vl~g~d~~D~~s~~~p~~~  244 (600)
T PRK08186        165 SFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADPYSRANPADA  244 (600)
T ss_pred             ceEeeecCCCcchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHHhcCCCCCCcccccCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999887543221          


Q ss_pred             ---CCCCceEEEccc-chhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHH
Q 008244          227 ---QRSPRQIIIADD-CFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLI  300 (573)
Q Consensus       227 ---~~~~~rl~i~~~-~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~  300 (573)
                         ..++.||++..+ .+...  .++++.++++++++.|.  |++|++ ++        .|.+.+.      ....+...
T Consensus       245 ~~~~~~~lrIgv~~~~~~~~~--~~~~v~~a~~~a~~~L~~~G~~v~e-i~--------~~~~~~~------~~~~~~~~  307 (600)
T PRK08186        245 PAALPAGPRVGVPRAAQLEFF--GDAEAEAAFAAALARLEALGAELVE-ID--------FSPFLEA------ARLLYEGP  307 (600)
T ss_pred             ccccCCCCEEEEEcchhcccc--CCHHHHHHHHHHHHHHHHcCCeEEE-ec--------chhHHHH------HHHHHHHH
Confidence               012346665532 11111  36789999999999986  666632 22        2222111      01111122


Q ss_pred             HHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCC
Q 008244          301 QRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM  380 (573)
Q Consensus       301 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~  380 (573)
                      ...+.+..+..++..+.+.+.+.++.++..+..++..+|.+++..|..+++.++++|+++|+||+||+|.+++ ++....
T Consensus       308 ~~ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~  386 (600)
T PRK08186        308 WVAERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAA  386 (600)
T ss_pred             HHHHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcC
Confidence            2234444556666666678999999999999999999999999999999999999999999999999999875 333222


Q ss_pred             ChHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244          381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (573)
Q Consensus       381 ~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~l~  442 (573)
                      +....+..+..||.++|++|+|+|+||+|+. +|||+|||++|++++|..|++++..+|+.+.
T Consensus       387 ~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~~  449 (600)
T PRK08186        387 DPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAALA  449 (600)
T ss_pred             CchhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhcc
Confidence            2222223334589999999999999999987 8999999999999999999999999997643

>PRK08137 amidase; Provisional

Probab=100.00  E-value=4.1e-83  Score=677.63  Aligned_cols=405  Identities=23%  Similarity=0.257  Sum_probs=318.5

Q ss_pred             hHHHHhhhhhhHHHHHH-----H----Hhh--h---hcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeee
Q 008244            8 LWVLLGLGLAGILLMTK-----K----LKK--N---IKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVS   66 (573)
Q Consensus         8 ~~~~~~~~l~~~~~~~~-----~----~~~--~---~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vK   66 (573)
                      ...+|+.+|+++++.++     +    ++|  +   .||.+|||++...+ ++++|+       .+...|||+||||+||
T Consensus         3 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vK   81 (497)
T PRK08137          3 ALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLK   81 (497)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeee
Confidence            34567888988866544     2    233  2   37899999998664 555442       3556799999999999


Q ss_pred             cccccC-CcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhccc-----CCCCCCCCCCCCCCCCCCCC
Q 008244           67 DLFDIE-GYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI-----NGTNKHYDTPTNPAAPSQMP  140 (573)
Q Consensus        67 D~~~~~-g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~-----~~~~~~~G~t~NP~~~~~~~  140 (573)
                      |+|+|+ |++||+||..+++  +++.+||++|+|||+||||++||||||||+++.     +++|++||+|+||||++|+|
T Consensus        82 D~~~v~~G~~tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~  159 (497)
T PRK08137         82 DNIDAADPMPTTAGSLALAG--NRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSP  159 (497)
T ss_pred             cceeecCCCCcCcCcHhhcC--CCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            999999 9999999999876  488999999999999999999999999999644     45899999999999999999


Q ss_pred             CCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhc
Q 008244          141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL  220 (573)
Q Consensus       141 GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~  220 (573)
                      |||||||||+||+|++|+|+||||||||||||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.
T Consensus       160 GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl~  239 (497)
T PRK08137        160 CGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAIA  239 (497)
T ss_pred             CcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCccc--------------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccc
Q 008244          221 QLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS  278 (573)
Q Consensus       221 ~~~~~~--------------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~  278 (573)
                      +.+..+                    ..++.||++..+.+    ..++++.++++++++.|.  |++|++ +++      
T Consensus       240 g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~------  308 (497)
T PRK08137        240 GGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAGAVVID-VVD------  308 (497)
T ss_pred             CCCCCCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCCCEEEe-ccC------
Confidence            542211                    12345666654432    247889999999999986  776643 111      


Q ss_pred             cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHH-----------------------hhCCCCCHHHHHHHHHhhcCC
Q 008244          279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIE-----------------------SVKPALDPDISAEIGEMLEIS  335 (573)
Q Consensus       279 ~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~g~~~s  335 (573)
                        |.+..+..       .+..+...|....+..++.                       .....+++.++.++..+..++
T Consensus       309 --~~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (497)
T PRK08137        309 --LDDGDWGE-------AEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQAAPGLD  379 (497)
T ss_pred             --CchhhHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHHccCCCC
Confidence              22111110       1111111222222222111                       112457788889888888899


Q ss_pred             HHHHHHHHHHHHHH--HHHHHhhcC--CCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC
Q 008244          336 ETVIENCKSIRNEM--RSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY  411 (573)
Q Consensus       336 ~~~~~~a~~~r~~~--~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~  411 (573)
                      ..+|.++++.+..+  +++|.++|+  ++|+||+||++ ++|+++....  ..+.   ..+|.++|++|+|++|||+|+.
T Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~~---~~~t~~~nl~G~PaisvP~g~~  453 (497)
T PRK08137        380 DPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSFG---GSSSTPAAVAGYPHLTVPMGQV  453 (497)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--cccc---cccccccHhhCCCeEEEeCCCC
Confidence            99999998755554  489999997  78999999999 8888864211  1111   1368899999999999999999


Q ss_pred             CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244          412 DKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (573)
Q Consensus       412 ~glPvGlq~~~~~~~d~~ll~~a~~le~~l  441 (573)
                      +|||+|||++|++++|..||+++.++|+..
T Consensus       454 ~GlPvGvQlig~~~~d~~LL~~a~~lE~~~  483 (497)
T PRK08137        454 QGLPVGLSFIGAAWSEARLLELGYAYEQAT  483 (497)
T ss_pred             CCcCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999753

>PRK07139 amidase; Provisional

Probab=100.00  E-value=5.1e-82  Score=656.71  Aligned_cols=394  Identities=23%  Similarity=0.314  Sum_probs=307.4

Q ss_pred             HHhhhhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCC
Q 008244           25 KLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGG  104 (573)
Q Consensus        25 ~~~~~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aG  104 (573)
                      .+++..+..+|++.+...+..       ...|||+||||+|||+|+++|++||+||+.+.+.  +|.+||++|+|||+||
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~~--~~~~dA~vV~rLr~AG   81 (439)
T PRK07139         11 ALEELKNDKNNAVSYVFDEKN-------NKDGPLANCVFTIKDNFATSEGPTHASSKSLENF--KPSYNATVVQKLINAG   81 (439)
T ss_pred             HHHHhhccccCeEEEEecccC-------CCCCCcCCcEEEEEcceecCCCccCcChHHHccC--CCCCchHHHHHHHHCC
Confidence            345666778888888754432       3478999999999999999999999999998763  7889999999999999


Q ss_pred             CeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCC
Q 008244          105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSY  184 (573)
Q Consensus       105 ai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~  184 (573)
                      ||++||||||||+++.+|.|++||+|+||||++|+||||||||||+||++ +|+|+|||||||||+|||||||||||||+
T Consensus        82 AIilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGlKPT~  160 (439)
T PRK07139         82 AKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGFKPSY  160 (439)
T ss_pred             CEEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEEeCCC
Confidence            99999999999999999999999999999999999999999999999997 79999999999999999999999999999


Q ss_pred             CccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccC------------CCCceEEEcccchhhcCCChHHHHH
Q 008244          185 GAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ------------RSPRQIIIADDCFELLKIPADRVVQ  252 (573)
Q Consensus       185 G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------~~~~rl~i~~~~~~~~~~~~~~~~~  252 (573)
                      ||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+.            .++.||++... +   ...++++.+
T Consensus       161 G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~~~~~~~~~lrig~~~~-~---~~~~~~v~~  236 (439)
T PRK07139        161 GAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINNVKKTKPKKVAYLDC-F---KELEEYVAK  236 (439)
T ss_pred             CCcCCCCcccCcccCCccccccCCHHHHHHHHHHHcCCCcCCccccccCcccccccCCCEEEEECc-c---ccCCHHHHH
Confidence            9999999999999999999999999999999999876543221            23456665421 1   224788999


Q ss_pred             HHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhh--HHHHHHHHHHH---HH-----HhhhHHHHH-hhCCC
Q 008244          253 VVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRY---EF-----KNNHNEWIE-SVKPA  319 (573)
Q Consensus       253 ~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~--l~~~~~~~~~~---e~-----~~~~~~~~~-~~~~~  319 (573)
                      +++++++.|.  |++|++ +++...      .+.........  ..+....+..+   .+     ...+..++. .....
T Consensus       237 a~~~a~~~L~~~G~~v~~-~~~~~~------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (439)
T PRK07139        237 KYKKLINILKSENIEVEK-IKIDEK------LLKAIKPVYKIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTRSEG  309 (439)
T ss_pred             HHHHHHHHHHHCCCEEEE-eCCChh------HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHHhcchhc
Confidence            9999998886  666632 222110      01100000000  00000000000   00     001223322 23345


Q ss_pred             CCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhc
Q 008244          320 LDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLS  394 (573)
Q Consensus       320 ~~~~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~  394 (573)
                      +++.++.++..+..++.     .+|.++++.|+++++.|.++|+++|+||+||+|.+||+++........+. .+  +|.
T Consensus       310 ~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~-~~--~t~  386 (439)
T PRK07139        310 FGKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYM-DY--ILT  386 (439)
T ss_pred             cCHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhh-hh--ccc
Confidence            88999999988876654     35899999999999999999999999999999999999875321122221 11  478


Q ss_pred             cccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244          395 IASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (573)
Q Consensus       395 ~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l~  442 (573)
                      ++|++|+|+||||+|..+|||+|||+++++++|..||+++..+|+.++
T Consensus       387 ~~nl~G~PaisvP~g~~~glPiGlqivg~~~~D~~LL~~A~~lE~~~~  434 (439)
T PRK07139        387 ISNLVGNPSLSIPLGKYNNLPFNLAIDSKIYDDEKLLSYSLYIEELIK  434 (439)
T ss_pred             CcccCCCCeEEEeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence            899999999999999558999999999999999999999999998664

>TIGR02713 allophanate_hyd allophanate hydrolase

Probab=100.00  E-value=2.4e-82  Score=669.96  Aligned_cols=368  Identities=27%  Similarity=0.349  Sum_probs=303.2

Q ss_pred             CCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCC
Q 008244           54 APHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNP  133 (573)
Q Consensus        54 ~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP  133 (573)
                      ..+||+||||+||||||++|++||+||+.+.   ++|.+||++|+|||+||||++||||||||+++..+.|++||+|+||
T Consensus        28 ~~~PL~GvP~aVKD~idvaG~pTTaGs~~~~---~~p~~DA~vV~rLr~AGAIiiGKTN~~Efa~g~~g~n~~~G~t~NP  104 (561)
T TIGR02713        28 ERLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRSPYGAVRNA  104 (561)
T ss_pred             CCCCccCCeEEEEcccccCCCccCcCCHhHc---CCCCcCHHHHHHHHHCCCEEEEEeCchHhhcCCCCCCCCCCCCCCC
Confidence            3589999999999999999999999999885   3788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHH
Q 008244          134 AAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR  213 (573)
Q Consensus       134 ~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~  213 (573)
                      ||++|+|||||||||++||+|++++|+|||||||||||||||||||||||+||||..|++|+++++|++|||+|+++|+.
T Consensus       105 ~d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vG~~Arsv~D~~  184 (561)
T TIGR02713       105 FDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAE  184 (561)
T ss_pred             CCCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCccCCCccccccCCCeeechhCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcccC-------------CCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccc
Q 008244          214 HVGHVLLQLPFAAQ-------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS  278 (573)
Q Consensus       214 ~v~~~~~~~~~~~~-------------~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~  278 (573)
                      .+++++.+.+..+.             .++.||+|..+..... ..++++.++++++++.|.  |++|++ ++       
T Consensus       185 ~~l~v~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-v~-------  255 (561)
T TIGR02713       185 QVLRIAAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQLEF-FGDSQAEAAFAAAVERLEALGVEVVE-ID-------  255 (561)
T ss_pred             HHHHhhcCCCCcCccccCCCchhhcccCCCCEEEEECchhcCC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ec-------
Confidence            99998875432211             1334666654111111 136788999999999986  666532 22       


Q ss_pred             cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcC
Q 008244          279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLK  358 (573)
Q Consensus       279 ~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~  358 (573)
                       .+.+.+..      ...+...+..+.+..+..++..+.+.+.|.++.++..+..++..+|.++++.|+.+++.++++|+
T Consensus       256 -~~~~~~~~------~~l~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~  328 (561)
T TIGR02713       256 -FAPFLETA------ALLYEGPWVAERYAAVGEFVEAQPDALDPVVRGIITSATRFSAADAFAAQYRLAALRRKAEALLA  328 (561)
T ss_pred             -chhHHHHH------HHHHHHHHHHHHHHHHHHHHhhChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence             22221110      00111112223344455666666778999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHH
Q 008244          359 DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNM  437 (573)
Q Consensus       359 ~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~l  437 (573)
                      ++|+||+||+|.+++..+ ...+.......+..||.++|++|+|+||||+|+. +|||+|||+++++++|..|++++..+
T Consensus       329 ~~DvLl~Pt~p~~~~~~~-~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~l  407 (561)
T TIGR02713       329 GVDVLLVPTAPTHPTIEE-VLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRL  407 (561)
T ss_pred             cCCEEEeCCCCCCCCchh-ccCCchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCCChHHHHHHHHHH
Confidence            999999999999875433 2222222233334589999999999999999987 89999999999999999999999999


Q ss_pred             HHHH
Q 008244          438 YASL  441 (573)
Q Consensus       438 e~~l  441 (573)
                      |+..
T Consensus       408 e~~~  411 (561)
T TIGR02713       408 QAAS  411 (561)
T ss_pred             Hhcc
Confidence            9763

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.

>PRK06828 amidase; Provisional

Probab=100.00  E-value=8.1e-79  Score=637.16  Aligned_cols=387  Identities=19%  Similarity=0.212  Sum_probs=302.1

Q ss_pred             HhhhhhhHHHHHH-----H----Hhh--hhc---CcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccc
Q 008244           12 LGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD   70 (573)
Q Consensus        12 ~~~~l~~~~~~~~-----~----~~~--~~~---~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~   70 (573)
                      ++.+|+++++.++     +    ++|  +.|   |.+|||++...+ ++++|+       .++..|||+||||+|||+|+
T Consensus        14 ~~~~l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~   92 (491)
T PRK06828         14 TIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIE   92 (491)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEE
Confidence            4677777755444     2    233  556   589999998765 444432       35567999999999999999


Q ss_pred             cCC-cccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcc-----cCCCCCCCCCCCCCCCC---CCCCC
Q 008244           71 IEG-YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP---SQMPG  141 (573)
Q Consensus        71 ~~g-~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~t~NP~~~---~~~~G  141 (573)
                      ++| ++||+||..+.+  +++.+||++|++||+||||++||||||||+++     .++.|++||+|+||||+   +|+||
T Consensus        93 v~gg~~tt~Gs~~~~~--~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~pG  170 (491)
T PRK06828         93 TNDSMHTSAGTIALEQ--HISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVG  170 (491)
T ss_pred             ecCCCcCCcCcHHHcC--CCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcCCC
Confidence            996 999999999876  48899999999999999999999999999975     58999999999999999   68999


Q ss_pred             CCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcC
Q 008244          142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQ  221 (573)
Q Consensus       142 GSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~  221 (573)
                      |||||||++||+|++|+|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||+|+++|+..+++++.+
T Consensus       171 GSSgGsAaaVAag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~l~g  250 (491)
T PRK06828        171 GSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSLTG  250 (491)
T ss_pred             cCchHHHHHHHcCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             CCccc---------------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccc
Q 008244          222 LPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS  278 (573)
Q Consensus       222 ~~~~~---------------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~  278 (573)
                      .+..+                     ..++.||++..+.+......++++.++++++++.|.  |++|++..++.     
T Consensus       251 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~p-----  325 (491)
T PRK06828        251 VDEKDVVTHKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKETIEVLRSEGATVVEDIDIP-----  325 (491)
T ss_pred             CCccCccccccCcCCCCchhhhhccccCCCCEEEEEcCccccccCCCHHHHHHHHHHHHHHHhcCCEEEecccCc-----
Confidence            33211                     134556666432111111247889999999999986  77765423222     


Q ss_pred             cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHH----------------------HhhCCCCCHHHHH-HHHHhhcCC
Q 008244          279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWI----------------------ESVKPALDPDISA-EIGEMLEIS  335 (573)
Q Consensus       279 ~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~----------------------~~~~~~~~~~~~~-~~~~g~~~s  335 (573)
                         .+......         .+..+|+...+..++                      ......+++.+.. ++..+..++
T Consensus       326 ---~~~~~~~~---------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  393 (491)
T PRK06828        326 ---SFHREWSW---------GVLLYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFPNTLR  393 (491)
T ss_pred             ---cchhHHHH---------HHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcCCCCC
Confidence               11110000         000111111111111                      1222356775444 466777889


Q ss_pred             HHHHHHHHHHHHHHH--HHHHhhcCC--CCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC
Q 008244          336 ETVIENCKSIRNEMR--SAISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY  411 (573)
Q Consensus       336 ~~~~~~a~~~r~~~~--~~~~~~~~~--~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~  411 (573)
                      ..+|.++++.|..+.  +.++++|++  +|+||+||++..                      .+.|++|+|+||||+|++
T Consensus       394 ~~~y~~a~~~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~----------------------~~~~~~GlPaisvP~G~~  451 (491)
T PRK06828        394 NPEYLNARLEDIYFSQEQGIDFALEKYNLDAILFPSYIGS----------------------TICAKAGYPSIAIPAGYM  451 (491)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHhcCCCEEEeCCCCcc----------------------cchhhcCCCeEEeecCCC
Confidence            999999999888754  799999984  899999999753                      234699999999999997


Q ss_pred             -CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244          412 -DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (573)
Q Consensus       412 -~glPvGlq~~~~~~~d~~ll~~a~~le~~  440 (573)
                       +|||+||||+|++++|..||+++.++|+.
T Consensus       452 ~~GlPvGlQlig~~~~D~~LL~~A~a~E~~  481 (491)
T PRK06828        452 EGGRPFGITLASTAFSEGTLIKLAYAFEQA  481 (491)
T ss_pred             CCCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence             89999999999999999999999999975

>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence

Probab=100.00  E-value=1.2e-80  Score=658.93  Aligned_cols=384  Identities=30%  Similarity=0.424  Sum_probs=293.3

Q ss_pred             hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHH
Q 008244           29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLV  101 (573)
Q Consensus        29 ~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~  101 (573)
                      +.||.+|||++...+.|+++|+       .+...+|||||||+|||+|+++|++||+||..+.+.  ++++||++|++||
T Consensus        12 ~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~~--~~~~~a~~v~~L~   89 (441)
T PF01425_consen   12 AYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALADN--PPTEDAPVVQRLR   89 (441)
T ss_dssp             HHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTTB--BBSSS-HHHHHHH
T ss_pred             HhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccCc--Ccccccchhhhee
Confidence            7789999999998888777653       467889999999999999999999999999999864  8999999999999


Q ss_pred             hCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCccccc
Q 008244          102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFR  181 (573)
Q Consensus       102 ~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~Glk  181 (573)
                      +||||++||||||||+++.++.|+.||+|+||||+.++||||||||||+||+|++|+|+|||||||||+||+||||||||
T Consensus        90 ~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~PAa~~Gv~Glk  169 (441)
T PF01425_consen   90 AAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRIPAAFCGVVGLK  169 (441)
T ss_dssp             HTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEE
T ss_pred             cccccceeeecccceeccccccccccccccCcccccccccccccccccccceecccccccccccccccCchhccccceec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-------------------CCCCceEEEcccchhh
Q 008244          182 PSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-------------------QRSPRQIIIADDCFEL  242 (573)
Q Consensus       182 PT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-------------------~~~~~rl~i~~~~~~~  242 (573)
                      ||+|+||..|++|+++++|++||||||++|+..+++++.+.+..+                   ..++.||++..+.+. 
T Consensus       170 PT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~vl~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~lrIGv~~~~~~-  248 (441)
T PF01425_consen  170 PTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDVLAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGLRIGVPRDDGQ-  248 (441)
T ss_dssp             -STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHHHBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-EEEEEGGGG--
T ss_pred             cccccccccccccccccccccccccCcHHHHHHHHHHhcCCCccCCCccccccccccccccccccccCccccccccccc-
Confidence            999999999999999999999999999999999999987654221                   123456776655431 


Q ss_pred             cCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhh------hHHHH-
Q 008244          243 LKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNN------HNEWI-  313 (573)
Q Consensus       243 ~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~------~~~~~-  313 (573)
                      ....++++.++++++++.|.  |++|++ .        ..|.+.+...       .+..+...+....      +..++ 
T Consensus       249 ~~~~~~~v~~a~~~a~~~L~~~G~~vv~-~--------~~p~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~  312 (441)
T PF01425_consen  249 WVPVDPEVRRAFEEAAEALEAAGAEVVE-V--------DLPDLDEAMD-------AYYRIFVSEGAANLARYKDFARLLA  312 (441)
T ss_dssp             SSTSSHHHHHHHHHHHHHHHHTT-EEEE-E----------TTGGHHHH-------HHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred             cccccHHHHHHHHHHHHhhccccccccc-c--------cCchHHHHHH-------HHhhhHHHHHHHHHhhhhHHHHhhh
Confidence            23458899999999999986  666543 1        2333332211       1111111122211      11222 


Q ss_pred             HhhCCCCCHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCC---hHHH
Q 008244          314 ESVKPALDPDISAEIGEMLEISET-----VIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML---SEDY  385 (573)
Q Consensus       314 ~~~~~~~~~~~~~~~~~g~~~s~~-----~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~---~~~~  385 (573)
                      ......+.+.+..++..+......     .|.++++.|..+++++.++|+++|+||+||++.++|+++.....   ....
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~  392 (441)
T PF01425_consen  313 KWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRRARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTAL  392 (441)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHHHHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhhh
Confidence            122345667777777766533222     38999999999999999999999999999999999999976431   1111


Q ss_pred             --HHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHH
Q 008244          386 --QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLL  431 (573)
Q Consensus       386 --~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll  431 (573)
                        ...+..+|.++|++|+|+++||+|+. +|||+|||++|++++|+.||
T Consensus       393 ~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlvg~~~~D~~LL  441 (441)
T PF01425_consen  393 WNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLVGRPGSDEKLL  441 (441)
T ss_dssp             HHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEEESTTBHHHHH
T ss_pred             hhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEECCCCCccCcC
Confidence              22445578999999999999999997 89999999999999999986

They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....

>PRK11910 amidase; Provisional

Probab=100.00  E-value=6.7e-77  Score=622.05  Aligned_cols=391  Identities=20%  Similarity=0.279  Sum_probs=295.3

Q ss_pred             chhHHHHhhhhhhHHHHHH-----H----Hhh--hhcC---cccceeeccccCCCCCCCC-----CCCCCCCCCceeeee
Q 008244            6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQ---DFGAFIEKLQLLPPPQPLP-----PKAPHPLTGLSFAVS   66 (573)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~---~~na~~~~~~~~~~~~a~~-----~~~~gpL~Gvp~~vK   66 (573)
                      +.+...|+.+|+.+++.++     +    ++|  +.|+   .+|||++...+ ++++|++     ...+||||||||+||
T Consensus       160 ~~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~VK  238 (615)
T PRK11910        160 PLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLLK  238 (615)
T ss_pred             ccchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEEE
Confidence            3344556777777755443     2    343  5666   79999998765 4444321     123589999999999


Q ss_pred             cccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcc-----cCCCCCCCCCCCCCCCCCCCCC
Q 008244           67 DLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAPSQMPG  141 (573)
Q Consensus        67 D~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~t~NP~~~~~~~G  141 (573)
                      |||+++|++||+||.++.+  .++.+||++|+|||+||||++||||||||+++     ..++|.+||+|+||||++|+||
T Consensus       239 Dni~t~G~pTTaGS~al~~--~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~pG  316 (615)
T PRK11910        239 DNIGTKELPTSAGTVALKD--WVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPS  316 (615)
T ss_pred             cCcccCCCccCcccHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Confidence            9999999999999999986  47899999999999999999999999999977     3578899999999999999999


Q ss_pred             CCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcC
Q 008244          142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQ  221 (573)
Q Consensus       142 GSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~  221 (573)
                      ||||||||+||+|++++|+|||||||||+||+||||||||||+|++|+.|++|+++++|++|||+|++.|+..+++++.+
T Consensus       317 GSSsGSAAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~vi~g  396 (615)
T PRK11910        317 GSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTN  396 (615)
T ss_pred             CCCchHHHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCccc-----CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHH
Q 008244          222 LPFAA-----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELK  294 (573)
Q Consensus       222 ~~~~~-----~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~  294 (573)
                      .+..+     ..++.||++..+.      .++++..+++++++.|.  |++|++...        .|.+...       .
T Consensus       397 ~~~~~~l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga~Vve~~~--------~p~~~~~-------~  455 (615)
T PRK11910        397 TTSNPPLSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGATIIEGIA--------VGEFEQK-------D  455 (615)
T ss_pred             CCCcCccCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCCEEEeCCC--------CccHHHH-------H
Confidence            44321     2445677765431      24567788888888775  777653222        1222211       1


Q ss_pred             HHHHHHHHHHHHhhhHHHHHhhC--------------------CCCCHHHHHHHHHhh-cCCHHH-HHHHHHHHHHHHHH
Q 008244          295 NVMRLIQRYEFKNNHNEWIESVK--------------------PALDPDISAEIGEML-EISETV-IENCKSIRNEMRSA  352 (573)
Q Consensus       295 ~~~~~~~~~e~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~-~~s~~~-~~~a~~~r~~~~~~  352 (573)
                      ..+..+..+|+...+..++....                    ..+++.  .++..+. .++..+ +..+++.|..+++.
T Consensus       456 ~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (615)
T PRK11910        456 TDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQS--ELVKSQQSTITKQQADNLASNLIQSSQNE  533 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHH--HHHhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence            12223333455555555442211                    122222  1122222 134443 23366777888899


Q ss_pred             HHhhcC--CCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC--CCCCceeEEEeccCCcH
Q 008244          353 ISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGDR  428 (573)
Q Consensus       353 ~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~--~glPvGlq~~~~~~~d~  428 (573)
                      ++++|+  ++|+||+|+....                    .+...+++|+|+||||+|++  +|||+||||+|++++|.
T Consensus       534 l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~~sE~  593 (615)
T PRK11910        534 LDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITARNSDK  593 (615)
T ss_pred             HHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCCCCHH
Confidence            999996  7999999973210                    01224499999999999987  49999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 008244          429 FLLDTVQNMYASLQ  442 (573)
Q Consensus       429 ~ll~~a~~le~~l~  442 (573)
                      .|++++++||++.+
T Consensus       594 ~LL~~A~a~Eq~t~  607 (615)
T PRK11910        594 ILLNMGYAYEQQSK  607 (615)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999998654

>PRK06707 amidase; Provisional

Probab=100.00  E-value=3.6e-75  Score=612.17  Aligned_cols=383  Identities=23%  Similarity=0.261  Sum_probs=292.2

Q ss_pred             HHhhhhhhHHHHHH-----H----Hhh--hhc---CcccceeeccccCCCCCCC------CCCCCCCCCCceeeeecccc
Q 008244           11 LLGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL------PPKAPHPLTGLSFAVSDLFD   70 (573)
Q Consensus        11 ~~~~~l~~~~~~~~-----~----~~~--~~~---~~~na~~~~~~~~~~~~a~------~~~~~gpL~Gvp~~vKD~~~   70 (573)
                      .+..+|+.+++.++     +    ++|  +.|   +.+|||++...+ ++++|+      +....+|||||||+|||||+
T Consensus        71 ~~i~~l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD~i~  149 (536)
T PRK06707         71 ATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKDNVQ  149 (536)
T ss_pred             CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEecccc
Confidence            45667776655443     2    244  456   579999998664 444432      11235899999999999999


Q ss_pred             c-CCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcc-----cCCCCCCCCCCCCCCCC-CCCCCCC
Q 008244           71 I-EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP-SQMPGGS  143 (573)
Q Consensus        71 ~-~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~t~NP~~~-~~~~GGS  143 (573)
                      + +|++||+||..+.+.  ++.+||++|+|||+||||++||||||||++.     .+++|++||+|+||||+ .++||||
T Consensus       150 ~~~g~~TtaGs~~l~~~--~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~pGGS  227 (536)
T PRK06707        150 TAKVMPTSAGTYVLKDW--IADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGS  227 (536)
T ss_pred             cCCCCccCcccHhhccC--CCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Confidence            9 999999999998764  7889999999999999999999999999963     57889999999999999 6899999


Q ss_pred             ChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCC
Q 008244          144 SSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLP  223 (573)
Q Consensus       144 SgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~  223 (573)
                      |||||++||+|++++|+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||+|++.|+..+++++.+.+
T Consensus       228 SsGSAaAVAag~~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~~~g~d  307 (536)
T PRK06707        228 SSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMIGYD  307 (536)
T ss_pred             CchHHHHHhCCCCceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887543


Q ss_pred             ccc---------------------CCCCceEEEcccchhhcCCChHHHHHH-HHHHHHHHc--CCccceeccCCcccccc
Q 008244          224 FAA---------------------QRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLF--GRQVLKHENLGEYFDSK  279 (573)
Q Consensus       224 ~~~---------------------~~~~~rl~i~~~~~~~~~~~~~~~~~~-~~~a~~~l~--G~~vv~~~~lg~~v~~~  279 (573)
                      ..+                     ..+++||++..+..     .++++.++ ++++++.|.  |+++++.+++       
T Consensus       308 ~~d~~~~~~~~~~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga~iv~~~~l-------  375 (536)
T PRK06707        308 EKDVMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGAILTDYIQL-------  375 (536)
T ss_pred             CCccccccccccCCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCCEEEeccCC-------
Confidence            211                     13456777654321     24566666 477777765  7776542222       


Q ss_pred             CCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhCC----------CC-CHHHHHHHHHhhcCC---------H-HH
Q 008244          280 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKP----------AL-DPDISAEIGEMLEIS---------E-TV  338 (573)
Q Consensus       280 ~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~----------~~-~~~~~~~~~~g~~~s---------~-~~  338 (573)
                       |... .        . ...+..+|+..++..|+.....          .+ .+.++.++..+..+.         . ..
T Consensus       376 -~~~~-~--------~-~~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  444 (536)
T PRK06707        376 -NNGG-V--------D-NLQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAITKDEF  444 (536)
T ss_pred             -chhh-H--------H-HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhcccccHHH
Confidence             1100 0        0 0111223444444443321100          02 255666665554321         2 23


Q ss_pred             HHHHHHHHHHHHHHHHhhcC--CCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC-CCCC
Q 008244          339 IENCKSIRNEMRSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCP  415 (573)
Q Consensus       339 ~~~a~~~r~~~~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glP  415 (573)
                      +..+++.|..+++.++++|+  ++|+||+|..         .             .|.++|++|+|+||||+|++ +|+|
T Consensus       445 ~~~~~~~r~~~~~~~~~~~~~~~~Dall~p~~---------~-------------~t~~an~aG~PaitvP~G~~~~GlP  502 (536)
T PRK06707        445 EKVVQTSQENAKKELDRYLVEKGLDALVMINN---------E-------------EVLLSAVAGYPELAVPAGYDNNGEP  502 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCEEEecCC---------C-------------cchhhHhcCCCeEEEecccCCCCCC
Confidence            44567778889999999998  8999999831         0             26678999999999999987 8999


Q ss_pred             ceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244          416 TSVSFIARHGGDRFLLDTVQNMYASL  441 (573)
Q Consensus       416 vGlq~~~~~~~d~~ll~~a~~le~~l  441 (573)
                      +||||+|++++|..|+++++.+|+..
T Consensus       503 ~Glqlig~~~~e~~LL~~A~~~E~~~  528 (536)
T PRK06707        503 VGAVFVGKQFGEKELFNIGYAYEQQS  528 (536)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHhC
Confidence            99999999999999999999999754

>PRK06565 amidase; Validated

Probab=100.00  E-value=5.9e-73  Score=588.27  Aligned_cols=418  Identities=20%  Similarity=0.240  Sum_probs=296.5

Q ss_pred             HHhhhhhhHHHHH-----HH----Hhh--hhc-----CcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeec
Q 008244           11 LLGLGLAGILLMT-----KK----LKK--NIK-----QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD   67 (573)
Q Consensus        11 ~~~~~l~~~~~~~-----~~----~~~--~~~-----~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD   67 (573)
                      .++.+|.+++..+     |+    ++|  +.|     +.+|||+....+ ++++|+       .++.+||||||||+|||
T Consensus         7 ~si~~L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~vKD   85 (566)
T PRK06565          7 VSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTAKD   85 (566)
T ss_pred             CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEEec
Confidence            3556666665443     33    233  556     689999986554 544432       34567999999999999


Q ss_pred             ccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCC----CCCCC
Q 008244           68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQ----MPGGS  143 (573)
Q Consensus        68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~----~~GGS  143 (573)
                      +|+++|++||+||..+.+  .++.+||++|++||+||||++||||||||+++.++ |.+||+|+||||++|    +||||
T Consensus        86 ~~~v~G~~TT~Gs~~l~~--~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~pGGS  162 (566)
T PRK06565         86 SYLVKGLTAASGSPAFKD--LVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPFASGS  162 (566)
T ss_pred             ccccCCCCcccccHhhcC--CCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCCCCCC
Confidence            999999999999999976  48899999999999999999999999999999876 679999999999999    59999


Q ss_pred             ChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCC
Q 008244          144 SSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLP  223 (573)
Q Consensus       144 SgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~  223 (573)
                      |||||++||+|++++|+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||+|+++|+..+++++.+.+
T Consensus       163 SgGsAaAVAag~~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~vl~g~D  242 (566)
T PRK06565        163 SNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVIVADD  242 (566)
T ss_pred             CccHHHHHhCCCCcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887532


Q ss_pred             cc--------------------------------cCCCCceEEEcccchhhcC------------------CChHHHHHH
Q 008244          224 FA--------------------------------AQRSPRQIIIADDCFELLK------------------IPADRVVQV  253 (573)
Q Consensus       224 ~~--------------------------------~~~~~~rl~i~~~~~~~~~------------------~~~~~~~~~  253 (573)
                      ..                                ...+++||++...++....                  ..++++.+.
T Consensus       243 ~~d~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  322 (566)
T PRK06565        243 PDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRPSVIDL  322 (566)
T ss_pred             cccccchhhccccccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCHHHHHH
Confidence            11                                1134567777655432110                  125689999


Q ss_pred             HHHHHHHHc--CCccceeccCCcc--ccccCC---Ch-------hhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhC--
Q 008244          254 VIKSTEKLF--GRQVLKHENLGEY--FDSKVP---SL-------KGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVK--  317 (573)
Q Consensus       254 ~~~a~~~l~--G~~vv~~~~lg~~--v~~~~p---~~-------~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~--  317 (573)
                      ++++++.|.  |++|++ +++...  .+...+   .+       .+|...  +....        ....+..|+....  
T Consensus       323 ~~~a~~~L~~~Ga~vv~-v~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~--e~~~~--------~~~~~~~yL~~~~~~  391 (566)
T PRK06565        323 WEAARRALEAAGAEVIE-VDFPLVSNCEGDRPGAPTVFNRGLVSPEFLHD--ELWEL--------SGWAFDDFLRANGDP  391 (566)
T ss_pred             HHHHHHHHHHCCCEEEE-eecCCccccccccccccccccccccchhhhhc--cccch--------hHHHHHHHHHhcCCC
Confidence            999999986  887753 333210  011001   00       011000  00000        0001112221111  


Q ss_pred             -----------------CCCCH----HHHH----HHH--H-h-hc-CCHHHHHHHHHHHHHHHH-HHHhhcC--CCCEEE
Q 008244          318 -----------------PALDP----DISA----EIG--E-M-LE-ISETVIENCKSIRNEMRS-AISSLLK--DDGILV  364 (573)
Q Consensus       318 -----------------~~~~~----~~~~----~~~--~-g-~~-~s~~~~~~a~~~r~~~~~-~~~~~~~--~~DvLl  364 (573)
                                       +..-+    ....    ...  . + .. .....|.++++.++..++ .++++|+  +.|.||
T Consensus       392 ~~~sl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv  471 (566)
T PRK06565        392 KLNRLADVDGPQIFPHDPGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVL  471 (566)
T ss_pred             CCCCHHHhhhhhcccCcccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence                             00001    1100    011  0 1 11 112235556666666665 6777776  568999


Q ss_pred             EcCCCCCCCCCCCCCCChHHH--HH-hhhhhhccc-cccCCceeeecCccC--CCCCceeEEEeccCCcHHHHHHHHHHH
Q 008244          365 TPTTAYPPPKLGGKEMLSEDY--QN-RAFSLLSIA-SVSGCCQVTVPLGYY--DKCPTSVSFIARHGGDRFLLDTVQNMY  438 (573)
Q Consensus       365 ~Pt~~~~ap~~~~~~~~~~~~--~~-~~~~~t~~~-nl~G~PaisvP~g~~--~glPvGlq~~~~~~~d~~ll~~a~~le  438 (573)
                      .|+.+..+|..+.........  ++ .+...+... +++|+|+||||+|+.  .|||+||+|+|+.++|..||++|++||
T Consensus       472 ~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E  551 (566)
T PRK06565        472 FPTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFE  551 (566)
T ss_pred             eCCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHH
Confidence            999999988876543321111  11 112233344 899999999999987  799999999999999999999999999


Q ss_pred             HHHHH
Q 008244          439 ASLQE  443 (573)
Q Consensus       439 ~~l~~  443 (573)
                      ++.+.
T Consensus       552 ~~~~~  556 (566)
T PRK06565        552 ATGSR  556 (566)
T ss_pred             HHhcC
Confidence            86644

>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.5e-67  Score=528.98  Aligned_cols=399  Identities=28%  Similarity=0.342  Sum_probs=287.3

Q ss_pred             hhcCcccceeeccccCCCCCC-------CCCCCCCCCCCceeeeecccccCCccc-CCCchhhhhcCCCCCCChHHHHHH
Q 008244           29 NIKQDFGAFIEKLQLLPPPQP-------LPPKAPHPLTGLSFAVSDLFDIEGYVT-GFGHPEWARTHSAASRTSTVVSTL  100 (573)
Q Consensus        29 ~~~~~~na~~~~~~~~~~~~a-------~~~~~~gpL~Gvp~~vKD~~~~~g~~t-t~Gs~~~~~~~~~~~~da~~v~~L  100 (573)
                      ...+.+|+++......+..++       +.+...+||+||||+|||||+++|.+| ||+|..+..  +.++.||++|++|
T Consensus        46 ~~~~~~~~~i~~~~~~~~~~a~~~~~~~~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~~l~~--~~~p~dAtVV~~L  123 (506)
T KOG1211|consen   46 NKWKPLNAKITVINEEALKQAEEVTRRRKNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASWMLEH--YNPPKDATVVKKL  123 (506)
T ss_pred             hhcccccceeeeccHHHHHHhhhccccccCCCcCCCcCCceEEEeeceecCCccCCchhhhhhcc--CCCccccHHHHHH
Confidence            444455555554433333333       335678999999999999999999999 777777764  5899999999999


Q ss_pred             HhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccc
Q 008244          101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF  180 (573)
Q Consensus       101 ~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~Gl  180 (573)
                      |++|||++|||||+||+|+..+++.+||+|+|||++.+.|||||||||++||++++++|+|||||||+|+||++|||+||
T Consensus       124 ~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v~GGSS~GSA~aVaa~l~~~alGtDTgGSvR~PAa~~gvvG~  203 (506)
T KOG1211|consen  124 REAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRVPGGSSSGSAAAVAAGLCDFALGTDTGGSVRVPAAYCGVVGF  203 (506)
T ss_pred             hhcCceEEccccHHHHhhccccccccCCccCCCCcccccCCCCcchhHHHHHhccchhhccccCCCCccCcHHhcCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc--------------------CCCCceEEEcccch
Q 008244          181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--------------------QRSPRQIIIADDCF  240 (573)
Q Consensus       181 kPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--------------------~~~~~rl~i~~~~~  240 (573)
                      |||+|++|+.|++|++.++|++||+||++.|...+.+++.+.+..+                    ...+.|++|+.++.
T Consensus       204 KPT~G~~Sr~Gvip~~~SlD~vGi~a~tv~D~~~v~~~~~g~d~~d~~t~~~p~~~~~~~~~~~~~~l~~~r~GIp~~~~  283 (506)
T KOG1211|consen  204 KPTYGRVSRFGVIPLSNSLDTVGIFARTVYDAVEVLGAIVGIDELDSTTLAQPAPFPIVLELIGSMDLSGLRIGIPKERL  283 (506)
T ss_pred             ccCcceecccccchhhhcccccchhhcccchhHHHhhhhcCCCccCcccccCCcccccchhhcccccccccccCceeecc
Confidence            9999999999999999999999999999999998888765533211                    23345666666554


Q ss_pred             hhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHH---------hhh
Q 008244          241 ELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFK---------NNH  309 (573)
Q Consensus       241 ~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~---------~~~  309 (573)
                      ...  .+..+.+.+++..+++.  |..+. ...+..........  ....    ..+..+.+.++...         ...
T Consensus       284 ~~~--~~~~v~~~~~~~~~~l~~~~~~~~-~~~lp~~~~~~~~~--~~~s----~~ea~s~laryd~~~~~~r~~~~~~~  354 (506)
T KOG1211|consen  284 VQG--LSSGVLSLWEELADLLGSLGAKVN-EVSLPTTINGLCGY--SLSS----ASEAASNLARYDGILYGHRRDFKVAD  354 (506)
T ss_pred             ccc--ccHHHHHHHHHHHHHhhcccccce-eeecchhhhccccc--cccc----hhhhhhhHHHHHHHHhhcchhhhhcc
Confidence            322  24577777777776664  44331 12222221111100  0000    11222233332221         111


Q ss_pred             HHHHHh-hCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHH---hhcCCCCEEEEcCCCCCCCCCCCCCC
Q 008244          310 NEWIES-VKPALDPDISAEIGEMLEI-----SETVIENCKSIRNEMRSAIS---SLLKDDGILVTPTTAYPPPKLGGKEM  380 (573)
Q Consensus       310 ~~~~~~-~~~~~~~~~~~~~~~g~~~-----s~~~~~~a~~~r~~~~~~~~---~~~~~~DvLl~Pt~~~~ap~~~~~~~  380 (573)
                      ..++.. +...+..++..++..+.-+     ....+.++++.|......+.   ..+++.|+|++||.|.+.+..... .
T Consensus       355 ~~v~~~~rs~~~n~~v~~~i~~g~~~l~~~~~~~~f~~a~~~rr~i~~~~~~~~~~~~~vD~l~~pt~~~~~~~~~~~-~  433 (506)
T KOG1211|consen  355 EEVYALSRSFGFNFEVKGRILSGNYILAKENDQDYFEKALEVRRLIQEDFNRRKAALEGVDYLVTPTAPPPLYREFEK-E  433 (506)
T ss_pred             ceeeeeccccccchhhcceeeccceehhhhhhHHHHHHHHHHHHHHHHhhhhcccccccCCeeeccCCCCcchhhhhh-c
Confidence            122211 1223444555555544322     33445778888888888877   788999999999944333332221 1


Q ss_pred             ChHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008244          381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (573)
Q Consensus       381 ~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~  439 (573)
                      ...........+|.++|++|+|+|+||+|.. +|+|+|+|+++..++|..++.++.++++
T Consensus       434 ~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi~g~~~~e~~~~~l~~~~~~  493 (506)
T KOG1211|consen  434 TLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQIMGGAFAEPTLIDLALAIGQ  493 (506)
T ss_pred             ccccccccccceeecccccCCCceEEeeeecCCCCceEEEeecccccchHHHHHHHhhcc
Confidence            1111111223479999999999999999998 9999999999999999999999888775

>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-62  Score=497.39  Aligned_cols=414  Identities=22%  Similarity=0.262  Sum_probs=300.5

Q ss_pred             hhHHHHhhhhhhHHHHHHH-----H----hh--hhcCcccceeeccccCCCCCCCC-------CCCCCCCCCceeeeecc
Q 008244            7 NLWVLLGLGLAGILLMTKK-----L----KK--NIKQDFGAFIEKLQLLPPPQPLP-------PKAPHPLTGLSFAVSDL   68 (573)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~~-----~----~~--~~~~~~na~~~~~~~~~~~~a~~-------~~~~gpL~Gvp~~vKD~   68 (573)
                      .+..+|+++|++.++.+|.     +    +|  .+|+.+||+++..++++...++.       ....+||+||||+|||+
T Consensus        51 ~il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~  130 (560)
T KOG1212|consen   51 AILKLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKES  130 (560)
T ss_pred             HHhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhh
Confidence            3567889999999888884     2    33  88999999999998877665532       22568999999999999


Q ss_pred             cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (573)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa  148 (573)
                      |.++|+.+|.|......  .+++.|+.+|+.||++|||++.+||.||..++..+.|+.||+|.||||.+|+|||||||+|
T Consensus       131 ~~vkg~d~T~G~~~~~~--~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGEa  208 (560)
T KOG1212|consen  131 ISVKGYDSTAGLLARTN--QPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGEA  208 (560)
T ss_pred             eeecCccccchhhhccC--CCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHHH
Confidence            99999999999987654  5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCC----CCCcccccccCHHHHHHHHHHhcCCCc
Q 008244          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRHVGHVLLQLPF  224 (573)
Q Consensus       149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~----~~d~~G~~ar~~~d~~~v~~~~~~~~~  224 (573)
                      |++++|.++||+|||.||||||||+|||++|+|||.+|+|..|..|..+    .+-..|||+|+++|+..++..+.+...
T Consensus       209 ALigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~~L~~~i~~~~  288 (560)
T KOG1212|consen  209 ALLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRLMIGDSG  288 (560)
T ss_pred             HHHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999999999999999999876543    345789999999999999987765331


Q ss_pred             c---cC------------CCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhh
Q 008244          225 A---AQ------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFH  287 (573)
Q Consensus       225 ~---~~------------~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~  287 (573)
                      .   ++            .....+++.....+....+.+...+++.+.++.+.  |+++++ ..        .|.+...+
T Consensus       289 ~~~~~p~~~p~~~~~~~y~~~~~~~ig~~~~dg~~~~~pa~~RAv~~~~~~l~~~g~~~~~-f~--------~~~~~~~~  359 (560)
T KOG1212|consen  289 PKLLDPYPVPVKFMEVFYKSSDKLVIGYYVDDGFFDPSPAMQRAVQETIDLLEKAGHEVVP-FD--------LPDLKHVA  359 (560)
T ss_pred             ccccCCCCCCchhhhhhhhccCCccceEEecCCCCCcCHHHHHHHHHHHHHHHhcCcceeE-ec--------CCcchHHH
Confidence            0   10            01112222221112233457788888888876665  777643 11        22222111


Q ss_pred             hhhhhHHHHHHHHHHHHHHhhhHHHH--HhhCC---------CCCHHHHH-----------HHHHhhcCCHHHHHHHHHH
Q 008244          288 KTNGELKNVMRLIQRYEFKNNHNEWI--ESVKP---------ALDPDISA-----------EIGEMLEISETVIENCKSI  345 (573)
Q Consensus       288 ~~~~~l~~~~~~~~~~e~~~~~~~~~--~~~~~---------~~~~~~~~-----------~~~~g~~~s~~~~~~a~~~  345 (573)
                      +       .+.. ...+....+...+  .....         .+......           .+.........+..+.+..
T Consensus       360 ~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  431 (560)
T KOG1212|consen  360 D-------MFFR-VMPDDGDYISEMYLLDIGDPTLNLFVKFVELPKVFLGRSLHSYIVLPFCIMDAKNSDTAELRQNYED  431 (560)
T ss_pred             H-------HHHH-HcccccchhhHHhhcccCccccchheeeeeccHHHHhhhhhhhHhHHHHHHhhcccchHHHHHHHHH
Confidence            0       0100 0000000000000  00000         01111111           1122223334444555555


Q ss_pred             HHHHHHHHH--hhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCcc-------------
Q 008244          346 RNEMRSAIS--SLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY-------------  410 (573)
Q Consensus       346 r~~~~~~~~--~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-------------  410 (573)
                      ++.++..+.  ....+.||||||+.|.|||+|+......     ..+.||.+||++|+||.+||++.             
T Consensus       432 ~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~~-----~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~~~  506 (560)
T KOG1212|consen  432 IESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLLV-----NGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYPM  506 (560)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhhc-----cchhHHHHHHhccCCcccccccccchhhhccccccc
Confidence            555555554  4456889999999999999998652211     22458999999999988888763             


Q ss_pred             -------------C-CCCCceeEEEeccCCcHHHHHHHHHHHHHHHHH
Q 008244          411 -------------Y-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQ  444 (573)
Q Consensus       411 -------------~-~glPvGlq~~~~~~~d~~ll~~a~~le~~l~~~  444 (573)
                                   . .|||+|||+++.+++|+.+|++++.+|+.+...
T Consensus       507 ~D~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~gg~  554 (560)
T KOG1212|consen  507 NDKWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGGW  554 (560)
T ss_pred             ccHHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhCCc
Confidence                         1 489999999999999999999999999876543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.71  E-value=4.3e-17  Score=152.88  Aligned_cols=107  Identities=31%  Similarity=0.459  Sum_probs=102.8

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~  537 (573)
                      ++...++.++.+||.+++.++|++|+.+|++||+++|+++.+|+|||.+|.+||+|+.|++||+.||.+||.+ ++|.++
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999999999998 699999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +.++..++.+++|.+.|.+++.++|...
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            9999999999999999999999999754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=3.3e-14  Score=142.67  Aligned_cols=130  Identities=31%  Similarity=0.438  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008244          428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA  507 (573)
Q Consensus       428 ~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~  507 (573)
                      ..++.--...|+++++.....-..+         +.++..++.|+.+|+.|+|..|++.|++||+.+|+++.+|+|||.|
T Consensus       331 ~~~ls~lk~~Ek~~k~~e~~a~~~p---------e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac  401 (539)
T KOG0548|consen  331 PDLLSKLKEAEKALKEAERKAYINP---------EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAAC  401 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCh---------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            4455556666777666655544443         6688889999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          508 YLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       508 ~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      |.+++++.+|+.||+++++++|++ +.+++++.++..+..|.++++.|..+..++|..+|
T Consensus       402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e  461 (539)
T KOG0548|consen  402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE  461 (539)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence            999999999999999999999998 68999999999999999999999999999997655

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=7.8e-13  Score=116.43  Aligned_cols=104  Identities=26%  Similarity=0.375  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLIC  535 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~  535 (573)
                      ..+..++..||.+|+.|+|++|...|+.||++.|.-     ..+|.|||.|+++++.++.|+.+|.+||+|+|.| +++.
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            568889999999999999999999999999999975     5899999999999999999999999999999998 6999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +++.++..++.+++++..|.+-...+|...
T Consensus       173 RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence            999999999999999999999999998654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=3.6e-13  Score=133.35  Aligned_cols=93  Identities=32%  Similarity=0.497  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      +.+..++++||.+|++|+|++||++|++||+++|+.+..|.||+.||..+|+|++.+++|.+||+++|++ +++++|+.+
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA  192 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            5578899999999999999999999999999999999999999999999999999999999999999999 699999999


Q ss_pred             HHHHHHHHHHHHHH
Q 008244          541 ERCLDITRRQLKIF  554 (573)
Q Consensus       541 ~~~~~~~~~al~~~  554 (573)
                      ++.++.+.+++-..
T Consensus       193 ~E~lg~~~eal~D~  206 (606)
T KOG0547|consen  193 HEQLGKFDEALFDV  206 (606)
T ss_pred             HHhhccHHHHHHhh
Confidence            99999999998764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.41  E-value=4.5e-13  Score=126.98  Aligned_cols=103  Identities=35%  Similarity=0.432  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      ...++++||.||++|+|++||+||+++|..+|.++.+|.||+++|+++++|..|..||+.|+.||-.+ ++|-+++.+..
T Consensus        97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~  176 (536)
T KOG4648|consen   97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE  176 (536)
T ss_pred             hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34478999999999999999999999999999999999999999999999999999999999999988 69999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      .++..++|-+.++..+.+.|..-|
T Consensus       177 ~Lg~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  177 SLGNNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             HHhhHHHHHHhHHHHHhhCcccHH
Confidence            999999999999999999997544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.36  E-value=2.5e-12  Score=98.16  Aligned_cols=67  Identities=33%  Similarity=0.502  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCc
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDK  529 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~-~~~~Al~~~~~al~l~p  529 (573)
                      ++..|.++|..+++.++|++|+..|+++|+++|+++.+|+++|.||.++| ++++|+++++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            47889999999999999999999999999999999999999999999999 79999999999999998

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=6.3e-12  Score=122.35  Aligned_cols=106  Identities=25%  Similarity=0.412  Sum_probs=99.8

Q ss_pred             ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-H
Q 008244          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-R  532 (573)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~  532 (573)
                      ...++..+.+++.||.+|++|+|.+|-++|+.+|.++|++    +.+|.|||.++.++|+.++|+.+|++|++|||.+ +
T Consensus       243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik  322 (486)
T KOG0550|consen  243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK  322 (486)
T ss_pred             hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence            3457889999999999999999999999999999999985    7999999999999999999999999999999998 7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          533 LICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       533 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ++.++++++..++.|+++.+.|+++.+....
T Consensus       323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999987654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.3e-11  Score=121.05  Aligned_cols=104  Identities=23%  Similarity=0.284  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---------------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l  527 (573)
                      .+...++.||.+|+.|+|..|+..|.+|+..-...               ..+|+|++.||+|+++|.+|++.|+++|++
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            46778899999999999999999999999764321               388999999999999999999999999999


Q ss_pred             CcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          528 DKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       528 ~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      +|+| +++|++++++..++.++.|...|.++.+++|..++
T Consensus       287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka  326 (397)
T KOG0543|consen  287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA  326 (397)
T ss_pred             CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence            9998 79999999999999999999999999999998654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.28  E-value=2.9e-11  Score=106.67  Aligned_cols=100  Identities=9%  Similarity=0.019  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHH
Q 008244          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLD  545 (573)
Q Consensus       467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~  545 (573)
                      +...|..+++.|+|++|+..|++++.++|.+..+|.++|.++..+|++++|+..|+++++++|++ ..++.++.++..++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            66789999999999999999999999999999999999999999999999999999999999998 58899999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCC
Q 008244          546 ITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       546 ~~~~al~~~~~~~~~~~~~~~  566 (573)
                      ++++|.+.|+.++.++|...+
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~  127 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADAS  127 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChH
Confidence            999999999999999986543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.22  E-value=6.8e-11  Score=102.57  Aligned_cols=102  Identities=11%  Similarity=-0.003  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      ++..+..+..|..+++.|++++|...|+....++|.++.+|+|+|.|+..+|+|++|+..|.+|+.++|++. .++..++
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999999999999999984 8899999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      ++..++..+.|.+.|+.+..+--
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999888764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.22  E-value=5e-11  Score=121.46  Aligned_cols=103  Identities=28%  Similarity=0.374  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERC  543 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~  543 (573)
                      ..+..+|+.++..++|++|++.|+++|+++|+++.+|++||.||+++|++++|+.+++++++++|++. ++++++.++..
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999984 88889999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCC
Q 008244          544 LDITRRQLKIFHMHWSWSPPIKEH  567 (573)
Q Consensus       544 ~~~~~~al~~~~~~~~~~~~~~~~  567 (573)
                      ++.+++|++.|+.+..++|...+.
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~  106 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRF  106 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHH
Confidence            999999999999999999976544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=5.7e-11  Score=119.66  Aligned_cols=102  Identities=31%  Similarity=0.349  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      +..++++||..|..|+|+.|+.+|+++|.++|.+..+|.||+.||.++++|++|++|..+.++++|++ +.|.++|-.+.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999 68889999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +++++++|+..|..-+..+|..+
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~n~  104 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPSNK  104 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCchH
Confidence            99999999999999999998654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.16  E-value=4.3e-10  Score=112.04  Aligned_cols=104  Identities=13%  Similarity=0.035  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      +..+..|+++|..+.+.|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++ .+++.++.
T Consensus        61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  140 (296)
T PRK11189         61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI  140 (296)
T ss_pred             HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            35577888999999999999999999999999999999999999999999999999999999999999988 47788888


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ++...+++++|++.|+++.+.+|..
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            8888899999999999888888854

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=7.6e-11  Score=106.98  Aligned_cols=100  Identities=30%  Similarity=0.409  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      ...++.+.+.|+.+|..++|..||.+|.++|.++|..+.+|.||+.||+++++|+.+..+|++|++++|+. +.+|.++.
T Consensus         7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~   86 (284)
T KOG4642|consen    7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ   86 (284)
T ss_pred             chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence            35588899999999999999999999999999999999999999999999999999999999999999998 68899999


Q ss_pred             HHHHHHHHHHHHHHHhhcccc
Q 008244          540 QERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~  560 (573)
                      .......+.++.+.+.+++++
T Consensus        87 ~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   87 WLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHhhccccHHHHHHHHHHHH
Confidence            999889999999999888654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.12  E-value=1.2e-09  Score=96.39  Aligned_cols=86  Identities=16%  Similarity=0.076  Sum_probs=77.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~  538 (573)
                      +|.....+.++|..+.+.|+|++|+..|+++++++|+++.+|+++|.|+..+|++++|+..|+++++++|++. .+..++
T Consensus        54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            4577999999999999999999999999999999999999999999999999999999999999999999985 555666


Q ss_pred             HHHHHHH
Q 008244          539 QQERCLD  545 (573)
Q Consensus       539 ~~~~~~~  545 (573)
                      .+...++
T Consensus       134 ~~~~~l~  140 (144)
T PRK15359        134 NAQIMVD  140 (144)
T ss_pred             HHHHHHH
Confidence            6665544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.10  E-value=8e-10  Score=96.55  Aligned_cols=108  Identities=16%  Similarity=0.112  Sum_probs=99.8

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~  537 (573)
                      .+|+.......+|..+++.|++++|++.|+++++.+|++..+|.++|.+|.+++++++|+..++++++++|++ ..++.+
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            3456678899999999999999999999999999999999999999999999999999999999999999998 478888


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      +.++...+++++|++.|....++.|...+
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        92 AECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            99999999999999999999999986544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.10  E-value=3.4e-10  Score=115.27  Aligned_cols=107  Identities=17%  Similarity=0.139  Sum_probs=96.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      .|..+..+.++|..|-++|++++|+.+|+++|.++|..+.+|.|+|..|-.+|+..+|+++|.+|+.++|.+ .++..++
T Consensus       384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa  463 (966)
T KOG4626|consen  384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA  463 (966)
T ss_pred             ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence            457788889999999999999999999999999999999999999999999999999999999999999998 4888888


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      .+++--+...+|+..|+.+++++|..++
T Consensus       464 si~kDsGni~~AI~sY~~aLklkPDfpd  491 (966)
T KOG4626|consen  464 SIYKDSGNIPEAIQSYRTALKLKPDFPD  491 (966)
T ss_pred             HHhhccCCcHHHHHHHHHHHccCCCCch
Confidence            8888889999999999999999997665

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.09  E-value=1.7e-09  Score=100.64  Aligned_cols=105  Identities=19%  Similarity=0.215  Sum_probs=97.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCcCc-HHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY-LESGS--FLQAEADCTKAINLDKKV-RLIC  535 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~-~~l~~--~~~Al~~~~~al~l~p~~-~~~~  535 (573)
                      +|++.+.|..+|..+...|++++|+.+|+++++++|+++.++.++|.++ ...|+  +++|.+.++++++++|++ .+++
T Consensus        69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~  148 (198)
T PRK10370         69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM  148 (198)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence            3477999999999999999999999999999999999999999999985 67787  599999999999999998 4888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .+|..+...+++++|.+.|++..+++|+-
T Consensus       149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        149 LLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            99999999999999999999999998873

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.08  E-value=2.2e-10  Score=116.70  Aligned_cols=104  Identities=19%  Similarity=0.132  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      ..+..+-++|.+|+++|..+-||.+|+++|+++|+.+.+|+|+|+++-..|+..||+.+|.+||.++|++. +.+.++.+
T Consensus       284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni  363 (966)
T KOG4626|consen  284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI  363 (966)
T ss_pred             cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            66777888888888888888888888888888888888888888888888888888888888888888874 77888888


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +..++.+++|.+.|++++...|...
T Consensus       364 ~~E~~~~e~A~~ly~~al~v~p~~a  388 (966)
T KOG4626|consen  364 YREQGKIEEATRLYLKALEVFPEFA  388 (966)
T ss_pred             HHHhccchHHHHHHHHHHhhChhhh
Confidence            8888888888888888888877644

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.1e-09  Score=104.12  Aligned_cols=97  Identities=31%  Similarity=0.387  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICA  536 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~  536 (573)
                      +.++-+++.||.||+.++|..|+++|+++|+..-.    ++.+|.|||.|.+.+|+|..|+.||.+|++++|.+ +++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            57899999999999999999999999999998644    47999999999999999999999999999999998 68889


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Q 008244          537 EAQQERCLDITRRQLKIFHMHW  558 (573)
Q Consensus       537 ~~~~~~~~~~~~~al~~~~~~~  558 (573)
                      -++++..++.+.+++..-+...
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~  180 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGL  180 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhh
Confidence            8999999998766666555443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.02  E-value=9.8e-10  Score=82.56  Aligned_cols=64  Identities=19%  Similarity=0.266  Sum_probs=60.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      +.+|..+++.|+|++|+..|+++++.+|+++.+|+.+|.|+..+|++++|+..|+++++++|++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            3689999999999999999999999999999999999999999999999999999999999986

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=3.2e-09  Score=100.35  Aligned_cols=94  Identities=15%  Similarity=0.162  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008244          432 DTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES  511 (573)
Q Consensus       432 ~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l  511 (573)
                      .-...|++++..+..++...+         +++..|.+++.+|.+.|.|+.|++.+..||++||....+|..+|.+|+.+
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P---------~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDP---------TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCC---------CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence            344567777777777776665         88999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCcCcHHH
Q 008244          512 GSFLQAEADCTKAINLDKKVRLI  534 (573)
Q Consensus       512 ~~~~~Al~~~~~al~l~p~~~~~  534 (573)
                      |+|++|++.|++||+++|++..+
T Consensus       163 gk~~~A~~aykKaLeldP~Ne~~  185 (304)
T KOG0553|consen  163 GKYEEAIEAYKKALELDPDNESY  185 (304)
T ss_pred             CcHHHHHHHHHhhhccCCCcHHH
Confidence            99999999999999999999633

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.99  E-value=2.3e-09  Score=118.28  Aligned_cols=98  Identities=32%  Similarity=0.395  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      +.+..++++|+.+++.|+|++|++.|+++|++.|+ +..|.|+|.||+++|+|++|+.+|+++++++|++ +++++++.+
T Consensus       125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a  203 (615)
T TIGR00990       125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA  203 (615)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            34678899999999999999999999999999996 7899999999999999999999999999999998 599999999


Q ss_pred             HHHHHHHHHHHHHHhhcccc
Q 008244          541 ERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~  560 (573)
                      +..++.+++|+..|.....+
T Consensus       204 ~~~lg~~~eA~~~~~~~~~~  223 (615)
T TIGR00990       204 YDGLGKYADALLDLTASCII  223 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            99999999999888655433

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.7e-09  Score=98.55  Aligned_cols=104  Identities=13%  Similarity=0.186  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCC----------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGN----------NATYYSNRAAAYLESGSFLQAEADCT  522 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~----------~~~~~~n~a~~~~~l~~~~~Al~~~~  522 (573)
                      -+....+.++||.+|++|+|++|..+|..||..        .|.          ...++.|.++|+++.++|.++++.|.
T Consensus       175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s  254 (329)
T KOG0545|consen  175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS  254 (329)
T ss_pred             hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence            345678899999999999999999999999842        233          35899999999999999999999999


Q ss_pred             HHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          523 KAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       523 ~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ..|+.+|.+ +++|++++++...=...+|-+.|...+.++|+.
T Consensus       255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            999999998 799999999998866777888888888888764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.97  E-value=2.1e-09  Score=102.54  Aligned_cols=107  Identities=18%  Similarity=0.131  Sum_probs=101.3

Q ss_pred             CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHH
Q 008244          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LIC  535 (573)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~  535 (573)
                      +..++..++.+.++|+.++-.++|..|+..|..||+.+|++..+++.||.+|+.+|+-+.|+.|+.++|++.|++. +..
T Consensus        31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi  110 (504)
T KOG0624|consen   31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI  110 (504)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence            3456788999999999999999999999999999999999999999999999999999999999999999999996 888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .++.++..++.+++|...|..-++.+|.
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~~s  138 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHEPS  138 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcCCC
Confidence            8999999999999999999999998884

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.94  E-value=6.6e-10  Score=111.28  Aligned_cols=101  Identities=34%  Similarity=0.379  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQE  541 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~  541 (573)
                      .++.+.++++.+++.++|+.|+..|++||+++|+.+.+|.||+.++++.++|..|+.|+.+|++++|.+ ++|+++|.+.
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            367788999999999999999999999999999999999999999999999999999999999999998 7999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ..++.+.+|+..|+.-..+.|.
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pn  104 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPN  104 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcC
Confidence            9999999999999998888885

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.92  E-value=1.1e-08  Score=101.90  Aligned_cols=100  Identities=12%  Similarity=0.044  Sum_probs=83.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQ  539 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~  539 (573)
                      +|+.+..+..+|..+...|+|++|++.|+++++++|++..+|.|+|.+++..|++++|+++|+++++++|++........
T Consensus        94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~  173 (296)
T PRK11189         94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLY  173 (296)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999852111122


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 008244          540 QERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~  559 (573)
                      .....+..++|+..|.....
T Consensus       174 l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        174 LAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHccCCHHHHHHHHHHHHh
Confidence            23334567888888865443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.91  E-value=5e-09  Score=106.76  Aligned_cols=129  Identities=11%  Similarity=0.088  Sum_probs=111.4

Q ss_pred             eccCCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 008244          422 ARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY  501 (573)
Q Consensus       422 ~~~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~  501 (573)
                      ...-+...+.++...|.++.+....              ...++.+.-+|..|+-.++|+.|++||+.||..+|++..+|
T Consensus       402 ~s~~~~~~l~~i~~~fLeaa~~~~~--------------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lW  467 (579)
T KOG1125|consen  402 KSFLDSSHLAHIQELFLEAARQLPT--------------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLW  467 (579)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhCCC--------------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHH
Confidence            4445566777777776654443221              13367788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          502 SNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       502 ~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +.+|..+..-.+.+||+..|++||+|.|.| ++.|.+|..+..++.|++|.++|-.++.+.+..
T Consensus       468 NRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks  531 (579)
T KOG1125|consen  468 NRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS  531 (579)
T ss_pred             HHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence            999999999999999999999999999999 599999999999999999999999999988763

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.91  E-value=6.8e-09  Score=104.60  Aligned_cols=78  Identities=19%  Similarity=0.143  Sum_probs=71.4

Q ss_pred             CCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc
Q 008244          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINL-DK  529 (573)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~---~~n~a~~~~~l~~~~~Al~~~~~al~l-~p  529 (573)
                      ......+|+.+..++++|..|++.|+|++|+.+|+++|+++|++..+   |+|+|.||.++|++++|++++++|+++ ++
T Consensus        65 ~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~  144 (453)
T PLN03098         65 KDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL  144 (453)
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch
Confidence            44556789999999999999999999999999999999999999855   999999999999999999999999998 44


Q ss_pred             Cc
Q 008244          530 KV  531 (573)
Q Consensus       530 ~~  531 (573)
                      .+
T Consensus       145 ~f  146 (453)
T PLN03098        145 KF  146 (453)
T ss_pred             hH
Confidence            44

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.90  E-value=9.6e-09  Score=84.55  Aligned_cols=102  Identities=19%  Similarity=0.127  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-----RLICAE  537 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-----~~~~~~  537 (573)
                      ....+-.+|..+...|+.+.|++.|.++|.+.|..+.+|+||+++|...|+.++|+.|.++|+++...-     .++..+
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR  121 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR  121 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            355666789999999999999999999999999999999999999999999999999999999998543     488889


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +.+++.++.-+.|-..|+.+.++-.+.
T Consensus       122 g~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  122 GLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            999999999999999999988776543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.87  E-value=3.9e-08  Score=78.72  Aligned_cols=97  Identities=27%  Similarity=0.339  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH
Q 008244          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCL  544 (573)
Q Consensus       466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~  544 (573)
                      .+.++|..+++.|++++|+..++++++..|++..+++++|.++...+++++|++.+++++++.|.+. .++..+.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999999885 778888999999


Q ss_pred             HHHHHHHHHHhhccccCC
Q 008244          545 DITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       545 ~~~~~al~~~~~~~~~~~  562 (573)
                      +.++++.+.|.......|
T Consensus        82 ~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          82 GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HhHHHHHHHHHHHHccCC
Confidence            999999999998887766

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.85  E-value=2.8e-08  Score=90.49  Aligned_cols=102  Identities=12%  Similarity=0.058  Sum_probs=88.2

Q ss_pred             ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHH
Q 008244          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICA  536 (573)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~  536 (573)
                      .+....++...++|..|++.|++..|.+.+++||+++|++..+|.-||..|.++|+.+.|-+.|++|++++|++ ..+..
T Consensus        29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN  108 (250)
T COG3063          29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN  108 (250)
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence            34446678889999999999999999999999999999999999999999999999999999999999999997 46666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccc
Q 008244          537 EAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       537 ~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                      .+-.+...+.++++.+.|+++..
T Consensus       109 YG~FLC~qg~~~eA~q~F~~Al~  131 (250)
T COG3063         109 YGAFLCAQGRPEEAMQQFERALA  131 (250)
T ss_pred             hhHHHHhCCChHHHHHHHHHHHh
Confidence            67667777788888888887764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.85  E-value=2.5e-08  Score=110.11  Aligned_cols=103  Identities=9%  Similarity=0.030  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      |+.+..+..+|..++..|+|++|+.+|+++++++|++..+|.++|.++.++|++++|+..|+++++++|++. .+..++.
T Consensus       396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~  475 (615)
T TIGR00990       396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE  475 (615)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            344556666666666666666666666666666666666666666666666666666666666666666653 5555666


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ++..++.+++|++.|+++..++|.
T Consensus       476 ~~~~~g~~~~A~~~~~~Al~l~p~  499 (615)
T TIGR00990       476 LLLDQNKFDEAIEKFDTAIELEKE  499 (615)
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCc
Confidence            666667777777777777776664

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.83  E-value=8.7e-09  Score=106.66  Aligned_cols=103  Identities=17%  Similarity=0.025  Sum_probs=62.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~  538 (573)
                      ++.+-.+|+-+|.+|+++++|+.|.-.|++|++++|.+....+..|..+.++|+.++|++.+++|+.+||.+. ..|.++
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            3455556666666666666666666666666666666666666666666666666666666666666666653 455556


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      .++..++++.+|++.++.--.+-|
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~vP  588 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELVP  588 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhCc
Confidence            666666666666666665444444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.83  E-value=3.9e-08  Score=83.46  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLICA  536 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~~~  536 (573)
                      ++.+++.|..++++|+|++|++.|.++++.+|++   ..+++++|.++++.+++++|+..|+++++.+|++    ..++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678899999999999999999999999999876   6789999999999999999999999999999885    37888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          537 EAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       537 ~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .+.++..++.++++++.|.......|..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            8999999999999999999988887753

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.81  E-value=3.7e-08  Score=85.68  Aligned_cols=81  Identities=16%  Similarity=0.147  Sum_probs=72.1

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKVRLIC  535 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~---p~~~~~~  535 (573)
                      -+|.++.-|.++|.++-.+|+|++||++|.+|+.++|+++..++|.|.||+++|+.++|.+.|+.|+.+.   |.+..+.
T Consensus        64 ~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~  143 (157)
T PRK15363         64 YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILR  143 (157)
T ss_pred             hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence            3457799999999999999999999999999999999999999999999999999999999999999987   4444444


Q ss_pred             HHHH
Q 008244          536 AEAQ  539 (573)
Q Consensus       536 ~~~~  539 (573)
                      .+++
T Consensus       144 ~~A~  147 (157)
T PRK15363        144 QRAE  147 (157)
T ss_pred             HHHH
Confidence            4443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.81  E-value=5.6e-08  Score=88.70  Aligned_cols=105  Identities=18%  Similarity=0.194  Sum_probs=87.3

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LI  534 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~  534 (573)
                      .++..+..++.+|..+...|+|++|+.+|++++++.|+.   ..++.++|.+|.++|++++|+..++++++++|++. .+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            356778899999999999999999999999999987763   57999999999999999999999999999999873 44


Q ss_pred             HHHHHHHHH--------------HHHHHHHHHHHhhccccCCC
Q 008244          535 CAEAQQERC--------------LDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       535 ~~~~~~~~~--------------~~~~~~al~~~~~~~~~~~~  563 (573)
                      ..++.++..              +..++++++.+.....++|.
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence            444444433              34477888888888887775

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.79  E-value=6.8e-08  Score=109.82  Aligned_cols=103  Identities=10%  Similarity=0.016  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      |+.+..+.++|..+.+.|++++|+..|+++++++|+++.+++|+|.+|..+|++++|+.+|+++++++|++ ......++
T Consensus       640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~  719 (987)
T PRK09782        640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPE  719 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhH
Confidence            35566777777777777777777777777777777777777777777777777777777777777777776 35556666


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +......++.+.+.+.++|.++|.
T Consensus       720 ~~~~~~~~~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        720 QNQQRFNFRRLHEEVGRRWTFSFD  743 (987)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcc
Confidence            666667777777777777777663

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.78  E-value=3.4e-08  Score=75.99  Aligned_cols=62  Identities=16%  Similarity=0.312  Sum_probs=59.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       471 g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      ...++++++|++|+++++++++++|+++..|..+|.||+++|+|++|+++++++++++|+..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            46789999999999999999999999999999999999999999999999999999999875

>PRK12370 invasion protein regulator; Provisional

Probab=98.78  E-value=7.2e-08  Score=104.76  Aligned_cols=101  Identities=9%  Similarity=-0.026  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      |+.+..+..+|..+...|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..++++++++|.+. ..+.++.
T Consensus       335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~  414 (553)
T PRK12370        335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW  414 (553)
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            466888999999999999999999999999999999999999999999999999999999999999999974 3444555


Q ss_pred             HHHHHHHHHHHHHHHhhccccC
Q 008244          540 QERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~  561 (573)
                      .+...+.+++|++.+.+....+
T Consensus       415 ~~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        415 ITYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             HHHhccCHHHHHHHHHHHHHhc
Confidence            5666788899999988877654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=4.8e-09  Score=108.58  Aligned_cols=105  Identities=19%  Similarity=0.248  Sum_probs=89.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----------------------------------CHHHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----------------------------------NATYYSNRA  505 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----------------------------------~~~~~~n~a  505 (573)
                      ++..++.|+..||.+.-+++++.||++|++||+++|+                                  +..+||-+|
T Consensus       417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG  496 (638)
T KOG1126|consen  417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG  496 (638)
T ss_pred             CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence            3455777888888888888888888888888877664                                  358999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          506 AAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       506 ~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ++|+|.++++.|+-+|++|+++||.+. ..+..+..+..++..++||+.|+++..++|..
T Consensus       497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999985 77777899999999999999999999999853

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.75  E-value=3.3e-08  Score=75.18  Aligned_cols=67  Identities=21%  Similarity=0.204  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHH-HHHHHHHHHhhccccCC
Q 008244          496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLD-ITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       496 ~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~-~~~~al~~~~~~~~~~~  562 (573)
                      +++..|.++|.+++..++|++|+.+|+++++++|++. .++.++.++..++ .+++|++.|+++.+++|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3678999999999999999999999999999999984 9999999999998 89999999999999987

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.75  E-value=1e-07  Score=108.43  Aligned_cols=102  Identities=18%  Similarity=0.047  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~  542 (573)
                      ...+.++|..+.+.|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++. +++.++.++.
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999999999999985 8899999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      .++++++|++.|+++..++|...
T Consensus       689 ~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        689 RLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999998543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1e-07  Score=94.08  Aligned_cols=97  Identities=18%  Similarity=0.215  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH-HHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLI-CAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~-~~~~~~~~  542 (573)
                      ...+.|++.++.+.++|.+|+.+++++|+++|+|..++|+||.||+.+++|+.|+.+|++|++++|+|++. ..+..+..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44578999999999999999999999999999999999999999999999999999999999999999633 22333333


Q ss_pred             HH-HHHHHHHHHHhhcccc
Q 008244          543 CL-DITRRQLKIFHMHWSW  560 (573)
Q Consensus       543 ~~-~~~~~al~~~~~~~~~  560 (573)
                      .. ...+..-+.|...+..
T Consensus       337 k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            33 3344445566655543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.74  E-value=2.8e-08  Score=78.83  Aligned_cols=81  Identities=21%  Similarity=0.299  Sum_probs=71.2

Q ss_pred             HcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHH
Q 008244          476 KDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLK  552 (573)
Q Consensus       476 ~~~~~~~Ai~~y~~ai~~~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~  552 (573)
                      .+++|++|+..|+++++.+|.  +..+++++|.||+++|+|++|+..+++ ++.++.+ ...+..|+++..++.+++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  578889999999999999999999999 8888887 577777999999999999999


Q ss_pred             HHhhc
Q 008244          553 IFHMH  557 (573)
Q Consensus       553 ~~~~~  557 (573)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99863

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.73  E-value=1.9e-07  Score=84.84  Aligned_cols=105  Identities=13%  Similarity=0.078  Sum_probs=84.2

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LI  534 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~  534 (573)
                      .....+..+...|..+...++|++|+..|++++.+.|+.   +.+|+|+|.+|..+|++++|+..|+++++++|.+. .+
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~  109 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL  109 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            344678889999999999999999999999999997763   46999999999999999999999999999999862 22


Q ss_pred             HHHHHHH--------------HHHHHHHHHHHHHhhccccCCC
Q 008244          535 CAEAQQE--------------RCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       535 ~~~~~~~--------------~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ..++.++              ..+..+++++..|+++...+|.
T Consensus       110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            3333333              3334555777777788887774

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.72  E-value=1.8e-07  Score=95.51  Aligned_cols=83  Identities=17%  Similarity=0.193  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      ..+..+.++|..+++.|+|++|+..++++|+++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++. ....++.+
T Consensus        34 ~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         34 NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999985 33334444


Q ss_pred             HHHH
Q 008244          541 ERCL  544 (573)
Q Consensus       541 ~~~~  544 (573)
                      ...+
T Consensus       114 ~~kl  117 (356)
T PLN03088        114 DEKI  117 (356)
T ss_pred             HHHH
Confidence            3333

>PRK12370 invasion protein regulator; Provisional

Probab=98.72  E-value=1.3e-07  Score=102.80  Aligned_cols=106  Identities=11%  Similarity=-0.029  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          461 KQSAEIAKEKGNQAY---------KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~---------~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      |+.+..+..+|..+.         ..+++++|+..++++++++|+++.+|..+|.++...|++++|+..|++|++++|++
T Consensus       292 P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~  371 (553)
T PRK12370        292 PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS  371 (553)
T ss_pred             CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            355677777777654         33558999999999999999999999999999999999999999999999999998


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          532 R-LICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       532 ~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      . +++.++.++...+++++|+..|+++..++|....
T Consensus       372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~  407 (553)
T PRK12370        372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA  407 (553)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence            5 7888899999999999999999999999997543

>PLN02789 farnesyltranstransferase

Probab=98.71  E-value=1.9e-07  Score=93.19  Aligned_cols=105  Identities=12%  Similarity=-0.035  Sum_probs=95.6

Q ss_pred             cChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCcCc-HHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF--LQAEADCTKAINLDKKV-RLI  534 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~-~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~--~~Al~~~~~al~l~p~~-~~~  534 (573)
                      .+|+....|..++..+.+.+ ++++|+..++++|+.+|++..+|++|+.++.++++.  ++++..++++++++|++ .+.
T Consensus        66 lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW  145 (320)
T PLN02789         66 LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAW  145 (320)
T ss_pred             HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHH
Confidence            35588999999999999998 689999999999999999999999999999999974  78899999999999998 588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          535 CAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       535 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ..++-+...++.++++++.+++..+.+|.
T Consensus       146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~  174 (320)
T PLN02789        146 SHRQWVLRTLGGWEDELEYCHQLLEEDVR  174 (320)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence            88999999999999999999999887764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.68  E-value=7.6e-08  Score=72.89  Aligned_cols=59  Identities=22%  Similarity=0.263  Sum_probs=55.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       474 ~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +++.|+|++|++.|+++++.+|++..+++.++.||++.|++++|.+.++++++.+|++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~   59 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP   59 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence            46889999999999999999999999999999999999999999999999999999974

...

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=4.2e-07  Score=90.46  Aligned_cols=103  Identities=17%  Similarity=0.075  Sum_probs=89.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~  538 (573)
                      ||+-..+|.-.|-.|...++...||++|++||+++|.+..+|+.+|++|.-|+.+.=|+-+|++|+++.|++. .+..+|
T Consensus       360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG  439 (559)
T KOG1155|consen  360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALG  439 (559)
T ss_pred             CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            3467888999999999999999999999999999999999999999999999998889999999999998884 777788


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      +++..+++.++|.++|..+...+-
T Consensus       440 ~CY~kl~~~~eAiKCykrai~~~d  463 (559)
T KOG1155|consen  440 ECYEKLNRLEEAIKCYKRAILLGD  463 (559)
T ss_pred             HHHHHhccHHHHHHHHHHHHhccc
Confidence            888888888888888888876554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.64  E-value=2.6e-07  Score=101.18  Aligned_cols=103  Identities=12%  Similarity=-0.103  Sum_probs=96.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      .|+...++.+.+..+.+++++++|+..++++++.+|+++.+++++|.|+.++|+|++|+..|++++..+|++ .++..++
T Consensus       116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a  195 (694)
T PRK15179        116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWA  195 (694)
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            348899999999999999999999999999999999999999999999999999999999999999988987 5889999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      ..++..++.++|...|+++.....
T Consensus       196 ~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        196 QSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhhC
Confidence            999999999999999999887553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.63  E-value=5.9e-07  Score=78.27  Aligned_cols=73  Identities=18%  Similarity=0.066  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRL  533 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~  533 (573)
                      |.....+..+|..+++.|+|++|+..|+++++.+|+++..++++|.||..+|++++|+..++++++++|++..
T Consensus        48 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        48 PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            4568899999999999999999999999999999999999999999999999999999999999999999853

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.63  E-value=4.7e-07  Score=87.19  Aligned_cols=106  Identities=17%  Similarity=0.161  Sum_probs=94.1

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH---
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR---  532 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~---~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~---  532 (573)
                      ..+..+..++++|..+++.|+|++|+..|+++++.+|+++   .+++++|.+|++++++++|+..|+++++.+|++.   
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            4456788999999999999999999999999999999876   6889999999999999999999999999999863   


Q ss_pred             -HHHHHHHHHHHH--------HHHHHHHHHHhhccccCCCC
Q 008244          533 -LICAEAQQERCL--------DITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       533 -~~~~~~~~~~~~--------~~~~~al~~~~~~~~~~~~~  564 (573)
                       +++.++.++...        +.+++|.+.|.......|..
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence             577777777654        78999999999999888854

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15331 chaperone protein SicA; Provisional

Probab=98.62  E-value=5.1e-07  Score=78.92  Aligned_cols=127  Identities=13%  Similarity=0.029  Sum_probs=105.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 008244          427 DRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA  506 (573)
Q Consensus       427 d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~  506 (573)
                      +..+-+++..+..++..-.+...      ...-.++..+..+..|..+|++|+|++|...|+-....+|.++.+|..+|.
T Consensus         6 ~~~~~~~~~~i~~al~~G~tlk~------l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa   79 (165)
T PRK15331          6 NVSEERVAEMIWDAVSEGATLKD------VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAA   79 (165)
T ss_pred             hhhHHHHHHHHHHHHHCCCCHHH------HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            34455566666666554322211      112335678889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          507 AYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       507 ~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                      |+..+++|++|+..|..|..++++++ ..+..++++..++..+.|.+.|+.+..
T Consensus        80 ~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331         80 VCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            99999999999999999999998874 778889999999999999999998876

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.62  E-value=6.3e-07  Score=79.65  Aligned_cols=92  Identities=18%  Similarity=0.212  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 008244          437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ  516 (573)
Q Consensus       437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~  516 (573)
                      ++.+...+..++...+.    ......+..|.++|.+++++++++.||+.++++|+++|.+-.++.+||.+|.++..|++
T Consensus       111 yeeA~skY~~Ale~cp~----~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ee  186 (271)
T KOG4234|consen  111 YEEANSKYQEALESCPS----TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEE  186 (271)
T ss_pred             HHHHHHHHHHHHHhCcc----ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHH
Confidence            44444444444444441    12245678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCcCcH
Q 008244          517 AEADCTKAINLDKKVR  532 (573)
Q Consensus       517 Al~~~~~al~l~p~~~  532 (573)
                      |+.||.+.++++|...
T Consensus       187 aleDyKki~E~dPs~~  202 (271)
T KOG4234|consen  187 ALEDYKKILESDPSRR  202 (271)
T ss_pred             HHHHHHHHHHhCcchH
Confidence            9999999999999974

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.61  E-value=5.2e-07  Score=85.81  Aligned_cols=105  Identities=15%  Similarity=0.024  Sum_probs=80.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--Cc-HHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KV-RLICA  536 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p--~~-~~~~~  536 (573)
                      +|.....+..+|..++..|++++|++.|+++++..|++..++.+++.+|...|++++|++.++++++..+  .. ..++.
T Consensus        61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  140 (234)
T TIGR02521        61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN  140 (234)
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence            4555677777888888888888888888888888888888888888888888888888888888887542  22 35666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          537 EAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       537 ~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .+.++...+.++++.+.|.+....+|..
T Consensus       141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       141 AGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            7777777788888888888888777653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=1.9e-07  Score=93.38  Aligned_cols=96  Identities=19%  Similarity=0.101  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHH
Q 008244          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLD  545 (573)
Q Consensus       467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~  545 (573)
                      |..++..|..+++-++-+..|++|.+++|+++..|+.||+.++-+++|++|+.||++++.|+|++ ..+.+++-+...++
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~  442 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH  442 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH
Confidence            55666666666666666666666666666666666666666666666666666666666666665 23333333333333


Q ss_pred             HHHHHHHHHhhccccCC
Q 008244          546 ITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       546 ~~~~al~~~~~~~~~~~  562 (573)
                      .+++..+.|+..-..-|
T Consensus       443 k~~~~m~~Fee~kkkFP  459 (606)
T KOG0547|consen  443 KIAESMKTFEEAKKKFP  459 (606)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            44444444443333333

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.58  E-value=1.5e-08  Score=97.18  Aligned_cols=98  Identities=24%  Similarity=0.264  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      +...+-++...+..|.+++||+.|+.+|+++|..+..|.+|+.+|+++++...|++||+.|+++||+. +-+..++.++.
T Consensus       114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r  193 (377)
T KOG1308|consen  114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER  193 (377)
T ss_pred             HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence            44556677788899999999999999999999999999999999999999999999999999999998 46667889999


Q ss_pred             HHHHHHHHHHHHhhccccC
Q 008244          543 CLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~  561 (573)
                      .++.|+++.++|+.+.+++
T Consensus       194 llg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  194 LLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             HhhchHHHHHHHHHHHhcc
Confidence            9999999999999988765

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.54  E-value=2.5e-07  Score=72.14  Aligned_cols=68  Identities=16%  Similarity=0.261  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~  528 (573)
                      |..+..+.++|..++..|+|++|+..|++++++.       |.-+..++|+|.||..+|++++|++.+++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            5678889999999999999999999999999762       1236899999999999999999999999999874

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.54  E-value=7.3e-07  Score=98.72  Aligned_cols=105  Identities=11%  Similarity=0.004  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      |+.+..+..+|..+.+.|++++|+..|+++++++|+++.++.++|.+|.++|++++|+..|+++++.+|++. .....+.
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~  360 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA  360 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            466788999999999999999999999999999999999999999999999999999999999999999985 4445677


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++...+.+++|++.|+++.+..|...
T Consensus       361 al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        361 ALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            88888999999999999999888643

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.4e-07  Score=92.61  Aligned_cols=100  Identities=33%  Similarity=0.376  Sum_probs=86.0

Q ss_pred             CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHH
Q 008244          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLI  534 (573)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~  534 (573)
                      .+.+....++..+.+|+.++++.+|.+|+..|+.||++.|+++.+|.||+.+|+.+++|++|+-++++.++++|.+ +..
T Consensus        41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~  120 (486)
T KOG0550|consen   41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ  120 (486)
T ss_pred             ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccc
Confidence            3334456788899999999999999999999999999999999999999999999999999999999999999997 466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 008244          535 CAEAQQERCLDITRRQLKIFH  555 (573)
Q Consensus       535 ~~~~~~~~~~~~~~~al~~~~  555 (573)
                      .+.++++..++...++.+.|+
T Consensus       121 ~r~~~c~~a~~~~i~A~~~~~  141 (486)
T KOG0550|consen  121 LREGQCHLALSDLIEAEEKLK  141 (486)
T ss_pred             cchhhhhhhhHHHHHHHHHhh
Confidence            666777777766666665554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.52  E-value=5.9e-07  Score=98.43  Aligned_cols=102  Identities=6%  Similarity=-0.069  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      ++.+..+..+|.+..+.|+|++|...+..+++++|++..++.+++.++.+++++++|+..+++++..+|++. .++.++.
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999999999999999995 8899999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      ++..++++++|...|++...-+|
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p  185 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHP  185 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCC
Confidence            99999999999999999997554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.51  E-value=9.8e-07  Score=97.70  Aligned_cols=104  Identities=13%  Similarity=0.083  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLK----AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LIC  535 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~----Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~  535 (573)
                      |+....+..+|..+++.|++++    |+..|+++++++|+++.++.++|.++.+.|++++|+..++++++++|++. ...
T Consensus       243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~  322 (656)
T PRK15174        243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA  322 (656)
T ss_pred             CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4568888999999999999996    89999999999999999999999999999999999999999999999985 777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .++.++...+++++|++.|+.....+|..
T Consensus       323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        323 MYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            78899999999999999999999888853

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.49  E-value=9.9e-07  Score=82.19  Aligned_cols=104  Identities=13%  Similarity=0.099  Sum_probs=86.5

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      ..++....+..+|...++.|+|.+|+..++++..++|++..+|+-+|.+|.++|++++|-..|.+++++.|+.+ ..-.+
T Consensus        95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNl  174 (257)
T COG5010          95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL  174 (257)
T ss_pred             cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhH
Confidence            44555666777899999999999999999999999999999999999999999999999999999999999874 66667


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      +..+...++++.|.+.+..+....+
T Consensus       175 gms~~L~gd~~~A~~lll~a~l~~~  199 (257)
T COG5010         175 GMSLLLRGDLEDAETLLLPAYLSPA  199 (257)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            7777777888888888776665443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.48  E-value=2.3e-06  Score=81.26  Aligned_cols=103  Identities=15%  Similarity=0.121  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      +.....+.+.|..++..|++++|++.|.++++..  +.....+.++|.++...|++++|+..++++++.+|++. .++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  175 (234)
T TIGR02521        96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL  175 (234)
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence            3445678899999999999999999999999864  55678999999999999999999999999999999874 77788


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +.++...+.+++|.+.|+......|.
T Consensus       176 a~~~~~~~~~~~A~~~~~~~~~~~~~  201 (234)
T TIGR02521       176 AELYYLRGQYKDARAYLERYQQTYNQ  201 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999988877553

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PLN02789 farnesyltranstransferase

Probab=98.47  E-value=3.1e-06  Score=84.54  Aligned_cols=104  Identities=14%  Similarity=0.059  Sum_probs=86.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQW--LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICA  536 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~--~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~  536 (573)
                      +|+..+.|..++..+.+.+++  +++++.++++|+++|++..+|++|+.++..+++|++|+++|+++|++||++. ++..
T Consensus       102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~  181 (320)
T PLN02789        102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQ  181 (320)
T ss_pred             CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHH
Confidence            447888999999999888874  7899999999999999999999999999999999999999999999999984 7777


Q ss_pred             HHHHHHHH---H----HHHHHHHHHhhccccCCC
Q 008244          537 EAQQERCL---D----ITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       537 ~~~~~~~~---~----~~~~al~~~~~~~~~~~~  563 (573)
                      ++.+...+   +    ..++.+....++..++|.
T Consensus       182 R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~  215 (320)
T PLN02789        182 RYFVITRSPLLGGLEAMRDSELKYTIDAILANPR  215 (320)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHhCCC
Confidence            76655433   1    124567777777777774

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=3.2e-06  Score=80.90  Aligned_cols=123  Identities=18%  Similarity=0.098  Sum_probs=105.3

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008244          426 GDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA  505 (573)
Q Consensus       426 ~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a  505 (573)
                      ++...-++...++..++.                +|++++-|.-+|..|++.+++..|...|.+|+++.|+++..+.-.|
T Consensus       134 ~~~~~~~l~a~Le~~L~~----------------nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~a  197 (287)
T COG4235         134 AEQEMEALIARLETHLQQ----------------NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA  197 (287)
T ss_pred             CcccHHHHHHHHHHHHHh----------------CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            344455555666654443                4578999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCC---HHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          506 AAYLESGS---FLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       506 ~~~~~l~~---~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .+++...+   -.++...+++++++||++ .+.+.++......+++.+|...+++..+..|+-
T Consensus       198 eaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         198 EALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            99987653   589999999999999999 588888888888899999999999999988864

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.45  E-value=2e-06  Score=83.38  Aligned_cols=98  Identities=8%  Similarity=-0.064  Sum_probs=67.5

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHH
Q 008244          465 EIAKEKGNQA-YKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLICA  536 (573)
Q Consensus       465 ~~~~~~g~~~-~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~~~  536 (573)
                      ...++.+..+ ++.|+|++|+..|++.|+..|++   +.+++.+|.+|+..|+|++|+..|+++++..|++    .+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3445555554 55677777777777777777776   4677777777777777777777777777777764    36666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          537 EAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       537 ~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      .+.++..++.+++|.+.|+.....-|
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            67777667777777777776665554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.45  E-value=6.5e-07  Score=83.34  Aligned_cols=91  Identities=13%  Similarity=0.057  Sum_probs=80.7

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH-HHHHH--HHHHHH
Q 008244          477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE-RCLDI--TRRQLK  552 (573)
Q Consensus       477 ~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~-~~~~~--~~~al~  552 (573)
                      .++.++++..++++++.+|++..+|.++|.+|..+|++++|+..|+++++++|++. .+...+.++ ...+.  .+++.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            67889999999999999999999999999999999999999999999999999985 777778765 44455  599999


Q ss_pred             HHhhccccCCCCCCC
Q 008244          553 IFHMHWSWSPPIKEH  567 (573)
Q Consensus       553 ~~~~~~~~~~~~~~~  567 (573)
                      .|+++.+.+|...+.
T Consensus       132 ~l~~al~~dP~~~~a  146 (198)
T PRK10370        132 MIDKALALDANEVTA  146 (198)
T ss_pred             HHHHHHHhCCCChhH
Confidence            999999999975543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.44  E-value=1.7e-06  Score=83.35  Aligned_cols=106  Identities=13%  Similarity=0.016  Sum_probs=87.8

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHh
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLES--------GSFLQAEADCTKAINL  527 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~---~~~n~a~~~~~l--------~~~~~Al~~~~~al~l  527 (573)
                      .++.....+..+|..+++.+++++|+..|+++++..|+++.   +++++|.|++++        +++++|++.++++++.
T Consensus        65 ~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  144 (235)
T TIGR03302        65 FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR  144 (235)
T ss_pred             CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence            33445678899999999999999999999999999998765   799999999987        8899999999999999


Q ss_pred             CcCcH----HH--------------HHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          528 DKKVR----LI--------------CAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       528 ~p~~~----~~--------------~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +|++.    +.              +..+..+...+++++|+..|+......|..
T Consensus       145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  199 (235)
T TIGR03302       145 YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT  199 (235)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence            99973    11              234555556688999999999888776643

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.37  E-value=7.3e-07  Score=91.29  Aligned_cols=93  Identities=14%  Similarity=0.149  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008244          429 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY  508 (573)
Q Consensus       429 ~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~  508 (573)
                      .|+.+...|.++......++...|         .+...|+.+|-.+-...++.+||..|++|+++.|....++||+|.+|
T Consensus       438 VLy~ls~efdraiDcf~~AL~v~P---------nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~  508 (579)
T KOG1125|consen  438 VLYNLSGEFDRAVDCFEAALQVKP---------NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC  508 (579)
T ss_pred             HHHhcchHHHHHHHHHHHHHhcCC---------chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence            478888888888887777776666         78999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCcC
Q 008244          509 LESGSFLQAEADCTKAINLDKK  530 (573)
Q Consensus       509 ~~l~~~~~Al~~~~~al~l~p~  530 (573)
                      +.+|.|+||+.+|-.||.+.+.
T Consensus       509 mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  509 MNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999877

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.37  E-value=1.3e-05  Score=68.77  Aligned_cols=100  Identities=16%  Similarity=0.093  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLIC  535 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~~  535 (573)
                      .+..+.+.|...++.|+|++|++.++......|..   ..+.+.++.+|++.++|++|+..+++=++|+|++    .++|
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            47789999999999999999999999999988864   6899999999999999999999999999999997    4888


Q ss_pred             HHHHHHHHHHH---------------HHHHHHHHhhccccCC
Q 008244          536 AEAQQERCLDI---------------TRRQLKIFHMHWSWSP  562 (573)
Q Consensus       536 ~~~~~~~~~~~---------------~~~al~~~~~~~~~~~  562 (573)
                      .+|.....+..               .++|++.|+.-...=|
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP  130 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP  130 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence            88877766655               7788888876665444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.37  E-value=2.8e-06  Score=71.88  Aligned_cols=71  Identities=13%  Similarity=0.072  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      .....++.+|..+++.++|++|+..|+++++..|++   ..+++++|.++.+++++++|+..++++++..|++.
T Consensus        37 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        37 YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            446778999999999999999999999999999885   68899999999999999999999999999999975

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.35  E-value=3.7e-06  Score=95.03  Aligned_cols=102  Identities=14%  Similarity=0.150  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQER  542 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~  542 (573)
                      .+..+...|..+.+.|++++|++.|+++|+++|+++.++.+++.++...|++++|+..++++++.+|++..++.++.++.
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~  127 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYK  127 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35556666666666666666666666666666666666666666666666666666666666666666533555566666


Q ss_pred             HHHHHHHHHHHHhhccccCCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ..+..++|++.|++.....|..
T Consensus       128 ~~g~~~~Al~~l~~al~~~P~~  149 (765)
T PRK10049        128 RAGRHWDELRAMTQALPRAPQT  149 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCC
Confidence            6666666666666666666654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.35  E-value=2.8e-06  Score=77.60  Aligned_cols=103  Identities=13%  Similarity=-0.035  Sum_probs=56.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLIC  535 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~~  535 (573)
                      +|+....|.-++..|.+.|+.+.|-+.|++|++++|++...++|.|--+...|+|++|.+.|++|+.. |.+    ..+-
T Consensus        65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~e  143 (250)
T COG3063          65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLE  143 (250)
T ss_pred             CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhh
Confidence            34555556666666666666666666666666666666555555555555555555555555555542 333    2334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ..+.+....+....+-..|.+++.++|.
T Consensus       144 N~G~Cal~~gq~~~A~~~l~raL~~dp~  171 (250)
T COG3063         144 NLGLCALKAGQFDQAEEYLKRALELDPQ  171 (250)
T ss_pred             hhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence            4444444445555555555555555543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=7.7e-06  Score=81.69  Aligned_cols=103  Identities=13%  Similarity=0.062  Sum_probs=95.9

Q ss_pred             CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHH
Q 008244          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLIC  535 (573)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~  535 (573)
                      .+-+|..-.+|+-+|..|--.+-..=|+-.|++|++..|++...|.-+|.||.++++.++|+++|.+|+...-.+ .+++
T Consensus       391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~  470 (559)
T KOG1155|consen  391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV  470 (559)
T ss_pred             HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999999999999987655 5999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccc
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                      ++|++++.++..++|.+.|++...
T Consensus       471 ~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  471 RLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999998876

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.31  E-value=1e-05  Score=91.47  Aligned_cols=103  Identities=16%  Similarity=-0.071  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      .....+..++..+...|++++|++.++++++..|++..++.++|.++...|++++|++.++++++++|++. ..+.++..
T Consensus       357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~  436 (765)
T PRK10049        357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT  436 (765)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence            44667788999999999999999999999999999999999999999999999999999999999999984 77888888


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ...++++++|.+.++...+..|..
T Consensus       437 al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        437 ALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCC
Confidence            888899999999999988888753

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=2.3e-05  Score=72.63  Aligned_cols=124  Identities=17%  Similarity=0.133  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 008244          430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL  509 (573)
Q Consensus       430 ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~  509 (573)
                      +++.-.....+..-......         ++|.+...++.+-...-.+|+-.+||+..++-++.-++|.++|..++..|+
T Consensus        95 ~lEa~~~~~~A~e~y~~lL~---------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~  165 (289)
T KOG3060|consen   95 LLEATGNYKEAIEYYESLLE---------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL  165 (289)
T ss_pred             HHHHhhchhhHHHHHHHHhc---------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            44444444444444444333         334666677777777788899999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHH-HHHHHHH---HHHHHHHHHHhhccccCC
Q 008244          510 ESGSFLQAEADCTKAINLDKKVRLICAE-AQQERCL---DITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       510 ~l~~~~~Al~~~~~al~l~p~~~~~~~~-~~~~~~~---~~~~~al~~~~~~~~~~~  562 (573)
                      .+++|++|.-++++.+=++|.++.++.+ ++++..+   +.++-+.++|+++.+++|
T Consensus       166 ~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  166 SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            9999999999999999999999755554 6666666   678889999999999998

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.30  E-value=8e-06  Score=84.99  Aligned_cols=100  Identities=13%  Similarity=0.031  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--LICAEAQQE  541 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--~~~~~~~~~  541 (573)
                      ...+..+|..+++.+++++|+..|+++++.+|++..+++.+|.+|.+.|++++|++.++++++++|++.  .+...+.++
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~  259 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY  259 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence            445667777778888888888888888888888777888888888888888888888888888777752  344555666


Q ss_pred             HHHHHHHHHHHHHhhccccCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ...+.+++|.+.|++..+..|.
T Consensus       260 ~~~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        260 QALGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC
Confidence            6667777777777776666653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.30  E-value=5e-06  Score=98.40  Aligned_cols=104  Identities=15%  Similarity=0.048  Sum_probs=93.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~  538 (573)
                      .|.....+..+|..+.+.|++++|++.|+++++++|++..++++++.+|..+|++++|++.++++++.+|++. ....++
T Consensus       599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la  678 (1157)
T PRK11447        599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA  678 (1157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            3455667889999999999999999999999999999999999999999999999999999999999999884 667778


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .++..++++++|.+.|+......|.
T Consensus       679 ~~~~~~g~~~eA~~~~~~al~~~~~  703 (1157)
T PRK11447        679 LAWAALGDTAAAQRTFNRLIPQAKS  703 (1157)
T ss_pred             HHHHhCCCHHHHHHHHHHHhhhCcc
Confidence            8888889999999999998877653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.29  E-value=5.1e-06  Score=98.36  Aligned_cols=103  Identities=13%  Similarity=0.140  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT--------------YYSNRAAAYLESGSFLQAEADCTKAINL  527 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~--------------~~~n~a~~~~~l~~~~~Al~~~~~al~l  527 (573)
                      +.+..+..+|..++++|++++|+..|+++++++|++..              .+.+++.++++.|++++|+..|++++++
T Consensus       301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV  380 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45667777777777778888888888888777776532              2234567777777778888888888777


Q ss_pred             CcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          528 DKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       528 ~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +|++. +++.++.++...+++++|++.|+++.+++|..
T Consensus       381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~  418 (1157)
T PRK11447        381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN  418 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            77763 66667777777777788888887777777653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.29  E-value=3.4e-06  Score=66.75  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a  524 (573)
                      +...+..+|..+++.|+|++|+..+++ ++.++.+...++.+|.|++++|+|++|++.++++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            566788899999999999999999999 9999999899999999999999999999999875

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.27  E-value=9.1e-06  Score=78.17  Aligned_cols=100  Identities=18%  Similarity=0.134  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH
Q 008244          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCL  544 (573)
Q Consensus       466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~  544 (573)
                      .+.++...++..|++..||+..++.|++.|-++.+|..|+.||...|+...|+.|.+.+-+|..++. .+|...+++..+
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            3456667778899999999999999999999999999999999999999999999999999998884 888888999999


Q ss_pred             HHHHHHHHHHhhccccCCCCC
Q 008244          545 DITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       545 ~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +..+.+|......++++|..+
T Consensus       237 gd~~~sL~~iRECLKldpdHK  257 (504)
T KOG0624|consen  237 GDAENSLKEIRECLKLDPDHK  257 (504)
T ss_pred             hhHHHHHHHHHHHHccCcchh
Confidence            999999999999999999654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.26  E-value=1.1e-05  Score=83.85  Aligned_cols=103  Identities=13%  Similarity=0.067  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~  540 (573)
                      .....+..+|..+.+.|++++|++.|+++++.+|.+ ...+..++.+|.+.|++++|+..++++++++|+.......+..
T Consensus       212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~  291 (389)
T PRK11788        212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQL  291 (389)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            345677888999999999999999999999988876 4677888999999999999999999999999987666777888


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +...+.+++|++.|+...+..|..
T Consensus       292 ~~~~g~~~~A~~~l~~~l~~~P~~  315 (389)
T PRK11788        292 LEEQEGPEAAQALLREQLRRHPSL  315 (389)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCcCH
Confidence            888888999999998888887754

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.24  E-value=2.2e-06  Score=54.83  Aligned_cols=34  Identities=29%  Similarity=0.415  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      +.+|+++|.+|+.++++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.24  E-value=1.2e-05  Score=86.44  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=89.4

Q ss_pred             CCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HH
Q 008244          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RL  533 (573)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~  533 (573)
                      +....+|.....|+.+|.+|-++|+.++++.+.-.|--++|++...|...+.-..++|++++|.-+|.+||+.+|.+ +.
T Consensus       164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~  243 (895)
T KOG2076|consen  164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL  243 (895)
T ss_pred             HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH
Confidence            44556777788888888888888888888888888888888888888888888888888888888888888888876 57


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .+.+...+..+|...+|+.-|.+.+++.|+
T Consensus       244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  244 IYERSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence            788888888888888888888888888873

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.22  E-value=2e-05  Score=69.75  Aligned_cols=77  Identities=23%  Similarity=0.163  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDK----------QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-----------FLQAEA  519 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~----------~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~-----------~~~Al~  519 (573)
                      |..++.+.+.|..+....          -+++|+..|++||.++|+...+++++|++|..++.           |++|..
T Consensus        22 P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~  101 (186)
T PF06552_consen   22 PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE  101 (186)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence            366888888888886653          35789999999999999999999999999997654           789999


Q ss_pred             HHHHHHHhCcCcHHHHHH
Q 008244          520 DCTKAINLDKKVRLICAE  537 (573)
Q Consensus       520 ~~~~al~l~p~~~~~~~~  537 (573)
                      +|++|+..+|++..|...
T Consensus       102 ~FqkAv~~~P~ne~Y~ks  119 (186)
T PF06552_consen  102 YFQKAVDEDPNNELYRKS  119 (186)
T ss_dssp             HHHHHHHH-TT-HHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHH
Confidence            999999999998655443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.22  E-value=1.6e-05  Score=84.76  Aligned_cols=103  Identities=15%  Similarity=0.049  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHH----------------------------------
Q 008244          463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRA----------------------------------  505 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~---~~~Ai~~y~~ai~~~p~~~~~~~n~a----------------------------------  505 (573)
                      .+-.++-+|..++...+   +++|+.+|++||+++|+++.+|..++                                  
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            45666778888876654   88999999999999998865444433                                  


Q ss_pred             ----------HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          506 ----------AAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       506 ----------~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                                ..+...|++++|...+++|++++|+..++..+++++...|+.++|...|+++..++|...
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence                      333367899999999999999999877899999999999999999999999999999754

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.20  E-value=3.1e-06  Score=76.35  Aligned_cols=105  Identities=10%  Similarity=0.033  Sum_probs=97.3

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~  537 (573)
                      ++.+.++.++++|+.|-..|=+.-|.-.|++++.+.|+.+..++.+|.-+..-|+|+.|.+.|+..+++||.+ .+...+
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR  139 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  139 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence            3456789999999999999999999999999999999999999999999999999999999999999999998 588999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +....+-++++-|.+.|.+.++-+|.
T Consensus       140 gi~~YY~gR~~LAq~d~~~fYQ~D~~  165 (297)
T COG4785         140 GIALYYGGRYKLAQDDLLAFYQDDPN  165 (297)
T ss_pred             ceeeeecCchHhhHHHHHHHHhcCCC
Confidence            99999999999999999988887774

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.19  E-value=1.2e-05  Score=82.65  Aligned_cols=104  Identities=14%  Similarity=-0.082  Sum_probs=91.9

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-----RL  533 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-----~~  533 (573)
                      ..+.....+...|..+..+|++++|+..|+++++++|++..++..+|.+|+..|++++|+..++++++..|..     ..
T Consensus       109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~  188 (355)
T cd05804         109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN  188 (355)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence            4456677888899999999999999999999999999999999999999999999999999999999998743     24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      ++.++.++...++++++++.|+......|
T Consensus       189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         189 WWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            55788888999999999999998765444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.18  E-value=1.6e-05  Score=70.18  Aligned_cols=98  Identities=12%  Similarity=0.012  Sum_probs=83.0

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--RL  533 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--~~  533 (573)
                      +.+-.......++..++..|+|++|+..|+++++..|+.   ..+.++++.+++..|+|++|+..++..-  ++.+  ..
T Consensus        43 ~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~--~~~~~~~~  120 (145)
T PF09976_consen   43 SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP--DEAFKALA  120 (145)
T ss_pred             CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc--CcchHHHH
Confidence            334557788899999999999999999999999988765   5789999999999999999999997632  2223  47


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHW  558 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~  558 (573)
                      ...+|.++...+.+++|.+.|+.++
T Consensus       121 ~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  121 AELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            7778999999999999999999764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=4.5e-06  Score=85.28  Aligned_cols=103  Identities=17%  Similarity=0.205  Sum_probs=71.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-  532 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-  532 (573)
                      |..+-.+.++|-+.|+.+.|.+|+..|+.+++.-+.       -...+.|+|.+|.++++|++|+.+|+++|.+.|++. 
T Consensus       411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~  490 (611)
T KOG1173|consen  411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS  490 (611)
T ss_pred             CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence            344566677777777777777777777777743221       245677777777777777777777777777777763 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          533 LICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       533 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .+...|.++..++..+.|...||+++-++|.
T Consensus       491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  491 THASIGYIYHLLGNLDKAIDHFHKALALKPD  521 (611)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence            5666667777777777777777777777663

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.16  E-value=2.2e-05  Score=71.54  Aligned_cols=69  Identities=25%  Similarity=0.298  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhC
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--------------FLQAEADCTKAINLD  528 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~--------------~~~Al~~~~~al~l~  528 (573)
                      ....+.++|..+.+.|+|++|+..|+++++..|++...+.++|.+|..+++              +++|++.++++++++
T Consensus        71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603         71 RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence            467899999999999999999999999999999999999999999999988              677888888888888


Q ss_pred             cCc
Q 008244          529 KKV  531 (573)
Q Consensus       529 p~~  531 (573)
                      |++
T Consensus       151 p~~  153 (172)
T PRK02603        151 PNN  153 (172)
T ss_pred             chh
Confidence            886

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.16  E-value=2e-06  Score=54.83  Aligned_cols=34  Identities=47%  Similarity=0.658  Sum_probs=32.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008244          486 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA  519 (573)
Q Consensus       486 ~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~  519 (573)
                      +|++||+++|+++.+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999999999999999999999999963

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.16  E-value=6.4e-06  Score=81.59  Aligned_cols=101  Identities=16%  Similarity=0.077  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      ..+..+...|..+.+.|++++|+..|+++++++|++..++..++.++..+|+++++.+.++...+..|++. .....+.+
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~  223 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA  223 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            45778888999999999999999999999999999877777777777777777666555555555544442 33445666


Q ss_pred             HHHHHHHHHHHHHHhhccccCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      +..+++.++|+..|++..+.+|
T Consensus       224 ~~~lg~~~~Al~~~~~~~~~~p  245 (280)
T PF13429_consen  224 YLQLGRYEEALEYLEKALKLNP  245 (280)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHST
T ss_pred             hccccccccccccccccccccc
Confidence            6666777777777776666655

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.15  E-value=3.4e-05  Score=74.23  Aligned_cols=80  Identities=14%  Similarity=0.121  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLI  534 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~---~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~  534 (573)
                      ..++.++..|..+++.|+|++|++.|++.+...|....+   .+++|.+|+++++|++|+..+++.++++|++    .++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            357778899999999999999999999999999998644   4999999999999999999999999999997    378


Q ss_pred             HHHHHHH
Q 008244          535 CAEAQQE  541 (573)
Q Consensus       535 ~~~~~~~  541 (573)
                      +.++.+.
T Consensus       110 Y~~g~~~  116 (243)
T PRK10866        110 YMRGLTN  116 (243)
T ss_pred             HHHHHhh
Confidence            8888664

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.15  E-value=2.9e-05  Score=65.42  Aligned_cols=93  Identities=15%  Similarity=-0.025  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cH-HHHHH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---VR-LICAE  537 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~---~~-~~~~~  537 (573)
                      ..+++.+..+-..|+.++|+..|+++++...+.   ..++.++|.+|..+|++++|+..+++++.-.|+   +. .....
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467889999999999999999999999976554   578899999999999999999999999998887   32 44445


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 008244          538 AQQERCLDITRRQLKIFHMH  557 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~  557 (573)
                      +.++..+++.+++++.+...
T Consensus        82 Al~L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEA  101 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            66667777777777776543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.11  E-value=3.3e-05  Score=61.28  Aligned_cols=67  Identities=28%  Similarity=0.386  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~  530 (573)
                      ...+...|..+...+++++|++.|+++++..|.+...+.+++.++...+++++|...++++++++|+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          34 ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            4778899999999999999999999999999999999999999999999999999999999998874

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.11  E-value=6.8e-06  Score=83.29  Aligned_cols=69  Identities=12%  Similarity=0.032  Sum_probs=65.0

Q ss_pred             hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244          493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR----LICAEAQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       493 ~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~----~~~~~~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                      .+|+++.+|+|+|.+|+++|+|++|+..|++||+++|++.    +++.++-++..++++++|+.+|.++..+.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999999984    58999999999999999999999999873

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.09  E-value=2.5e-05  Score=87.43  Aligned_cols=105  Identities=15%  Similarity=0.134  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQE  541 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~  541 (573)
                      .....+...|..+..+|+|++|++.|+++++.+|+++.++..++..|..++++++|++.++++++++|++..+..++.+.
T Consensus       100 ~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~  179 (822)
T PRK14574        100 ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLN  179 (822)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence            44566667788999999999999999999999999999999999999999999999999999999999986555556666


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      ...+...+|++.|++....+|...+
T Consensus       180 ~~~~~~~~AL~~~ekll~~~P~n~e  204 (822)
T PRK14574        180 RATDRNYDALQASSEAVRLAPTSEE  204 (822)
T ss_pred             HhcchHHHHHHHHHHHHHhCCCCHH
Confidence            5566676699999999999986544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.07  E-value=8.3e-05  Score=69.67  Aligned_cols=101  Identities=20%  Similarity=0.179  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLI  534 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~  534 (573)
                      ..++.+++.|..+++.|+|.+|++.|++.+...|..   ..+.+.+|.++++.++|.+|+..+++-++..|++    .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            347889999999999999999999999999998875   6899999999999999999999999999999997    377


Q ss_pred             HHHHHHHHHH-----------HHHHHHHHHHhhccccCC
Q 008244          535 CAEAQQERCL-----------DITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       535 ~~~~~~~~~~-----------~~~~~al~~~~~~~~~~~  562 (573)
                      +.++.+...+           ...++|+..|+.-...-|
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP  121 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP  121 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence            7777654333           335577777776655444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.07  E-value=2.5e-05  Score=90.02  Aligned_cols=105  Identities=16%  Similarity=0.037  Sum_probs=86.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~  538 (573)
                      +|+....+..++..+++.|+|++|++.++++++.+|.+..++..+|.+++..|++++|+..|+++++++|++. .++.++
T Consensus       155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~  234 (899)
T TIGR02917       155 DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALA  234 (899)
T ss_pred             CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            3455667888888888888888888888888888888888888888888888888888888888888888874 667777


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .++...+.+++|.+.++...+..|..
T Consensus       235 ~~~~~~g~~~~A~~~~~~~~~~~~~~  260 (899)
T TIGR02917       235 TILIEAGEFEEAEKHADALLKKAPNS  260 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            77777888888888888887777653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.07  E-value=6.5e-05  Score=80.99  Aligned_cols=100  Identities=21%  Similarity=0.169  Sum_probs=87.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV------RL  533 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~------~~  533 (573)
                      +|+..+.|+..+....++|++++|+-||++||+.+|.+..++++|+..|.++|++..|+.-|.++++++|..      ..
T Consensus       203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~  282 (895)
T KOG2076|consen  203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL  282 (895)
T ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence            345568999999999999999999999999999999999999999999999999999999999999999942      24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                      .+..++.....+.-+.|++.++.+++
T Consensus       283 i~~~~~~~~~~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  283 IRRVAHYFITHNERERAAKALEGALS  308 (895)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            44446666666777999999999987

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.06  E-value=3.3e-05  Score=89.06  Aligned_cols=102  Identities=21%  Similarity=0.181  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      |+....+...|..+.+.|++++|++.|+++++.+|+++..+.+++.++.+.++ .+|+..+++++++.|++. ....++.
T Consensus       767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~  845 (899)
T TIGR02917       767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW  845 (899)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence            34567788888888888999999999999999888888888888998888888 789999999988888874 5566778


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ++...+.+++|++.|+++++.+|.
T Consensus       846 ~~~~~g~~~~A~~~~~~a~~~~~~  869 (899)
T TIGR02917       846 LLVEKGEADRALPLLRKAVNIAPE  869 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC
Confidence            888889999999999999998885

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.06  E-value=1.2e-05  Score=79.61  Aligned_cols=100  Identities=15%  Similarity=0.117  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      |++.......+..+...|+++++.+.++...+..|+++.+|..+|.+|+.+|++++|+..++++++.+|++. .+...+.
T Consensus       177 P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~  256 (280)
T PF13429_consen  177 PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD  256 (280)
T ss_dssp             TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence            366778888999999999999988888888888899999999999999999999999999999999999885 7778899


Q ss_pred             HHHHHHHHHHHHHHHhhcccc
Q 008244          540 QERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~  560 (573)
                      ++...|..++|++.+.+.+..
T Consensus       257 ~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  257 ALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHT------------------
T ss_pred             ccccccccccccccccccccc
Confidence            999999999999999988753

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.04  E-value=3.1e-05  Score=82.03  Aligned_cols=112  Identities=20%  Similarity=0.097  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCcCc-HHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA--DCTKAINLDKKV-RLICAE  537 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~--~~~~al~l~p~~-~~~~~~  537 (573)
                      +.-+..|+..|..+..+|++.+|.++|..|+.++|+++.....+|.|+++.|+..-|..  ....++++||.+ .++|..
T Consensus       681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L  760 (799)
T KOG4162|consen  681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL  760 (799)
T ss_pred             hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999887777  999999999998 499999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCCCcccC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPIKEHPFLLI  572 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  572 (573)
                      |++.+.+|..++|..+|..+.++.+..+=.||--|
T Consensus       761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~i  795 (799)
T KOG4162|consen  761 GEVFKKLGDSKQAAECFQAALQLEESNPVLPFSNI  795 (799)
T ss_pred             HHHHHHccchHHHHHHHHHHHhhccCCCccccccc
Confidence            99999999999999999999999998877777443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=2.2e-05  Score=80.37  Aligned_cols=70  Identities=20%  Similarity=0.208  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      ...-.+.++|-.+.+.++|++||.+|+++|.+.|.++.+|...|.||..+|+++.|+++|.++|-++|++
T Consensus       453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            4455688999999999999999999999999999999999999999999999999999999999999998

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.01  E-value=5.6e-05  Score=76.49  Aligned_cols=97  Identities=19%  Similarity=0.025  Sum_probs=80.3

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      +.|+++-.+.-.+.++++.++.++|++.+++++.++|+...++.|+|++|++.|++++|+...++.+.-+|++. .+..+
T Consensus       335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~L  414 (484)
T COG4783         335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLL  414 (484)
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHH
Confidence            34477778888999999999999999999999999999999999999999999999999999999999999984 44444


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 008244          538 AQQERCLDITRRQLKIFH  555 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~  555 (573)
                      ++.+..++...++...+-
T Consensus       415 Aqay~~~g~~~~a~~A~A  432 (484)
T COG4783         415 AQAYAELGNRAEALLARA  432 (484)
T ss_pred             HHHHHHhCchHHHHHHHH
Confidence            555555554444444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.99  E-value=1.3e-05  Score=59.92  Aligned_cols=62  Identities=15%  Similarity=0.072  Sum_probs=57.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          502 SNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       502 ~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +.+|..+++.|+|++|+..|+++++.+|++ .+++.++.++..++++++|+..|+...+.+|.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            468999999999999999999999999998 49999999999999999999999999998885

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.97  E-value=2.2e-05  Score=79.55  Aligned_cols=104  Identities=24%  Similarity=0.220  Sum_probs=92.2

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCc-HHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---GSFLQAEADCTKAINLDKKV-RLI  534 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l---~~~~~Al~~~~~al~l~p~~-~~~  534 (573)
                      +-++.++.++++|+..+-.+....||..|.++++..|....+|.||+.++++.   ++...|+.||..|+++||.. +++
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah  448 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH  448 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence            44678999999999999999999999999999999999999999999999985   47789999999999999997 799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          535 CAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       535 ~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      +++++++..++.+.+|+......-...|
T Consensus       449 ~~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  449 FRLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             HHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence            9999999999999999986544333444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.97  E-value=1.8e-05  Score=50.39  Aligned_cols=34  Identities=26%  Similarity=0.318  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      +.+|+++|.+|+++|+|++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567788888888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.94  E-value=7.7e-05  Score=67.67  Aligned_cols=70  Identities=21%  Similarity=0.143  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------HcCCHHHH-------HHHHHHHHHh
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL-------ESGSFLQA-------EADCTKAINL  527 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~-------~l~~~~~A-------l~~~~~al~l  527 (573)
                      ..+..+.++|..+...|++++|++.|+++++++|.....+.++|.+|.       ++|++++|       +..+++++.+
T Consensus        70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~  149 (168)
T CHL00033         70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL  149 (168)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence            346789999999999999999999999999999999999999999999       78887754       5555567777


Q ss_pred             CcCc
Q 008244          528 DKKV  531 (573)
Q Consensus       528 ~p~~  531 (573)
                      +|++
T Consensus       150 ~p~~  153 (168)
T CHL00033        150 APGN  153 (168)
T ss_pred             Cccc
Confidence            8875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.92  E-value=0.00015  Score=67.87  Aligned_cols=96  Identities=18%  Similarity=0.007  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      |.+.+.|..+|..|.+.|++++|-..|.+++++.|+++.+++|+|+.|+-.|+++.|...+.++...-+.+ .....++.
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl  210 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL  210 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            37799999999999999999999999999999999999999999999999999999999999999888755 46666676


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 008244          540 QERCLDITRRQLKIFHM  556 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~  556 (573)
                      +.-.++++++|-+.-.+
T Consensus       211 ~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         211 VVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHhhcCChHHHHhhccc
Confidence            66666777777665543

>PRK15331 chaperone protein SicA; Provisional

Probab=97.92  E-value=4.3e-05  Score=67.00  Aligned_cols=79  Identities=15%  Similarity=0.001  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQE  541 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~  541 (573)
                      .+..-+..+|.++..+++|++|+..|..+..++++++..++..|.||+.+++.++|+..|..+++ +|.+..+..+++..
T Consensus        69 ~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~  147 (165)
T PRK15331         69 YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVY  147 (165)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence            34667899999999999999999999999999999999999999999999999999999999999 57766655555443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.92  E-value=0.00012  Score=71.03  Aligned_cols=74  Identities=12%  Similarity=0.081  Sum_probs=67.8

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +.+.....++.+|..|+..|+|++|+..|.++++..|++   +.+++++|.+|..+|++++|...|+++++..|+..
T Consensus       175 ~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        175 DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            344557788999999999999999999999999998874   79999999999999999999999999999999975

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.91  E-value=0.00013  Score=69.22  Aligned_cols=96  Identities=14%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHH
Q 008244          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLICAEAQ  539 (573)
Q Consensus       467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~~~~~~  539 (573)
                      .++.+..+++.|+|.+|...|..-|+..|++   +.++|=+|.+++.+|+|++|...|..+++-.|+.    .+++..+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7888889999999999999999999998886   5888889999999999999999999999988887    38888888


Q ss_pred             HHHHHHHHHHHHHHHhhccccCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      +...++..++|-..|..-.+-=|
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYP  246 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCC
Confidence            88888888888888876655433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.85  E-value=0.00031  Score=71.83  Aligned_cols=97  Identities=16%  Similarity=0.027  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH
Q 008244          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCL  544 (573)
Q Consensus       466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~  544 (573)
                      ...-++..+...++-.+|++.++++|+.+|++..++...+..+++.++++.|+..+++++++.|+. ..++.+++++..+
T Consensus       202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~  281 (395)
T PF09295_consen  202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL  281 (395)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence            445578888888999999999999999999999999999999999999999999999999999997 5899999999999


Q ss_pred             HHHHHHHHHHhhccccCC
Q 008244          545 DITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       545 ~~~~~al~~~~~~~~~~~  562 (573)
                      +++++||..+...+.+..
T Consensus       282 ~d~e~ALlaLNs~Pm~~~  299 (395)
T PF09295_consen  282 GDFENALLALNSCPMLTY  299 (395)
T ss_pred             CCHHHHHHHHhcCcCCCC
Confidence            999999999887765543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.85  E-value=9.8e-05  Score=80.23  Aligned_cols=104  Identities=15%  Similarity=0.211  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA  538 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~  538 (573)
                      |+++-.+.-++...|..++|..|+.+|.++|.++|.. +.....+|.|+.++++.+.|+..+.+|++|||.+. ++..++
T Consensus       161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~  240 (1018)
T KOG2002|consen  161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG  240 (1018)
T ss_pred             CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence            4789999999999999999999999999999999974 57778899999999999999999999999999873 666665


Q ss_pred             HHHHHH---HHHHHHHHHHhhccccCCCC
Q 008244          539 QQERCL---DITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       539 ~~~~~~---~~~~~al~~~~~~~~~~~~~  564 (573)
                      ......   ..+..++..+..++..++..
T Consensus       241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~n  269 (1018)
T KOG2002|consen  241 EVDLNFNDSDSYKKGVQLLQRAYKENNEN  269 (1018)
T ss_pred             HHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence            444333   78899999999999988853

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.83  E-value=0.00014  Score=64.51  Aligned_cols=85  Identities=15%  Similarity=0.102  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH----
Q 008244          480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG----------SFLQAEADCTKAINLDKKV-RLICAEAQQERCL----  544 (573)
Q Consensus       480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~----------~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~----  544 (573)
                      |++|.+.|+.....+|.++..++|=|.+++.+.          -+++|+.-|++||.++|+. .++++.|.++..+    
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999999999998763          3578899999999999997 4777776554443    


Q ss_pred             -------HHHHHHHHHHhhccccCCCC
Q 008244          545 -------DITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       545 -------~~~~~al~~~~~~~~~~~~~  564 (573)
                             +.+++|..+|+++...+|..
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                   45889999999999998864

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.81  E-value=8.8e-05  Score=83.16  Aligned_cols=96  Identities=16%  Similarity=-0.012  Sum_probs=56.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHH
Q 008244          469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDIT  547 (573)
Q Consensus       469 ~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~  547 (573)
                      .....+...|++++|+..+++++..+|.....+...|.+|..+|+|++|++.|+++++++|++. .+..++..+...+..
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~  152 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG  152 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence            4445555556666666666666622223333333335577777777777777777777777763 444445555555677


Q ss_pred             HHHHHHHhhccccCCCC
Q 008244          548 RRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       548 ~~al~~~~~~~~~~~~~  564 (573)
                      ++|++.+++..+.+|..
T Consensus       153 ~eAl~~l~~l~~~dp~~  169 (822)
T PRK14574        153 GVVLKQATELAERDPTV  169 (822)
T ss_pred             HHHHHHHHHhcccCcch
Confidence            77777777776666653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.81  E-value=4.9e-05  Score=51.75  Aligned_cols=42  Identities=12%  Similarity=-0.016  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA  506 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~  506 (573)
                      ..+..+|..|.+.|++++|++.|+++|+.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            356677778888888888888888888888888887777764

>PRK11906 transcriptional regulator; Provisional

Probab=97.78  E-value=0.00038  Score=70.96  Aligned_cols=83  Identities=10%  Similarity=-0.062  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244          480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHW  558 (573)
Q Consensus       480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~  558 (573)
                      -.+|.+.-.+|++++|+|+.++..+|.++...++++.|+..|++|+.++|++. .++..+..+...++.++|.+.++++.
T Consensus       320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            34555555555666666666666666655555556666666666666666653 44445555555555556666665555


Q ss_pred             ccCC
Q 008244          559 SWSP  562 (573)
Q Consensus       559 ~~~~  562 (573)
                      +++|
T Consensus       400 rLsP  403 (458)
T PRK11906        400 QLEP  403 (458)
T ss_pred             ccCc
Confidence            5555

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.77  E-value=0.00015  Score=77.44  Aligned_cols=88  Identities=17%  Similarity=0.037  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--LICAEAQQE  541 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--~~~~~~~~~  541 (573)
                      +..+..+|..+..+|++++|...|++|++++| +..+|..+|.++...|++++|++.|++|+.++|.+.  .++..+..+
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f~  498 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVFQ  498 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhcccc
Confidence            56677788888889999999999999999999 589999999999999999999999999999999984  444445666


Q ss_pred             HHHHHHHHHHH
Q 008244          542 RCLDITRRQLK  552 (573)
Q Consensus       542 ~~~~~~~~al~  552 (573)
                      ..++...-++-
T Consensus       499 ~~~~~~~~~~~  509 (517)
T PRK10153        499 TSVETVVPYLY  509 (517)
T ss_pred             ccHHHHHHHHH
Confidence            66666664443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.76  E-value=0.00021  Score=72.49  Aligned_cols=104  Identities=18%  Similarity=0.117  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      .....++-.+..++..+++++|...++..|+..|+|+.++..++.++++.++.++|++.+++++.++|+.. ..+.+++.
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a  383 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA  383 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            55778889999999999999999999999999999999999999999999999999999999999999974 67778999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +...+...++.+.++....-+|..+
T Consensus       384 ll~~g~~~eai~~L~~~~~~~p~dp  408 (484)
T COG4783         384 LLKGGKPQEAIRILNRYLFNDPEDP  408 (484)
T ss_pred             HHhcCChHHHHHHHHHHhhcCCCCc
Confidence            9999999999999998887777543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.0016  Score=62.76  Aligned_cols=102  Identities=8%  Similarity=-0.023  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~  542 (573)
                      .-...+.|..|++.|-+.+|.+.++.+|+..| .++.|..++.+|.+.++...|+..+.+.++.-|.+. .++..+++++
T Consensus       223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence            33446799999999999999999999999886 567778899999999999999999999999999985 7788899999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      .++..+++++.|+...+..|..-|
T Consensus       302 am~~~~~a~~lYk~vlk~~~~nvE  325 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLHPINVE  325 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcCCccce
Confidence            999999999999999998886433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.71  E-value=0.00011  Score=77.51  Aligned_cols=62  Identities=11%  Similarity=0.069  Sum_probs=39.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      .|...+++++|+++.++++.+++++|-....|+++|.|.+++++++.|.++|.+++.++|++
T Consensus       491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~  552 (777)
T KOG1128|consen  491 LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN  552 (777)
T ss_pred             hccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence            33344455666666666666666666666666666666666666666666666666666665

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.71  E-value=6.6e-05  Score=47.81  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN  497 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~  497 (573)
                      +..|.++|..++..++|++|+++|+++|+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.71  E-value=0.00065  Score=57.27  Aligned_cols=97  Identities=13%  Similarity=0.027  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHH
Q 008244          430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAA  506 (573)
Q Consensus       430 ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~---~~~~~~n~a~  506 (573)
                      +++.+..+....++..............-..+.....+.++|..+...|++++|+..+++++...|+   +..+...+++
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            4455555554433332222222212222234456788999999999999999999999999999888   7888899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 008244          507 AYLESGSFLQAEADCTKAIN  526 (573)
Q Consensus       507 ~~~~l~~~~~Al~~~~~al~  526 (573)
                      ++..+|++++|++-+-.++.
T Consensus        84 ~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999988875

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.69  E-value=9.2e-05  Score=80.44  Aligned_cols=106  Identities=16%  Similarity=0.098  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--RLIC  535 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--~~~~  535 (573)
                      +.++..+..+++.+|-.|+|+.++..+..+|...-+.   +..+|++|.+|..+|+|++|..+|.++++.+|++  ..++
T Consensus       267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~  346 (1018)
T KOG2002|consen  267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV  346 (1018)
T ss_pred             CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence            3445555556666666666666666666665544332   3446666666666666666666666666666655  2445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      ..++.+...+.++.+...|++-+..+|...|
T Consensus       347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e  377 (1018)
T KOG2002|consen  347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYE  377 (1018)
T ss_pred             chhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence            5555555556666666666665555554433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.68  E-value=0.00011  Score=46.70  Aligned_cols=34  Identities=29%  Similarity=0.428  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN  497 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~  497 (573)
                      ++.+..+|..+++.|+|++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.67  E-value=0.0004  Score=59.66  Aligned_cols=71  Identities=20%  Similarity=0.223  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCC---------------HHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGS---------------FLQAEADCTK  523 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~---------------~~~Al~~~~~  523 (573)
                      -..++...++..++++++|.+|+..|++-|+++|++   .-+++.+|++++++.+               ..+|+.+|++
T Consensus        45 ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~  124 (142)
T PF13512_consen   45 YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQ  124 (142)
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHH
Confidence            446778899999999999999999999999999987   4889999999999988               8999999999


Q ss_pred             HHHhCcCcH
Q 008244          524 AINLDKKVR  532 (573)
Q Consensus       524 al~l~p~~~  532 (573)
                      .++.-|+..
T Consensus       125 lv~~yP~S~  133 (142)
T PF13512_consen  125 LVRRYPNSE  133 (142)
T ss_pred             HHHHCcCCh
Confidence            999999974

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.67  E-value=0.00016  Score=69.75  Aligned_cols=75  Identities=21%  Similarity=0.203  Sum_probs=69.9

Q ss_pred             ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      .-.|.++..+.+++..|+++++|..|...++.||.++.....+|.+|+.+...+|+..||-+||+.+|+|.|++.
T Consensus       125 a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  125 AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence            344566788899999999999999999999999999999999999999999999999999999999999999974

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.67  E-value=0.00015  Score=76.63  Aligned_cols=110  Identities=13%  Similarity=0.081  Sum_probs=91.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      +|-....|+..|....+.++++.|.++|++++.++|++..+|+|++.+|+++++-.+|...+++|++-+-++ +..-+.-
T Consensus       515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENym  594 (777)
T KOG1128|consen  515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYM  594 (777)
T ss_pred             CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence            445577899999999999999999999999999999999999999999999999999999999999998443 2332333


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCCCc
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPPIKEHPF  569 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  569 (573)
                      .+..-.+.++++++.|++-..++-..++..+
T Consensus       595 lvsvdvge~eda~~A~~rll~~~~~~~d~~v  625 (777)
T KOG1128|consen  595 LVSVDVGEFEDAIKAYHRLLDLRKKYKDDEV  625 (777)
T ss_pred             hhhhhcccHHHHHHHHHHHHHhhhhcccchh
Confidence            3445558899999999988887766554433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.65  E-value=6.4e-05  Score=58.40  Aligned_cols=65  Identities=18%  Similarity=0.191  Sum_probs=54.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cC-c----HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLD---KK-V----RLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       496 ~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~---p~-~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                      +-+.+|.|+|.+|..+|+|++|+..|++++++.   ++ +    ..+...+.++..++.+++|++.|+++.++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            346789999999999999999999999999873   22 2    37788899999999999999999988764

...

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.65  E-value=0.00056  Score=70.12  Aligned_cols=101  Identities=14%  Similarity=0.075  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------------------------------------HHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------------------------------------TYYSNRA  505 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~-------------------------------------~~~~n~a  505 (573)
                      ..+....++..++..|++++|++.++++++.+|++.                                     .++.++|
T Consensus        42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a  121 (355)
T cd05804          42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA  121 (355)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence            345566677777788888888888877777766654                                     3344667


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          506 AAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       506 ~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .++..+|++++|++.++++++++|++. .+..++.++...++++++...+.+.....|.
T Consensus       122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            788999999999999999999999984 7777889999999999999999998887764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.00046  Score=64.24  Aligned_cols=70  Identities=19%  Similarity=0.202  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCc
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~---~~~~Al~~~~~al~l~p~~  531 (573)
                      ...++|.++++.|+..|+|++|.-||++.+-++|.++.++..+|.+++-+|   ++.-|.++|.++++++|.+
T Consensus       152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN  224 (289)
T ss_pred             CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence            458899999999999999999999999999999999999999999999876   6889999999999999965

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.64  E-value=8.1e-05  Score=71.36  Aligned_cols=103  Identities=14%  Similarity=0.010  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~---~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      +.+.|...+-.++|+-++.+|.+|+....+   .+..|+|+|.+....|++.-|-++|+-||.-||++ .++..++....
T Consensus       361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~  440 (478)
T KOG1129|consen  361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA  440 (478)
T ss_pred             HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh
Confidence            444555555555555555555555554321   24555555555555666666666666666666655 35555555555


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCCCc
Q 008244          543 CLDITRRQLKIFHMHWSWSPPIKEHPF  569 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~~~~~~  569 (573)
                      ..+.++.|-..+..+.+..|.-.|..+
T Consensus       441 r~G~i~~Arsll~~A~s~~P~m~E~~~  467 (478)
T KOG1129|consen  441 RSGDILGARSLLNAAKSVMPDMAEVTT  467 (478)
T ss_pred             hcCchHHHHHHHHHhhhhCcccccccc
Confidence            556677777777777777776555443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.62  E-value=0.0001  Score=73.41  Aligned_cols=102  Identities=19%  Similarity=0.152  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      .-++.++.++||..|..|++++|.+.|.+||.-+.....+++|.|..+.++|+.++|+.+|-+.-.+=-++ ..++..+.
T Consensus       487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qian  566 (840)
T KOG2003|consen  487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIAN  566 (840)
T ss_pred             ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34567788999999999999999999999999998889999999999999999999999998865554444 47777888


Q ss_pred             HHHHHHHHHHHHHHHhhccccCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      +++.++.-.+|++.|.++.++-|
T Consensus       567 iye~led~aqaie~~~q~~slip  589 (840)
T KOG2003|consen  567 IYELLEDPAQAIELLMQANSLIP  589 (840)
T ss_pred             HHHHhhCHHHHHHHHHHhcccCC
Confidence            88888888888888887777655

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.62  E-value=0.00044  Score=72.09  Aligned_cols=85  Identities=12%  Similarity=0.051  Sum_probs=80.6

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 008244          476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFH  555 (573)
Q Consensus       476 ~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~al~~~~  555 (573)
                      ..++++++++..++.++..|+++..+..+|..+++.++|++|.++|+++++++|++..+...+.++..++..++|.+.|.
T Consensus       306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~  385 (398)
T PRK10747        306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRR  385 (398)
T ss_pred             cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55999999999999999999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             hcccc
Q 008244          556 MHWSW  560 (573)
Q Consensus       556 ~~~~~  560 (573)
                      +...+
T Consensus       386 ~~l~~  390 (398)
T PRK10747        386 DGLML  390 (398)
T ss_pred             HHHhh
Confidence            88764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.61  E-value=0.00095  Score=64.26  Aligned_cols=108  Identities=10%  Similarity=0.026  Sum_probs=93.1

Q ss_pred             CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--H
Q 008244          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--L  533 (573)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--~  533 (573)
                      ....+-+.++-+.+++..+....+++.|+....+|++.+|++..+-.-+|.+++..|+|+.|++.++.+++.||++.  .
T Consensus       172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev  251 (389)
T COG2956         172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV  251 (389)
T ss_pred             CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence            44455667888999999999999999999999999999999999999999999999999999999999999999983  6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +-.+.+++..+++.++++..+......++.
T Consensus       252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         252 LEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            666778888889988888888877766553

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.60  E-value=0.00059  Score=71.79  Aligned_cols=109  Identities=12%  Similarity=0.093  Sum_probs=93.1

Q ss_pred             ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 008244          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--------NNATYYSNRAAAYLESGSFLQAEADCTKAINLD-  528 (573)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p--------~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-  528 (573)
                      ..+|.-+..+.+++..|++.|+|++|..+|++|+++-.        .-+..+.+.+..+..++++++|+..+++++++- 
T Consensus       277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~  356 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL  356 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999998742        336899999999999999999999999998864 


Q ss_pred             ----cCc----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          529 ----KKV----RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       529 ----p~~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                          +++    +.+..++..+..++.+++|.+.|+.+.+......+
T Consensus       357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~  402 (508)
T KOG1840|consen  357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG  402 (508)
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence                233    46777899999999999999999999987754333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.58  E-value=0.00072  Score=71.15  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=82.8

Q ss_pred             ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008244          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (573)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p  529 (573)
                      ...+.-.......|..|..+++|.+|+..|++|+.+        +|.-+..+.|+|..|.+.|+|++|..+|++|+++--
T Consensus       235 ~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~  314 (508)
T KOG1840|consen  235 LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE  314 (508)
T ss_pred             ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence            445566677778999999999999999999999976        344579999999999999999999999999998753


Q ss_pred             C-----c----HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          530 K-----V----RLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       530 ~-----~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                      .     .    ..+...+.+...++.++++.+.|..+.++
T Consensus       315 ~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  315 KLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             HhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            3     1    24555566777778888888877766653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.56  E-value=0.0017  Score=62.63  Aligned_cols=107  Identities=9%  Similarity=0.046  Sum_probs=86.1

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~  537 (573)
                      .+|+.+.+-..+|.++..+|+|++|++.+..+++.||+. +.....+..||..+|+.++.+....++.+.++........
T Consensus       209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l  288 (389)
T COG2956         209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELML  288 (389)
T ss_pred             hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHH
Confidence            355555566778999999999999999999999999986 5778888999999999999999999999999888766666


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++....++..+.|....-.-....|..+
T Consensus       289 ~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~  316 (389)
T COG2956         289 ADLIELQEGIDAAQAYLTRQLRRKPTMR  316 (389)
T ss_pred             HHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence            6666666777777776666666666543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.55  E-value=0.0018  Score=68.81  Aligned_cols=92  Identities=15%  Similarity=0.070  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH-HHHHH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEA-QQERC  543 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~-~~~~~  543 (573)
                      -.++-++..+-..|+|++|++..++||+..|..+++|..+|.+|-+.|++++|.+..+.|-++|+.++....++ +....
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999986554443 33333


Q ss_pred             HHHHHHHHHHHhh
Q 008244          544 LDITRRQLKIFHM  556 (573)
Q Consensus       544 ~~~~~~al~~~~~  556 (573)
                      -+.+++|.+.+..
T Consensus       275 a~~~e~A~~~~~~  287 (517)
T PF12569_consen  275 AGRIEEAEKTASL  287 (517)
T ss_pred             CCCHHHHHHHHHh
Confidence            3677777666553

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.50  E-value=0.00019  Score=45.60  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      .+|+++|.+|.++|++++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            567888888888888888888888888888753

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.49  E-value=0.00026  Score=54.09  Aligned_cols=61  Identities=20%  Similarity=0.133  Sum_probs=55.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          505 AAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       505 a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ..+|++.++|++|++.++++++++|++. .++.+|.++..++++.+|.+.|+..++..|...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            5688999999999999999999999985 888899999999999999999999999998543

>TIGR00540 hemY_coli hemY protein

Probab=97.48  E-value=0.00065  Score=71.14  Aligned_cols=87  Identities=9%  Similarity=0.003  Sum_probs=75.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCcCcHHHHHHHHHHHHHHHHHH
Q 008244          474 AYKDKQWLKAISFYTEAIKLNGNNA--TYYSNRAAAYLESGSFLQAEADCT--KAINLDKKVRLICAEAQQERCLDITRR  549 (573)
Q Consensus       474 ~~~~~~~~~Ai~~y~~ai~~~p~~~--~~~~n~a~~~~~l~~~~~Al~~~~--~al~l~p~~~~~~~~~~~~~~~~~~~~  549 (573)
                      .++.++.+++++.++++++..|+++  .++..+|.+++++|+|++|.++++  ++++.+|+...+...++++..++..++
T Consensus       309 ~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~  388 (409)
T TIGR00540       309 RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAE  388 (409)
T ss_pred             hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHH
Confidence            3445788899999999999999999  888899999999999999999999  688899998767788999999999999


Q ss_pred             HHHHHhhcccc
Q 008244          550 QLKIFHMHWSW  560 (573)
Q Consensus       550 al~~~~~~~~~  560 (573)
                      |.+.|.+....
T Consensus       389 A~~~~~~~l~~  399 (409)
T TIGR00540       389 AAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHHHHH
Confidence            99999887553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.44  E-value=0.0028  Score=55.82  Aligned_cols=95  Identities=19%  Similarity=0.001  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLI  534 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~  534 (573)
                      +.+...+......+..+++..+...+++.++-.|+.   ..+++.+|.+++..|++++|+..|+++++..|+.    .+.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            446667777777788999999999999999999998   6888999999999999999999999999988664    377


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 008244          535 CAEAQQERCLDITRRQLKIFHM  556 (573)
Q Consensus       535 ~~~~~~~~~~~~~~~al~~~~~  556 (573)
                      ++++.++...+.+++|+..++.
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHh
Confidence            8889999999999999999976

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.44  E-value=0.00018  Score=71.03  Aligned_cols=98  Identities=15%  Similarity=0.124  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c---
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--V---  531 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--~---  531 (573)
                      .-..+-++||.||-.|+|++||..-+.-|++...      .-.+|.|+|+||..+|+|+.|+++|++.+.|.-.  +   
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v  273 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV  273 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence            3456778999999999999999998887777543      2478999999999999999999999988766432  1   


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          532 --RLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       532 --~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                        ...|.++..+..+..+++|+.++.+++.+
T Consensus       274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              35566777777778888888877776654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.43  E-value=0.0036  Score=51.23  Aligned_cols=92  Identities=14%  Similarity=0.166  Sum_probs=73.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C
Q 008244          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGN------------NATYYSNRAAAYLESGSFLQAEADCTKAINL-------D  528 (573)
Q Consensus       468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~------------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l-------~  528 (573)
                      ...|...++.|-|++|...|++|.++.-.            ++.+|.-++.++..+|+|++++...+++|..       +
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            44566778889999999999999987532            3578888999999999999999999999864       3


Q ss_pred             cCc-----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          529 KKV-----RLICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       529 p~~-----~~~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                      .+.     .+.+.++.....+++.++|++.|.++-.
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            332     4778899999999999999999987654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.0031  Score=58.40  Aligned_cols=73  Identities=19%  Similarity=0.221  Sum_probs=67.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +....-.+.|....++..++|-++++.++..|..+|.+..+|+.||.++....+..+|..|+.++|+++|...
T Consensus       226 dk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  226 DKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             HHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence            3344556789999999999999999999999999999999999999999999999999999999999999973

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.41  E-value=0.0018  Score=72.39  Aligned_cols=96  Identities=10%  Similarity=0.015  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------------------ATYYSNRAAAYLESGSFLQAEADC  521 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-------------------~~~~~n~a~~~~~l~~~~~Al~~~  521 (573)
                      |+....++-+|..+++.+++.++...  +++..-+.+                   -.+++.+|.||-++|++++|...|
T Consensus        62 P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~y  139 (906)
T PRK14720         62 KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVW  139 (906)
T ss_pred             CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHH
Confidence            46677777788877777777666554  444444444                   489999999999999999999999


Q ss_pred             HHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          522 TKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       522 ~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                      +++|++||++. ++.+.|..+... ..++|.+.+.++..
T Consensus       140 er~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~  177 (906)
T PRK14720        140 ERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY  177 (906)
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence            99999999984 555555555555 66677666666554

>PRK11906 transcriptional regulator; Provisional

Probab=97.40  E-value=0.0011  Score=67.82  Aligned_cols=98  Identities=13%  Similarity=0.086  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      +.++.++...|..+.-.++++.|+..+++|+.++|+.+.+|+.+|....-.|+.++|++..++|++++|.-. +...+.-
T Consensus       335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~  414 (458)
T PRK11906        335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC  414 (458)
T ss_pred             CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999863 3222222


Q ss_pred             H-HHHHHHHHHHHHHHhhcc
Q 008244          540 Q-ERCLDITRRQLKIFHMHW  558 (573)
Q Consensus       540 ~-~~~~~~~~~al~~~~~~~  558 (573)
                      + ..+....+++.+.|.+..
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~  434 (458)
T PRK11906        415 VDMYVPNPLKNNIKLYYKET  434 (458)
T ss_pred             HHHHcCCchhhhHHHHhhcc
Confidence            2 344467778888776544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.38  E-value=0.0004  Score=47.18  Aligned_cols=41  Identities=27%  Similarity=0.131  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244          498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA  538 (573)
Q Consensus       498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~  538 (573)
                      +.+|..+|.+|..+|++++|++.|+++++.+|++. +...++
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            35789999999999999999999999999999995 444444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.0041  Score=61.86  Aligned_cols=84  Identities=14%  Similarity=0.044  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       481 ~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                      ++|...|++++.++|....+-..+|..+..-|++++++...++.|...|+...+..++++..+.+.+++++..|..++.+
T Consensus       421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            67888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 008244          561 SPPI  564 (573)
Q Consensus       561 ~~~~  564 (573)
                      +|..
T Consensus       501 dP~~  504 (564)
T KOG1174|consen  501 DPKS  504 (564)
T ss_pred             Cccc
Confidence            9964

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.34  E-value=0.0005  Score=74.95  Aligned_cols=95  Identities=19%  Similarity=0.124  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~  542 (573)
                      ...|.++|-.+.+.+++.+|+..++.|+..+|++..+|..+|.+|...|+|..|++.|++|..++|.+. ..|..+..+.
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC  641 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence            445677999999999999999999999999999999999999999999999999999999999999984 6666677777


Q ss_pred             HHHHHHHHHHHHhhcc
Q 008244          543 CLDITRRQLKIFHMHW  558 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~  558 (573)
                      -++.+++++..+.+-.
T Consensus       642 d~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  642 DNGKYKEALDALGLII  657 (1238)
T ss_pred             HhhhHHHHHHHHHHHH
Confidence            7788888877766543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.31  E-value=0.0023  Score=64.05  Aligned_cols=102  Identities=15%  Similarity=-0.025  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      .-.+++++.|..+-.+|+.++|+++|-+.-.+--+++..++.++.+|..+.+..+|++-+.++..+-|+++ .+-.++.+
T Consensus       522 sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dl  601 (840)
T KOG2003|consen  522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL  601 (840)
T ss_pred             HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            55778888888888888888888888776666667888888888888888888888888888888888875 44455666


Q ss_pred             HHHHHHHHHHHHHHhhccccCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +...+...+|++++...+.+-|.
T Consensus       602 ydqegdksqafq~~ydsyryfp~  624 (840)
T KOG2003|consen  602 YDQEGDKSQAFQCHYDSYRYFPC  624 (840)
T ss_pred             hhcccchhhhhhhhhhcccccCc
Confidence            66666666666666666665554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.00091  Score=64.33  Aligned_cols=85  Identities=14%  Similarity=0.124  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH---HHHHHHHHHHh
Q 008244          480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCL---DITRRQLKIFH  555 (573)
Q Consensus       480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~---~~~~~al~~~~  555 (573)
                      .++.+...+..|..+|+|..-|.-+|.+|+.++++..|+..|.+|+++.|++. .+...++++.+.   ....++-+.|.
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            45556667788999999999999999999999999999999999999999995 555566666666   55778888889


Q ss_pred             hccccCCCC
Q 008244          556 MHWSWSPPI  564 (573)
Q Consensus       556 ~~~~~~~~~  564 (573)
                      ++..++|..
T Consensus       218 ~al~~D~~~  226 (287)
T COG4235         218 QALALDPAN  226 (287)
T ss_pred             HHHhcCCcc
Confidence            999888854

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.30  E-value=0.0063  Score=58.56  Aligned_cols=73  Identities=15%  Similarity=0.018  Sum_probs=62.5

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCC------------------HHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGS------------------FLQA  517 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~------------------~~~A  517 (573)
                      ..+........+|..+++.++|++|+..|++.|+..|++   +.+++.+|.|++.+++                  -.+|
T Consensus        64 ~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A  143 (243)
T PRK10866         64 FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAA  143 (243)
T ss_pred             CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHH
Confidence            334556678899999999999999999999999999886   5889999999866651                  2579


Q ss_pred             HHHHHHHHHhCcCc
Q 008244          518 EADCTKAINLDKKV  531 (573)
Q Consensus       518 l~~~~~al~l~p~~  531 (573)
                      ++.+++.++.-|+.
T Consensus       144 ~~~~~~li~~yP~S  157 (243)
T PRK10866        144 FRDFSKLVRGYPNS  157 (243)
T ss_pred             HHHHHHHHHHCcCC
Confidence            99999999999996

>TIGR00540 hemY_coli hemY protein

Probab=97.29  E-value=0.0045  Score=64.83  Aligned_cols=91  Identities=13%  Similarity=0.068  Sum_probs=43.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHH
Q 008244          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLD  545 (573)
Q Consensus       468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~-~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~  545 (573)
                      .-.+..+.++|++++|.+.|.++.+..|++. .+...++..++..|++++|++.+++.++.+|++. .+...+.++...+
T Consensus       122 llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~  201 (409)
T TIGR00540       122 IKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG  201 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            3444444555555555555555555444443 2333345555555555555555555555555543 3334444444445


Q ss_pred             HHHHHHHHHhhcc
Q 008244          546 ITRRQLKIFHMHW  558 (573)
Q Consensus       546 ~~~~al~~~~~~~  558 (573)
                      +++++++.+....
T Consensus       202 d~~~a~~~l~~l~  214 (409)
T TIGR00540       202 AWQALDDIIDNMA  214 (409)
T ss_pred             hHHHHHHHHHHHH
Confidence            5554444444333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.28  E-value=0.0051  Score=58.01  Aligned_cols=97  Identities=14%  Similarity=0.068  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLI  534 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~  534 (573)
                      ..+..|.+.|...++.|+|++|+..|+......|..   ..+...++.++++-++|++|+...++=+++.|++    .++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            358899999999999999999999999999998875   5889999999999999999999999999999987    366


Q ss_pred             HHHHHHHHHH--------HHHHHHHHHHhhcc
Q 008244          535 CAEAQQERCL--------DITRRQLKIFHMHW  558 (573)
Q Consensus       535 ~~~~~~~~~~--------~~~~~al~~~~~~~  558 (573)
                      |.++......        ...+++...|..-.
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i  143 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELV  143 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHH
Confidence            7666553322        34455555554433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.27  E-value=0.0067  Score=63.23  Aligned_cols=95  Identities=13%  Similarity=-0.012  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH
Q 008244          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY-SNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCL  544 (573)
Q Consensus       467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~-~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~  544 (573)
                      +...+....+.|++++|.+.|.++.+.+|++..+. ...+..+...|++++|++.+++.++.+|++. .+...++++...
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~  200 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            44445555888888888888888888888875433 3448888888888888888888888888884 666667777777


Q ss_pred             HHHHHHHHHHhhccccC
Q 008244          545 DITRRQLKIFHMHWSWS  561 (573)
Q Consensus       545 ~~~~~al~~~~~~~~~~  561 (573)
                      ++++++++.+...-+..
T Consensus       201 gdw~~a~~~l~~l~k~~  217 (398)
T PRK10747        201 GAWSSLLDILPSMAKAH  217 (398)
T ss_pred             HhHHHHHHHHHHHHHcC
Confidence            88888887666555443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.26  E-value=0.0044  Score=55.11  Aligned_cols=99  Identities=13%  Similarity=0.101  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEAQ  539 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~-~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~~  539 (573)
                      .+-...+++.+.+.|+|.||...|.+++. +--.++..+..++++.+..+++.+|..-.++..+.+|..   ......+.
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR  168 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR  168 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence            45567899999999999999999999985 566788889999999999999999999999999998886   25555667


Q ss_pred             HHHHHHHHHHHHHHHhhccccCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      .+..++.++++-..|+.+.+.-|
T Consensus       169 ~laa~g~~a~Aesafe~a~~~yp  191 (251)
T COG4700         169 TLAAQGKYADAESAFEVAISYYP  191 (251)
T ss_pred             HHHhcCCchhHHHHHHHHHHhCC
Confidence            77777888888888887776555

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.19  E-value=0.0052  Score=57.54  Aligned_cols=71  Identities=17%  Similarity=0.100  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGS-----------FLQAEADCTKAIN  526 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~-----------~~~Al~~~~~al~  526 (573)
                      +-..+..+..|..+++.++|.+|+..|++-|+..|++   ..+++.+|.|++++.+           ..+|+..|++.++
T Consensus        39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~  118 (203)
T PF13525_consen   39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK  118 (203)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence            4557788999999999999999999999999999986   4799999999887643           4589999999999


Q ss_pred             hCcCc
Q 008244          527 LDKKV  531 (573)
Q Consensus       527 l~p~~  531 (573)
                      .-|+.
T Consensus       119 ~yP~S  123 (203)
T PF13525_consen  119 RYPNS  123 (203)
T ss_dssp             H-TTS
T ss_pred             HCcCc
Confidence            99996

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.17  E-value=0.0033  Score=62.15  Aligned_cols=103  Identities=17%  Similarity=0.131  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----
Q 008244          462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----  530 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~-~~~~~Ai~~y~~ai~~~p~--~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~----  530 (573)
                      ..+..+.+.|..|.+. +++++|++.|++|+++-..  .    ...+.+.|.++.++++|++|++.|+++.+..-+    
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            4477888999999888 9999999999999987432  2    478889999999999999999999999885422    


Q ss_pred             -c--H-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          531 -V--R-LICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       531 -~--~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                       +  + .++....++.+.+..-.|.+.|+..-...|..
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence             1  2 33445567777788888888888887777743

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.14  E-value=0.0054  Score=58.37  Aligned_cols=113  Identities=13%  Similarity=0.068  Sum_probs=83.7

Q ss_pred             CCCCceeEEEeccCCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244          412 DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI  491 (573)
Q Consensus       412 ~glPvGlq~~~~~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai  491 (573)
                      ++.|+.        ....+++.|..+-..-.-......-..+...-++.+..+.+++=+|+.+|.+|+|++|...|..++
T Consensus       134 ~~~p~~--------~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~  205 (262)
T COG1729         134 DGAPVS--------PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVV  205 (262)
T ss_pred             CCCCCC--------chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHH
Confidence            566666        333366655554432221111222223333444555667788889999999999999999999999


Q ss_pred             HhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          492 KLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       492 ~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +-.|++   +++++.+|.|...+++.++|...++++++..|+..
T Consensus       206 k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         206 KDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            988765   69999999999999999999999999999999985

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.13  E-value=0.00095  Score=67.85  Aligned_cols=74  Identities=20%  Similarity=0.137  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLI  534 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~  534 (573)
                      |..+..+-+++..+.+.++|..|+.-..+||+.+|....+|+.+|.+++++++|.+|+.++++...+.|+.+..
T Consensus        35 pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~  108 (476)
T KOG0376|consen   35 PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA  108 (476)
T ss_pred             CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence            35677777888999999999999999999999999999999999999999999999999999999999998633

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.13  E-value=0.0056  Score=51.12  Aligned_cols=71  Identities=20%  Similarity=0.194  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      |+.+..|++++..+.-+|+-++|++.+++|+++.-..    ..+|..||..|..+|+-+.|..||+.|-++-..+
T Consensus        74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen   74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            4789999999999999999999999999999997543    5889999999999999999999999999998776

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.0031  Score=62.68  Aligned_cols=67  Identities=16%  Similarity=0.109  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~  530 (573)
                      +..|+-.+..++..++|+.|+..-.++|+.+|++..+|...|..+..+++.++|+-.|+.|..+.|.
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~  366 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY  366 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence            3344444444555555555555555555555555555555555555555555555555555555543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.10  E-value=0.0022  Score=63.46  Aligned_cols=97  Identities=23%  Similarity=0.234  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--C----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCc---
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--N----NATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKV---  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p--~----~~~~~~n~a~~~~~l-~~~~~Al~~~~~al~l~p~~---  531 (573)
                      ..+..+.+.++ .++..++++|+++|++|+++.-  .    -+.++.++|.+|... +++++|++.|++|+++--..   
T Consensus        73 ~Aa~~~~~Aa~-~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~  151 (282)
T PF14938_consen   73 EAAKAYEEAAN-CYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP  151 (282)
T ss_dssp             HHHHHHHHHHH-HHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHH-HHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence            33445555444 4566699999999999998732  2    268999999999998 99999999999999974221   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          532 ----RLICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                          ..+...+.+...++.+++|++.|+....
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                3555667888888999999999997654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.09  E-value=0.004  Score=66.59  Aligned_cols=74  Identities=12%  Similarity=0.047  Sum_probs=67.8

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAIS--FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~--~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      -+|+.......+|..+.+.|+-.-|..  ....+++++|.++++|+++|.++.++|+.++|.++|+.|++|++.++
T Consensus       713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            356778888899999999998888888  99999999999999999999999999999999999999999998763

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.08  E-value=0.0014  Score=67.16  Aligned_cols=64  Identities=17%  Similarity=0.247  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a  524 (573)
                      |..+..+..++..+.++++|+.|++..+++++..|++...|+.++.||.++|+|++|+..++-+
T Consensus       231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            3458899999999999999999999999999999999999999999999999999999777644

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.07  E-value=0.0036  Score=65.61  Aligned_cols=89  Identities=17%  Similarity=0.160  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHH
Q 008244          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLD  545 (573)
Q Consensus       467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~  545 (573)
                      |.-.|..+...++|++||+||+.|+.++|+|-.+|..++....++++|+-....=.+.++++|... .+...+..+...+
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g  157 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG  157 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            444444444455555555555555555555555555555555555555555555555555555543 2222333333344


Q ss_pred             HHHHHHHHHh
Q 008244          546 ITRRQLKIFH  555 (573)
Q Consensus       546 ~~~~al~~~~  555 (573)
                      .+..|+...+
T Consensus       158 ~y~~A~~il~  167 (700)
T KOG1156|consen  158 EYKMALEILE  167 (700)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.07  E-value=0.0051  Score=61.26  Aligned_cols=93  Identities=17%  Similarity=0.165  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------------------ATYYSNRAAAYLESGSFLQAEADCTKA  524 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------------------~~~~~n~a~~~~~l~~~~~Al~~~~~a  524 (573)
                      ..+...+.+...|++++|..|+..|..+|++..+-                  ...-..+..||+++++.+-|+....+.
T Consensus       175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs  254 (569)
T PF15015_consen  175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS  254 (569)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence            34444556677788888888888888888764321                  234456889999999999999999999


Q ss_pred             HHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHh
Q 008244          525 INLDKKV-RLICAEAQQERCLDITRRQLKIFH  555 (573)
Q Consensus       525 l~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~  555 (573)
                      +.+||.+ .-+++++.+.+++++|.+|.+.+-
T Consensus       255 I~lnP~~frnHLrqAavfR~LeRy~eAarSam  286 (569)
T PF15015_consen  255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAM  286 (569)
T ss_pred             hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998 488899999999999999988653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.03  E-value=0.0017  Score=48.71  Aligned_cols=57  Identities=14%  Similarity=-0.014  Sum_probs=51.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          508 YLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       508 ~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +++.|+|++|++.|+++++.+|++. ..+.++.++...+++++|.+.+++....+|..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            4678999999999999999999984 88889999999999999999999999988864

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.02  E-value=0.0034  Score=68.76  Aligned_cols=97  Identities=14%  Similarity=0.048  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcH-HHHHHHHHHHH
Q 008244          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKVR-LICAEAQQERC  543 (573)
Q Consensus       466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~  543 (573)
                      .....+....+.++|++||+...++++.+|+|..++.-+|.++..+++ .++|-+.|..|.+++|++- +...++..++.
T Consensus         4 ~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~   83 (1238)
T KOG1127|consen    4 TALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER   83 (1238)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence            345567777889999999999999999999999999999999999998 9999999999999999983 44444433333


Q ss_pred             ---HHHHHHHHHHHhhccccCC
Q 008244          544 ---LDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       544 ---~~~~~~al~~~~~~~~~~~  562 (573)
                         ...+.++...|.+.....+
T Consensus        84 ~~dIl~ld~~~~~yq~~~l~le  105 (1238)
T KOG1127|consen   84 YNDILDLDRAAKCYQRAVLILE  105 (1238)
T ss_pred             cchhhhhhHhHHHHHHHHHhhh
Confidence               3455555555555544433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.01  E-value=0.0048  Score=43.43  Aligned_cols=34  Identities=15%  Similarity=0.242  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +.++.+|..++++|+|++|.++++.+|+++|+|.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            4678899999999999999999999999999996

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.01  E-value=0.0085  Score=63.82  Aligned_cols=76  Identities=14%  Similarity=0.045  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEA  538 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~  538 (573)
                      ..+.+.-+..++.+.|+|++|++.+++....-.+....+-.+|.+|+++|++++|...|+..|+.||++..++...
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L   78 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGL   78 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            3555666778889999999999999999999999999999999999999999999999999999999997555543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.00  E-value=0.002  Score=58.57  Aligned_cols=80  Identities=15%  Similarity=0.076  Sum_probs=73.1

Q ss_pred             CCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +++...-+|+.+..++-+|.-+...|+|+.|.+.|+..++++|.+--++.|||..++--|+|+-|.+++.+-.+-||+++
T Consensus        88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785          88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             hhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            34444456788999999999999999999999999999999999999999999999999999999999999999999973

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.96  E-value=0.0033  Score=70.32  Aligned_cols=102  Identities=7%  Similarity=-0.079  Sum_probs=89.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---------  530 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~---------  530 (573)
                      ++.+..++.++...+..++++++|++.++.+++..|+...+|+..|..|+..+++.++...  .++.+-+.         
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence            4577999999999999999999999999999999999999999999999999988777665  55544332         


Q ss_pred             ----------c-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          531 ----------V-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       531 ----------~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                                + .+++.+|.++..++..+++...|++...++|.
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~  148 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD  148 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc
Confidence                      2 48888999999999999999999999999974

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.90  E-value=0.021  Score=50.16  Aligned_cols=93  Identities=18%  Similarity=0.144  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------------ATYYSNRAAAYLESGSFLQAEADC  521 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----------------------~~~~~n~a~~~~~l~~~~~Al~~~  521 (573)
                      .+.+...+......++.++++..+.+++.+-..+                      ..+...++..+...|++++|+..+
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            4445556667777788888888888888763211                      256666677788889999999999


Q ss_pred             HHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 008244          522 TKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHM  556 (573)
Q Consensus       522 ~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~  556 (573)
                      ++++.++|-+. .+..+.+++...++..+|++.|+.
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~  121 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER  121 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            99999999873 444555666666666666666554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.90  E-value=0.0021  Score=40.66  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN  497 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~  497 (573)
                      ++.+..+|..+.+.|++++|++.|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3578899999999999999999999999999953

...

>PRK10941 hypothetical protein; Provisional

Probab=96.80  E-value=0.017  Score=56.15  Aligned_cols=68  Identities=10%  Similarity=0.041  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      ..+.++-..+.+.++|+.|+.+.+..+.++|+++.-+-.||.+|.+++.+..|+.|++.-++..|+..
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp  249 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP  249 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence            34567788899999999999999999999999999999999999999999999999999999999985

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.76  E-value=0.012  Score=61.84  Aligned_cols=101  Identities=12%  Similarity=-0.055  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      ...|...++...-+++.++|++.++++|+..|+.+.+|..+|+++..+++.+.|...|...+++.|+. .....++++.+
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            45577777788888999999999999999999999999999999999999999999999999999998 57777788888


Q ss_pred             HHHHHHHHHHHHhhccccCCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ..+..-+|-..++++-..||..
T Consensus       731 k~~~~~rAR~ildrarlkNPk~  752 (913)
T KOG0495|consen  731 KDGQLVRARSILDRARLKNPKN  752 (913)
T ss_pred             HhcchhhHHHHHHHHHhcCCCc
Confidence            8889999999999998888853

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=0.0039  Score=60.71  Aligned_cols=107  Identities=13%  Similarity=0.096  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhC
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI--------------NLD  528 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al--------------~l~  528 (573)
                      ..+.|  .|-.+|..|+|++|+..|+.+.+.+.-+.+++.|+|.|++-+|.|.+|.....+|-              +++
T Consensus        58 ~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen   58 SLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             HHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence            34444  67889999999999999999999887889999999999999999999988766542              222


Q ss_pred             cCc-------------HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccc
Q 008244          529 KKV-------------RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPFLL  571 (573)
Q Consensus       529 p~~-------------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  571 (573)
                      -.-             .-...++..+...-.|++|+..|.+-+.-+|.+-..-+||
T Consensus       136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~  191 (557)
T KOG3785|consen  136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM  191 (557)
T ss_pred             cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence            111             0122345556666789999999998888887654444443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=96.75  E-value=0.0073  Score=63.43  Aligned_cols=106  Identities=8%  Similarity=-0.033  Sum_probs=92.2

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      ..|++.+.+--.|..+...|+-++|.++...++..++.+..+|.-+|..+..-++|++|+++|+.|++++|+|. .+..+
T Consensus        36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl  115 (700)
T KOG1156|consen   36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL  115 (700)
T ss_pred             hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            66777888888999999999999999999999999999999999999999999999999999999999999995 55556


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +..+..++.++-.+..-.+.+++.|..
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            666667788887777777777777753

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.73  E-value=0.0057  Score=60.47  Aligned_cols=66  Identities=17%  Similarity=0.163  Sum_probs=34.8

Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH
Q 008244          479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCL  544 (573)
Q Consensus       479 ~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~  544 (573)
                      ++++|.-.|++..+..+.++..++.++.|++.+|+|++|.+.+++|++.+|++. .+..+..+...+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~  248 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL  248 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence            466666666665555455556666666666666666666666666666666553 444444443333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.70  E-value=0.0034  Score=40.45  Aligned_cols=29  Identities=21%  Similarity=0.280  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244          500 YYSNRAAAYLESGSFLQAEADCTKAINLD  528 (573)
Q Consensus       500 ~~~n~a~~~~~l~~~~~Al~~~~~al~l~  528 (573)
                      +|.++|.+|.++|+|++|++.|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47889999999999999999999976554

>smart00028 TPR Tetratricopeptide repeats

Probab=96.67  E-value=0.0025  Score=39.07  Aligned_cols=32  Identities=31%  Similarity=0.368  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (573)
Q Consensus       499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~  530 (573)
                      .+|.++|.+|..++++++|+..++++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45777888888888888888888888877775

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.66  E-value=0.0034  Score=39.25  Aligned_cols=32  Identities=16%  Similarity=0.100  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       500 ~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      +++++|.||.++|++++|++.+++.++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56778888888888888888888888877763

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.0028  Score=60.29  Aligned_cols=66  Identities=21%  Similarity=0.233  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l  527 (573)
                      ..+....+.|-.+|+.|+|++|++.|+.|++..--++..-+|.+.|+++.++|..|++...+.++.
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            346778899999999999999999999999999999999999999999999999999999888764

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.63  E-value=0.018  Score=50.63  Aligned_cols=63  Identities=11%  Similarity=0.095  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~  526 (573)
                      ...+...+..+...|++++|+..+++++..+|.+..+|..+-.+|..+|++.+|++.|++..+
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            455667778888999999999999999999999999999999999999999999999998744

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0055  Score=59.34  Aligned_cols=72  Identities=18%  Similarity=0.257  Sum_probs=64.6

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~  530 (573)
                      +..-++..|.|++.+.+-.|+|..||..++++++++|.+..+|++=|.|++.++++++|++-|+..++++-+
T Consensus       114 D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  114 DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            334457789999999999999999999999999999999999999999999999999999999887776544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.01  Score=56.62  Aligned_cols=85  Identities=14%  Similarity=0.094  Sum_probs=67.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHH
Q 008244          473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQL  551 (573)
Q Consensus       473 ~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al  551 (573)
                      .+.+..+|.+||++.+--.+.+|.+-..+.-+|.||+...+|.+|..+|++...+.|... ..+..++.......+..|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            447888999999999999999999999999999999999999999999999999999873 3334455555555566666


Q ss_pred             HHHhhc
Q 008244          552 KIFHMH  557 (573)
Q Consensus       552 ~~~~~~  557 (573)
                      +...+.
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            655443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.54  E-value=0.0017  Score=63.09  Aligned_cols=78  Identities=23%  Similarity=0.115  Sum_probs=71.6

Q ss_pred             CCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (573)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~  530 (573)
                      +..-...+|..+..+..++.++.+.++...||..|..||+++|+.+.-|--|+.+...+|+|++|.+|+..+++++=+
T Consensus       137 ~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  137 FTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             cccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            444556678889999999999999999999999999999999999999999999999999999999999999999844

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.0091  Score=55.26  Aligned_cols=68  Identities=18%  Similarity=0.079  Sum_probs=64.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l  527 (573)
                      +|..+.-+.+.+..+++.++|+.....+.+|++++|+....++-+|++++....|.+|+..+.+|..+
T Consensus        40 nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   40 NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            44678889999999999999999999999999999999999999999999999999999999999655

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.44  E-value=0.016  Score=55.54  Aligned_cols=79  Identities=16%  Similarity=0.201  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      .+++....+.+....+.|+.++|...|..|+.++|+++.++...|.....-++.-+|=++|-+||.++|.+ .++..+++
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            34456666778888899999999999999999999999999999999999999999999999999999998 46655553

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.0073  Score=56.66  Aligned_cols=69  Identities=17%  Similarity=0.234  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      +...+.+.+..+.-+++|.+|...|++.++.||.++.+-+|.|.|++-+|+..+|++..+.+++..|..
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            456788899999999999999999999999999999999999999999999999999999999999985

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.42  E-value=0.016  Score=57.65  Aligned_cols=100  Identities=15%  Similarity=0.113  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-------  530 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~----~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~-------  530 (573)
                      -.++.++||.+.=.|+|+.|+++|.+.+.+    ...  .+..-|.+|+.|.-+++|++||.+..+=|.+...       
T Consensus       235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe  314 (639)
T KOG1130|consen  235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE  314 (639)
T ss_pred             HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            446778999999999999999999886643    332  3566678999999999999999999998777543       


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          531 VRLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      -.+.|.++..+..++..++|+...+++..+.-.
T Consensus       315 ~RacwSLgna~~alg~h~kAl~fae~hl~~s~e  347 (639)
T KOG1130|consen  315 LRACWSLGNAFNALGEHRKALYFAELHLRSSLE  347 (639)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            258899999999999999999998887765543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.29  E-value=0.0092  Score=38.38  Aligned_cols=28  Identities=25%  Similarity=0.420  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          466 IAKEKGNQAYKDKQWLKAISFYTEAIKL  493 (573)
Q Consensus       466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~  493 (573)
                      .+.++|+.+.+.|+|++|+++|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3678999999999999999999996654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.28  E-value=0.04  Score=41.82  Aligned_cols=66  Identities=17%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINL  527 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~---~~~~n~a~~~~~l~~~~~Al~~~~~al~l  527 (573)
                      ..+....+.|..+|.+.+.++|+..++++++..++..   .++-.+..+|...|+|++.++...+=+++
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467788999999999999999999999999987765   55556678899999999999988776655

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.22  E-value=0.023  Score=56.25  Aligned_cols=112  Identities=12%  Similarity=0.039  Sum_probs=81.9

Q ss_pred             eccCCcHHHHHHHHHHHHHHHHH----HHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244          422 ARHGGDRFLLDTVQNMYASLQEQ----ADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN  497 (573)
Q Consensus       422 ~~~~~d~~ll~~a~~le~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~  497 (573)
                      ....+|..+.+++..+-......    .........   ....+..+..+.-++..++..|+|++|.+.+.++++.+|++
T Consensus       158 ~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El---~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~  234 (290)
T PF04733_consen  158 QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL---SDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND  234 (290)
T ss_dssp             HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH---HCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred             HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH---HhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence            46688899999998876554332    122222222   22334457778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcCcHHHHH
Q 008244          498 ATYYSNRAAAYLESGSF-LQAEADCTKAINLDKKVRLICA  536 (573)
Q Consensus       498 ~~~~~n~a~~~~~l~~~-~~Al~~~~~al~l~p~~~~~~~  536 (573)
                      +..+.|+..|...+|+. +.+-+...+.-..+|++.....
T Consensus       235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~  274 (290)
T PF04733_consen  235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD  274 (290)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence            99999999999999998 5566777787888999864433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.068  Score=56.23  Aligned_cols=91  Identities=16%  Similarity=0.161  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHHH
Q 008244          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRL-ICAEA  538 (573)
Q Consensus       466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~-~~~~~  538 (573)
                      .+.+.+..+|+.++|..+++.|...+..-|.+      +....+++.||+++.+.+.|++++++|=+.+|.+.. .+..-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            56789999999999999999999999876654      688999999999999999999999999999999841 11122


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 008244          539 QQERCLDITRRQLKIFHM  556 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~  556 (573)
                      +.....+.-++||.....
T Consensus       436 ~~~~~E~~Se~AL~~~~~  453 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQK  453 (872)
T ss_pred             HHHHHhcchHHHHHHHHH
Confidence            222233555556655543

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.18  Score=46.77  Aligned_cols=99  Identities=19%  Similarity=0.124  Sum_probs=74.5

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcC-
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKK-  530 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~-l~~~~~Al~~~~~al~l~p~-  530 (573)
                      +..+.+..|.+.++.| +..+.++|+.++.++|++-.+-      +..+..+|..|.. +.++++|+.+|++|-+.-.. 
T Consensus        69 skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e  147 (288)
T KOG1586|consen   69 SKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE  147 (288)
T ss_pred             CchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence            3334566666666655 5669999999999999987553      4566678888865 58999999999999876543 


Q ss_pred             ------cHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244          531 ------VRLICAEAQQERCLDITRRQLKIFHMHW  558 (573)
Q Consensus       531 ------~~~~~~~~~~~~~~~~~~~al~~~~~~~  558 (573)
                            |+.+..-++....+++|.+|.+.|++-.
T Consensus       148 es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  148 ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA  181 (288)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  2455556676777799999999998644

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.12  E-value=0.008  Score=55.27  Aligned_cols=59  Identities=19%  Similarity=0.166  Sum_probs=56.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       473 ~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      .+.+.++++.|.+.|++++++.|+....|+++|....+.|+++.|.+.|++.+++||.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            45678999999999999999999999999999999999999999999999999999986

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.11  E-value=0.045  Score=43.54  Aligned_cols=64  Identities=16%  Similarity=0.070  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHHH
Q 008244          483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEAQQERCLDI  546 (573)
Q Consensus       483 Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~~~~~~~~~  546 (573)
                      .+..++++++.+|++..+.+.+|.+++..|++++|++.+-++++.++++   .+...+..+...++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4677889999999999999999999999999999999999999999987   244444455555544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=0.056  Score=56.46  Aligned_cols=93  Identities=17%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~---~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      +...+++..--.+.+.++|++|+.    .|+.++.   +....+.++.|++++++.++|+.+++   .+++... ....+
T Consensus        44 dd~~a~~cKvValIq~~ky~~ALk----~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~  116 (652)
T KOG2376|consen   44 DDEDAIRCKVVALIQLDKYEDALK----LIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELR  116 (652)
T ss_pred             CcHhhHhhhHhhhhhhhHHHHHHH----HHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHH
Confidence            556666677777788888888883    3444442   22333688899999999999998888   5555553 66778


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                      ++....++.|+++++.|..-.+.+
T Consensus       117 AQvlYrl~~ydealdiY~~L~kn~  140 (652)
T KOG2376|consen  117 AQVLYRLERYDEALDIYQHLAKNN  140 (652)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcC
Confidence            888888899999999888665443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.97  E-value=0.033  Score=59.10  Aligned_cols=102  Identities=14%  Similarity=0.032  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--LI  534 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--~~  534 (573)
                      |+-+-.++..|..+..+|+.++|++.|++++.....    ....++.++.|++.+.+|++|.+++.+.++.+.-.+  ..
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~  343 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA  343 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence            455677889999999999999999999999964433    368899999999999999999999999999765555  33


Q ss_pred             HHHHHHHHHHHHH-------HHHHHHHhhccccCC
Q 008244          535 CAEAQQERCLDIT-------RRQLKIFHMHWSWSP  562 (573)
Q Consensus       535 ~~~~~~~~~~~~~-------~~al~~~~~~~~~~~  562 (573)
                      |..|-++..++..       +++.+.|.+...+..
T Consensus       344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            4445555555555       888888887776554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.84  E-value=0.042  Score=54.71  Aligned_cols=82  Identities=11%  Similarity=-0.020  Sum_probs=65.0

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 008244          476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFH  555 (573)
Q Consensus       476 ~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~al~~~~  555 (573)
                      +-+++..=++..++.++..|+++.+++.+|..|++.+.|.+|-.+++.|++..|+...+..++.++..++..++|-+.+.
T Consensus       306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~  385 (400)
T COG3071         306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR  385 (400)
T ss_pred             CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence            45666777777778888899999999999999999999999999999999999997666666666666655555555544


Q ss_pred             hc
Q 008244          556 MH  557 (573)
Q Consensus       556 ~~  557 (573)
                      .+
T Consensus       386 e~  387 (400)
T COG3071         386 EA  387 (400)
T ss_pred             HH
Confidence            33

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.84  E-value=0.17  Score=45.36  Aligned_cols=105  Identities=11%  Similarity=0.049  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQ  540 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~  540 (573)
                      ++..+..+++..+..+++.+|...+++..+.+|.  .+....-.+.+|..+|++.+|...|+.++...|+..+.+..++.
T Consensus       123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~  202 (251)
T COG4700         123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEM  202 (251)
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            3677888999999999999999999999999885  46667777889999999999999999999999998665556655


Q ss_pred             HHHHH----HHHHHHHHHhhccccCCCCCCC
Q 008244          541 ERCLD----ITRRQLKIFHMHWSWSPPIKEH  567 (573)
Q Consensus       541 ~~~~~----~~~~al~~~~~~~~~~~~~~~~  567 (573)
                      +..++    ...+....++...+-.|+++++
T Consensus       203 La~qgr~~ea~aq~~~v~d~~~r~~~H~rkh  233 (251)
T COG4700         203 LAKQGRLREANAQYVAVVDTAKRSRPHYRKH  233 (251)
T ss_pred             HHHhcchhHHHHHHHHHHHHHHhcchhHHHH
Confidence            55554    3333444455554445555543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.81  E-value=0.019  Score=35.77  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN  497 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~  497 (573)
                      +.++++|..+++.|++++|++.|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367899999999999999999999999999974

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.77  E-value=0.093  Score=54.07  Aligned_cols=103  Identities=17%  Similarity=0.136  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcH-HHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKVR-LICAEAQ  539 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-p~~~-~~~~~~~  539 (573)
                      .-....+++.+.+.|+.+|||+.|...++..|.  +...+.|+-.|++.+++|.++.....+==++. |+.. ..|..+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            344567999999999999999999999998875  56799999999999999999977766632221 4432 1122211


Q ss_pred             HHHHH-----------------HHHHHHHHHHhhccccCCCCCCC
Q 008244          540 QERCL-----------------DITRRQLKIFHMHWSWSPPIKEH  567 (573)
Q Consensus       540 ~~~~~-----------------~~~~~al~~~~~~~~~~~~~~~~  567 (573)
                      . +..                 .+...|.+.++++.+.||+++++
T Consensus       339 L-kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  339 L-KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             H-HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            1 111                 13455788999999999998764

The molecular function of this protein is uncertain.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.72  E-value=0.016  Score=35.16  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN  497 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~  497 (573)
                      ..+..+|..++..+++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            457889999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.70  E-value=0.051  Score=56.77  Aligned_cols=92  Identities=14%  Similarity=0.065  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERC  543 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~  543 (573)
                      ...++..-+.+.++++|++|+...++.|...|++..++...=.|+.++++|++|+..-++-..+.-.+...+.++.++..
T Consensus        12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence            46777788889999999999999999999999999999999999999999999995444433333333444789999999


Q ss_pred             HHHHHHHHHHHh
Q 008244          544 LDITRRQLKIFH  555 (573)
Q Consensus       544 ~~~~~~al~~~~  555 (573)
                      ++..++|++.+.
T Consensus        92 lnk~Dealk~~~  103 (652)
T KOG2376|consen   92 LNKLDEALKTLK  103 (652)
T ss_pred             cccHHHHHHHHh
Confidence            999999999988

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.61  E-value=0.036  Score=59.90  Aligned_cols=101  Identities=24%  Similarity=0.358  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCc-HHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLE--SGSFLQAEADCTKAINLDKKV-RLIC  535 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----~~~~~~n~a~~~~~--l~~~~~Al~~~~~al~l~p~~-~~~~  535 (573)
                      .+.....+||.++++++|.+|...|..++.+-|.    .+..+.|++.||+.  +++|.+++.+|+-|+...|.+ +++.
T Consensus        52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll  131 (748)
T KOG4151|consen   52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL  131 (748)
T ss_pred             HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence            3666778999999999999999999999999884    36888999999976  568999999999999999998 6899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .++.++.+++.++-+++.........|.
T Consensus       132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~  159 (748)
T KOG4151|consen  132 KRARKYEALNKLDLAVRDLRIVEKMDPS  159 (748)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999987766666664

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.51  E-value=0.22  Score=54.65  Aligned_cols=94  Identities=10%  Similarity=0.038  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHH--H
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--LICA--E  537 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--~~~~--~  537 (573)
                      +..-+..-.+..+++.|++++|..+.+..-...+++-..+.-+-.||..++++++|+..|+++++.+|+..  .++-  .
T Consensus        41 n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmay  120 (932)
T KOG2053|consen   41 NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAY  120 (932)
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence            55556667888999999999999776666566778888889999999999999999999999999999963  2222  2


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 008244          538 AQQERCLDITRRQLKIFH  555 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~  555 (573)
                      .+...+..+-+.|++.|.
T Consensus       121 vR~~~yk~qQkaa~~LyK  138 (932)
T KOG2053|consen  121 VREKSYKKQQKAALQLYK  138 (932)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345555566677777776

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=95.40  E-value=0.0094  Score=58.40  Aligned_cols=102  Identities=19%  Similarity=0.162  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----------GN--------NATYYSNRAAAYLESGSFLQAEADCTK  523 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-----------p~--------~~~~~~n~a~~~~~l~~~~~Al~~~~~  523 (573)
                      ..+..++.|+..+++++|.+|...|.+++..-           ++        -...+.|.+.|-++++.+..|+..+..
T Consensus       221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~  300 (372)
T KOG0546|consen  221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE  300 (372)
T ss_pred             hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence            34556778888999999999999998887531           11        135677788888888888888888888


Q ss_pred             HHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          524 AINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       524 al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +++.+++. +++|++++.+..+..++++++.++.+....|.-
T Consensus       301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d  342 (372)
T KOG0546|consen  301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND  342 (372)
T ss_pred             ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence            88877765 688888888888888888888888887777643

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.35  E-value=0.089  Score=49.59  Aligned_cols=107  Identities=17%  Similarity=0.127  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-H
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK----LN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-L  533 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~----~~--p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~  533 (573)
                      +.++.....+|...++.|+-+.|...++..-+    ++  -.+-...-|.+.+|.-.++|.+|...++++++.||.+. +
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            46677788899999999999988888874433    22  23467888899999999999999999999999999985 6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEH  567 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  567 (573)
                      ...++.++.++++..+|++..+...+..|...-+
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~  322 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH  322 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence            6778899999999999999999999988854433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.18  E-value=0.08  Score=52.11  Aligned_cols=100  Identities=19%  Similarity=0.134  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--C
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----N------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK--K  530 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p--~  530 (573)
                      +.+.+..+|..+-+.++|++|+-+..+|.++--+    +      ...++.++.++.++|+..+|.++|++|.++.=  .
T Consensus       161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G  240 (518)
T KOG1941|consen  161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG  240 (518)
T ss_pred             eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence            4677889999999999999999999999887432    1      46778899999999999999999999987752  2


Q ss_pred             c-----HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          531 V-----RLICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       531 ~-----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      +     ......+.+++..+..+.+++-|+.+.....
T Consensus       241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~  277 (518)
T KOG1941|consen  241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA  277 (518)
T ss_pred             ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence            3     2455668999999999999999998876544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.17  E-value=1.2  Score=40.47  Aligned_cols=99  Identities=16%  Similarity=0.062  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c----
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--V----  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--~----  531 (573)
                      .+.-..+.++|+-|++.|++++|+++|.++.+.....   ...+.+.-.+.+..++|.....+..+|-.+--.  +    
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            3456788999999999999999999999998876443   578888889999999999999999998665422  2    


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          532 -RLICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       532 -~~~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                       +.....|......+.|..|.+.|-....
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence             2444455666666889999888876543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.13  E-value=0.22  Score=46.03  Aligned_cols=90  Identities=17%  Similarity=0.160  Sum_probs=59.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-c-HHHHHHHHHHHHHHHH
Q 008244          473 QAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-V-RLICAEAQQERCLDIT  547 (573)
Q Consensus       473 ~~~~~~~~~~Ai~~y~~ai~~~p---~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~-~-~~~~~~~~~~~~~~~~  547 (573)
                      .++..+++++|+..|.+++..+|   .....+..++..+...+++++|+..+.++++..+. . ......+..+...+.+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            66677777777777777766655   34566666666666677777777777777777766 2 3555555666655666


Q ss_pred             HHHHHHHhhccccCC
Q 008244          548 RRQLKIFHMHWSWSP  562 (573)
Q Consensus       548 ~~al~~~~~~~~~~~  562 (573)
                      +.+...+.......|
T Consensus       219 ~~a~~~~~~~~~~~~  233 (291)
T COG0457         219 EEALEYYEKALELDP  233 (291)
T ss_pred             HHHHHHHHHHHhhCc
Confidence            777777666666555

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.10  E-value=0.26  Score=48.48  Aligned_cols=68  Identities=12%  Similarity=0.065  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +....++...+..-.|++||+.|++.+.-+|+...+-.++|.||+++.-|+-+-+..+-=|+.-|+..
T Consensus       152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt  219 (557)
T KOG3785|consen  152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST  219 (557)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence            44556777778888999999999999999999999999999999999999999888888888889874

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=0.25  Score=46.82  Aligned_cols=106  Identities=11%  Similarity=0.036  Sum_probs=68.0

Q ss_pred             cCCcHHHHHHHHHHHHHHHHHH----HhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 008244          424 HGGDRFLLDTVQNMYASLQEQA----DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT  499 (573)
Q Consensus       424 ~~~d~~ll~~a~~le~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~  499 (573)
                      ..+|..|.++|+++-.......    ...-.+.++.+   .+..+..+.-++.+.+.+++|++|......+|..+++++.
T Consensus       166 ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe  242 (299)
T KOG3081|consen  166 IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE  242 (299)
T ss_pred             cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence            3466677777777655432211    11111222222   2233566677788888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcH
Q 008244          500 YYSNRAAAYLESGSFLQAEADCTKAIN-LDKKVR  532 (573)
Q Consensus       500 ~~~n~a~~~~~l~~~~~Al~~~~~al~-l~p~~~  532 (573)
                      .+.|+=.|-..+|...++...+-.-++ ..|+++
T Consensus       243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            888888888888887777665554444 446654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.07  E-value=0.16  Score=45.95  Aligned_cols=97  Identities=9%  Similarity=-0.106  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQE  541 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~  541 (573)
                      ......+..+...+++++|+..+++++....+.   ..+-.+++.+.+.++++++|+...+..-.-.=.....-.++.++
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDil  169 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDIL  169 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHH
Confidence            344556666777777777777777777554443   45566677777777777777766554332211112344566667


Q ss_pred             HHHHHHHHHHHHHhhccccC
Q 008244          542 RCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~  561 (573)
                      ...+...+|...|+++....
T Consensus       170 l~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         170 LAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHcCchHHHHHHHHHHHHcc
Confidence            76777777777777666553

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.04  E-value=0.055  Score=35.68  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244          498 ATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (573)
Q Consensus       498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~  528 (573)
                      ..++.|+|.+|..+|++++|+..+++++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3567889999999999999999999888764

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.99  E-value=0.34  Score=39.69  Aligned_cols=93  Identities=13%  Similarity=0.168  Sum_probs=72.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCc-HHH
Q 008244          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG-----------SFLQAEADCTKAINLDKKV-RLI  534 (573)
Q Consensus       470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~---~~~~n~a~~~~~l~-----------~~~~Al~~~~~al~l~p~~-~~~  534 (573)
                      ++..+++.|++-+|++..+..|....++.   ..+.--|.++.++.           -...+++.|.++..+.|+. ..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56788999999999999999999887765   66677788876543           2357899999999999997 477


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          535 CAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       535 ~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      +.+++-......|+++++.-++.+++..
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~~  109 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSVTN  109 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcccC
Confidence            7777766666777777777777766543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.94  E-value=0.022  Score=36.05  Aligned_cols=31  Identities=16%  Similarity=-0.020  Sum_probs=27.9

Q ss_pred             HHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHH
Q 008244          521 CTKAINLDKKVR-LICAEAQQERCLDITRRQL  551 (573)
Q Consensus       521 ~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al  551 (573)
                      |++||+++|++. +++.+|.++...+++++|.
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            789999999994 9999999999999988875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.73  E-value=0.23  Score=39.96  Aligned_cols=59  Identities=17%  Similarity=0.125  Sum_probs=49.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          473 QAYKDKQWLKAISFYTEAIKLNGN---------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       473 ~~~~~~~~~~Ai~~y~~ai~~~p~---------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      ...+.++|.+|++.+.+..+....         ...+..++|.++..+|++++|++.+++|+++-...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            346789999999998888876432         14678899999999999999999999999987553

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.69  E-value=0.35  Score=44.61  Aligned_cols=102  Identities=22%  Similarity=0.192  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      .....+...+..+...+++++|+..+.++++..+. ....+.+++.++...+++++|+..+.++++..|.. ......+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  244 (291)
T COG0457         165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL  244 (291)
T ss_pred             chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHH
Confidence            44566666777788999999999999999999999 79999999999999999999999999999999983 34444444


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .....+.++++...+.......|.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         245 LLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc
Confidence            444445677777777777766653

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.64  E-value=0.38  Score=45.05  Aligned_cols=103  Identities=15%  Similarity=0.097  Sum_probs=77.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---  530 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~---  530 (573)
                      .|+.+..-.+++-...+..+.++|++.|++++.+-.++      ...+...+.+|.++++|.||-..+.+-..+.-.   
T Consensus       106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~  185 (308)
T KOG1585|consen  106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA  185 (308)
T ss_pred             CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence            45667777788888889999999999999999764332      577888899999999999998888775433211   


Q ss_pred             ----cHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          531 ----VRLICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       531 ----~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                          .+++...-.++...+.|..+-+.|....++..
T Consensus       186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~  221 (308)
T KOG1585|consen  186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA  221 (308)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence                13454555566667899999999988766653

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.59  E-value=0.68  Score=39.27  Aligned_cols=69  Identities=6%  Similarity=0.003  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHH-hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          464 AEIAKEKGNQAYKD---KQWLKAISFYTEAIK-LNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       464 ~~~~~~~g~~~~~~---~~~~~Ai~~y~~ai~-~~p~-~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      .+..++.+..+.+.   .+-++-|.+++..++ -.|. .-.+.+.++..++++++|++++++++..|+.+|+|+
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            45566777777665   455778999999997 3343 457888899999999999999999999999999985

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=0.45  Score=45.98  Aligned_cols=98  Identities=15%  Similarity=0.082  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK--------------------  523 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~--------------------  523 (573)
                      .+....++..+...+++.+|...+..+++..|++..+...++.||...|+.++|...+..                    
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            344566788888999999999999999999999999999999999999999777654442                    


Q ss_pred             --------------HHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244          524 --------------AINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       524 --------------al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                                    .+..||++ .+.+.++..+...++.++|+..+-...+.+
T Consensus       214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d  266 (304)
T COG3118         214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD  266 (304)
T ss_pred             HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence                          12235654 467777888888888888888776555443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.50  E-value=0.24  Score=34.91  Aligned_cols=42  Identities=14%  Similarity=0.078  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008244          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA  507 (573)
Q Consensus       466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~  507 (573)
                      -++.++..+++.|+|++|.++.+.+|+++|+|..+..-+..+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            456788899999999999999999999999998876654443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.46  E-value=0.26  Score=47.24  Aligned_cols=76  Identities=16%  Similarity=0.183  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      .....+.-..+.+.++++.|..+-++.|.++|+++.-+..||.+|.++|-+.-|++|+...++..|+.. +.+.+.+
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            334556777889999999999999999999999999999999999999999999999999999999985 3333333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=94.42  E-value=0.52  Score=50.19  Aligned_cols=97  Identities=12%  Similarity=-0.001  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH-HHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLIC-AEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~-~~~~  539 (573)
                      |.....|..+|.++-+.++.+.|.+.|.+.++..|+...+|..++..-.+.|+.-.|...++++.-.||++..++ ..-+
T Consensus       682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir  761 (913)
T KOG0495|consen  682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR  761 (913)
T ss_pred             CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence            445566888999999999999999999999999999999999999999999999999999999999999985333 3333


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 008244          540 QERCLDITRRQLKIFHMH  557 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~  557 (573)
                      .....+..+.|-....++
T Consensus       762 ~ElR~gn~~~a~~lmakA  779 (913)
T KOG0495|consen  762 MELRAGNKEQAELLMAKA  779 (913)
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            333334444443333333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=0.91  Score=43.22  Aligned_cols=61  Identities=16%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       477 ~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      .+++++|.-.|++--+..+..+......+.|++.+++|++|....+.||..+++++ .+..+
T Consensus       186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl  247 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL  247 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            46799999999999998889999999999999999999999999999999999985 44333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.41  E-value=0.98  Score=44.53  Aligned_cols=101  Identities=12%  Similarity=0.023  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH----HHHHH
Q 008244          463 SAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR----LICAE  537 (573)
Q Consensus       463 ~~~~~~~~g~~~~~-~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~----~~~~~  537 (573)
                      ....|...+...++ .++.+.|...|+.+++..|.+..+|......+.++++.+.|...|++++..-|...    .+...
T Consensus        34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~  113 (280)
T PF05843_consen   34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKF  113 (280)
T ss_dssp             -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            45678888888777 67777799999999999999999999999999999999999999999999876653    44444


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .+.+...|..+...+.+.+...+-|.
T Consensus       114 i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen  114 IEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            56666666666666666665555443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.25  E-value=0.39  Score=49.14  Aligned_cols=100  Identities=17%  Similarity=0.193  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      ...|..-|.=-..+++++.|...|.+||..+..+..+|...+.+-++.+....|-..+++|+.+=|.- ...|......+
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34455555555678889999999999999999999999999999999999999999999999999985 57777778888


Q ss_pred             HHHHHHHHHHHHhhccccCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .++.+.-+-+.|++=..|+|.
T Consensus       153 ~LgNi~gaRqiferW~~w~P~  173 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEPD  173 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCCc
Confidence            889999999999988888885

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.14  E-value=0.32  Score=48.08  Aligned_cols=128  Identities=10%  Similarity=0.082  Sum_probs=63.1

Q ss_pred             ceeEEEeccCCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHH----HH
Q 008244          416 TSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE----AI  491 (573)
Q Consensus       416 vGlq~~~~~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~----ai  491 (573)
                      -|+|+...+..+..|......++..-....+                 ...+--...+..+.|.|++++..---    +.
T Consensus        12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~R-----------------f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~   74 (518)
T KOG1941|consen   12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGR-----------------FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR   74 (518)
T ss_pred             HHHhHhcCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3555666665555555555555533221111                 11112233344455555555543222    22


Q ss_pred             HhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          492 KLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV------RLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       492 ~~~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                      +.+..  ...+|.|++..+.++.+|.+++.+++..+.+....      ......+.++..++.++++++.|+.++.+
T Consensus        75 ~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~  151 (518)
T KOG1941|consen   75 ELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY  151 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            22211  13566666666666666666666666666653221      23444555555566666666666655544

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.07  E-value=0.38  Score=56.17  Aligned_cols=91  Identities=10%  Similarity=0.003  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKVRLICAEAQQE  541 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l--~p~~~~~~~~~~~~  541 (573)
                      ..+..+...|.+.|++++|++.|++..+.+ +.+...|..+-.+|.+.|++++|++.|++..+.  .|+...+......+
T Consensus       580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~  659 (1060)
T PLN03218        580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA  659 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            344445555566666666666666655554 234455555555555555555555555555543  34433333333333


Q ss_pred             HHHHHHHHHHHHHh
Q 008244          542 RCLDITRRQLKIFH  555 (573)
Q Consensus       542 ~~~~~~~~al~~~~  555 (573)
                      ...+.+++|++.|+
T Consensus       660 ~k~G~~eeA~~l~~  673 (1060)
T PLN03218        660 GHAGDLDKAFEILQ  673 (1060)
T ss_pred             HhCCCHHHHHHHHH
Confidence            33334444444443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.72  E-value=1.2  Score=41.76  Aligned_cols=69  Identities=22%  Similarity=0.091  Sum_probs=56.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~  528 (573)
                      -...+..+.+-++.+...++|++|-.++.+|++-..++      +.+|-..++...++..+.|+...|++|..+.
T Consensus        27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY  101 (308)
T ss_pred             chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34457788888888888999999999999999766554      4677777888888999999999999998875

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=93.71  E-value=0.23  Score=56.02  Aligned_cols=90  Identities=13%  Similarity=0.030  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKVRLICAEAQQER  542 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l--~p~~~~~~~~~~~~~  542 (573)
                      ..+..+...|.+.|++++|.+.|++..+   .+...|+.+...|.+.|+.++|++.|++.++.  .|+...+......+.
T Consensus       361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~  437 (697)
T PLN03081        361 VANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR  437 (697)
T ss_pred             eehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence            3444556666666666666666665432   24455666666666666666666666665543  355544444444444


Q ss_pred             HHHHHHHHHHHHhhc
Q 008244          543 CLDITRRQLKIFHMH  557 (573)
Q Consensus       543 ~~~~~~~al~~~~~~  557 (573)
                      ..+..+++++.|+..
T Consensus       438 ~~g~~~~a~~~f~~m  452 (697)
T PLN03081        438 YSGLSEQGWEIFQSM  452 (697)
T ss_pred             cCCcHHHHHHHHHHH
Confidence            445555555555544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=93.50  E-value=0.34  Score=48.47  Aligned_cols=94  Identities=14%  Similarity=0.095  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE  541 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~  541 (573)
                      ...+.--+...-+.|+++.|-.+..++-++.++ .-..+..|+..+...+++..|....+++++..|.++ .+....+++
T Consensus       118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y  197 (400)
T COG3071         118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAY  197 (400)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            444555556667778888888888888887544 346667788888888888888888888888888886 333344667


Q ss_pred             HHHHHHHHHHHHHhhc
Q 008244          542 RCLDITRRQLKIFHMH  557 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~  557 (573)
                      ...++|.+.++....-
T Consensus       198 ~~~g~~~~ll~~l~~L  213 (400)
T COG3071         198 IRLGAWQALLAILPKL  213 (400)
T ss_pred             HHhccHHHHHHHHHHH
Confidence            7778887777776543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.33  E-value=0.33  Score=50.81  Aligned_cols=65  Identities=18%  Similarity=0.183  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      ..++++.+.+.+-..+|-..+.++|.++...+..++..|..|+.+.+.+.|++.+++|++++|++
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~  709 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKC  709 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence            45667777777777777777777777777777777777777777777777777777777777776

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.29  E-value=0.68  Score=48.81  Aligned_cols=108  Identities=16%  Similarity=-0.079  Sum_probs=84.7

Q ss_pred             CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCcH--
Q 008244          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK-AINLDKKVR--  532 (573)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~-al~l~p~~~--  532 (573)
                      ....+++-....+ +...+...+....++.....++..+|+++.++.|++.++...+....++.+..+ +.+..|++.  
T Consensus        60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~  138 (620)
T COG3914          60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEF  138 (620)
T ss_pred             cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHH
Confidence            3445555555555 677777788988999999999999999999999999999998887776666655 888889872  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          533 -----LICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       533 -----~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                           .++..++....++...++....+....+.|..
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~  175 (620)
T COG3914         139 LGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY  175 (620)
T ss_pred             HhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence                 33446788888888888888888888777755

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.27  E-value=0.21  Score=32.81  Aligned_cols=31  Identities=16%  Similarity=0.261  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN  494 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~  494 (573)
                      +..+.++|..|...|+|++|+..+++++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4578899999999999999999999999874

>PRK04841 transcriptional regulator MalT; Provisional

Probab=93.25  E-value=1  Score=52.50  Aligned_cols=97  Identities=10%  Similarity=-0.036  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-------
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-------  531 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-------  531 (573)
                      .......+..++..|++++|...++++++..+..     ..++.++|.++...|++++|+..+++++.+....       
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            4445568888999999999999999999865542     2567889999999999999999999999875432       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          532 RLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                      ..+...+.++...+++++|...++.+..+
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            24455566777777788887777766553

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.22  E-value=1  Score=37.34  Aligned_cols=64  Identities=14%  Similarity=0.009  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAI-------KLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai-------~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l  527 (573)
                      +-.+--+...+...|+|++++..-.++|       +++.+.    ..+-++|+.++..+|+.++|+..|+++.+.
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            4455667888899999999888877777       445554    356689999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PLN03077 Protein ECB2; Provisional

Probab=93.18  E-value=0.36  Score=55.84  Aligned_cols=92  Identities=8%  Similarity=-0.025  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHHH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAIN---LDKKVRLICAEAQ  539 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~---l~p~~~~~~~~~~  539 (573)
                      ..|..+...|.+.|+.++|++.|++.++.  .|+... |..+-.++.+.|++++|.+.|++..+   +.|+...+.....
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            34445555555555555555555554442  233322 22233344455555555555555542   2344444444444


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 008244          540 QERCLDITRRQLKIFHMH  557 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~  557 (573)
                      .+...+.+++|.+.++..
T Consensus       634 ~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC
Confidence            444445555555555543

>PLN03218 maturation of RBCL 1; Provisional

Probab=93.17  E-value=0.75  Score=53.81  Aligned_cols=95  Identities=14%  Similarity=0.020  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCcHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-NNATYYSNRAAAYLESGSFLQAEADCTKAIN----LDKKVRLICAEA  538 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p-~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~----l~p~~~~~~~~~  538 (573)
                      ...|..+...|.+.|++++|++.|.+..+..- -+...|+.+-.+|.+.|++++|++.+++..+    +.|+...+....
T Consensus       507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI  586 (1060)
T PLN03218        507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM  586 (1060)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence            34455555566666666666666665544321 1344555555666666666666666665543    345543333333


Q ss_pred             HHHHHHHHHHHHHHHHhhcc
Q 008244          539 QQERCLDITRRQLKIFHMHW  558 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~  558 (573)
                      ..+...+.+++|++.|+...
T Consensus       587 ~ay~k~G~ldeA~elf~~M~  606 (1060)
T PLN03218        587 KACANAGQVDRAKEVYQMIH  606 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            33334445555555555443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.10  E-value=0.84  Score=42.57  Aligned_cols=101  Identities=18%  Similarity=0.149  Sum_probs=76.1

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG------NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-  531 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p------~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-  531 (573)
                      ...+.++.+.+-+|.|--.+++..|=..|-++-+..-      +-+..|...+.||-+. +..+|+++.++++++-.+. 
T Consensus        29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~G  107 (288)
T KOG1586|consen   29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMG  107 (288)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhh
Confidence            4455667777777888888999999999988876532      2368888888998555 9999999999999997663 


Q ss_pred             ------HHHHHHHHHHHHH-HHHHHHHHHHhhcccc
Q 008244          532 ------RLICAEAQQERCL-DITRRQLKIFHMHWSW  560 (573)
Q Consensus       532 ------~~~~~~~~~~~~~-~~~~~al~~~~~~~~~  560 (573)
                            +.+...++.++.- ..+++++.+|+++-.|
T Consensus       108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen  108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence                  2344456666655 7788888888877654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.05  E-value=4.6  Score=38.48  Aligned_cols=68  Identities=13%  Similarity=0.117  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCcCc
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG--------SFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~--------~~~~Al~~~~~al~l~p~~  531 (573)
                      -+....++..+++.++|++|+...++-|.+.|++   .-+++-+|.+++..-        --.+|+.++++.++.-|+.
T Consensus        71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105          71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence            4667889999999999999999999999999876   578888999987632        2378889999999999996

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.97  E-value=0.17  Score=32.79  Aligned_cols=30  Identities=30%  Similarity=0.358  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244          499 TYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (573)
Q Consensus       499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~  528 (573)
                      ..|..+|.+-+..++|++|+.||+++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            456778888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.81  E-value=0.67  Score=46.37  Aligned_cols=96  Identities=17%  Similarity=0.177  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244          467 AKEKGNQAYKDKQWLKAISFYTEAIKL---NGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE  537 (573)
Q Consensus       467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~---~p~~-----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~  537 (573)
                      +...-...+..|+++.|++..+...+.   .++.     +.++.-.++.... -+...|..+..++++|.|++ ++...-
T Consensus       191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~A  269 (531)
T COG3898         191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVA  269 (531)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHH
Confidence            334445668899999999998776543   3332     3444444444433 35899999999999999998 466666


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +..+...+...++-+.++.+|+..|+
T Consensus       270 Aralf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         270 ARALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             HHHHHhccchhhhhhHHHHHHhcCCC
Confidence            77777779999999999999999986

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.49  E-value=0.88  Score=44.65  Aligned_cols=101  Identities=9%  Similarity=-0.104  Sum_probs=62.5

Q ss_pred             ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----H
Q 008244          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-----R  532 (573)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-----~  532 (573)
                      ...|-..-.+--.+-.+.+.|-|.+|.+.-++++++++.+..+....|.++...++++|+.+...+--....+.     .
T Consensus       169 ~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH  248 (491)
T KOG2610|consen  169 ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH  248 (491)
T ss_pred             CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence            33333333333345555677777888877788888887777777777777777777777777666543332222     1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244          533 LICAEAQQERCLDITRRQLKIFHMHW  558 (573)
Q Consensus       533 ~~~~~~~~~~~~~~~~~al~~~~~~~  558 (573)
                      -++.-+.++..-..|+.++.+|+...
T Consensus       249 NyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  249 NYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hhHHHHHhhhcccchhHHHHHHHHHH
Confidence            33333444444477888888887543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.42  E-value=1.1  Score=49.43  Aligned_cols=95  Identities=13%  Similarity=-0.034  Sum_probs=78.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCc-HHHHHHHHHHHHHH
Q 008244          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKV-RLICAEAQQERCLD  545 (573)
Q Consensus       468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-p~~-~~~~~~~~~~~~~~  545 (573)
                      ..--......++|++|+....+.++..|+...+..-.|..++++|++++|. -|-+++..- +++ ..+.....++.-++
T Consensus        13 ~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~l~~~y~d~~   91 (932)
T KOG2053|consen   13 LRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQFLQNVYRDLG   91 (932)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence            334445567899999999999999999999999999999999999999999 555555544 444 35555667788889


Q ss_pred             HHHHHHHHHhhccccCCC
Q 008244          546 ITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       546 ~~~~al~~~~~~~~~~~~  563 (573)
                      ..+++...|+++.+..|.
T Consensus        92 ~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   92 KLDEAVHLYERANQKYPS  109 (932)
T ss_pred             hhhHHHHHHHHHHhhCCc
Confidence            999999999999999887

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.06  E-value=2  Score=44.66  Aligned_cols=60  Identities=7%  Similarity=-0.136  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244          498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEAQQERCLDITRRQLKIFHMH  557 (573)
Q Consensus       498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~al~~~~~~  557 (573)
                      .-+..++|+|.-++|+.+||++.++..++.+|..   ...+.+.+++..++++.++.+.+.+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            3555678999999999999999999999998873   25666666666666666666665553

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.05  E-value=0.84  Score=48.54  Aligned_cols=88  Identities=15%  Similarity=-0.032  Sum_probs=76.7

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHHHHHHH
Q 008244          476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-----RLICAEAQQERCLDITRRQ  550 (573)
Q Consensus       476 ~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~a  550 (573)
                      ...+.+.|.+...+..+..|+....++..|..+...|+.++|++.+++++....+.     -.++.++-++..+.+|++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            45677889999999999999999999999999999999999999999999655444     2677788889999999999


Q ss_pred             HHHHhhccccCCC
Q 008244          551 LKIFHMHWSWSPP  563 (573)
Q Consensus       551 l~~~~~~~~~~~~  563 (573)
                      .+.|..-.+.+.+
T Consensus       325 ~~~f~~L~~~s~W  337 (468)
T PF10300_consen  325 AEYFLRLLKESKW  337 (468)
T ss_pred             HHHHHHHHhcccc
Confidence            9999988776665

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=92.03  E-value=1  Score=52.50  Aligned_cols=95  Identities=11%  Similarity=-0.002  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-------
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-------  531 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-------  531 (573)
                      ..+...|..+...|++++|...|.++++.....      ...+.++|.+++..|++++|...+++++++....       
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            344555666666666666666666666542211      2344555666666666666666666665542110       


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          532 --RLICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       532 --~~~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                        ..+..++.++...+++++|...+..+..
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~  601 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLE  601 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence              1222334444444555555555554443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=91.71  E-value=1  Score=50.87  Aligned_cols=95  Identities=8%  Similarity=-0.073  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--KKVRLICAEAQ  539 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~--p~~~~~~~~~~  539 (573)
                      +...|..+...|.+.|++++|++.|++..+.. .-+...|..+-.+|.+++++++|.+.+.++++..  |+...+..+..
T Consensus       289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~  368 (697)
T PLN03081        289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD  368 (697)
T ss_pred             ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence            45678888899999999999999998877643 2245567778888888888888888888877764  33333333444


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 008244          540 QERCLDITRRQLKIFHMH  557 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~  557 (573)
                      .+...+.+++|.+.|+..
T Consensus       369 ~y~k~G~~~~A~~vf~~m  386 (697)
T PLN03081        369 LYSKWGRMEDARNVFDRM  386 (697)
T ss_pred             HHHHCCCHHHHHHHHHhC
Confidence            444445566666666544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.60  E-value=0.3  Score=50.04  Aligned_cols=82  Identities=18%  Similarity=0.121  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------c---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-L--------N---------GNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~-~--------~---------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a  524 (573)
                      ....|+++|-++|+.+.|+-++..|.+|++ .        .         -....+.||.|..|+..|+..+|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            456788999999999999999999999996 1        1         123689999999999999999999999999


Q ss_pred             HHhCcCcH-HHHHHHHHHHHH
Q 008244          525 INLDKKVR-LICAEAQQERCL  544 (573)
Q Consensus       525 l~l~p~~~-~~~~~~~~~~~~  544 (573)
                      ++.--.++ .+.+++++....
T Consensus       362 v~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHHH
Confidence            99876664 666677766543

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=91.55  E-value=0.16  Score=49.98  Aligned_cols=67  Identities=19%  Similarity=0.059  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      ...+.+...++.+.+..|+.....+++.+++...+|+.|++.|+.+.++++|+++...+...+|++.
T Consensus       277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~  343 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK  343 (372)
T ss_pred             cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence            3344777788999999999999999999999999999999999999999999999999999999985

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=90.95  E-value=2  Score=39.76  Aligned_cols=61  Identities=16%  Similarity=0.084  Sum_probs=56.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       471 g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      ...+.+.++.++||....+-++-+|.+......+-..|.-.|+|++|+..++-+-++.|++
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            4567889999999999999999999999988888899999999999999999999999998

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=90.88  E-value=0.46  Score=49.25  Aligned_cols=79  Identities=14%  Similarity=-0.057  Sum_probs=66.4

Q ss_pred             CCCCCccChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008244          453 LSTNTFNQKQSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (573)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p  529 (573)
                      ++......+.....+.+++..+++.   ++.-.|+..+..|++++|....+|+.++.|+..++++.+|+++...+....|
T Consensus       397 ~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  397 YSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             HHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence            3334444556777888888888774   6778899999999999999999999999999999999999999888888888


Q ss_pred             Cc
Q 008244          530 KV  531 (573)
Q Consensus       530 ~~  531 (573)
                      .+
T Consensus       477 td  478 (758)
T KOG1310|consen  477 TD  478 (758)
T ss_pred             hh
Confidence            54

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.72  E-value=2.1  Score=42.13  Aligned_cols=89  Identities=12%  Similarity=0.032  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~-~p~~~---~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      ...++..=..++-.|+...-...+.+.|.. +++.+   -..-..+.++..+|-|++|.+..++++++||.+ -+...++
T Consensus       137 lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~a  216 (491)
T KOG2610|consen  137 LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKA  216 (491)
T ss_pred             hhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHH
Confidence            333333344444445555555555555544 44432   222334445555555555555555555555554 2333444


Q ss_pred             HHHHHHHHHHHHHH
Q 008244          539 QQERCLDITRRQLK  552 (573)
Q Consensus       539 ~~~~~~~~~~~al~  552 (573)
                      -+++..+++.++.+
T Consensus       217 HVlem~~r~Keg~e  230 (491)
T KOG2610|consen  217 HVLEMNGRHKEGKE  230 (491)
T ss_pred             HHHHhcchhhhHHH
Confidence            44444444444443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=90.68  E-value=0.74  Score=48.38  Aligned_cols=91  Identities=14%  Similarity=0.050  Sum_probs=79.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHH
Q 008244          475 YKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLK  552 (573)
Q Consensus       475 ~~~~~~~~Ai~~y~~ai~~~p~~-~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~  552 (573)
                      .-+|+...|+.|+..|+-..|.. ..-..|+|+++++.+-..+|-....++|.++-..+ .++.++..+..+.....|++
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence            45799999999999999999854 46678999999999999999999999999994443 77788999999999999999


Q ss_pred             HHhhccccCCCCC
Q 008244          553 IFHMHWSWSPPIK  565 (573)
Q Consensus       553 ~~~~~~~~~~~~~  565 (573)
                      .|..+.++.|...
T Consensus       698 ~~~~a~~~~~~~~  710 (886)
T KOG4507|consen  698 AFRQALKLTTKCP  710 (886)
T ss_pred             HHHHHHhcCCCCh
Confidence            9999999888544

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.58  E-value=0.46  Score=30.84  Aligned_cols=30  Identities=17%  Similarity=0.384  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN  494 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~  494 (573)
                      +.+..+|.+-+..++|++|++.|.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            457789999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=90.44  E-value=2.1  Score=42.20  Aligned_cols=98  Identities=10%  Similarity=-0.098  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHH
Q 008244          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKVR-LICAEAQQERC  543 (573)
Q Consensus       466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~-l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~  543 (573)
                      .|.+..+...+.+..+.|...|.+|++..+.....|..-|..-+. .++.+.|.+.|+.+++.-|.+. ........+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            456666777777779999999999997666778889988988667 4566669999999999999984 44445566677


Q ss_pred             HHHHHHHHHHHhhccccCCC
Q 008244          544 LDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       544 ~~~~~~al~~~~~~~~~~~~  563 (573)
                      ++..+.+-..|+++...-+.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPK  102 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSC
T ss_pred             hCcHHHHHHHHHHHHHhcCc
Confidence            78999999999999876553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03077 Protein ECB2; Provisional

Probab=90.41  E-value=1.5  Score=50.75  Aligned_cols=87  Identities=8%  Similarity=-0.003  Sum_probs=56.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHH
Q 008244          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--LDKKVRLICAEAQQERCLD  545 (573)
Q Consensus       468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~--l~p~~~~~~~~~~~~~~~~  545 (573)
                      ..+-..|.+.|++++|.+.|++.    +.+...|+.+-..|.+.|+.++|++.|++..+  +.|+...+......+...+
T Consensus       528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g  603 (857)
T PLN03077        528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG  603 (857)
T ss_pred             hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence            34556667777777777777664    45666777777777777777777777777665  3466544444444444456


Q ss_pred             HHHHHHHHHhhcc
Q 008244          546 ITRRQLKIFHMHW  558 (573)
Q Consensus       546 ~~~~al~~~~~~~  558 (573)
                      .++++++.|+...
T Consensus       604 ~v~ea~~~f~~M~  616 (857)
T PLN03077        604 MVTQGLEYFHSME  616 (857)
T ss_pred             hHHHHHHHHHHHH
Confidence            6777777776543

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.83  E-value=1.7  Score=33.01  Aligned_cols=31  Identities=26%  Similarity=0.187  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL  493 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~  493 (573)
                      .+..+..++..+-+.|+|++||.+|+++|++
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4566677777777888888888877666653

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.72  E-value=1.2  Score=28.47  Aligned_cols=31  Identities=23%  Similarity=0.204  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCcC
Q 008244          500 YYSNRAAAYLESGSFLQAEAD--CTKAINLDKK  530 (573)
Q Consensus       500 ~~~n~a~~~~~l~~~~~Al~~--~~~al~l~p~  530 (573)
                      .++..|.++...|++++|++.  |+-+..+++.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            344555555555555555555  3355555543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.68  E-value=2.2  Score=43.22  Aligned_cols=95  Identities=14%  Similarity=0.007  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 008244          433 TVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIA--KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE  510 (573)
Q Consensus       433 ~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~  510 (573)
                      .+..|..+|.-...............++-.....+  -++..+|++.++.+.|+....+.|-++|....-+..+|.|+..
T Consensus       195 Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~  274 (569)
T PF15015_consen  195 AAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRR  274 (569)
T ss_pred             HHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHH
Confidence            33444444444444433333333333333333333  4578899999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHh
Q 008244          511 SGSFLQAEADCTKAINL  527 (573)
Q Consensus       511 l~~~~~Al~~~~~al~l  527 (573)
                      +.+|.+|.+.+.-+.-+
T Consensus       275 LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  275 LERYSEAARSAMIADYM  291 (569)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988777543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.51  E-value=8.6  Score=36.11  Aligned_cols=77  Identities=18%  Similarity=0.095  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244          462 QSAEIAKEKGNQAYKDKQ-------WLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~-------~~~Ai~~y~~ai~~~p~------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~  528 (573)
                      ..+..+...+..+-..++       ++.|++.|.++++....      ...+.+-+|..+.++|++++|++.|.+++...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            556667777777766666       46677777777765532      36788889999999999999999999999876


Q ss_pred             cCcH--HHHHHH
Q 008244          529 KKVR--LICAEA  538 (573)
Q Consensus       529 p~~~--~~~~~~  538 (573)
                      -...  .+..++
T Consensus       196 ~~s~~~~l~~~A  207 (214)
T PF09986_consen  196 KASKEPKLKDMA  207 (214)
T ss_pred             CCCCcHHHHHHH
Confidence            4443  444443

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.19  E-value=8  Score=29.66  Aligned_cols=32  Identities=19%  Similarity=0.313  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL  493 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~  493 (573)
                      ..+..+..++..+=+.|+|++|+.+|.++|+.
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            44667777888888888888888887666543

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.04  E-value=4.6  Score=41.54  Aligned_cols=59  Identities=12%  Similarity=0.090  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  523 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~  523 (573)
                      .......+.-+|.+|+|.++..+.....+++| ++.+|.-+|.|++..++|+||..++..
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            44556677788999999999999999999999 999999999999999999999988764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.68  E-value=7  Score=38.10  Aligned_cols=66  Identities=14%  Similarity=0.036  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l  527 (573)
                      .....+.++...+...++++.++..+++.|..+|-+-.+|..+=..|++.|+...|+..|++.-++
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            457788889999999999999999999999999999999999999999999999999999987663

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=88.48  E-value=10  Score=39.29  Aligned_cols=88  Identities=17%  Similarity=0.112  Sum_probs=58.5

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHH
Q 008244          475 YKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQ  550 (573)
Q Consensus       475 ~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~a  550 (573)
                      ....+.+.+.+.|+.+|++-|..    +..|...|+-..+..+...|-+.+-.|+.+.|..+.....-+....+..++..
T Consensus       377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRc  456 (677)
T KOG1915|consen  377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRC  456 (677)
T ss_pred             HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHH
Confidence            45577788888888888887753    56777777777777777777777777777777665554445555555555555


Q ss_pred             HHHHhhccccCC
Q 008244          551 LKIFHMHWSWSP  562 (573)
Q Consensus       551 l~~~~~~~~~~~  562 (573)
                      -+.|++-+.++|
T Consensus       457 RkLYEkfle~~P  468 (677)
T KOG1915|consen  457 RKLYEKFLEFSP  468 (677)
T ss_pred             HHHHHHHHhcCh
Confidence            556655555555

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=88.46  E-value=2.2  Score=34.98  Aligned_cols=65  Identities=14%  Similarity=0.188  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244          464 AEIAKEKGNQAYKDK-----------QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~-----------~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~  528 (573)
                      ...+..+|..+++..           -...++++|+++..+.|+.+..++++|.-+-....|++++.-|+++|.+.
T Consensus        33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            356667777775432           23568999999999999999999999998888888999999999999864

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=88.29  E-value=2.7  Score=33.42  Aligned_cols=65  Identities=5%  Similarity=0.001  Sum_probs=45.0

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTK  523 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~--~~~~~n~a~~~~~l~~~~~Al~~~~~  523 (573)
                      .+|++....+.++..++..|+|++|++.+-+.++.+++.  ..+.-.+=.++-.+|.-+.-...|++
T Consensus        17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen   17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR   83 (90)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            346788999999999999999999999999999998765  45555555555556655444444444

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.07  E-value=0.67  Score=27.09  Aligned_cols=24  Identities=25%  Similarity=0.007  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 008244          499 TYYSNRAAAYLESGSFLQAEADCT  522 (573)
Q Consensus       499 ~~~~n~a~~~~~l~~~~~Al~~~~  522 (573)
                      .+++++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356777777777777777777654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=87.89  E-value=2.2  Score=41.35  Aligned_cols=59  Identities=14%  Similarity=0.061  Sum_probs=53.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          508 YLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       508 ~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      ..+.|+.++|...|+.|++++|++. .+...++..+..+.+-+|-++|-+++.++|...|
T Consensus       126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse  185 (472)
T KOG3824|consen  126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE  185 (472)
T ss_pred             HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence            4478999999999999999999995 8888899999889999999999999999997655

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.68  E-value=2  Score=27.49  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhcCCC
Q 008244          465 EIAKEKGNQAYKDKQWLKAISF--YTEAIKLNGNN  497 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~--y~~ai~~~p~~  497 (573)
                      +.+...|..++.+|+|++|++.  |.-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4567789999999999999999  54887777754

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PRK10941 hypothetical protein; Provisional

Probab=87.68  E-value=1.5  Score=42.64  Aligned_cols=65  Identities=15%  Similarity=0.056  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ....|+=.+|.+.++++.|+.+.+..+.++|++. ....+|.++..++.+..|+..++.-....|.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence            4567788899999999999999999999999996 4555899999999999999999888777764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.60  E-value=4.3  Score=36.98  Aligned_cols=67  Identities=19%  Similarity=0.067  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      +..-.+++.+.+++|++++|+..++..-..+ -.+..--.||.+++..|+-++|...|.++++.+++.
T Consensus       126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         126 ALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            4556678999999999999998765432211 123445669999999999999999999999998554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=85.67  E-value=22  Score=31.45  Aligned_cols=69  Identities=10%  Similarity=-0.011  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~  530 (573)
                      |+.++.-.-.|..+.+.|+|.+|+..++...+..|..+.+-.-++.|++.+++..= -.+.+++++-.++
T Consensus        41 P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~d  109 (160)
T PF09613_consen   41 PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGAD  109 (160)
T ss_pred             CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCCC
Confidence            33444445566666666666666666666666666666666666666666665321 1224555555544

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=85.37  E-value=17  Score=36.52  Aligned_cols=80  Identities=10%  Similarity=0.005  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH------HHHHHH-----HHHHHHHHHH
Q 008244          480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR------LICAEA-----QQERCLDITR  548 (573)
Q Consensus       480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~------~~~~~~-----~~~~~~~~~~  548 (573)
                      .+.-+..|++||+.+|++..++..+=.+..++.+-++..+-+++++..+|++.      ..+.+.     .+....+.|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            45667889999999999999999988899999999999999999999999873      222222     2345556777


Q ss_pred             HHHHHHhhccc
Q 008244          549 RQLKIFHMHWS  559 (573)
Q Consensus       549 ~al~~~~~~~~  559 (573)
                      ++++.+.....
T Consensus       127 ~~l~~L~~~~~  137 (321)
T PF08424_consen  127 KCLRALSRRRS  137 (321)
T ss_pred             HHHHHHHHhhc
Confidence            77777665443

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.94  E-value=19  Score=36.66  Aligned_cols=95  Identities=16%  Similarity=0.134  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cC--c
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD-------KK--V  531 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-------p~--~  531 (573)
                      -..+.+.|..|+..|+++.|+++|.++-+.+.+.   ...|.|.=.+-..+++|.+-+.+-.+|..--       +.  .
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            4567889999999999999999999977776543   4677788788888999999999888886651       11  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244          532 RLICAEAQQERCLDITRRQLKIFHMHW  558 (573)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~al~~~~~~~  558 (573)
                      +..+..+.++..++.++.|.+.|-...
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            466777788888899999999987654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=83.88  E-value=3.7  Score=38.55  Aligned_cols=91  Identities=15%  Similarity=0.059  Sum_probs=64.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHh----cCC---CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCcC--c-----
Q 008244          473 QAYKDKQWLKAISFYTEAIKL----NGN---NATYYSNRAAAYLESGS-------FLQAEADCTKAINLDKK--V-----  531 (573)
Q Consensus       473 ~~~~~~~~~~Ai~~y~~ai~~----~p~---~~~~~~n~a~~~~~l~~-------~~~Al~~~~~al~l~p~--~-----  531 (573)
                      .+.....+++|++.|.-||-.    ..+   -+.++..+|=+|-.+++       +..|++.|.+|++....  .     
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            334456677888887777742    111   25677777777777777       45677777777766532  1     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          532 RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ...|..|++...++.+++|.+.|.+.......
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            58888999999999999999999988765543

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=83.85  E-value=3.6  Score=35.67  Aligned_cols=52  Identities=15%  Similarity=0.093  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL  515 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~  515 (573)
                      .....+++...+..|+|+-|.+..+.++..+|++..+..-++.+|.+++.-.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            4556778888999999999999999999999999999999999987776543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=83.54  E-value=47  Score=36.05  Aligned_cols=135  Identities=13%  Similarity=0.053  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHH-HHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----------
Q 008244          429 FLLDTVQNMYASLQ-EQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-----------  496 (573)
Q Consensus       429 ~ll~~a~~le~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-----------  496 (573)
                      ....++.-+|.... +.++..+.......-..-.+.++.|.+-|...++.++++.|+...++|...-..           
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p  468 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP  468 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence            35566666665432 233444544444444444567889999999999999999999999988754211           


Q ss_pred             -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          497 -------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       497 -------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                             +...|...+.....+|-++..-..|++.+.|.--.+ .....|..++....++++.+.|++-.++-++
T Consensus       469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~  543 (835)
T KOG2047|consen  469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW  543 (835)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence                   246677777777788888888889999988874442 4455566677778889999999988876653

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=83.30  E-value=3  Score=31.15  Aligned_cols=31  Identities=26%  Similarity=0.295  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL  493 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~  493 (573)
                      .+..+.+.|..+-+.|+|++|+++|.++++.
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3555666677777777777777777666643

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.13  E-value=8.2  Score=29.36  Aligned_cols=49  Identities=14%  Similarity=0.026  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCcCcH-HHHHHHHHHHHHHHHH
Q 008244          500 YYSNRAAAYLESGSFLQAEADCTKA-------INLDKKVR-LICAEAQQERCLDITR  548 (573)
Q Consensus       500 ~~~n~a~~~~~l~~~~~Al~~~~~a-------l~l~p~~~-~~~~~~~~~~~~~~~~  548 (573)
                      -|..+|.-+-+.|++.+|+.+|+++       ++..|+.. ....+..+..++++.+
T Consensus         8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae   64 (75)
T cd02682           8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIE   64 (75)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            3444455555666666666666655       55678874 3334555555555544

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=82.67  E-value=4.7  Score=35.62  Aligned_cols=71  Identities=8%  Similarity=-0.183  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      ......+.+......+.++.+++...+...--+.|+.+..-.--|..++..|+|.+|+..++.+.+-.|.+
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~   77 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF   77 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence            45577788889999999999999999998889999999999999999999999999999999988888876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=82.66  E-value=19  Score=42.46  Aligned_cols=82  Identities=18%  Similarity=0.041  Sum_probs=36.8

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHHHHHHHH
Q 008244          475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEAQQERCLDITRRQL  551 (573)
Q Consensus       475 ~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~al  551 (573)
                      -+.+++++|.+.|++-++.--+....|...+..+++.++-++|-....+||+--|..   ...-..++.....+..+++-
T Consensus      1541 ~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGR 1620 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGR 1620 (1710)
T ss_pred             HHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhH
Confidence            334444444444444444444444445555555554444444444555554444442   12222233333334444444


Q ss_pred             HHHhh
Q 008244          552 KIFHM  556 (573)
Q Consensus       552 ~~~~~  556 (573)
                      ..|+-
T Consensus      1621 tlfEg 1625 (1710)
T KOG1070|consen 1621 TLFEG 1625 (1710)
T ss_pred             HHHHH
Confidence            44443

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.96  E-value=3.5  Score=31.52  Aligned_cols=31  Identities=23%  Similarity=0.286  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL  493 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~  493 (573)
                      .+..+..++..+=+.|+|++|+.+|.++|+.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4666777777888888888888888777764

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=81.94  E-value=2.7  Score=41.11  Aligned_cols=46  Identities=24%  Similarity=0.262  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244          483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (573)
Q Consensus       483 Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~  528 (573)
                      |..+|.+|+.+.|++...|+.+|..+...++.-+|+-+|-+++-..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~   46 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR   46 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence            6788999999999999999999999999999999999999988654

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=81.69  E-value=33  Score=38.60  Aligned_cols=97  Identities=15%  Similarity=0.016  Sum_probs=74.0

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--  531 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--  531 (573)
                      .....++..--.+.+....+++++|++..+.+++.-|.+     ..++.+.|.+..-.|++.+|+....++.++.-.+  
T Consensus       453 ~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~  532 (894)
T COG2909         453 QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV  532 (894)
T ss_pred             hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc
Confidence            334456666668888899999999999999999987765     5889999999999999999999999998886543  


Q ss_pred             -----HHHHHHHHHHHHHH--HHHHHHHHHh
Q 008244          532 -----RLICAEAQQERCLD--ITRRQLKIFH  555 (573)
Q Consensus       532 -----~~~~~~~~~~~~~~--~~~~al~~~~  555 (573)
                           ...+.++++....|  .+++..+.|.
T Consensus       533 ~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~  563 (894)
T COG2909         533 YHLALWSLLQQSEILEAQGQVARAEQEKAFN  563 (894)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                 24455566666666  4444444444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=81.67  E-value=28  Score=34.02  Aligned_cols=58  Identities=7%  Similarity=-0.076  Sum_probs=44.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH---HHHHHHHHHHHHH
Q 008244          488 TEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR---LICAEAQQERCLD  545 (573)
Q Consensus       488 ~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~---~~~~~~~~~~~~~  545 (573)
                      .+.+..+|++..+-+.+|..|...|++++|++.+-..++.|-.+.   .....-++...++
T Consensus       226 ~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         226 QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            334456899999999999999999999999999999999987652   3333344444443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=81.06  E-value=15  Score=40.74  Aligned_cols=100  Identities=13%  Similarity=0.039  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhcCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEA----------IKLNGN----------NATYYSNRAAAYLESGSFLQAEADCTK  523 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~a----------i~~~p~----------~~~~~~n~a~~~~~l~~~~~Al~~~~~  523 (573)
                      -..|++.+..+-..++.+.|+++|+++          |.-+|.          +..+|.--|+-+...|+.+.|+..|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            345778888888889999999999874          233443          345555568888899999999999987


Q ss_pred             HHHhC---------------------cCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          524 AINLD---------------------KKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       524 al~l~---------------------p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      |-..-                     ..++ +-|.+++.++..+.+.+|.+.|-++-.++..
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnA  999 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNA  999 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            74331                     1123 6677889999999999999998877665543

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.49  E-value=10  Score=28.96  Aligned_cols=54  Identities=19%  Similarity=0.233  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C-cCc-HHHHHHHHHHHHHHHHHH
Q 008244          481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-------D-KKV-RLICAEAQQERCLDITRR  549 (573)
Q Consensus       481 ~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l-------~-p~~-~~~~~~~~~~~~~~~~~~  549 (573)
                      ..|++...+|++.|               +.|+|++|+..|.+++++       . ++. ..-..+..+..++++.+.
T Consensus         4 ~~Ai~~a~~Ave~D---------------~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~   66 (76)
T cd02681           4 RDAVQFARLAVQRD---------------QEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQA   66 (76)
T ss_pred             HHHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence            35666666666665               566677776666666543       2 222 222226666666665544

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	573
2dc0_A	434	Crystal Structure Of Amidase Length = 434		5e-17
2df4_A	485	Structure Of Trna-Dependent Amidotransferase Gatcab		8e-14
3h0l_A	478	Structure Of Trna-Dependent Amidotransferase Gatcab		3e-13
3al0_A	475	Crystal Structure Of The Glutamine Transamidosome F		4e-12
3kfu_E	471	Crystal Structure Of The Transamidosome Length = 47		8e-12
3a1i_A	521	Crystal Structure Of Rhodococcus Sp. N-771 Amidase		2e-11
3a1k_A	521	Crystal Structure Of Rhodococcus Sp. N771 Amidase L		2e-11
2gi3_A	476	Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf		4e-11
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		2e-10
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		3e-10
1wao_1	477	Pp5 Structure Length = 477		4e-10
4gyr_A	621	Granulibacter Bethesdensis Allophanate Hydrolase Ap		4e-10
1m21_A	503	Crystal Structure Analysis Of The Peptide Amidase P		8e-10
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-08
1obl_A	414	Crystal Structure Of The S133a Mutant Of Malonamida		5e-08
1o9o_A	414	Crystal Structure Of The S131a Mutant Of Malonamida		5e-08
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		1e-07
1ock_A	412	The Crystal Structure Of Malonamidase E2 From Brady		4e-07
1obk_A	414	Crystal Structure Of The R158q Mutant Of Malonamida		4e-07
1o9n_A	414	Crystal Structure Of The K62a Mutant Of Malonamidas		5e-07
1obj_A	414	Crystal Structure Of The T150a Mutant Of Malonamida		5e-07
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		5e-07
1o9q_A	414	Crystal Structure Of The S155c Mutant Of Malonamida		5e-07
1obi_A	414	Crystal Structure Of The G130a Mutant Of Malonamida		6e-07
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		1e-06
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		1e-06
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-06
3fwv_A	128	Crystal Structure Of A Redesigned Tpr Protein, T-Mo		2e-06
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		2e-06
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		3e-06
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-06
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		5e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		1e-05
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		1e-05
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		2e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-04
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		7e-04

>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 144/375 (38%), Gaps = 29/375 (7%)
Query: 60  GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYS 119
           GL   V DLF ++G  T  G                    L E GA    KT   E A  
Sbjct: 67  GLPLTVKDLFPVKGMPTRAG---TKAPLPPLPEEARAVRRLREAGALLFAKTNXHEIALG 123
Query: 120 INGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILG 179
           I G N       N   PS+                +   SLG DT G +R+P+ F G++G
Sbjct: 124 ITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVG 183
Query: 180 FRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL--QLPFAAQRSPRQIIIAD 237
           F+PSYG VS  G +P+S S D  G   R  +    +  +L    +P    ++P       
Sbjct: 184 FKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIPLEGVQNP------- 236
Query: 238 DCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL-GEYFDSKVPSLKGFHKTNGELKNV 296
               +  +P D +   +     K F R +     L  E  +  +P L+G ++        
Sbjct: 237 ----VFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP-LEGVYEV------Y 285
Query: 297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSL 356
            RL+ RYE    H + ++       P +   +   L ++E    +  + R  +R  +   
Sbjct: 286 TRLV-RYEAARIHEKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKA 344
Query: 357 LKDDGILVTPTTAYPPPKLGGKEMLSEDYQ---NRAFSLLSIA-SVSGCCQVTVPLGYYD 412
           L+    L+ P    P P LG +E+  E  +     AF  L++  S+ G   + +P    +
Sbjct: 345 LRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAKVE 404
Query: 413 KCPTSVSFIARHGGD 427
             P  +  +  +G D
Sbjct: 405 GXPVGLQVVGAYGED 419

>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%)
Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDT 164
           A  IGK  +DEFA   +    ++    NP     +P              LV  SLG DT
Sbjct: 116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDT 175
Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 210
            G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct: 176 GGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221

>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L + GA  +GKT +DEFA   +     +    NP    ++P                  S
Sbjct: 104 LKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVS 163
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G F R
Sbjct: 164 LGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGR 211

>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLG 161
           E G   +GK  +DEFA   +     +    NP    ++P              +V  +LG
Sbjct: 100 EAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALG 159
Query: 162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKILRHV 215
            DT G VR P++ CG++G++P+YG VS  G++  ++SLD +G      RD  IL  +
Sbjct: 160 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEI 216

>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 56/104 (53%)
Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGID 163
           GA  +GKT +DEF    +  +  +    NP  P ++P             DL   +LG D
Sbjct: 102 GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSD 161
Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           T G VR P+AFCG+ G +P+YG VS  G+I  ++SLD +G  AR
Sbjct: 162 TGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMAR 205

>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 54/375 (14%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L+  GAT  GK V ++  +S +          NP    +                 VDF+
Sbjct: 128 LLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFA 187
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 219
           +G D  G +R+P+AFCG++G +P++G V + G  PI  ++D +G       I R V    
Sbjct: 188 IGGDQGGAIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTVHDAA 241
Query: 220 LQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGE 274
           L L   A R    PRQ   + A D    L    D +   +++   + FG  V + E + +
Sbjct: 242 LMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE-VDD 297
Query: 275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKPALDP 322
              +   SL     T  E+ N+   +  +   N            + N +  + +   DP
Sbjct: 298 AVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDP 356
Query: 323 DISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISSLLKD 359
           ++ A      I     +SETV                      +++    R+A  + L+ 
Sbjct: 357 ELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQ 416
Query: 360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYDKCPT 416
             +LV PT  Y   +L  K++    +  +A  +++  +   V+G   ++VP G  +  P 
Sbjct: 417 FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPV 476
Query: 417 SVSFIARHGGDRFLL 431
            +    RH  D  +L
Sbjct: 477 GMMITGRHFDDATVL 491

>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 54/375 (14%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L+  GAT  GK V ++  +S +          NP    +                 VDF+
Sbjct: 128 LLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFA 187
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 219
           +G D  G +R+P+AFCG++G +P++G V + G  PI  ++D +G       I R V    
Sbjct: 188 IGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTVHDAA 241
Query: 220 LQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGE 274
           L L   A R    PRQ   + A D    L    D +   +++   + FG  V + E + +
Sbjct: 242 LMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE-VDD 297
Query: 275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKPALDP 322
              +   SL     T  E+ N+   +  +   N            + N +  + +   DP
Sbjct: 298 AVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDP 356
Query: 323 DISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISSLLKD 359
           ++ A      I     +SETV                      +++    R+A  + L+ 
Sbjct: 357 ELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQ 416
Query: 360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYDKCPT 416
             +LV PT  Y   +L  K++    +  +A  +++  +   V+G   ++VP G  +  P 
Sbjct: 417 FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPV 476
Query: 417 SVSFIARHGGDRFLL 431
            +    RH  D  +L
Sbjct: 477 GMMITGRHFDDATVL 491

>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLG 161
           E G   +GK  +DEFA   +     +    NP    ++P               V  +LG
Sbjct: 101 EAGFVVVGKANLDEFAXGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALG 160
Query: 162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKILRHV 215
            DT G VR P++ CG++G++P+YG VS  G++  ++SLD +G      RD  IL  +
Sbjct: 161 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEI 217

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 11  KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 522 TKAINLDKK 530
           T+AI LDKK
Sbjct: 71  TRAIELDKK 79

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 4   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 522 TKAINLDKK 530
           T+AI LDKK
Sbjct: 64  TRAIELDKK 72

>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 60  GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYS 119
           G+ FAV D  D+ G       P +                L   GA  +GKT +D+FA  
Sbjct: 97  GVPFAVKDNIDVAGLPCSAACPAFTYEPDRDATVVAR---LRAAGAIVLGKTNLDQFATG 153
Query: 120 INGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILG 179
           + GT   +  P        +               LV FSLG DT G  RVP+AF  ++G
Sbjct: 154 LVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVPAAFNNLVG 213
Query: 180 FRPSYGAVSHMGIIPISTSLDTVGWFA 206
            +P+ G +S  G++P   SLD V  FA
Sbjct: 214 VKPTKGLLSTSGVVPACRSLDCVTVFA 240

>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 137/374 (36%), Gaps = 78/374 (20%)
Query: 100 LVEGGATCIGKTVVDEFAY-----SINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXD 154
           L + GA  +GKT + E+A      SI+G +       NP   S  P             +
Sbjct: 117 LRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAAN 176
Query: 155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRH 214
           L   ++G +T G +  P+A  G++G +P+ G VS  GIIPIS S DT G  A      R 
Sbjct: 177 LASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMA------RS 230
Query: 215 VGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIK-STEKLFGRQV------- 266
           V      L   A R        D       +P   V     +   + L G+++       
Sbjct: 231 VADAAAVLTAIAGRD-------DADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL 283
Query: 267 LKHENLGEYFDSKVPSLK--GFHKTNGELKN------VMRLIQRYEFK-------NNHNE 311
           LK+  +    +     L+  G      EL N        R +  YEFK       N H  
Sbjct: 284 LKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHRA 343
Query: 312 WIESVKPALDPDISA--------EIG----EMLEISETVIENCKSIRNEMRSAISSLLKD 359
            + S+      D+ A        E+G    E+L  ++             RS    L   
Sbjct: 344 PLRSLA-----DLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGP 398
Query: 360 DGI-----------LVTPTTAYP-PPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVP 407
           +GI           LV PTT    P +  G +   E Y        S A+V+G   +TVP
Sbjct: 399 EGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESY--------SAAAVAGYPSLTVP 450
Query: 408 LGYYDKCPTSVSFI 421
           +G  D  P  + F+
Sbjct: 451 MGQIDGLPVGLLFM 464

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           AE  K +GN+  K + +  A+ FY +AI+LN  NA Y+ NRAAAY + G++  A  DC +
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 524 AINLD 528
           AI +D
Sbjct: 72  AICID 76

>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSAGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGASSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 459 NQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 517
           N    A IA K+ GN AYK K + KA   Y +AI+L+ +N T+Y+N+AA Y E   F + 
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 518 EADCTKAINLDKKVR 532
              C KA+ + ++ R
Sbjct: 62  VQFCEKAVEVGRETR 76

>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A + K KGN+ ++   + +A+  YTEAIK N  +A  YSNRAA Y +   F  A  DC +
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 524 AINLD 528
            I L+
Sbjct: 76  CIQLE 80

>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGASSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKVR 532
            ++ R
Sbjct: 68  GRENR 72

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKVR 532
            ++ R
Sbjct: 68  GRENR 72

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A+  K KGN+ +K   +  A+  Y EA+K +  NA  YSNRAA   +   F +A  DC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 524 AINLDKK 530
            I LD K
Sbjct: 73  CIRLDSK 79

>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy), In Complex With Meevf Peptide Length = 128

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KE GN AYK K +  A+  Y +A +L+  N TY  N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKVR 532
            ++ R
Sbjct: 68  GRENR 72

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC 
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 523 KAINLD 528
           +A+ LD
Sbjct: 68  RALELD 73

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KEKGN+A        A+  Y+EAIKL+ +N   YSNR+AAY + G + +A  D  K ++L
Sbjct: 8   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 523 KAINLD 528
           +A+ LD
Sbjct: 63  RALELD 68

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 430 LLDTVQNMYASLQEQ--ADIATK--------SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 479
           L  T++    SL E   ADI TK         K     +   + AE A+ +G + +    
Sbjct: 95  LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154
Query: 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC KAI  D
Sbjct: 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SAE  K  GN  YK   + KAI +Y +A++L+ NNA+ + N   AY + G + +A     
Sbjct: 8   SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 523 KAINLD 528
           KA+ LD
Sbjct: 68  KALELD 73

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 37/65 (56%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC K
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 524 AINLD 528
           AI  D
Sbjct: 64  AIEKD 68

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           K +GN A   K++ KAI  YT+A+ +   N  Y SNRAAAY  SG   +A  D   A  +
Sbjct: 15  KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 528 DKK 530
           D K
Sbjct: 75  DPK 77

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SAE     GN  YK   + +AI +Y +A++L+ NNA  + N   AY + G + +A     
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 523 KAINLDKKVRLICAEAQQ 540
           KA+ LD       AEA+Q
Sbjct: 68  KALELDPN----NAEAKQ 81

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SAE     GN  YK   + +AI +Y +A++L+ NNA  + N   AY + G + +A     
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 523 KAINLD 528
           KA+ LD
Sbjct: 68  KALELD 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	573
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	2e-50
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	6e-43
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	3e-38
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	8e-37
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	4e-04
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	4e-36
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	6e-34
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	1e-33
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	2e-33
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	3e-33
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	1e-31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-30
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-30
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	8e-30
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-29
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-29
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-29
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-29
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-28
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-28
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-26
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-18
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	5e-18
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-15
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-12
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-10
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	5e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	9e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	5e-05
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-04

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414

 Score =  178 bits (453), Expect = 2e-50
 Identities = 91/386 (23%), Positives = 148/386 (38%), Gaps = 37/386 (9%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +A  PL G++  + D+ D     T  G   +          + VV  L   GAT IGKT 
Sbjct: 49  QASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPR--SDAPVVMMLKRAGATIIGKTT 106

Query: 113 VDEFAYSINGTNKHYDTPT-NPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVP 171
              FA           T T NP      PGG+SSG+A AV A ++  +LG  T G V  P
Sbjct: 107 TTAFASR------DP-TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRP 159

Query: 172 SAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLPFAAQ 227
           +A+CG    +PS+  +  +G+   S +LDTVG F    + L      +            
Sbjct: 160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPA 219

Query: 228 RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH 287
           ++PR  ++  +    ++  A++ +Q  IK+ E+  G  V   + L E             
Sbjct: 220 KAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERA-GASVQAID-LPEAVHEAWR------ 271

Query: 288 KTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRN 347
                   +  +IQ +E               + P + A +   + ++    +  + I  
Sbjct: 272 --------IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGR 323

Query: 348 EMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVP 407
             R  +  + +   +L+T +     P         +   NR ++L+      G   V VP
Sbjct: 324 RGRRELGEVFEGVDVLLTYSAPGTAPAKAL-ASTGDPRYNRLWTLM------GNPCVNVP 376

Query: 408 LGYYDKCPTSVSFIARHGGDRFLLDT 433
           +      P  V  IAR G D   L T
Sbjct: 377 VLKVGGLPIGVQVIARFGNDAHALAT 402

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434

 Score =  158 bits (401), Expect = 6e-43
 Identities = 61/164 (37%), Positives = 79/164 (48%), Gaps = 19/164 (11%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR--------TSTVVSTLVEGG 104
           +   PL GL   V DLF ++G  T            A ++         +  V  L E G
Sbjct: 60  QVRGPLHGLPLTVKDLFPVKGMPT-----------RAGTKAPLPPLPEEARAVRRLREAG 108

Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDT 164
           A    KT + E A  I G N       N   PS+  GGSS G+AVAVA  +   SLG DT
Sbjct: 109 ALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDT 168

Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
            G +R+P+ F G++GF+PSYG VS  G +P+S S D  G   R 
Sbjct: 169 GGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRS 212

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521

 Score =  146 bits (371), Expect = 3e-38
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
            LTG   A+ D   + G                 SRT         +TVV+ L+  GAT 
Sbjct: 87  VLTGRRVAIKDNVTVAGVPM-----------MNGSRTVEGFTPSRDATVVTRLLAAGATV 135

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
            GK V ++  +S +          NP    +  GGSS G+A  VA   VDF++G D  G 
Sbjct: 136 AGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGS 195

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +R+P+AFCG++G +P++G V + G  PI  ++D +G   R 
Sbjct: 196 IRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRT 236

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score =  142 bits (360), Expect = 8e-37
 Identities = 59/169 (34%), Positives = 82/169 (48%), Gaps = 24/169 (14%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAAS--------RTSTVVSTLVEGG 104
           +   PL G+   + D  +     T           SA S          + +V  L + G
Sbjct: 73  RLRGPLHGIPLLLKDNINAAPMAT-----------SAGSLALQGFRPDDAYLVRRLRDAG 121

Query: 105 ATCIGKTVVDEFA-----YSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFS 159
           A  +GKT + E+A      SI+G +       NP   S  P GSSSG+AVAVAA+L   +
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181

Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +G +T G +  P+A  G++G +P+ G VS  GIIPIS S DT G  AR 
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARS 230

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 363 LVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIA 422
           LV PTT    P             +      S A+V+G   +TVP+G  D  P  + F+ 
Sbjct: 413 LVAPTTGVAWPIRSEG-------DDFPGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMG 465

Query: 423 RHGGDRFLLDTVQNMYASLQEQA 445
               +  L++      A   EQ 
Sbjct: 466 TAWSEPKLIE-----MAYAYEQR 483

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493

 Score =  140 bits (354), Expect = 4e-36
 Identities = 73/421 (17%), Positives = 132/421 (31%), Gaps = 65/421 (15%)

Query: 57  PLTGLSFAVSDLFD-IEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDE 115
           P  G+ + + DL    +G +          +   A   +  V  +   G   +GKT   E
Sbjct: 63  PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE 122

Query: 116 FAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFC 175
               +    + +    NP    +  GGSS G+  AVAA L   + G D  G VR+P++ C
Sbjct: 123 MGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVC 182

Query: 176 GILGFRPSYGAVSHMGIIPISTSLD----------TV-----------GWFARDPKILRH 214
           G++G +P+ G +S   ++  S ++           +V           G    D      
Sbjct: 183 GVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPT 242

Query: 215 VGHVLLQLPFAAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHEN 271
                 Q       +P  + +     +         D       +               
Sbjct: 243 ASRPYAQ---GISENPGSLRVGVLTHNPVG--DFALDPECAAAARGAAAAL-------AA 290

Query: 272 LG---EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPD-ISAE 327
           LG        +    + F K           I             E +   L  D +   
Sbjct: 291 LGHDVNDAYPEALGDRSFLKD-------YSTICDVAIAREIERNGELIGRPLTEDDVEWT 343

Query: 328 IGEMLE----ISETVIENCKSIRNEMRSAISSLLKDDG-ILVTPTTAYPPPKLG------ 376
             EM++    ++      C          +    +    +L+ PT     P++G      
Sbjct: 344 SWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAK 403

Query: 377 --GKEMLSEDYQNRAFSLL---SIASVSGCCQVTVPLGY-YDKCPTSVSFIARHGGDRFL 430
               E     + + +  +L      +VSG   +++P+G   D  P  V  +A +G +  L
Sbjct: 404 GTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLL 463

Query: 431 L 431
           L
Sbjct: 464 L 464

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485

 Score =  133 bits (338), Expect = 6e-34
 Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 20/165 (12%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEG 103
           +    L G+   + D     G  T           + AS+          STV+  L + 
Sbjct: 66  QMDGKLFGIPMGIKDNIITNGLET-----------TCASKMLEGFVPIYESTVMEKLHKE 114

Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
            A  IGK  +DEFA   +    ++    NP     +PGGSS G+A AVAA LV  SLG D
Sbjct: 115 NAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSD 174

Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           T G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+
Sbjct: 175 TGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRN 219

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471

 Score =  132 bits (335), Expect = 1e-33
 Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEGGATC 107
           PL GL  AV D     G  T           +A SR          +T V+ L   GA  
Sbjct: 57  PLAGLVVAVKDNIATRGLRT-----------TAGSRLLENFVPPYEATAVARLKALGALV 105

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           +GKT +DEF    +  +  +    NP  P ++PGGSS G+A A+AADL   +LG DT G 
Sbjct: 106 LGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGS 165

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           VR P+AFCG+ G +P+YG VS  G+I  ++SLD +G  AR 
Sbjct: 166 VRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARS 206

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478

 Score =  132 bits (334), Expect = 2e-33
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEGGATC 107
           PL G+  AV D   +EG  T           + AS+          +TV+  L + GA  
Sbjct: 63  PLFGIPIAVKDNILVEGEKT-----------TCASKILENFVAPYDATVIERLKKAGALI 111

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           +GKT +DEFA   +     +    NP    ++PGGSS G+A +VA      SLG DT G 
Sbjct: 112 VGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGS 171

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +R P++FCG++G +P+YG VS  G++  ++SLD +G F R 
Sbjct: 172 IRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRR 212

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476

 Score =  131 bits (333), Expect = 3e-33
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 20/165 (12%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEG 103
           +      G+  A+ D     G  T           + ASR          +TVV  + E 
Sbjct: 54  EKKGKFWGIPVAIKDNILTLGMRT-----------TCASRILENYESVFDATVVKKMKEA 102

Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
           G   +GK  +DEFA   +     +    NP    ++PGGSS G+A AV+A +V  +LG D
Sbjct: 103 GFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSD 162

Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           T G VR P++ CG++G++P+YG VS  G++  ++SLD +G   + 
Sbjct: 163 TGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKT 207

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573

 Score =  128 bits (323), Expect = 1e-31
 Identities = 73/395 (18%), Positives = 121/395 (30%), Gaps = 43/395 (10%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
                L G+  ++ + F  +G+ +  G          +     VV  L   GA     T 
Sbjct: 123 PRQGLLYGVPVSLKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTN 180

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           V +  +S + +N  +    NP   S+ PGGSS G    + +      LG D  G +R PS
Sbjct: 181 VPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPS 240

Query: 173 AFCGILGFRPSYGAVSHMGIIP----ISTSLDTVGWFARDPKILRHVGHVLLQ------- 221
           AFCGI G +P+   +S  G+       +    ++G  ARD + L      LL        
Sbjct: 241 AFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLD 300

Query: 222 -----LPF--AAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQV----- 266
                LPF     RS R + +     D + +      R +    +  E   G  +     
Sbjct: 301 PTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAA-GHTLIPFLP 359

Query: 267 LKHENLGEYFDSKVPSLKGFHKTNGELKN--VMRLIQRYEFKNNHNEWIESVKPALDPDI 324
                  E   +      G        K   V   +           W + +   L   +
Sbjct: 360 NNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPL 419

Query: 325 SAEIGEMLEISE--TVIENCKSI--RNEMRSAISSLLKDDGI--LVTPTTAYPPPKLGGK 378
              +   L      +  +  K        R ++ +  K   +  L+TP            
Sbjct: 420 FPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPG 479

Query: 379 EMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDK 413
                     A S   + +        VP+     
Sbjct: 480 RAT------GAVSYTMLYNCLDFPAGVVPVTTVTA 508

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  113 bits (286), Expect = 4e-30
 Identities = 29/69 (42%), Positives = 37/69 (53%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC
Sbjct: 2   MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61

Query: 522 TKAINLDKK 530
            KAI  D  
Sbjct: 62  NKAIEKDPN 70

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  113 bits (284), Expect = 7e-30
 Identities = 27/70 (38%), Positives = 38/70 (54%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
              A + K KGN+ ++   + +A+  YTEAIK N  +A  YSNRAA Y +   F  A  D
Sbjct: 13  PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72

Query: 521 CTKAINLDKK 530
           C + I L+  
Sbjct: 73  CEECIQLEPT 82

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  113 bits (284), Expect = 8e-30
 Identities = 27/72 (37%), Positives = 42/72 (58%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
            +  SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA 
Sbjct: 4   MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 63

Query: 519 ADCTKAINLDKK 530
           ADC +A+ LD +
Sbjct: 64  ADCRRALELDGQ 75

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  111 bits (281), Expect = 2e-29
 Identities = 27/70 (38%), Positives = 37/70 (52%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
            + A+  K KGN+ +K   +  A+  Y EA+K +  NA  YSNRAA   +   F +A  D
Sbjct: 10  PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69

Query: 521 CTKAINLDKK 530
           C   I LD K
Sbjct: 70  CDTCIRLDSK 79

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  113 bits (284), Expect = 2e-29
 Identities = 32/71 (45%), Positives = 44/71 (61%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
             + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  
Sbjct: 9   ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 68

Query: 520 DCTKAINLDKK 530
           D T+AI LDKK
Sbjct: 69  DATRAIELDKK 79

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  110 bits (277), Expect = 3e-29
 Identities = 19/69 (27%), Positives = 31/69 (44%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
              E  KE+GN  +K   + +A+  Y + I     N   YSN+A A ++ G + QA   C
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 522 TKAINLDKK 530
            + +     
Sbjct: 62  QQGLRYTST 70

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  110 bits (278), Expect = 4e-29
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +     KEKGN+A        A+  Y+EAIKL+ +N   YSNR+AAY + G + +A  D 
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 522 TKAINLDKK 530
            K ++L   
Sbjct: 62  CKTVDLKPD 70

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  108 bits (273), Expect = 2e-28
 Identities = 27/71 (38%), Positives = 40/71 (56%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + A   KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 522 TKAINLDKKVR 532
            KAI + ++ R
Sbjct: 62  EKAIEVGRENR 72

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  108 bits (271), Expect = 4e-28
 Identities = 29/71 (40%), Positives = 42/71 (59%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
               AE  K +GN+  K + +  A+ FY +AI+LN  NA Y+ NRAAAY + G++  A  
Sbjct: 8   DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67

Query: 520 DCTKAINLDKK 530
           DC +AI +D  
Sbjct: 68  DCERAICIDPA 78

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  109 bits (274), Expect = 4e-28
 Identities = 27/75 (36%), Positives = 38/75 (50%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515
            +      ++  K +GN A   K++ KAI  YT+A+ +   N  Y SNRAAAY  SG   
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62

Query: 516 QAEADCTKAINLDKK 530
           +A  D   A  +D K
Sbjct: 63  KAAEDAELATVVDPK 77

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  106 bits (266), Expect = 2e-27
 Identities = 27/73 (36%), Positives = 42/73 (57%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
              +A   K+ GN AYK K + KA   Y +AI+L+ +N T+Y+N+AA Y E   F +   
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 520 DCTKAINLDKKVR 532
            C KA+ + ++ R
Sbjct: 64  FCEKAVEVGRETR 76

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  108 bits (271), Expect = 1e-26
 Identities = 27/69 (39%), Positives = 41/69 (59%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
            SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 522 TKAINLDKK 530
            +A+ LD +
Sbjct: 62  RRALELDGQ 70

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  103 bits (258), Expect = 4e-26
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNA 498
                    +           S E  +++GN+ +K   +  A++ YT+A+ L+    + A
Sbjct: 6   SGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQA 65

Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             + NRAA +L+   + +AE + +KAI  D  
Sbjct: 66  VLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 87.4 bits (217), Expect = 1e-18
 Identities = 19/67 (28%), Positives = 26/67 (38%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
              E   E G +     Q   A+S +  A+  + +N   Y  RA  +L  G    A  D 
Sbjct: 24  ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83

Query: 522 TKAINLD 528
           TK I L 
Sbjct: 84  TKVIQLK 90

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 511
             + Q +      E   +  +D ++  A S Y   +K   + A Y           + + 
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308

Query: 512 GSFLQAEADCTKAINLD 528
              ++A   C++ + ++
Sbjct: 309 EKPVEAIRVCSEVLQME 325

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 12/69 (17%), Positives = 29/69 (42%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           +    +  + +   A+    +  AI+F  + +++   +A     RA  +++ G   +A +
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198

Query: 520 DCTKAINLD 528
           D   A  L 
Sbjct: 199 DLKAASKLK 207

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             +   KD++ ++AI   +E +++  +N     +RA AYL    + +A  D   A   ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 530 K 530
            
Sbjct: 361 N 361

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 15/67 (22%), Positives = 29/67 (43%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             AE+ + +     K+ +  KAIS    A KL  +N   +   +  Y + G    + ++ 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 522 TKAINLD 528
            + + LD
Sbjct: 235 RECLKLD 241

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 9/87 (10%), Positives = 28/87 (32%), Gaps = 12/87 (13%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNR------------AAAYLESGSFLQA 517
                Y+      ++S   E +KL+ ++   +++             A   +  G +  A
Sbjct: 217 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276

Query: 518 EADCTKAINLDKKVRLICAEAQQERCL 544
            +     +  +  +      +++  C 
Sbjct: 277 TSKYESVMKTEPSIAEYTVRSKERICH 303

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 32/70 (45%), Positives = 44/70 (62%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
            + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62

Query: 521 CTKAINLDKK 530
            T+AI LDKK
Sbjct: 63  ATRAIELDKK 72

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 80.5 bits (199), Expect = 5e-18
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 19/95 (20%)

Query: 455 TNTFNQK-QSAEIAKEKGNQAYKDKQWLKAISFYTEAI------------------KLNG 495
           +N  + K +S E  ++KGN+ +  K + +AI  Y +A+                  +L+ 
Sbjct: 1   SNAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR 60

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
            N   Y+N +  YL  G   +AE   ++ +  ++ 
Sbjct: 61  KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET 95

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 473 QAY-KDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLD-- 528
           Q Y       +A    +E +K    N    +  RA A + +    +AE D    +     
Sbjct: 71  QCYLNIGDLHEAEETSSEVLKREETNEKALFR-RAKARIAAWKLDEAEEDLKLLLRNHPA 129

Query: 529 -----KKVRLICAEAQQER 542
                 +   I  E + E+
Sbjct: 130 AASVVAREMKIVTERRAEK 148

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 82.2 bits (204), Expect = 9e-18
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC K
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198

Query: 524 AINLD 528
           AI  D
Sbjct: 199 AIEKD 203

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 74.1 bits (183), Expect = 5e-15
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A+  K +GN+ YK +Q+ +AI  Y +A +L+  + TY +NRAAA  E G +  A +    
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63

Query: 524 AINLD 528
           A+   
Sbjct: 64  AVEQG 68

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 11/61 (18%), Positives = 23/61 (37%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +    Y+  ++  AIS   +A++        Y   + ++   G+      D  K I   +
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 530 K 530
           K
Sbjct: 104 K 104

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           +   A      + +AI+   +AI+ + N    Y  +A A +    +  A      A   D
Sbjct: 179 RAA-ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237

Query: 529 KKVRLICAEAQQERCLDITRRQLK 552
            +           R  +I +   K
Sbjct: 238 AE----VNNGSSAR--EIDQLYYK 255

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 8/59 (13%), Positives = 14/59 (23%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             +   K +   K +        +N   A         Y     +  A    T+ I   
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 3/62 (4%), Positives = 16/62 (25%), Gaps = 3/62 (4%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
               ++         +    + I+    + T +   A    +  +  +          ++
Sbjct: 78  ISK-SFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVN 135

Query: 529 KK 530
            +
Sbjct: 136 PE 137

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 82.7 bits (205), Expect = 3e-17
 Identities = 19/65 (29%), Positives = 26/65 (40%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
            E   E G +     Q   A+S +  A+  + +N   Y  RA  +L  G    A  D TK
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 524 AINLD 528
            I L 
Sbjct: 63  VIALK 67

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 511
             + Q +      E   +  +D ++  A S Y   +K   + A Y           + + 
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285

Query: 512 GSFLQAEADCTKAINLD 528
              ++A   C++ + ++
Sbjct: 286 EKPVEAIRICSEVLQME 302

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.4 bits (155), Expect = 6e-11
 Identities = 12/69 (17%), Positives = 29/69 (42%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           +    +  + +   A+    +  AI+F  + +++   +A     RA  +++ G   +A +
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175

Query: 520 DCTKAINLD 528
           D   A  L 
Sbjct: 176 DLKAASKLK 184

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             +   KD++ ++AI   +E +++  +N     +RA AYL    + +A  D   A   ++
Sbjct: 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337

Query: 530 KVRLICAEAQQERCLDITRRQLK 552
                  + ++   L+  +R LK
Sbjct: 338 N----DQQIREG--LEKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 15/67 (22%), Positives = 29/67 (43%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             AE+ + +     K+ +  KAIS    A KL  +N   +   +  Y + G    + ++ 
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211

Query: 522 TKAINLD 528
            + + LD
Sbjct: 212 RECLKLD 218

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 474 AYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532
            +    +   A+   T+ I L  +       R    L+ G   +AE D  K +  +    
Sbjct: 46  VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-- 103

Query: 533 LICAEAQQER 542
               E ++  
Sbjct: 104 --EQEEKEAE 111

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 14/90 (15%)

Query: 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNR------------AAAYLESGSFLQAEADCT 522
           Y+      ++S   E +KL+ ++   +++             A   +  G +  A +   
Sbjct: 199 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258

Query: 523 KAINLDKKVRLICAEAQQERCLDITRRQLK 552
             +  +  V      +++  C      + +
Sbjct: 259 SVMKTEPSVAEYTVRSKERIC--HCFSKDE 286

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 15/74 (20%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNR---------------AAAYLESGSF 514
           +G+   K  +  +A   + + +K N +                       A    +   +
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 515 LQAEADCTKAINLD 528
             A     K + + 
Sbjct: 137 TAAITFLDKILEVC 150

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           + + A   K+KGNQ +++K++  AI +Y  A++L   +  +YSN +A Y+  G   +   
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVE 60

Query: 520 DCTKAINLDKK 530
             TKA+ L   
Sbjct: 61  MSTKALELKPD 71

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 14/134 (10%)

Query: 408 LGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKS-------------KLS 454
            G +    T  ++   +  D+ L++ + N+Y    E  D A +S             K +
Sbjct: 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227

Query: 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF 514
            +   +++ A   +  G   +     L A     +AI+L       Y   A    +    
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDS 286

Query: 515 LQAEADCTKAINLD 528
            +      KA+ LD
Sbjct: 287 TEYYNYFDKALKLD 300

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 13/86 (15%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ----- 516
           ++ E+             + KA+  Y  AI+L       Y   A    ++    +     
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429

Query: 517 ----AEADCTKAINLDKKVRLICAEA 538
               A     KA  LD +      +A
Sbjct: 430 NFIEATNLLEKASKLDPR----SEQA 451

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 11/61 (18%), Positives = 23/61 (37%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
               AY++ ++    + ++EA +         +  A    +   F +A      AI L+ 
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 530 K 530
           K
Sbjct: 404 K 404

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +G   +  + + +A   + +A +L+  N   Y   A        F   E   ++A     
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 530 KVRLICAEAQQER 542
           +      E     
Sbjct: 370 E----APEVPNFF 378

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 443 EQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 502
            +AD    + LS       +S + A E   +A +  +  + +    E  KL    A    
Sbjct: 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE--EQLDKNNEDEKLKEKLAISLE 241

Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKV 531
           +           L A  D  KAI L  +V
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRV 270

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 474 AYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
              D+    +  +++ +A+KL+ NN++ Y +R        ++ QA  D  KA  LD
Sbjct: 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAE 537
           + +++A +   +A KL+  +       A   L+     +A     ++ +L + +     E
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM----EE 484

Query: 538 AQQERCL-DITRRQLKI 553
             Q     +  + Q +I
Sbjct: 485 KLQAITFAEAAKVQQRI 501

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK-AINLD 528
                       K +   T+A++L  + +     RA+A    G F  A  D +  ++N D
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104

Query: 529 KK 530
             
Sbjct: 105 FN 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 79.8 bits (197), Expect = 6e-16
 Identities = 21/72 (29%), Positives = 37/72 (51%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
            ++  A   K +GN  +  K + +AI +Y  AI+L+ N   +YSN +A Y+ +G   +  
Sbjct: 20  QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79

Query: 519 ADCTKAINLDKK 530
              TKA+ +   
Sbjct: 80  EFTTKALEIKPD 91

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 10/61 (16%), Positives = 20/61 (32%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                YK  ++ ++ +F+ E            +  A    + G F  A      A  L++
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 530 K 530
            
Sbjct: 410 V 410

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           ++ +A      G   +     L A     E+I L+    +Y    A    +  +  +   
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI-FLALTLADKENSQEFFK 297

Query: 520 DCTKAINLD 528
              KA++L+
Sbjct: 298 FFQKAVDLN 306

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515
               +         +      ++++  AI   T+A +L+  +       A   L+     
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479

Query: 516 QAEADCTKAINLDKKVRLICAEAQQERCL-DITRRQLKI 553
           +A      +  L +       E  Q     +  + Q ++
Sbjct: 480 EAIELFEDSAILART----MDEKLQATTFAEAAKIQKRL 514

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                  DK    +   F+ +A+ LN      Y +R   Y     +  A+ D  KA +L+
Sbjct: 282 LAL-TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 473 QAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531
           Q Y   + +  A   + +A  LN  N   Y   A    + G F ++EA   +        
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT- 376

Query: 532 RLICAEA 538
                E 
Sbjct: 377 ---LPEV 380

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 10/74 (13%), Positives = 17/74 (22%)

Query: 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 517
                                 +   +S  T    L  N A         +    + L A
Sbjct: 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262

Query: 518 EADCTKAINLDKKV 531
           +    ++INL    
Sbjct: 263 QVLLQESINLHPTP 276

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 16/94 (17%), Positives = 23/94 (24%), Gaps = 22/94 (23%)

Query: 462 QSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAA------------- 507
              E+          D+     AI  Y  A +L       +                   
Sbjct: 376 TLPEVPTFFAE-ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434

Query: 508 ---YLESGSFLQAEADCTKAINLDKKVRLICAEA 538
               L+   F  A    TKA  LD +      +A
Sbjct: 435 DPTQLDEEKFNAAIKLLTKACELDPR----SEQA 464

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 12/60 (20%), Positives = 22/60 (36%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                       K I F T+A+++  +++     RA+A    G+F  A  D +       
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 4/53 (7%)

Query: 482 KAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
                  +   L+ +     A    NR   +  + +F +A      AI LD  
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN 57

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 74.4 bits (183), Expect = 1e-15
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 16/85 (18%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRA 505
           QSA   KE+GN+ +K  +  +AI  Y EA+                K      +   N A
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95

Query: 506 AAYLESGSFLQAEADCTKAINLDKK 530
             Y ++  + +A    +K + +DK 
Sbjct: 96  TCYNKNKDYPKAIDHASKVLKIDKN 120

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLIC 535
           K+K + KAI   ++ +K++ NN         A +  G   +A+ +  KA +L+       
Sbjct: 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN----N 155

Query: 536 AEAQQERCLDITRRQLK 552
            + +     ++   +LK
Sbjct: 156 LDIRNS--YELCVNKLK 170

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 15/86 (17%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI---------------KLNGNNATYYSNR 504
           + + + I KE+G   +K+ ++ +A+  Y + +               K        + N 
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202

Query: 505 AAAYLESGSFLQAEADCTKAINLDKK 530
           A  +L+  +F  A   C KA+ LD  
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSN 228

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLIC 535
           K + +  AI    +A++L+ NN    S R  A+L    F  A AD  K + L    +   
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267

Query: 536 AE 537
            +
Sbjct: 268 TQ 269

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 9/66 (13%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 464 AEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
            ++  + G+  + +   +  AI +  + I+    +   +     AY  +  +++A++   
Sbjct: 108 LDMYGQIGS-YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166

Query: 523 KAINLD 528
           K + L 
Sbjct: 167 KVLELK 172

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC- 521
           + ++     +  +K+  + +AI  + +      N+   Y+ RA  Y E   +  A+ D  
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 522 --TKAINLDKK 530
                +N  K 
Sbjct: 62  TYFSKVNATKA 72

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 2/62 (3%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G        Q   AI  Y  A+  +      Y    + +   G+F  A     K I   
Sbjct: 80  YGK-ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138

Query: 529 KK 530
             
Sbjct: 139 TT 140

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAIN 526
            G   Y +K+++KA S + + ++L  N    Y  RA A            A+    K I 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 527 LDKK 530
           +   
Sbjct: 208 VCAP 211

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 3/74 (4%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISF---YTEAIKLNGNNATYYSNRAAAYLESGSFLQ 516
           +  S  I   +    Y+  ++  A      Y   +      +  +       ++ G    
Sbjct: 33  KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92

Query: 517 AEADCTKAINLDKK 530
           A      A++ D  
Sbjct: 93  AIQQYQAAVDRDTT 106

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 8/61 (13%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATY--------YSNRAAAYLESGSFLQAEADCTKAINL 527
            D +   A  +Y + I++                   A  Y  +   ++A+A     + L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 528 D 528
           D
Sbjct: 251 D 251

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 12/92 (13%)

Query: 439 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 498
            +L     +             + + E     G   Y+  +W  A   +     L+  +A
Sbjct: 5   GTLAMLRGL------------SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA 52

Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
            Y+    A     G + QA    +    +D  
Sbjct: 53  RYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
                + +A+  Y+    ++ N   +  + A  +L+ G    AE+    A  L   
Sbjct: 63  QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 16/67 (23%), Positives = 27/67 (40%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
            +  +     +  ++ ++  ++  F T AIK N   A  YSN    Y E G   +A    
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

Query: 522 TKAINLD 528
             A+ L 
Sbjct: 91  RHALRLK 97

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.8 bits (138), Expect = 9e-09
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN   +  Q  +AI  Y  A++L  +    Y N AAA + +G    A      A+  +
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 7/60 (11%), Positives = 21/60 (35%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           E  ++ Y+   +  A     +  +   +N       ++ + +     ++    T AI  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN   K+ + + +A++ Y  A+ L+ N+A  + N A  Y E G    A     +AI L 
Sbjct: 209 LGN-VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.9 bits (133), Expect = 3e-08
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             N A K+K    +A   Y  A++L   +A   +N A    E G+  +A     KA+ + 
Sbjct: 277 LAN-ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.9 bits (133), Expect = 3e-08
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                Y ++     AI  Y  AI+L  +    Y N A A  E GS  +AE     A+ L 
Sbjct: 243 LAC-VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 11/59 (18%), Positives = 18/59 (30%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                        A+  Y  A++ N +     S+        G   +A+A   KAI   
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI + 
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN   K    L +A + Y +AI+   N A  +SN    +   G    A     KA+ LD
Sbjct: 141 LGN-LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G       +   AI  + +A+ L+ N    Y N      E+  F +A A   +A++L 
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 17/72 (23%), Positives = 29/72 (40%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N + S+++A E      K++ + KA  FY E ++   NN       A   +  G    A 
Sbjct: 49  NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108

Query: 519 ADCTKAINLDKK 530
               K + L+  
Sbjct: 109 RMYEKILQLEAD 120

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 16/83 (19%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRA 505
           QS +   +K + A +  Q  +A+S++ + I LN +                     +  A
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 506 AAYLESGSFLQAEADCTKAINLD 528
            AY ++ ++ +A     + +   
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQKA 84

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 6/53 (11%), Positives = 14/53 (26%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             +Q  K +    + +               + L +  + +A     K I   
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLD 528
                    Q   A+  Y + ++L  +N          Y  +     +      K ++  
Sbjct: 94  CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153

Query: 529 KK 530
            K
Sbjct: 154 TK 155

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             +  +   + KA   +T+AI+ N  +A  Y N A          +A A   KA+ LD
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD 87

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             N      +  +A++FY +A++L+ + AT Y      Y+    + +A+    KA+   
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G       +Q   A+ +   A++LN N+              G   +A +        D
Sbjct: 131 LGT-VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.5 bits (127), Expect = 7e-08
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN  Y  K+   +A   + +A++    N   +       ++      A     +A+ L+
Sbjct: 97  AGN-VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G     +     +A+S +    + +  +A  + N    Y    +  +A     KAI++ 
Sbjct: 165 FGM-CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL----QAEADCTKAINLD 528
            +   +  +  L    +   S      +  GS      +A    TKAI  +
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN 53

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 13/68 (19%), Positives = 25/68 (36%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             + I    G      K   +A   +T +I  + + A  Y  R   Y ++  +  A  D 
Sbjct: 35  PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL 94

Query: 522 TKAINLDK 529
            +A+   +
Sbjct: 95  KEALIQLR 102

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +G  A   K W  A+  ++    +   ++    N    Y    +  +AE   T++IN DK
Sbjct: 12  EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 530 KVRLICAEA 538
                 A A
Sbjct: 69  H----LAVA 73

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 16/75 (21%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYS---------------NRAAAYLESGS 513
           +G   Y+ +++  AI    EA+  L GN    Y                N A  Y +   
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 514 FLQAEADCTKAINLD 528
           + +AE     A ++ 
Sbjct: 137 WKKAEEQLALATSMK 151

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 14/94 (14%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 436 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
            +  +LQ++  +A   + L++      + A++  E+G           A + +++A+ + 
Sbjct: 14  PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73

Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            +    ++       ++G+F  A       + LD
Sbjct: 74  PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 10/59 (16%), Positives = 18/59 (30%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G    +   +  A   +   ++L+      + NR  A    G    A+ D       D
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 1/87 (1%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
           ++QA    K     +   Q     +    GN   +     +  +  T+   L  + +   
Sbjct: 160 EKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETN 218

Query: 502 SNRAAAYLESGSFLQAEADCTKAINLD 528
                 YL  G    A A    A+  +
Sbjct: 219 FYLGKYYLSLGDLDSATALFKLAVANN 245

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 7/54 (12%), Positives = 14/54 (25%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
            G           A + +  A+  N +N   +          G      A+  +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 1/59 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           +G   Y   +   A        + + N+         A  +     QA+    +     
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKS 174

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 58.1 bits (140), Expect = 4e-09
 Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 6/124 (4%)

Query: 406 VPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAE 465
           VP G +    T    + R        +  +++   LQ   D     +   +++ +  S E
Sbjct: 15  VPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFR---DSYFETHSVE 71

Query: 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ-AEADCTKA 524
            A  K       ++  K +    E +      A     +  A   +  +   AE   +KA
Sbjct: 72  DAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA 129

Query: 525 INLD 528
           + L+
Sbjct: 130 VKLE 133

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 460 QKQSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 517
            +  A+    KG  A         +A    ++A+KL       ++     Y + G    A
Sbjct: 98  AQVEAQALMLKGK-ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA 156

Query: 518 EADCTKAINLDK 529
               + A+   K
Sbjct: 157 HTCFSGALTHCK 168

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 472 NQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           N     K   +A+S Y +A K++    +N   + NRA  +    S+ +A    ++A  LD
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 52.8 bits (128), Expect = 9e-09
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +    +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 49  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 48.9 bits (118), Expect = 2e-07
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY     + +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 15  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 11/70 (15%), Positives = 18/70 (25%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N     E   E+G    K     +A   +    +        + +      E+     A 
Sbjct: 16  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI 75

Query: 519 ADCTKAINLD 528
                A  LD
Sbjct: 76  IALNHARMLD 85

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G    ++++   AI     A  L+  +   ++  A ++    +   A A     +   
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 119

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 8/59 (13%), Positives = 22/59 (37%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G        +  A +    A++L  ++A  ++   A         +A     +A++++
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           +        ++ +  +    A+++N N+A  +++    Y  S ++  A A+  +A+ L 
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G     +  +  +A+  Y  A+ +N        N A +Y     +  A     +AI + 
Sbjct: 212 LGA-TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +    +AI +Y +A++L+  +A  + N   AY + G + +A     KA+ LD
Sbjct: 41  LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +    +AI +Y +A++L+  +A  + N   AY + G + +A     KA+ LD
Sbjct: 75  LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +  + +AI +Y +A++L+  +A  + N   AY + G + +A     KA+ LD
Sbjct: 7   LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G+   K K +  AI    + + L+ N+A  ++  A  YL       A     +++ +  
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 530 K 530
            
Sbjct: 582 N 582

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 16/95 (16%), Positives = 29/95 (30%)

Query: 434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493
           V N   +  E+ D+  K   ST +                    +  L+    Y  +I  
Sbjct: 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300

Query: 494 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
              ++     +A        F+   A  TK + +D
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 9/72 (12%), Positives = 31/72 (43%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
             ++S+++   K +  +   +++  ++  T+ ++++  N   Y    A+  ESG   +  
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359

Query: 519 ADCTKAINLDKK 530
                 ++   +
Sbjct: 360 LISNDLVDRHPE 371

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G       +  +A  +++++  ++      +   A ++   G   QA +  T A  L +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 530 KVRLICAEA 538
                    
Sbjct: 439 G----THLP 443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 10/61 (16%), Positives = 16/61 (26%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G Q  +    L A  +   +  L   +    +              A      A+ L K
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506

Query: 530 K 530
           K
Sbjct: 507 K 507

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 7/61 (11%), Positives = 19/61 (31%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                ++  +  K      + +  +   A  +      YL      +A    +K+  +D 
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 530 K 530
           +
Sbjct: 405 Q 405

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 7/67 (10%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQAEADC 521
           E G  A+       AI+ +  A+ L           A  ++N   AY +   +  A    
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539

Query: 522 TKAINLD 528
            + + L 
Sbjct: 540 NQGLLLS 546

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             + ++    +  +AIS YT A +L       Y      +++ G+ L A      +  L 
Sbjct: 413 FAH-SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY-----------------YS 502
           +  +A+  K  GN  +K+++  +A+  Y  AI   G++  +                 + 
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234

Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKK 530
           N AA  ++   + +A   C   +  ++K
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEK 262

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLI 534
           K K++ +AI      +     N    +  R  A  E G    A  D  KA       + I
Sbjct: 242 KLKRYDEAIGHCNIVLTEEEKNPKALF-RRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300

Query: 535 CAE 537
             E
Sbjct: 301 RRE 303

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           +   +         A+    E ++         Y     AY + G + +A  +   AI L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 528 D 528
           +
Sbjct: 65  N 65

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 436 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
           +     Q Q  ++   K    +T N  +    A E+G +  K+      I F   AI  +
Sbjct: 36  SENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95

Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             +A  +        E+ +   A     + + L 
Sbjct: 96  PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 10/59 (16%), Positives = 18/59 (30%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G    +++    AI      ++L  NN       A +Y  +     A       I  +
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN 163

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 8/59 (13%), Positives = 23/59 (38%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G   +   ++ +AI  +  A+ +   + + ++   A         +A    T+A+ + 
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G     +  +  +A+  YT A+++         N   + +  G++ +A ++   A++L 
Sbjct: 253 LGA-TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311

Query: 529 KK 530
           +K
Sbjct: 312 RK 313

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 459 NQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFL 515
             K+ +     + +++  D          Y EA   NG+  +    +     +  SG F 
Sbjct: 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230

Query: 516 QAEADCTKAINLD 528
           +A      A+ + 
Sbjct: 231 RAIDAFNAALTVR 243

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 4/90 (4%)

Query: 443 EQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----A 498
           E+A  A +S        Q +  E+A+       ++ Q    +S   +    +  N     
Sbjct: 6   ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65

Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                     L+ G           AI  D
Sbjct: 66  PGAFEEGLKRLKEGDLPVTILFMEAAILQD 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 67/493 (13%), Positives = 134/493 (27%), Gaps = 150/493 (30%)

Query: 139 MPG-GSSSGAAVAVAADLVD--FSLGID--TVGGVRVPSAFCGIL-----GFRPSYGA-V 187
           + G G +  A     +  V       I    +     P     +L        P++ +  
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 188 SHMGIIPISTS---------------------LDTVGWFARDPKILRHVGH---VLLQLP 223
            H   I +                        L  V     + K          +LL   
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-Q---NAKAWNAFNLSCKILL--- 270

Query: 224 FAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG---EYFDSKV 280
                + R   + D       + A     + +              E      +Y D + 
Sbjct: 271 -----TTRFKQVTDF------LSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRP 315

Query: 281 PSL-KGFHKTN-------GE-LKNVMRLIQRYE--FKNNHNEWIESVKPALDPDISAEIG 329
             L +    TN        E +++ +     ++    +     IES    L+P    ++ 
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 330 EMLE-------ISETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 380
           + L        I   ++       I++++   ++ L K                     +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-------------------YSL 416

Query: 381 LSEDYQNRAFSLLSIASVSGCCQV--------------TVPLGY--YDKCPTSV-----S 419
           + +  +    S+ SI  +    ++               +P  +   D  P  +     S
Sbjct: 417 VEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 420 FIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 479
            I  H      L  +++      E+  +     L      QK   +      + +  +  
Sbjct: 476 HIGHH------LKNIEH-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT- 523

Query: 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKA-------INLDKKV 531
            L+ + FY   I    +N   Y     A L+   FL + E +   +       I L  + 
Sbjct: 524 -LQQLKFYKPYIC---DNDPKYERLVNAILD---FLPKIEENLICSKYTDLLRIALMAED 576

Query: 532 RLICAEA--QQER 542
             I  EA  Q +R
Sbjct: 577 EAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-05
 Identities = 49/378 (12%), Positives = 112/378 (29%), Gaps = 113/378 (29%)

Query: 227 QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF 286
           Q  P+ I+  ++   ++    D V       T +LF   + K E + + F      ++  
Sbjct: 39  QDMPKSILSKEEIDHIIMSK-DAVSG-----TLRLFWTLLSKQEEMVQKF------VEEV 86

Query: 287 HKTNGELKNVMRLIQRYEFKNNHNEWI------ESVKPALDPDISAEIGEMLEISETVIE 340
            + N            Y       +++      E  +P++   +  E  + L     V  
Sbjct: 87  LRIN------------Y-------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 341 NCKSIRNEM----RSAISSLLKDDGILVTPTTAYPPPKLG----GKEMLSEDYQNRAFSL 392
                R +     R A+  L     +L+           G    GK  +       A  +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLI-----D-----GVLGSGKTWV-------ALDV 170

Query: 393 LSIASVSGCCQVTVPLG-YYDKCPTSVSFIARHGGDRFLLDTVQNMYA----SLQEQADI 447
                V    Q  +    ++      ++          +L+ +Q +      +   ++D 
Sbjct: 171 CLSYKV----QCKMDFKIFW------LNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAY------KDKQWLKAISF---------YTEAI- 491
           ++  KL  ++   +    +  +            ++ +   A +          + +   
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 492 KLNGNNATYYSNRAAAYLE--SGSFLQAEADCTKAINLDKKVRLICAEAQQERC------ 543
            L+    T+ S      L+  S +    E    K++ L K +     +  +E        
Sbjct: 280 FLSAATTTHIS------LDHHSMTLTPDE---VKSL-LLKYLDCRPQDLPREVLTTNPRR 329

Query: 544 LDITRRQLKIFHMHWS-W 560
           L I    ++     W  W
Sbjct: 330 LSIIAESIRDGLATWDNW 347

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 68/466 (14%), Positives = 131/466 (28%), Gaps = 144/466 (30%)

Query: 7   NLWVLL----GLG---LAGILLMTKKLKKNIKQDFGAF-------------IEKLQLL-- 44
              VL+    G G   +A  + ++ K++   K DF  F             +E LQ L  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 45  ---PPPQPLP---PKAPHPLTGLSFAVSDLFDIEGY---------VTGFGHPEWARTHSA 89
              P               +  +   +  L   + Y         V              
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-------QNAKAWN 260

Query: 90  A----------SRTSTVVSTLVEGGATCIGKTVVDE------------FAYSINGTNKHY 127
           A          +R   V   L     T I  ++                   ++   +  
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLD--CRPQ 316

Query: 128 DTP-----TNPAAPSQMPGGSSSGAAVAVAADLVDF--SLGIDTVGGVRVPSAFCGILG- 179
           D P     TNP   S +        ++       D    +  D +    +  +   +L  
Sbjct: 317 DLPREVLTTNPRRLSII------AESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEP 368

Query: 180 --FRPSYGAVSHMGIIP----ISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQI 233
             +R  +     + + P    I T L ++ WF      +  V + L +     ++     
Sbjct: 369 AEYRKMFDR---LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 234 IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLK--------- 284
           I     +  LK+  +    +          R ++ H N+ + FDS               
Sbjct: 426 ISIPSIYLELKVKLENEYAL---------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 285 -GFH---KTNGELKNVMRLI-QRYEF-----KNNHNEW--IESVKPAL------------ 320
            G H     + E   + R++   + F     +++   W    S+   L            
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 321 -DPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL--KDDGIL 363
            DP     +  +L+    + EN   I ++    +   L  +D+ I 
Sbjct: 537 NDPKYERLVNAILDFLPKIEENL--ICSKYTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 38/275 (13%), Positives = 85/275 (30%), Gaps = 69/275 (25%)

Query: 327 EIGEM-------LEI-SETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 376
           E GE        L +  +  ++N  CK +++  +S +S    D  I+++        +L 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLF 68

Query: 377 G--------------KEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY----DKCPTSV 418
                          +E+L  +Y+   F +  I +     Q ++    Y    D+     
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDN 123

Query: 419 SFIARHGGDRF-LLDTVQNMYASLQEQADIAT-------KSKLSTNTFNQKQSAEIAKEK 470
              A++   R      ++     L+   ++         K+ ++ +      S ++  + 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKM 180

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--- 527
             + +    WL   +  +    L       Y               + +D +  I L   
Sbjct: 181 DFKIF----WLNLKNCNSPETVLEMLQKLLYQID--------PNWTSRSDHSSNIKLRIH 228

Query: 528 ---DKKVRLICAEAQQERCLDI-----TRRQLKIF 554
               +  RL+      E CL +       +    F
Sbjct: 229 SIQAELRRLL-KSKPYENCLLVLLNVQNAKAWNAF 262

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 9/87 (10%), Positives = 26/87 (29%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
            +               N  +      E+G +  ++     A+  +  A++ +  +   +
Sbjct: 42  DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAW 101

Query: 502 SNRAAAYLESGSFLQAEADCTKAINLD 528
                   E+   L A +   + + L 
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELK 128

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 12/61 (19%), Positives = 21/61 (34%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G    +++Q L AIS     ++L  +N T     A ++       QA       +    
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

Query: 530 K 530
            
Sbjct: 164 A 164

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 11/59 (18%), Positives = 23/59 (38%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G       ++ KA+  +T A+ +  N+   ++   A         +A A   +A+ L 
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTK 523
            +K        D  +L+    +  A++L+  +            +  SG + +A    T 
Sbjct: 183 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242

Query: 524 AINLD 528
           A+++ 
Sbjct: 243 ALSVR 247

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 10/49 (20%), Positives = 23/49 (46%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           +A++ Y  A++L         N   + +  G+  +A     +A+N+ +K
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 48.9 bits (118), Expect = 1e-07
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +    +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 15  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 7/59 (11%), Positives = 23/59 (38%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           KG    K  ++ +A+    +    +  +     +   AY+++G+  +      +++   
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G  A  +     +AI  +  A+ L  N    +   A +Y + G   +A     KA  LD
Sbjct: 116 LGV-ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G  AY       +       ++    +N    +     Y++   +  A     K    +
Sbjct: 48  LGI-AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G   Y   +++  A+    +  + N  N         A    G F +A      A+ L 
Sbjct: 82  LGL-TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G+   K K++ +A+ ++ +A+ L   NA+ YS     +   G+F  A      A+ L 
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 6/91 (6%), Positives = 28/91 (30%), Gaps = 4/91 (4%)

Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
           S  + ++      +       +++ ++      + Y +  +       +  ++ +  +A+
Sbjct: 2   SYNKPSETVIPESVDGL----QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS 57

Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
                    +E     +      K ++L   
Sbjct: 58  CLPVHIGTLVELNKANELFYLSHKLVDLYPS 88

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 9/61 (14%), Positives = 20/61 (32%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G +         A  F+++A+ +   +            ++G +  AE     A+   K
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

Query: 530 K 530
            
Sbjct: 225 A 225

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 7/71 (9%)

Query: 470 KGNQAYKDKQWL--KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
            G   Y         A  + ++A  L       +     ++       QA A    A  L
Sbjct: 96  VGC-YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154

Query: 528 DKKVRLICAEA 538
            K     C   
Sbjct: 155 MKG----CHLP 161

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNG---------NNATYYSNRAAAYLESGSFLQAEA 519
           E G  A+++ +W  A  ++ +A++                  +N      +   + +A  
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

Query: 520 DCTKAINLD 528
              +A+ L 
Sbjct: 258 YHRQALVLI 266

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 8/47 (17%), Positives = 19/47 (40%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           +A++ Y  A +L              Y  + +   AE   ++A+++ 
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 13/66 (19%), Positives = 28/66 (42%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q+ E    +G   Y    + ++I  + +AI+L+   + Y+  +  A      + +A    
Sbjct: 4   QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63

Query: 522 TKAINL 527
              IN+
Sbjct: 64  NYVINV 69

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.4 bits (106), Expect = 6e-06
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KG   Y  +++ +A+  Y   I +  +  N   ++ +A A                   L
Sbjct: 46  KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105

Query: 528 D 528
           +
Sbjct: 106 E 106

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 6/67 (8%), Positives = 15/67 (22%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q        G      +   + +    +A  L        ++         +  +     
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 266 CQAHGLT 272

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 4/67 (5%), Positives = 14/67 (20%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +               +   + +    +A  L        ++         +  +     
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 130 CQAHGLT 136

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 5/67 (7%), Positives = 13/67 (19%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q               +   + +    +A  L        ++         +        
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 164 CQAHGLT 170

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 6/67 (8%), Positives = 16/67 (23%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q        G      +   + +    +A  L        ++ +       +  +     
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 300 CQAHGLT 306

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 4/59 (6%), Positives = 13/59 (22%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                   +   + +    +A  L        ++         +  +      +A  L 
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 408

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 6/67 (8%), Positives = 15/67 (22%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q        G      +   + +    +A  L        ++         +  +     
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 368 CQAHGLT 374

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 5/67 (7%), Positives = 15/67 (22%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +        G      +   + +    +A  L        ++         +  +     
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 436 CQAHGLT 442

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 4/67 (5%), Positives = 13/67 (19%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +               +     +    +A  L        ++         +  +     
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 198 CQAHGLT 204

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 4/59 (6%), Positives = 13/59 (22%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                   +   + +    +A  L        ++         +  +      +A  L 
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 5/67 (7%), Positives = 15/67 (22%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +        G      +   + +    +A  L        ++         +  +     
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 232 CQAHGLT 238

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 4/59 (6%), Positives = 13/59 (22%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                   +   + +    +A  L        ++         S +   +    A+   
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAAL 476

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 7/95 (7%)

Query: 435 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKL 493
           + + A L    ++           +  Q  +IAK  G  A +    W  A+      + L
Sbjct: 14  RALEALLTVAGELRGPP----LQLDTGQLLKIAKRGGVTAVEAVHAWRNAL--TGAPLNL 67

Query: 494 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                   ++         +  +      +A  L 
Sbjct: 68  TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 102

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 11/68 (16%), Positives = 29/68 (42%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
            Q + I  +   +  + + + +A +   +A+K +  N   +  RA  Y       +A+  
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 521 CTKAINLD 528
             +A+++ 
Sbjct: 65  FRQALSIK 72

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 9/58 (15%), Positives = 20/58 (34%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KG  + K  Q+  A ++   ++         +   A   + +G    A+    K  + 
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 11/59 (18%), Positives = 21/59 (35%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G Q Y   ++  A++ +  A+K N  +       A   L+ G    A  +    +   
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           +G   Y    +  KA +   +A+ L  +     S  A  YL  G   +A A   KA+   
Sbjct: 124 RGL-VYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 13/65 (20%), Positives = 28/65 (43%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
             + ++  ++        +A+S   +A ++N   A  +  R   Y   G   +AEA   +
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 524 AINLD 528
           A+ L+
Sbjct: 144 ALALE 148

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                Y     L +A++ Y +A++    +       A+A L  G   +A        +  
Sbjct: 157 LAE-LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 8/71 (11%), Positives = 15/71 (21%), Gaps = 13/71 (18%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-----------SGSFLQA 517
                         A+      +         Y   + AY+             G   QA
Sbjct: 45  LAR-TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103

Query: 518 EADCTKAINLD 528
            +    A  ++
Sbjct: 104 LSVLKDAERVN 114

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
                +    +    A++   +A + N N     S  A+ +  +  + +AE    K  + 
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

Query: 528 DKKVRLICAEAQQ 540
           +          Q 
Sbjct: 364 ELT----PVAKQL 372

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 7/58 (12%), Positives = 16/58 (27%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                + ++  +      EA++          + A  Y       +A     KA+   
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 462 QSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE- 518
           +S E+  E+G    K    Q  +A   + +A++    N  + S  A A     ++  ++ 
Sbjct: 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193

Query: 519 --ADCTKAINLD 528
                 +AI L+
Sbjct: 194 AIDPLRQAIRLN 205

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 10/83 (12%), Positives = 25/83 (30%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
            ++ +       +  +  KAI    +A++   NNA  +      Y      +    +   
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306

Query: 524 AINLDKKVRLICAEAQQERCLDI 546
                    +  A A  ++  + 
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEA 329

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 7/46 (15%), Positives = 11/46 (23%)

Query: 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                   +    +N          Y E   F  A      A++ D
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD 49

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 10/87 (11%), Positives = 24/87 (27%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           G    + +Q+  A+     A+  +   +  +          G    A       +   + 
Sbjct: 26  GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

Query: 531 VRLICAEAQQERCLDITRRQLKIFHMH 557
                   + +  L    R+  + H H
Sbjct: 86  RGDQQVVKELQVFLRRLAREDALEHHH 112

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 18/138 (13%)

Query: 442 QEQADIATKSKLSTNTFNQKQS-AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 500
            ++ D+A K        ++  +  ++A    + A   ++   A   + E           
Sbjct: 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202

Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKK-----VRLICAEAQQERCLDITRR---QLK 552
            + +AA ++  G +  AE    +A++ D       + L+       +  ++T R   QLK
Sbjct: 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262

Query: 553 IFHMHWSWSPPIKEHPFL 570
             H         + HPF+
Sbjct: 263 DAH---------RSHPFI 271

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 7/60 (11%), Positives = 21/60 (35%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             +  K     +A++ + E ++ + +    Y +    Y        A     + I + ++
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 10/93 (10%), Positives = 33/93 (35%)

Query: 436 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 495
           +  + L  +               + ++ +   + G    +     +A     +A++++ 
Sbjct: 9   HHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           ++A  ++  A  +        A+ +  KA+  D
Sbjct: 69  SSADAHAALAVVFQTEMEPKLADEEYRKALASD 101

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 8/58 (13%), Positives = 22/58 (37%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           G  + + K+  +A  ++ ++++LN N  +     A    +   ++ A           
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 474 AYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525
            ++   +   A   Y +A+  +  NA   +N      E   + +A     +A 
Sbjct: 80  VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 11/70 (15%), Positives = 18/70 (25%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N     E   E+G    K     +A   +    +        + +      E+     A 
Sbjct: 12  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71

Query: 519 ADCTKAINLD 528
                A  LD
Sbjct: 72  IALNHARMLD 81

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 9/69 (13%), Positives = 24/69 (34%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +  E  +  G    ++++   AI     A  L+  +   ++  A ++    +   A A  
Sbjct: 49  EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108

Query: 522 TKAINLDKK 530
              +    +
Sbjct: 109 RAWLLSQPQ 117

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 7/89 (7%), Positives = 20/89 (22%), Gaps = 1/89 (1%)

Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
           +++           +       Q   IA          +   + +    +A  L      
Sbjct: 169 AMEAVHASRNALTGAPLNLTPAQVVAIA-SNNGGKQALETVQRLLPVLCQAHGLTPAQVV 227

Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLD 528
             ++         +  +      +A  L 
Sbjct: 228 AIASHDGGKQALETMQRLLPVLCQAHGLP 256

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 5/67 (7%), Positives = 15/67 (22%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                    G      +   + +    +A  L  +     ++         +  +     
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 352 CQAHGLT 358

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 4/67 (5%), Positives = 14/67 (20%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                           +   + +    +A  L  +     ++         +  +     
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 386 CQAHGLT 392

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 4/60 (6%), Positives = 14/60 (23%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                    +   + +    +A  L  +     ++         +  +      +A  L 
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 4e-05
 Identities = 4/67 (5%), Positives = 14/67 (20%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                           +   + +    +A  L  +     ++         +  +     
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 284 CQAHGLT 290

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 6e-05
 Identities = 5/67 (7%), Positives = 15/67 (22%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                    G      +   + +    +A  L  +     ++         +  +     
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588

Query: 522 TKAINLD 528
            +A  L 
Sbjct: 589 CQAHGLT 595

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 4/59 (6%), Positives = 14/59 (23%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                   +   + +    +A  L  +     ++         +  +      +A  L 
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLT 527

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 8/87 (9%), Positives = 19/87 (21%), Gaps = 1/87 (1%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
            E            +     Q   IA          +   + +    +A  L  +     
Sbjct: 612 LETVQRLLPVLCQAHGLTPAQVVAIA-SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 670

Query: 502 SNRAAAYLESGSFLQAEADCTKAINLD 528
           ++         +  +      +A  L 
Sbjct: 671 ASNGGGKQALETVQRLLPVLCQAHGLT 697

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 11/68 (16%), Positives = 21/68 (30%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
            + +            +Q+ +A   Y  A  L  N+ T   +     L   + L+A+   
Sbjct: 68  YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127

Query: 522 TKAINLDK 529
              I    
Sbjct: 128 ELVIQHSN 135

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI + 
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            +   +  +  +A+  Y EAI+++   A  YSN      E      A    T+AI ++
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 8e-05
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             A+     GN   + +    A+  YT AI++N   A  +SN A+ + +SG+  +A A  
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 522 TKAINLD 528
             A+ L 
Sbjct: 135 RTALKLK 141

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 12/59 (20%), Positives = 21/59 (35%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           G       Q+  AI  Y+    ++     +  + A   L+ G   +AE+    A  L  
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 7/50 (14%), Positives = 15/50 (30%)

Query: 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
              + +     A++    +   +   A A L  G     E    + + L 
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH 53

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 3/114 (2%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
              E     G   +  ++  +A     +A      +         A  ++G    A A  
Sbjct: 55  GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114

Query: 522 TKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE---HPFLLI 572
           T+A  L  +   I A+    R      R L +       +         PF  +
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 4/67 (5%), Positives = 12/67 (17%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q         +                  + L+  +    +             +A    
Sbjct: 21  QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80

Query: 522 TKAINLD 528
            +A +  
Sbjct: 81  QQASDAA 87

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 16/83 (19%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRAAA 507
           +E  K  GN  +K + W  AI  YT+ +                KL     +   N  A 
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282

Query: 508 YLESGSFLQAEADCTKAINLDKK 530
            L+   +  A   C +A+ +D  
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPS 305

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLIC 535
           K +++ KA+    +A+ L+  N      R  A L    F  A+ D  K + ++ + +   
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388

Query: 536 AE 537
            +
Sbjct: 389 LQ 390

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 15/90 (16%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY--------------- 500
           +T  + + A I KEKG   +K  ++++A+  Y + +                        
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319

Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           + N A  YL+   + +A   C KA+ LD  
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSA 349

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 8/68 (11%), Positives = 24/68 (35%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
           +   +  ++  +Q    +     +    + I+ N  N+  ++     YL    +  +   
Sbjct: 7   RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66

Query: 521 CTKAINLD 528
             +A+ L 
Sbjct: 67  YRQALQLR 74

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 12/121 (9%), Positives = 36/121 (29%), Gaps = 13/121 (10%)

Query: 421 IARHGGDRFLLDTVQNMYASLQEQADI--ATKS-----KLSTNTFNQKQSAEIAKEKGNQ 473
           +    G         +    L E  D+  A         +  N    +Q+AE+  +    
Sbjct: 105 MYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL 164

Query: 474 AYKDKQWLKAISFYTEAIKLN------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
             + +++ +A +   +   +                +    L    ++ A+    ++ ++
Sbjct: 165 LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224

Query: 528 D 528
            
Sbjct: 225 P 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	573
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	100.0
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	100.0
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	100.0
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	100.0
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	100.0
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	100.0
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	100.0
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	100.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.71
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.61
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.59
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.49
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.48
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.48
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.48
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.46
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.43
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.43
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.32
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.31
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.31
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.27
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.27
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.25
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.25
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.25
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.24
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.24
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.23
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.23
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.21
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.21
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.21
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.2
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.2
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.19
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.19
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.17
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.17
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.16
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.16
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.16
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.13
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.13
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.11
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.1
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.1
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.04
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.03
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.03
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.03
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.03
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.03
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.02
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.02
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.01
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.01
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.01
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.0
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.99
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.96
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.96
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.95
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.94
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.94
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.93
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.92
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.92
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.92
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.91
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.91
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.91
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.9
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.9
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.89
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.86
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.85
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.85
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.85
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.84
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.84
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.83
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.83
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.83
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.82
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.81
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.81
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.81
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.8
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.8
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.8
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.78
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.77
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.77
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.77
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.77
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.76
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.76
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.76
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.75
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.75
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.74
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.72
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.71
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.71
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.7
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.68
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.66
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.62
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.61
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.61
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.59
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.58
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.57
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.57
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.56
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.55
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.55
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.54
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.53
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.53
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.52
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.52
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.51
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.5
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.49
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.49
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.48
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.48
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.47
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.44
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.43
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.43
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.42
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.41
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.41
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.41
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.4
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.39
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.39
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.39
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.38
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.36
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.35
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.35
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.34
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.31
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.31
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.3
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.3
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.28
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.25
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.22
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.22
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.21
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.2
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.19
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.17
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.16
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.15
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.1
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.04
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.02
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.01
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.98
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.95
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.92
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.91
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.91
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.88
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.84
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.83
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.83
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.83
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.71
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.69
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.63
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.59
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.53
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.43
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.41
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.4
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.39
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.35
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.27
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.23
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.17
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.16
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.14
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.07
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.07
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.01
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.82
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.79
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.75
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.71
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.47
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.14
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.56
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.37
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.3
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.27
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.21
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.35
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.32
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.65
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	92.02
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.62
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.48
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.46
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	88.25
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	88.06
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	87.67
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	87.58
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	84.78
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	83.65
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	83.45
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	83.39
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	83.3
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	82.24
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	81.34

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-90  Score=720.00  Aligned_cols=404  Identities=25%  Similarity=0.334  Sum_probs=341.4

Q ss_pred             HhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCC
Q 008244           12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEG   73 (573)
Q Consensus        12 ~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~g   73 (573)
                      ++.+|+++++.+|     +    ++|  +.|| +|||++..+++|+++|+       +++..||||||||+|||+|+++|
T Consensus         2 ~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G   80 (434)
T 2dc0_A            2 DLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKG   80 (434)
T ss_dssp             CHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTT
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCC
Confidence            5677777766554     2    343  7799 99999998877766542       35668999999999999999999


Q ss_pred             cccCCCchhhhhcCCCC-CCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHh
Q 008244           74 YVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVA  152 (573)
Q Consensus        74 ~~tt~Gs~~~~~~~~~~-~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVa  152 (573)
                      ++||+||+.+ .   ++ .+|+++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||
T Consensus        81 ~~tt~Gs~~~-~---~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVA  156 (434)
T 2dc0_A           81 MPTRAGTKAP-L---PPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVA  156 (434)
T ss_dssp             BCCCTTCSSC-C---CCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHH
T ss_pred             cccCCCCccc-C---CCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Confidence            9999999988 2   55 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccC--CCC
Q 008244          153 ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ--RSP  230 (573)
Q Consensus       153 ag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--~~~  230 (573)
                      +|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+. ..+.  .++
T Consensus       157 ag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~~~~~  235 (434)
T 2dc0_A          157 LGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLEGVQN  235 (434)
T ss_dssp             HTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCCCCCS
T ss_pred             cCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998876 3332  345


Q ss_pred             ceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhh
Q 008244          231 RQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNN  308 (573)
Q Consensus       231 ~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~  308 (573)
                      .||++..+.+  ....++++.++++++++.|.  |++|++ ++        .| +.+.       ...+..+...|.+..
T Consensus       236 lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~p-~~~~-------~~~~~~~~~~e~~~~  296 (434)
T 2dc0_A          236 PVFGVPLDFL--EGRLGVEVRKAFTRLLEDLPALRAEVRE-VS--------LP-LEGV-------YEVYTRLVRYEAARI  296 (434)
T ss_dssp             CEEEECHHHH--TTCSCHHHHHHHHHHHHHTTTTTCEEEE-CC--------CC-CTTH-------HHHHHHHHHHHHHHH
T ss_pred             CEEEEECccc--cCCCCHHHHHHHHHHHHHHHHCCCEEEE-eC--------CC-cHHH-------HHHHHHHHHHHHHHH
Confidence            6777765433  23358899999999999986  666532 22        22 2211       223333455566667


Q ss_pred             hHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCC---h-HH
Q 008244          309 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML---S-ED  384 (573)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~---~-~~  384 (573)
                      +..++....+.+++.++.++..+..++..+|.++++.|..+++++.++|+++|+||+||+|.++|+++.....   . ..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~  376 (434)
T 2dc0_A          297 HEKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKG  376 (434)
T ss_dssp             SHHHHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEE
T ss_pred             HHHHHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhh
Confidence            7777777777899999999999999999999999999999999999999999999999999999999865210   0 11


Q ss_pred             HHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244          385 YQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (573)
Q Consensus       385 ~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~  440 (573)
                      ....+..||.++|++|+|+||||+|+.+|||+|||++|++++|..||+++..+|++
T Consensus       377 ~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~  432 (434)
T 2dc0_A          377 HREAFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR  432 (434)
T ss_dssp             HHHHHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence            11233568999999999999999998889999999999999999999999999864

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A

Probab=100.00  E-value=1.7e-89  Score=722.60  Aligned_cols=412  Identities=22%  Similarity=0.277  Sum_probs=333.8

Q ss_pred             hHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCC--------CCCCCCCCCCCceeeeecc
Q 008244            8 LWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQP--------LPPKAPHPLTGLSFAVSDL   68 (573)
Q Consensus         8 ~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a--------~~~~~~gpL~Gvp~~vKD~   68 (573)
                      +..+|+++|+++++.+|     +    ++|  +.||.+|||++...++|+++|        +.++. ||||||||+|||+
T Consensus         3 l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD~   81 (485)
T 3ip4_A            3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKDN   81 (485)
T ss_dssp             GGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEETT
T ss_pred             cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEcC
Confidence            55678999999977665     2    244  779999999999887766554        33555 9999999999999


Q ss_pred             cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (573)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa  148 (573)
                      |+++|++||+||+.+.+  +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||
T Consensus        82 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsA  159 (485)
T 3ip4_A           82 IITNGLETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSA  159 (485)
T ss_dssp             BCBTTBCCCTTSGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHH
T ss_pred             cccCCCccCCCChhhcC--CCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHH
Confidence            99999999999999876  4889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008244          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--  226 (573)
Q Consensus       149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--  226 (573)
                      |+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+  
T Consensus       160 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~  239 (485)
T 3ip4_A          160 AAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDST  239 (485)
T ss_dssp             HHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTT
T ss_pred             HHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987654221  


Q ss_pred             ---------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhh
Q 008244          227 ---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKT  289 (573)
Q Consensus       227 ---------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~  289 (573)
                                     ..++.||++..+.+.  ...++++.++++++++.|.  |++|++ +++        |.+...   
T Consensus       240 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~---  305 (485)
T 3ip4_A          240 SAPVDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVVEE-VSL--------PNTKFG---  305 (485)
T ss_dssp             SCCCCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH---
T ss_pred             ccccCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHH---
Confidence                           124567777655432  2358899999999999986  777643 222        222211   


Q ss_pred             hhhHHHHHHHHHHHHHHhhh------------------HH-HHHhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHH
Q 008244          290 NGELKNVMRLIQRYEFKNNH------------------NE-WIESVKPALDPDISAEIGEMLE-----ISETVIENCKSI  345 (573)
Q Consensus       290 ~~~l~~~~~~~~~~e~~~~~------------------~~-~~~~~~~~~~~~~~~~~~~g~~-----~s~~~~~~a~~~  345 (573)
                          ...+..+...|+...+                  .+ +.....+.+++.++.++..+..     ....+|.++++.
T Consensus       306 ----~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~  381 (485)
T 3ip4_A          306 ----IPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKV  381 (485)
T ss_dssp             ----HHHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHH
Confidence                1122222222322211                  11 1122234578888888876642     223458899999


Q ss_pred             HHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccC
Q 008244          346 RNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHG  425 (573)
Q Consensus       346 r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~  425 (573)
                      |..+++++.++|+++|+||+||+|.+||+++....+..... ....||.+||++|+|+||||+|+++|||+|||++|+++
T Consensus       382 r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlqlvg~~~  460 (485)
T 3ip4_A          382 RTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPF  460 (485)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCCEeEEEEcCCC
Confidence            99999999999999999999999999999987543332221 11238999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHH
Q 008244          426 GDRFLLDTVQNMYASL  441 (573)
Q Consensus       426 ~d~~ll~~a~~le~~l  441 (573)
                      +|..||++++++|+.+
T Consensus       461 ~d~~lL~~A~~lE~~~  476 (485)
T 3ip4_A          461 DEKTLYRVAYQYETQY  476 (485)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999999754

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-88  Score=709.80  Aligned_cols=405  Identities=24%  Similarity=0.350  Sum_probs=331.1

Q ss_pred             hhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCch
Q 008244           13 GLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP   81 (573)
Q Consensus        13 ~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~   81 (573)
                      +++|+++++.+|     +    ++|  +.||.+|||++.. ++++++|++.....|||||||+|||+|+++|++||+||+
T Consensus         3 a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~pL~GvPi~vKD~~~~~G~~tt~Gs~   81 (471)
T 3kfu_E            3 AHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSR   81 (471)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSCTTTTCEEEEETTBCCTTSCCCTTCS
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccCCcCCCeEEEECCcccCCccccccCH
Confidence            567777765554     2    244  7799999999999 888887765444559999999999999999999999999


Q ss_pred             hhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccc
Q 008244           82 EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLG  161 (573)
Q Consensus        82 ~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~G  161 (573)
                      .+.+  +++.+|+++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|
T Consensus        82 ~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~G  159 (471)
T 3kfu_E           82 LLEN--FVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALG  159 (471)
T ss_dssp             TTTT--CCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEE
T ss_pred             hHcC--CCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccc
Confidence            9876  47889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc---------------
Q 008244          162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---------------  226 (573)
Q Consensus       162 tD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---------------  226 (573)
                      ||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+               
T Consensus       160 tDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~  239 (471)
T 3kfu_E          160 SDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALE  239 (471)
T ss_dssp             EESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCCCTTCCSC
T ss_pred             cCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCcchhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999987654221               


Q ss_pred             -CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHH
Q 008244          227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY  303 (573)
Q Consensus       227 -~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~  303 (573)
                       ..++.||++..+.+   ...++++.++++++++.|.  |++|++ ++        .|.+...       ...+..+...
T Consensus       240 ~~~~~lrIgv~~~~~---~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~--------~p~~~~~-------~~~~~~~~~~  300 (471)
T 3kfu_E          240 GPLPPLRLGVVREAL---AGNSPGVERALEEALKVFRELGLSVRE-VS--------WPSLPQA-------LAAYYILAPA  300 (471)
T ss_dssp             CCCSSCEEEEEGGGT---TTCCHHHHHHHHHHHHHHHTTTCEEEE-EC--------CTTGGGH-------HHHHHHHHHH
T ss_pred             cCCCCCEEEEECCcc---CCCCHHHHHHHHHHHHHHHHcCCeeee-ec--------CccHHHH-------HHHHHHHHHH
Confidence             12345677665543   3358899999999999986  776643 22        2322221       1122222223


Q ss_pred             HHHh-----------------hhHHHHHhhCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008244          304 EFKN-----------------NHNEWIESVKPALDPDISAEIGEMLEI-----SETVIENCKSIRNEMRSAISSLLKDDG  361 (573)
Q Consensus       304 e~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~D  361 (573)
                      |+..                 .+.+++......+++.++.++..+..+     +..+|.++++.|..++++|.++|+++|
T Consensus       301 e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D  380 (471)
T 3kfu_E          301 EASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVD  380 (471)
T ss_dssp             HHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             HHHHHHHHhhhhccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3221                 122333333334899999988776433     335899999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244          362 ILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (573)
Q Consensus       362 vLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l  441 (573)
                      +||+||+|.+||+++....+...+...  .||.+||++|+|+||||+|+.+|||+|||++|++++|..||+++.++|+..
T Consensus       381 vll~Pt~~~~a~~~~~~~~~~~~~~~~--~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~  458 (471)
T 3kfu_E          381 LLLLPTTPHPAFPFGARRDPLAMYRED--LYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEAT  458 (471)
T ss_dssp             EEEEESCSSSCCBTTTTCSHHHHHGGG--TTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred             EEEeCCcCCCCCccccccchHHHHHHh--hhhhcchhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            999999999999998753322223222  289999999999999999998899999999999999999999999999653

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*

Probab=100.00  E-value=1.2e-88  Score=712.35  Aligned_cols=413  Identities=24%  Similarity=0.320  Sum_probs=334.7

Q ss_pred             hHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCCCCC-CCCCCCceeeeecccccCCcc
Q 008244            8 LWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKA-PHPLTGLSFAVSDLFDIEGYV   75 (573)
Q Consensus         8 ~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~-~gpL~Gvp~~vKD~~~~~g~~   75 (573)
                      |+.+|+.+|+++++.+|     +    ++|  +.||.+|||++...++|+++|++... .||||||||+|||+|+++|++
T Consensus         2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~gpL~GvPi~vKD~~~~~G~~   81 (478)
T 3h0l_A            2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEK   81 (478)
T ss_dssp             CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCTTSTTTTCEEEEETTBCCTTSB
T ss_pred             CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchhcCCcCCceEEEEcCccCCCCC
Confidence            34567889998876665     2    244  77999999999988777666543322 799999999999999999999


Q ss_pred             cCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcC
Q 008244           76 TGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADL  155 (573)
Q Consensus        76 tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~  155 (573)
                      ||+||+.+.+  +++.+|+++|+||++||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|+
T Consensus        82 tt~Gs~~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~  159 (478)
T 3h0l_A           82 TTCASKILEN--FVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLS  159 (478)
T ss_dssp             CCTTCGGGTT--CBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTS
T ss_pred             cCCcCHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCC
Confidence            9999999876  47899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc---------
Q 008244          156 VDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---------  226 (573)
Q Consensus       156 ~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---------  226 (573)
                      +|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+         
T Consensus       160 ~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~  239 (478)
T 3h0l_A          160 APVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVP  239 (478)
T ss_dssp             SSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCC
T ss_pred             CceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999988654322         


Q ss_pred             --------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHH
Q 008244          227 --------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV  296 (573)
Q Consensus       227 --------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~  296 (573)
                              ..++.||++..+.+.  ...++++.++++++++.|.  |++|++ ++        .|.+...       ...
T Consensus       240 ~~~~~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~--------~p~~~~~-------~~~  301 (478)
T 3h0l_A          240 EWSEEVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEGFEIKE-VS--------LPHVKYS-------IPT  301 (478)
T ss_dssp             CHHHHTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-EC--------CTTGGGH-------HHH
T ss_pred             chhhhhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eC--------CCcHHHH-------HHH
Confidence                    124567777655432  3358899999999999986  777643 22        2222211       112


Q ss_pred             HHHHHHHHHHhhh------------------HH-HHHhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHH
Q 008244          297 MRLIQRYEFKNNH------------------NE-WIESVKPALDPDISAEIGEMLE-----ISETVIENCKSIRNEMRSA  352 (573)
Q Consensus       297 ~~~~~~~e~~~~~------------------~~-~~~~~~~~~~~~~~~~~~~g~~-----~s~~~~~~a~~~r~~~~~~  352 (573)
                      +..+...|+...+                  .+ +.....+.+++.++.++..+..     ....+|.++++.|..++++
T Consensus       302 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~  381 (478)
T 3h0l_A          302 YYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITND  381 (478)
T ss_dssp             HHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHH
Confidence            2222233332221                  11 1122234578888888877642     2234688999999999999


Q ss_pred             HHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHH
Q 008244          353 ISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD  432 (573)
Q Consensus       353 ~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~  432 (573)
                      |.++|+++|+||+||+|.+||+++....+..... ....||.+||++|+|+||||+|+.+|||+|||++|++++|..||+
T Consensus       382 ~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~  460 (478)
T 3h0l_A          382 FLKAFEEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQ  460 (478)
T ss_dssp             HHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEEECTTCHHHHHH
T ss_pred             HHHHHhcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHH
Confidence            9999999999999999999999987543332221 122489999999999999999998999999999999999999999


Q ss_pred             HHHHHHHHH
Q 008244          433 TVQNMYASL  441 (573)
Q Consensus       433 ~a~~le~~l  441 (573)
                      ++.++|+.+
T Consensus       461 ~A~~lE~~~  469 (478)
T 3h0l_A          461 ISYLWEQKF  469 (478)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhc
Confidence            999999754

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A

Probab=100.00  E-value=2.6e-88  Score=715.88  Aligned_cols=417  Identities=18%  Similarity=0.231  Sum_probs=341.2

Q ss_pred             hhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeeccc-ccCCc
Q 008244            7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLF-DIEGY   74 (573)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~-~~~g~   74 (573)
                      ++.. |+.+|+++++.++     +    ++|  +.||.+|||++...++|+++|++ . .||||||||+|||+| +++|+
T Consensus         5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-~gpL~GvPi~vKD~~~~v~G~   81 (493)
T 3a2q_A            5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-SGPFAGVPYLLKDLTVVSQGD   81 (493)
T ss_dssp             CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-CSTTTTCEEEEESSSSCCTTS
T ss_pred             hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-CCCcCCcEEEEecCCcCcCCC
Confidence            3555 8999999977665     2    244  77999999999988877766654 3 799999999999999 99999


Q ss_pred             ccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhc
Q 008244           75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD  154 (573)
Q Consensus        75 ~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag  154 (573)
                      +||+||+.+....+++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|
T Consensus        82 ~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG  161 (493)
T 3a2q_A           82 INTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAA  161 (493)
T ss_dssp             BCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTT
T ss_pred             cccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcC
Confidence            99999999982124889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCCcccccccccCcccccCCCCccccCCC--C-CCCCCCCcccccccCHHHHHHHHHHhcCCCccc-----
Q 008244          155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGI--I-PISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----  226 (573)
Q Consensus       155 ~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~--~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-----  226 (573)
                      ++|+|+|||||||||+||+||||||||||+||||+.|+  + |+++++|++|||+|+++|+..+++++.+.+..+     
T Consensus       162 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~  241 (493)
T 3a2q_A          162 LSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAP  241 (493)
T ss_dssp             SCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCCCC
T ss_pred             CCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCccccc
Confidence            99999999999999999999999999999999999998  5 788899999999999999999999988653211     


Q ss_pred             ------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhh
Q 008244          227 ------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE  292 (573)
Q Consensus       227 ------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~  292 (573)
                                  ..++.||++..+.+......++++.++++++++.|.  |++|++ +++        |.+..     ..
T Consensus       242 ~p~~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~-----~~  307 (493)
T 3a2q_A          242 TASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVND-AYP--------EALGD-----RS  307 (493)
T ss_dssp             CCSSCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEE-CCC--------GGGGC-----CT
T ss_pred             CCCcchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CccCH-----HH
Confidence                        123456776655431012358899999999999986  777643 221        11110     00


Q ss_pred             HHHHHHHHHHHHHHh---hhHHHHH--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhc-CCCCEEEEc
Q 008244          293 LKNVMRLIQRYEFKN---NHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL-KDDGILVTP  366 (573)
Q Consensus       293 l~~~~~~~~~~e~~~---~~~~~~~--~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~-~~~DvLl~P  366 (573)
                      +...+..+...|.+.   .+..++.  .....+++.++.++..+..++..+|.++++.|..+++++.++| +++|+||+|
T Consensus       308 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~P  387 (493)
T 3a2q_A          308 FLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILP  387 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcC
Confidence            112223333344443   3334442  2345789999999999999999999999999999999999999 999999999


Q ss_pred             CCCCCCCCCCCCCCC------------hHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHH
Q 008244          367 TTAYPPPKLGGKEML------------SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDT  433 (573)
Q Consensus       367 t~~~~ap~~~~~~~~------------~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~  433 (573)
                      |+|.+||+++.....            ...+ ..+..||.+||++|+|+||||+|++ +|||+|||++|++++|..||++
T Consensus       388 t~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~  466 (493)
T 3a2q_A          388 TVTRQTPEIGELMLAKGTDLEGRQSAFISGS-LQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQV  466 (493)
T ss_dssp             SCSSCCCBTTTTCCCTTCCCCSSCGGGSHHH-HHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHH
T ss_pred             CCCCCCCCCcccccccccccccccchhhhhh-hhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHHHH
Confidence            999999999865321            1112 2345689999999999999999986 9999999999999999999999


Q ss_pred             HHHHHHHH
Q 008244          434 VQNMYASL  441 (573)
Q Consensus       434 a~~le~~l  441 (573)
                      +..+|+.+
T Consensus       467 A~~lE~~~  474 (493)
T 3a2q_A          467 AAQLEGAL  474 (493)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhc
Confidence            99999754

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A

Probab=100.00  E-value=2.9e-87  Score=690.25  Aligned_cols=393  Identities=22%  Similarity=0.269  Sum_probs=333.6

Q ss_pred             HhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCc
Q 008244           12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGH   80 (573)
Q Consensus        12 ~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs   80 (573)
                      |+.+|+++++.+|     +    ++|  +.||.+|||++..++++ +     ...||||||||+|||+|+++|++||+||
T Consensus         3 ~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----~~~gpL~GvPi~vKD~~~v~G~~tt~Gs   76 (414)
T 1o9p_A            3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----QASGPLRGIAVGIKDIIDTANMPTEMGS   76 (414)
T ss_dssp             CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----CSSSTTTTCEEEEETTBCCSSSCCCTTS
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----ccCCCcCCCEEEEEcccccCCcccCcCC
Confidence            5777888866555     2    243  77999999999988776 2     4579999999999999999999999999


Q ss_pred             hhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCcccc
Q 008244           81 PEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSL  160 (573)
Q Consensus        81 ~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~  160 (573)
                      +.|.+.  ++.+|+++|+|||+||||++||||||||++    .|+  |+|+||||++|+||||||||||+||+|++|+|+
T Consensus        77 ~~~~~~--~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~al  148 (414)
T 1o9p_A           77 EIYRGW--QPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLAL  148 (414)
T ss_dssp             GGGTTC--CCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEE
T ss_pred             HhhccC--CCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEE
Confidence            999864  788999999999999999999999999998    444  999999999999999999999999999999999


Q ss_pred             ccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcc---cCCCCceEEEcc
Q 008244          161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFA---AQRSPRQIIIAD  237 (573)
Q Consensus       161 GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~---~~~~~~rl~i~~  237 (573)
                      |||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..   ...++.||++..
T Consensus       149 GtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~lrig~~~  228 (414)
T 1o9p_A          149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVR  228 (414)
T ss_dssp             EEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECC
T ss_pred             eeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccccccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999998875421   123456777765


Q ss_pred             cchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHh
Q 008244          238 DCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES  315 (573)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~  315 (573)
                      +.+.  ...++++.++++++++.|.  |++|++ .+        .|...+.      +...+..+..+|.+..+..++..
T Consensus       229 ~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~~------~~~~~~~~~~~e~~~~~~~~~~~  291 (414)
T 1o9p_A          229 QEFA--GAVEPAAEQGLQAAIKAAERAGASVQA-ID--------LPEAVHE------AWRIHPIIQDFEAHRALAWEFSE  291 (414)
T ss_dssp             CGGG--CCCCHHHHHHHHHHHHHHHHTTCEEEE-CC--------CCHHHHH------HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             cccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            5432  3358899999999999886  666532 11        2211110      22233445556777778888877


Q ss_pred             hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhcc
Q 008244          316 VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI  395 (573)
Q Consensus       316 ~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~  395 (573)
                      ..+.+++.++.++..+..++..+|.++++.|..+++++.++|+++|+||+||+|.++|+++.....       ...||.+
T Consensus       292 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~-------~~~~t~~  364 (414)
T 1o9p_A          292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRL  364 (414)
T ss_dssp             SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CGGGTHH
T ss_pred             ChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCCc-------ccchhhh
Confidence            778899999999999999999999999999999999999999999999999999999998643211       1258999


Q ss_pred             ccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244          396 ASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (573)
Q Consensus       396 ~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l~  442 (573)
                      ||++|+|+||||+|++.|||+|||++|++++|..||+++..+|+++.
T Consensus       365 ~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~  411 (414)
T 1o9p_A          365 WTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA  411 (414)
T ss_dssp             HHHHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred             hHhcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence            99999999999999877999999999999999999999999998764

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*

Probab=100.00  E-value=5.2e-87  Score=702.93  Aligned_cols=407  Identities=21%  Similarity=0.285  Sum_probs=325.0

Q ss_pred             hhHHHHhhhhh--hHHHHHHH----Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCC
Q 008244            7 NLWVLLGLGLA--GILLMTKK----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGF   78 (573)
Q Consensus         7 ~~~~~~~~~l~--~~~~~~~~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~   78 (573)
                      ++..+++.+|-  +.++..|+    ++|  +.||.+|||++..++++++ +    . ||||||||+|||+|+++|++||+
T Consensus         6 ~~~~~s~~~li~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~ald-~----~-gpL~GvPi~vKD~~~v~G~~Tt~   79 (476)
T 2gi3_A            6 DFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVE-K----K-GKFWGIPVAIKDNILTLGMRTTC   79 (476)
T ss_dssp             CGGGCCHHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCC-C----C-STTTTCEEEEETTBCCSSSCCCT
T ss_pred             ccccCCHHHHHHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhhh-c----c-CCcCCceEEEEcCccCCCCccCc
Confidence            44445666651  11444443    233  7799999999999888772 2    2 99999999999999999999999


Q ss_pred             CchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCcc
Q 008244           79 GHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDF  158 (573)
Q Consensus        79 Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~  158 (573)
                      ||+.+.+  +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+
T Consensus        80 Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~  157 (476)
T 2gi3_A           80 ASRILEN--YESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVA  157 (476)
T ss_dssp             TCGGGTT--CCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSE
T ss_pred             cChhhcC--CCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCce
Confidence            9999976  48899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc------------
Q 008244          159 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA------------  226 (573)
Q Consensus       159 a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~------------  226 (573)
                      |+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+            
T Consensus       158 alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~  237 (476)
T 2gi3_A          158 ALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLS  237 (476)
T ss_dssp             EEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSST
T ss_pred             EeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCcchhh
Confidence            99999999999999999999999999999999999999999999999999999999999987653221            


Q ss_pred             ----CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHH
Q 008244          227 ----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLI  300 (573)
Q Consensus       227 ----~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~  300 (573)
                          ..++.||++..+.+.  ...++++.++++++++.|.  |++|++ +++        |.+...       ...+..+
T Consensus       238 ~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~-------~~~~~~~  299 (476)
T 2gi3_A          238 EIEEGVSGMKFAVPEEIYE--HDIEEGVSERFEEALKLLERLGAKVER-VKI--------PHIKYS-------VATYYVI  299 (476)
T ss_dssp             TTTSCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH-------HHHHHHH
T ss_pred             hhhcCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHH-------HHHHHHH
Confidence                123467777655431  2357899999999999886  777643 222        222111       1111122


Q ss_pred             HHHHHHhhh-----------------HHHHHh-hCCCCCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhc
Q 008244          301 QRYEFKNNH-----------------NEWIES-VKPALDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLL  357 (573)
Q Consensus       301 ~~~e~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~  357 (573)
                      ...|....+                 .+++.. ..+.+++.++.++..+..++.     .+|.++++.|..++++++++|
T Consensus       300 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~  379 (476)
T 2gi3_A          300 APAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVL  379 (476)
T ss_dssp             HHHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222221                 112221 235678888888887765443     378899999999999999999


Q ss_pred             CCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHH
Q 008244          358 KDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNM  437 (573)
Q Consensus       358 ~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~l  437 (573)
                      +++|+||+||+|.+||+++........+.  ...||.++|++|+|+||||+|+++|||+|||++|++++|..||+++..+
T Consensus       380 ~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~l  457 (476)
T 2gi3_A          380 SQYDAILTPTSPVTAFKIGEIKDPLTYYL--MDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAI  457 (476)
T ss_dssp             HHSSEEEEESCSSCCCBTTTCCCHHHHHT--TTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred             hcCCEEEeCCCCCCCCcccccccchhhhh--ccceeccccccCCceEEEecccCCCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            99999999999999999986211222222  1358999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 008244          438 YASL  441 (573)
Q Consensus       438 e~~l  441 (573)
                      |++.
T Consensus       458 E~~~  461 (476)
T 2gi3_A          458 EKNS  461 (476)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            9764

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*

Probab=100.00  E-value=1.4e-86  Score=703.62  Aligned_cols=406  Identities=24%  Similarity=0.287  Sum_probs=327.7

Q ss_pred             cchhHHHHhhhhhhHHHHHH-----H----Hhh--hhc---CcccceeeccccCCCCCCC-------CCCCCCCCCCcee
Q 008244            5 SANLWVLLGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSF   63 (573)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~---~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~   63 (573)
                      .-++..+++.+|+++++.++     +    ++|  +.|   |.+|||++...+ |+++|+       +++..||||||||
T Consensus         5 ~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi   83 (503)
T 1m22_A            5 PFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPL   83 (503)
T ss_dssp             CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEE
T ss_pred             CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCcee
Confidence            34566678999999977665     2    243  668   999999999876 666542       3566799999999


Q ss_pred             eeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhc-----ccCCCCCCCCCCCCCCCCCC
Q 008244           64 AVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAY-----SINGTNKHYDTPTNPAAPSQ  138 (573)
Q Consensus        64 ~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~-----~~~~~~~~~G~t~NP~~~~~  138 (573)
                      +|||||+++|++||+||+.+.+.  ++ +||++|+|||+||||++||||||||++     +.+|+|++||+|+||||++|
T Consensus        84 ~vKD~~~v~G~~Tt~Gs~~~~~~--~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~  160 (503)
T 1m22_A           84 LLKDNINAAPMATSAGSLALQGF--RP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISH  160 (503)
T ss_dssp             EEETTBCCTTSCCCTTCGGGTTC--CC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTB
T ss_pred             EeecccccCCCCcCCCCHhhcCC--CC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCC
Confidence            99999999999999999999863  78 999999999999999999999999998     78999999999999999999


Q ss_pred             CCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHH
Q 008244          139 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV  218 (573)
Q Consensus       139 ~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~  218 (573)
                      +||||||||||+||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|+..++++
T Consensus       161 ~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~v  240 (503)
T 1m22_A          161 SPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTA  240 (503)
T ss_dssp             CCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCccc---------------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCcc
Q 008244          219 LLQLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEY  275 (573)
Q Consensus       219 ~~~~~~~~---------------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~  275 (573)
                      +.+.+..+                     ..++.||++..+.+.    .++++.++++++++.|.  |++|++ +++   
T Consensus       241 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~~----~~~~v~~a~~~a~~~L~~~G~~v~~-~~~---  312 (503)
T 1m22_A          241 IAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGAVVVP-VEL---  312 (503)
T ss_dssp             HCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTCEEEE-ECC---
T ss_pred             HcCCCCCCccccccccccccchhhhccccCCCCCEEEEECcccc----CCHHHHHHHHHHHHHHHHcCCEEEE-eCC---
Confidence            87643211                     124567777665431    46788899999998886  777743 222   


Q ss_pred             ccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHH---------------------hhCCCCCHHHHHHHHHhhcC
Q 008244          276 FDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIE---------------------SVKPALDPDISAEIGEMLEI  334 (573)
Q Consensus       276 v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~g~~~  334 (573)
                           |.+.++..       ....+..+|+...+..|+.                     .....+++.++.++..+..+
T Consensus       313 -----p~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (503)
T 1m22_A          313 -----PNQGAWAE-------AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGL  380 (503)
T ss_dssp             -----TTTTTTHH-------HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCT
T ss_pred             -----CcHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCCC
Confidence                 21111100       1111112222222222221                     12346788888999888889


Q ss_pred             CHHHHHHHHHHHHHHHHH--HHhhcCC--CCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCcc
Q 008244          335 SETVIENCKSIRNEMRSA--ISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY  410 (573)
Q Consensus       335 s~~~~~~a~~~r~~~~~~--~~~~~~~--~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~  410 (573)
                      +..+|.++++.|..++++  +.++|++  +|+||+||+ .++|+++....   .+   ...||.++|++|+|+||||+|+
T Consensus       381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~---~~---~~~~t~~~nl~G~PaisvP~g~  453 (503)
T 1m22_A          381 ADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGD---DF---PGESYSAAAVAGYPSLTVPMGQ  453 (503)
T ss_dssp             TCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC------CC---TTCCHHHHHHHTCCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccC---cc---cccccccchhhCCCeEEecccc
Confidence            999999999988888876  9999984  999999999 56777653211   11   1458999999999999999999


Q ss_pred             CCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244          411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (573)
Q Consensus       411 ~~glPvGlq~~~~~~~d~~ll~~a~~le~~l  441 (573)
                      ++|||+|||++|++++|..||+++..+|+++
T Consensus       454 ~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~  484 (503)
T 1m22_A          454 IDGLPVGLLFMGTAWSEPKLIEMAYAYEQRT  484 (503)
T ss_dssp             ETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCChHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999765

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A

Probab=100.00  E-value=1.6e-84  Score=687.41  Aligned_cols=376  Identities=23%  Similarity=0.299  Sum_probs=307.1

Q ss_pred             CCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCC
Q 008244           52 PKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT  131 (573)
Q Consensus        52 ~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~  131 (573)
                      +...||||||||+|||||+++|++||+||+.+.+.  ++.+||++|+|||+||||++||||||||+++.+|+|++||+|+
T Consensus        82 g~~~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~~--~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~  159 (521)
T 3a1k_A           82 PTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGF--TPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVR  159 (521)
T ss_dssp             CSSCCTTTTCEEEEETTBCCTTSCBCTTCTTTTTB--CCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCE
T ss_pred             CCCCCCCCCCEEEEEcCcccCCcccCCCChhhcCC--CCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcC
Confidence            45679999999999999999999999999999764  8899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHH
Q 008244          132 NPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKI  211 (573)
Q Consensus       132 NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d  211 (573)
                      ||||++|+||||||||||+||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||||+++|
T Consensus       160 NP~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D  239 (521)
T 3a1k_A          160 NPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHD  239 (521)
T ss_dssp             ETTEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHH
T ss_pred             CCCCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCccc------------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceecc
Q 008244          212 LRHVGHVLLQLPFAA------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHEN  271 (573)
Q Consensus       212 ~~~v~~~~~~~~~~~------------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~  271 (573)
                      +..+++++.+.+..+                  ..++.||++..+.+.. ...++++.++++++++.|.  |++|++ ++
T Consensus       240 ~a~~l~vlag~d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~Ga~v~e-v~  317 (521)
T 3a1k_A          240 AALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGH-AVSQPEVDDAVRAAAHSLTEIGCTVEE-VN  317 (521)
T ss_dssp             HHHHHHHHCSCCSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGGSCC-SSSCHHHHHHHHHHHHGGGGGTCEEEE-EC
T ss_pred             HHHHHHHHhCCCCCCccccccCCCcchhhhhccCccCcEEEEECccccc-cCCCHHHHHHHHHHHHHHHHCCCEEEE-eC
Confidence            999999987654221                  1234567775553321 2247899999999999886  666643 22


Q ss_pred             CCccccccCCChhhhhhhhhhHH--HHHHHH-------------HHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhh----
Q 008244          272 LGEYFDSKVPSLKGFHKTNGELK--NVMRLI-------------QRYEFKNNHNEWIESVKPALDPDISAEIGEML----  332 (573)
Q Consensus       272 lg~~v~~~~p~~~~~~~~~~~l~--~~~~~~-------------~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~----  332 (573)
                              .|.+.........+.  .....+             ...+....+..|...+.+.+++.++.++..|.    
T Consensus       318 --------~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~  389 (521)
T 3a1k_A          318 --------IPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGIT  389 (521)
T ss_dssp             --------CTHHHHHHHHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHT
T ss_pred             --------CCchHhHHHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhc
Confidence                    222211100000000  000000             00122223444555556778999999987763    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHh---hhhhhccccccCCceeeecCc
Q 008244          333 EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNR---AFSLLSIASVSGCCQVTVPLG  409 (573)
Q Consensus       333 ~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~---~~~~t~~~nl~G~PaisvP~g  409 (573)
                      .++..+|.++++.|..+++.|+++|+++|+||+||+|.+||+++....+...+..+   +..||.+||++|+|+||||+|
T Consensus       390 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g  469 (521)
T 3a1k_A          390 TLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAG  469 (521)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecc
Confidence            46778999999999999999999999999999999999999998754333333322   345899999999999999999


Q ss_pred             cCCCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008244          410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (573)
Q Consensus       410 ~~~glPvGlq~~~~~~~d~~ll~~a~~le~  439 (573)
                      +.+|||+||||+|++++|..||+++.++|+
T Consensus       470 ~~~GlPvGlQlvg~~~~d~~LL~~A~~~E~  499 (521)
T 3a1k_A          470 LVNGLPVGMMITGRHFDDATVLRVGRAFEK  499 (521)
T ss_dssp             EETTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999997

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*

Probab=100.00  E-value=6.5e-83  Score=676.54  Aligned_cols=419  Identities=20%  Similarity=0.215  Sum_probs=323.1

Q ss_pred             chhHHHHhhhhhhHHHHHHH---------Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCc
Q 008244            6 ANLWVLLGLGLAGILLMTKK---------LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGY   74 (573)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~---------~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~   74 (573)
                      .+++.+|+.+|+++++.++.         ++|  +.|+.+|||++...+. .+++++....||||||||+|||+|+++|+
T Consensus        66 ~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a-~~~a~~~~~~gpL~GvPi~vKD~~~~~G~  144 (573)
T 3ppm_A           66 EALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-ETQLSQAPRQGLLYGVPVSLKECFSYKGH  144 (573)
T ss_dssp             HHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTH-HHHHHHCCTTCTTTTCEEEEETTBCCBTC
T ss_pred             hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHH-HHHHHhhhhcCCcCCCeEEEEcccCCCCC
Confidence            56778899999999776652         234  7799999999987552 23332223459999999999999999999


Q ss_pred             ccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhc
Q 008244           75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD  154 (573)
Q Consensus        75 ~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag  154 (573)
                      +||+||..+.+  .++.+||++|++|++||||++||||||||+++.+|.|++||+|+||||++++||||||||||+||+|
T Consensus       145 ~tt~Gs~~~~~--~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag  222 (573)
T 3ppm_A          145 DSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSG  222 (573)
T ss_dssp             CCCTTCGGGTT--CCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHHHHHHTT
T ss_pred             CcCCcChhhcC--CCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHHcC
Confidence            99999999876  4899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCC----CCcccccccCHHHHHHHHHHhcCCC-------
Q 008244          155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS----LDTVGWFARDPKILRHVGHVLLQLP-------  223 (573)
Q Consensus       155 ~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~----~d~~G~~ar~~~d~~~v~~~~~~~~-------  223 (573)
                      ++|+|+|||||||||+||+||||||||||+||||+.|++|.+++    +|++|||+|+++|+..+++++.+.+       
T Consensus       223 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~~d~~  302 (573)
T 3ppm_A          223 GSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPT  302 (573)
T ss_dssp             SCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHHCTT
T ss_pred             CCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccccccCCC
Confidence            99999999999999999999999999999999999999998765    8999999999999999998875422       


Q ss_pred             -----cc----cCCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhh--
Q 008244          224 -----FA----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN--  290 (573)
Q Consensus       224 -----~~----~~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~--  290 (573)
                           +.    ...++.||++..+..  ...+++++.++++++++.|.  |++|++ .+        .|.+.+.....  
T Consensus       303 ~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~--------~p~~~~~~~~~~~  371 (573)
T 3ppm_A          303 VPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGHTLIP-FL--------PNNIPYALEVLST  371 (573)
T ss_dssp             SCCCCCCHHHHTCCCCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTCEEEE-CC--------CTTHHHHHHTHHH
T ss_pred             CCccccchhhcccCCCCEEEEEcccC--CCCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CccHHHHHHHHHH
Confidence                 11    123456777754432  23358899999999999986  777753 22        22222111000  


Q ss_pred             ----hh-HHHHHHHHHH---------HH-H---HhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 008244          291 ----GE-LKNVMRLIQR---------YE-F---KNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSA  352 (573)
Q Consensus       291 ----~~-l~~~~~~~~~---------~e-~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~  352 (573)
                          .+ .......+..         .. .   ...+...+......+.|.+...+..+...+..++++.+..|..++++
T Consensus       372 ~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r~~  451 (573)
T 3ppm_A          372 GGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQS  451 (573)
T ss_dssp             HHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence                00 0000000000         00 0   00000001111123445555556667778899999999999999999


Q ss_pred             HHhhcC--CCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC-------------------
Q 008244          353 ISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-------------------  411 (573)
Q Consensus       353 ~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-------------------  411 (573)
                      |.+.|+  ++|+||||+ +.++++++...    . ....+.||.+||++|+|+++||+|+.                   
T Consensus       452 ~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~----~-~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~~~~~~  525 (573)
T 3ppm_A          452 VIAQWKAMNLDVLLTPM-LGPALDLNTPG----R-ATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIW  525 (573)
T ss_dssp             HHHHHHHTTCSEEEEEC-CCSCCBTTCGG----G-CGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCSSCSHH
T ss_pred             HHHHHhhcCCCEeeCCC-CCCCcCCcccc----c-cccccchhhhhHhhCCCeEEEecccccccccccccccccccchhh
Confidence            999995  599999999 45888887521    1 11345699999999999999999853                   


Q ss_pred             -----------CCCCceeEEEeccCCcHHHHHHHHHHHHHHHHH
Q 008244          412 -----------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQ  444 (573)
Q Consensus       412 -----------~glPvGlq~~~~~~~d~~ll~~a~~le~~l~~~  444 (573)
                                 +|+|||||++|++++|+.+|+++..+|++++..
T Consensus       526 d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~  569 (573)
T 3ppm_A          526 DIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQ  569 (573)
T ss_dssp             HHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             hhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcc
Confidence                       699999999999999999999999999877553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.71  E-value=8e-17  Score=138.07  Aligned_cols=109  Identities=28%  Similarity=0.367  Sum_probs=103.9

Q ss_pred             ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHH
Q 008244          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICA  536 (573)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~  536 (573)
                      .-+|+.++.++++|+.++++|+|++|++.|+++|+++|+++.+|+++|.||.++|++++|+.+|+++++++|++ .+++.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999998 58999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          537 EAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       537 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      +|.++..++.+++|++.|+++.+++|...+
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~  116 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVDPSNEE  116 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence            999999999999999999999999997543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.61  E-value=2.5e-15  Score=128.90  Aligned_cols=103  Identities=28%  Similarity=0.413  Sum_probs=96.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--------  531 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--------  531 (573)
                      .++.+..++++|+.++++|+|++|+++|+++|+++|+++.+|+|+|.||+++|+|++|+.+|+++++++|++        
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999999999875        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          532 RLICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      .+++.+|.++..++.+++|++.|++++...|
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            3778889999999999999999999988766

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.59  E-value=3.8e-15  Score=130.53  Aligned_cols=102  Identities=15%  Similarity=0.097  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NAT-----YYSNRAAAYLESGSFLQAEADCTKAINL--  527 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-------~~~-----~~~n~a~~~~~l~~~~~Al~~~~~al~l--  527 (573)
                      ..+..++++|+.+++.|+|++|+.+|+++|+++|+       +..     +|+|+|.|+.++|+|++|+.+|++||++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            46888999999999999999999999999999999       544     9999999999999999999999999999  


Q ss_pred             -----CcCc-HHH----HHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          528 -----DKKV-RLI----CAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       528 -----~p~~-~~~----~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                           +|++ +++    +++|.++..++++++|++.|+++..++|.
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence                 9998 477    99999999999999999999999999884

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.57  E-value=2.5e-14  Score=126.40  Aligned_cols=111  Identities=17%  Similarity=0.077  Sum_probs=104.4

Q ss_pred             CCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Q 008244          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-  531 (573)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-  531 (573)
                      +......+|+.+..++++|..+++.|+|++|+..|+++++++|+++.+|+++|.||..+|+|++|+..|+++++++|++ 
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence            3444556789999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          532 RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ..++.++.++..++++++|++.|+++..+.|.
T Consensus       105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            59999999999999999999999999998874

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.7e-13  Score=116.76  Aligned_cols=101  Identities=32%  Similarity=0.389  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      |..++.++++|..+++.|+|++|+..|+++|+++|+++.+|+++|.||+++|+|++|+.+|+++++++|++ ..++.++.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999998 48899999


Q ss_pred             HHHHHHHHHHHHHHHhhccccC
Q 008244          540 QERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~  561 (573)
                      ++..++.+++|++.|+++..++
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhC
Confidence            9999999999999999999988

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.48  E-value=3.1e-13  Score=120.98  Aligned_cols=110  Identities=25%  Similarity=0.267  Sum_probs=103.5

Q ss_pred             CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHH
Q 008244          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLIC  535 (573)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~  535 (573)
                      ...++..+..++.+|..+++.|+|++|++.|+++|+++|+++.+|+++|.||+++|+|++|+.+|+++++++|++ ..++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   83 (164)
T 3sz7_A            4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS   83 (164)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            445678899999999999999999999999999999999999999999999999999999999999999999998 5889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      .++.++..++.+++|++.|+++..++|...+
T Consensus        84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            9999999999999999999999999987554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.48  E-value=1.5e-13  Score=121.42  Aligned_cols=107  Identities=13%  Similarity=0.051  Sum_probs=98.6

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      .+|+.+..++.+|..|++.|+|++|++.|+++|+++|+++.+|+++|.||.++|++++|+.+|+++++++|++. +++.+
T Consensus        26 ~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  105 (150)
T 4ga2_A           26 SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI  105 (150)
T ss_dssp             SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34578889999999999999999999999999999999999999999999999999999999999999999985 88889


Q ss_pred             HHHHHHHHHHHHHHHHH-hhccccCCCCC
Q 008244          538 AQQERCLDITRRQLKIF-HMHWSWSPPIK  565 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~-~~~~~~~~~~~  565 (573)
                      +.++..++.+.++.+.| +++.+++|..+
T Consensus       106 a~~~~~~~~~~~aa~~~~~~al~l~P~~~  134 (150)
T 4ga2_A          106 AELLCKNDVTDGRAKYWVERAAKLFPGSP  134 (150)
T ss_dssp             HHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence            99999999988888765 89999999654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.48  E-value=1.3e-13  Score=123.30  Aligned_cols=106  Identities=19%  Similarity=0.310  Sum_probs=99.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------------------NGNNATYYSNRAAAYLESGSFLQAEADC  521 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~------------------~p~~~~~~~n~a~~~~~l~~~~~Al~~~  521 (573)
                      ..+.+..++++|+.+++.|+|++|+..|+++|++                  +|.+..+|+|+|.||+++|+|++|+.+|
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3467899999999999999999999999999999                  7778899999999999999999999999


Q ss_pred             HHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          522 TKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       522 ~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +++++++|++ .+++.+|.++..++.+++|++.|+++..++|...
T Consensus        87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            9999999998 5999999999999999999999999999998644

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.46  E-value=5.1e-13  Score=117.65  Aligned_cols=109  Identities=10%  Similarity=0.023  Sum_probs=102.2

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~  537 (573)
                      .+|+....+.++|..+++.|+|++|+..|+++++++|+++.+|+++|.||..+|+|++|+..|+++++++|++ ..++.+
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999999999999999999998 588999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPIKEH  567 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  567 (573)
                      +.++..++.+++|++.|+++..++|..++.
T Consensus        96 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           96 AECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            999999999999999999999988865443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.43  E-value=9.8e-13  Score=114.77  Aligned_cols=111  Identities=15%  Similarity=0.091  Sum_probs=103.1

Q ss_pred             CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHH
Q 008244          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLI  534 (573)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~  534 (573)
                      ....+|+....++.+|..+++.|+|++|+..|+++++.+|+++.+|+++|.||..+|+|++|+..|+++++++|++ ..+
T Consensus        10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   89 (142)
T 2xcb_A           10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP   89 (142)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence            3445678899999999999999999999999999999999999999999999999999999999999999999998 588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          535 CAEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       535 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      +.++.++..++.+++|++.|+++..++|...+
T Consensus        90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           90 FHAAECHLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence            89999999999999999999999998885444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.43  E-value=2e-12  Score=109.50  Aligned_cols=102  Identities=15%  Similarity=-0.003  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~  542 (573)
                      ...++++|..+++.|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|++. .++.++.++.
T Consensus        17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999999999999999999999999999999984 8889999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      .++.+++|++.|++...++|...
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC------
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCC
Confidence            99999999999999999998654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.32  E-value=4.8e-12  Score=139.80  Aligned_cols=139  Identities=14%  Similarity=0.046  Sum_probs=110.0

Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 008244          424 HGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN  503 (573)
Q Consensus       424 ~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n  503 (573)
                      +.+-..+.+++..+.+..+-.......+.   -...+|+.+..+.++|+.+.++|++++|++.|+++|+++|+++.+|+|
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~k---Al~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRK---ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHH---HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            33445667777776654333322222222   223456678889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          504 RAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       504 ~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +|.+|.++|++++|++.|++|++++|++ .+++.+|.++..++++++|++.|+++.+++|...
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  145 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP  145 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999999999998 4888889999999999999999999999988643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.31  E-value=7.3e-12  Score=138.31  Aligned_cols=100  Identities=22%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      +.+..+.++|+.+.+.|++++|+++|+++|+++|+++.+|+|+|.+|.++|++++|+++|++|++++|++. +++.++.+
T Consensus        75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~  154 (723)
T 4gyw_A           75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC  154 (723)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence            33444555555555555555555555555555555555555555555555555555555555555555542 44444444


Q ss_pred             HHHHHHHHHHHHHHhhccccC
Q 008244          541 ERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~  561 (573)
                      +..++++++|.+.|++..++.
T Consensus       155 l~~~g~~~~A~~~~~kal~l~  175 (723)
T 4gyw_A          155 LQIVCDWTDYDERMKKLVSIV  175 (723)
T ss_dssp             HHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHhC
Confidence            444455555555554444433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.31  E-value=7.4e-12  Score=107.79  Aligned_cols=104  Identities=28%  Similarity=0.365  Sum_probs=97.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      ++..+..+..+|..+++.|+|++|+..|+++++++|+++.+|+++|.||+.+|++++|+.+|+++++++|++ ..++.++
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            345688999999999999999999999999999999999999999999999999999999999999999998 4888999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .++..++.+++|++.|.++..++|.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChh
Confidence            9999999999999999999988775

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.29  E-value=1.4e-11  Score=129.52  Aligned_cols=106  Identities=21%  Similarity=0.286  Sum_probs=93.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKA  524 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---------------~~~~~n~a~~~~~l~~~~~Al~~~~~a  524 (573)
                      +++.+..++++|+.++++|+|++|+.+|+++|+++|++               ..+|+|+|.||+++++|++|+.+|++|
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            35678889999999999999999999999999999988               799999999999999999999999999


Q ss_pred             HHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          525 INLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       525 l~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++++|++ .+++.++.++..++.+++|++.|+++.+++|...
T Consensus       344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~  385 (457)
T 1kt0_A          344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  385 (457)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred             HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            9999988 5889999999999999999999999999988654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.27  E-value=5.4e-11  Score=101.42  Aligned_cols=93  Identities=12%  Similarity=0.146  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 008244          437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ  516 (573)
Q Consensus       437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~  516 (573)
                      +++++....+.....         |..+..+.++|..+++.|++++|++.|+++|+++|++..+|+++|.||..+|++++
T Consensus        29 ~~~A~~~~~~al~~~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   99 (126)
T 4gco_A           29 YPTAMRHYNEAVKRD---------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSK   99 (126)
T ss_dssp             HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhC---------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHH
Confidence            444555444444433         46789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCcCcH-HHHHHH
Q 008244          517 AEADCTKAINLDKKVR-LICAEA  538 (573)
Q Consensus       517 Al~~~~~al~l~p~~~-~~~~~~  538 (573)
                      |+++|+++++++|++. +...++
T Consensus       100 A~~~~~~al~l~P~~~~a~~~l~  122 (126)
T 4gco_A          100 AQRAYEDALQVDPSNEEAREGVR  122 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCCHHHHHHHH
Confidence            9999999999999995 443333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.27  E-value=1.7e-11  Score=123.51  Aligned_cols=104  Identities=18%  Similarity=0.220  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAI  525 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---------------~~~~~n~a~~~~~l~~~~~Al~~~~~al  525 (573)
                      +..+..++++|+.+++.|+|++|+.+|+++|+++|++               ..+|+|+|.||+++|+|++|+.+|++++
T Consensus       144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567777778888888888888888888888887777               5777888888888888888888888888


Q ss_pred             HhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          526 NLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       526 ~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +++|++ .+++.++.++..++.+++|++.|+++..++|..
T Consensus       224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            888776 477777777777778888888888777777754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.25  E-value=2.7e-11  Score=103.19  Aligned_cols=110  Identities=25%  Similarity=0.394  Sum_probs=102.2

Q ss_pred             CCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HH
Q 008244          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RL  533 (573)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~  533 (573)
                      ......+.....++.+|..+++.|+|++|+..|+++++.+|++..+|+++|.+|..++++++|+..++++++++|++ ..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   86 (133)
T 2lni_A            7 HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG   86 (133)
T ss_dssp             TTCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence            34456678899999999999999999999999999999999999999999999999999999999999999999998 58


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ++.++.++..++.+++|.+.|++...++|..
T Consensus        87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A           87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence            8889999999999999999999999988854

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.25  E-value=3.2e-11  Score=113.37  Aligned_cols=105  Identities=13%  Similarity=0.081  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      |..+..+..+|..+++.|++++|+..|+++|+++|+++.+|+++|.++.++|++++|+..|+++++++|++. .++.++.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999999999999984 8888999


Q ss_pred             HHHHH-----------HHHHHHHHHHhhccccCCCCC
Q 008244          540 QERCL-----------DITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       540 ~~~~~-----------~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++..+           +.+++|++.|+++.+++|...
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            99999           999999999999999998643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.25  E-value=9.3e-12  Score=102.77  Aligned_cols=93  Identities=22%  Similarity=0.308  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------H-HHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV------R-LIC  535 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~------~-~~~  535 (573)
                      .+..+.++|..+++.|+|++|++.|+++++++|+++.+|+++|.||.++|++++|+.+|+++++++|++      . .++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            477899999999999999999999999999999999999999999999999999999999999999996      2 555


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 008244          536 AEAQQERCLDITRRQLKIFH  555 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~  555 (573)
                      .++.++..++.++++++.|+
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHH
Confidence            56666665555444444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.24  E-value=1.9e-10  Score=107.19  Aligned_cols=94  Identities=15%  Similarity=0.039  Sum_probs=82.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH--------
Q 008244          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ--------  540 (573)
Q Consensus       470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~--------  540 (573)
                      +|..+++.|+|++|+..|+++|+++|++..+|+++|.+|..+|++++|+..|+++++++|++. +++.++.+        
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999973 33333322        


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhccccCCC
Q 008244          541 ---------------------------ERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       541 ---------------------------~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                                                 ...++.+++|...|+++.+++|.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence                                       22235678999999999999885

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.24  E-value=1.4e-11  Score=126.17  Aligned_cols=104  Identities=9%  Similarity=-0.070  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQ-WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~-~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      |+....|.++|..+.+.|+ |++|+..|+++|+++|++..+|++||.+|..+|++++|+.+|+++|+++|++ .+++.++
T Consensus       128 P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg  207 (382)
T 2h6f_A          128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ  207 (382)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHH
Confidence            4778899999999999996 9999999999999999999999999999999999999999999999999998 4888889


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .++..++.+++|++.|+++..++|..
T Consensus       208 ~~~~~~g~~~eAl~~~~~al~l~P~~  233 (382)
T 2h6f_A          208 WVIQEFKLWDNELQYVDQLLKEDVRN  233 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999988854

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.23  E-value=5.3e-11  Score=109.92  Aligned_cols=105  Identities=21%  Similarity=0.217  Sum_probs=91.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRAAAYLESGSFLQAEADCTK  523 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~----------------~~~~n~a~~~~~l~~~~~Al~~~~~  523 (573)
                      .++.+..+.++|+.+++.|+|++|+..|++++++.|+++                .+|+++|.||+++|+|++|+.+|++
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            345677888999999999999999999999999888876                8899999999999999999999999


Q ss_pred             HHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          524 AINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       524 al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +++++|++ .+++.++.++..++.+++|++.|+++..++|..
T Consensus       114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A          114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            99999987 488888888888899999999999988888754

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=4.8e-11  Score=103.75  Aligned_cols=108  Identities=25%  Similarity=0.269  Sum_probs=100.0

Q ss_pred             ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HH
Q 008244          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RL  533 (573)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~  533 (573)
                      ..++..+..++.+|..+++.|+|++|++.|+++++++|++   ..+|+++|.+|..++++++|+..|+++++++|++ ..
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            3446678999999999999999999999999999999998   8999999999999999999999999999999988 48


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++.++.++..++.+++|.+.|++...++|...
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK  133 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            88899999999999999999999999988643

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.22  E-value=1.2e-10  Score=96.55  Aligned_cols=103  Identities=27%  Similarity=0.333  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQE  541 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~  541 (573)
                      .+..++.+|..++..|+|++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++ ..++.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999999997 4788889999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ..++.+++|.+.|+....++|...
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNP  106 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCH
Confidence            999999999999999999988543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.21  E-value=2.6e-11  Score=99.69  Aligned_cols=104  Identities=15%  Similarity=0.123  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c-HHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--V-RLICAE  537 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--~-~~~~~~  537 (573)
                      |..+..+..+|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..++++++++|+  + ..++.+
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            3446678889999999999999999999999999999999999999999999999999999999999999  6 588889


Q ss_pred             HHHHHHH-HHHHHHHHHHhhccccCCCC
Q 008244          538 AQQERCL-DITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       538 ~~~~~~~-~~~~~al~~~~~~~~~~~~~  564 (573)
                      +.++..+ +.+++|++.|+......|..
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999999 99999999999999988864

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.21  E-value=3.6e-11  Score=112.14  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN----------------RAAAYLESGSFLQAEADCTKAIN  526 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n----------------~a~~~~~l~~~~~Al~~~~~al~  526 (573)
                      .+..+..+|..+++.|+|++|+..|+++++++|+++.+|++                +|.+|.++|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            36778999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          527 LDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       527 l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++|++ .+++.++.++..++.+++|++.|+++..++|...
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~  122 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL  122 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            99998 4889999999999999999999999999999654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.21  E-value=2.7e-11  Score=118.79  Aligned_cols=103  Identities=28%  Similarity=0.358  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      ..+..++++|+.+++.|+|++|+..|+++|+.+|+++.+|+++|.||.++|++++|+.+|+++++++|++ .+++.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3478899999999999999999999999999999999999999999999999999999999999999998 588999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +..++.+++|++.|.++..++|..
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999988743

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.20  E-value=1.8e-10  Score=97.36  Aligned_cols=108  Identities=29%  Similarity=0.418  Sum_probs=99.9

Q ss_pred             CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHH
Q 008244          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLIC  535 (573)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~  535 (573)
                      ...++..+..+..+|..++..|+|++|+..|+++++.+|++..+|.++|.+|..++++++|+..++++++++|++ ..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   84 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG   84 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence            345677899999999999999999999999999999999999999999999999999999999999999999998 4888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .++.++...+.+++|.+.|+.+..++|..
T Consensus        85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           85 RMGLALSSLNKHVEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence            88999999999999999999999988854

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.20  E-value=8.5e-11  Score=102.92  Aligned_cols=97  Identities=11%  Similarity=0.002  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHhhhhcCCCCC---CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------cCCCHHHH---
Q 008244          435 QNMYASLQEQADIATKSKLSTN---TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYY---  501 (573)
Q Consensus       435 ~~le~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~-------~p~~~~~~---  501 (573)
                      ..+++++......+...+-...   ....+..+..|.++|.++.+.|+|++|+.+|+++|++       +|+++.+|   
T Consensus        25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~  104 (159)
T 2hr2_A           25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA  104 (159)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHH
Confidence            3456666666665555543111   1223345669999999999999999999999999999       99999999   


Q ss_pred             -HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          502 -SNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       502 -~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                       +|+|.++..+|++++|+.+|++|++++|++
T Consensus       105 ~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A          105 VYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence             999999999999999999999999999997

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.19  E-value=9.8e-11  Score=102.29  Aligned_cols=92  Identities=14%  Similarity=0.079  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCHHHHHH
Q 008244          434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQW----------LKAISFYTEAIKLNGNNATYYSN  503 (573)
Q Consensus       434 a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~Ai~~y~~ai~~~p~~~~~~~n  503 (573)
                      ...+++++..........+         +.++.|.+.|.++.+.+++          ++||.+|++||+++|++..+|+|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P---------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~   85 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNP---------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC   85 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            3456666666666666555         7899999999999998876          59999999999999999999999


Q ss_pred             HHHHHHHcC-----------CHHHHHHHHHHHHHhCcCcHHH
Q 008244          504 RAAAYLESG-----------SFLQAEADCTKAINLDKKVRLI  534 (573)
Q Consensus       504 ~a~~~~~l~-----------~~~~Al~~~~~al~l~p~~~~~  534 (573)
                      +|.+|..+|           +|++|+++|++|++++|++..+
T Consensus        86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence            999999985           8999999999999999998533

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.19  E-value=9.9e-11  Score=109.96  Aligned_cols=101  Identities=17%  Similarity=0.077  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244          462 QSAEIAKEKGNQAYKD-----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~-----------~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~  530 (573)
                      +.+..+.++|..+.+.           |++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++ +
T Consensus        71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~  149 (217)
T 2pl2_A           71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D  149 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c
Confidence            4455555566666655           666666666666666666666666666666666666666666666666665 4


Q ss_pred             c-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          531 V-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       531 ~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      + ..++.++.++..++++++|++.|+++..++|.
T Consensus       150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  183 (217)
T 2pl2_A          150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPK  183 (217)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4 35555566666666666666666666666654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.19  E-value=2e-10  Score=101.20  Aligned_cols=72  Identities=15%  Similarity=0.078  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      |..+..|.++|.++++.|+|++|+.+|+++++++|+++.+|+++|.||.++|++++|+..|+++++++|+..
T Consensus        67 P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           67 FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            477899999999999999999999999999999999999999999999999999999999999999999875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.17  E-value=2.2e-10  Score=101.57  Aligned_cols=99  Identities=17%  Similarity=0.100  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HH--HHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LI--CAE  537 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~--~~~  537 (573)
                      |.....+..+|..+++.|+|++|++.|+++++++|++..+|+++|.+|..+|++++|+..++++++++|++. ..  +.+
T Consensus        44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~  123 (166)
T 1a17_A           44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  123 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            334555666666666666666666666666666666666666666666666666666666666666666553 22  333


Q ss_pred             HHHHHHHHHHHHHHHHHhhccc
Q 008244          538 AQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~  559 (573)
                      +..+...+.+++|++.+.....
T Consensus       124 ~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          124 CNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccchHH
Confidence            3334445666666666655443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.17  E-value=6.2e-11  Score=103.54  Aligned_cols=90  Identities=13%  Similarity=0.048  Sum_probs=82.6

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCc-HHHHHHHHHHHH
Q 008244          475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF----------LQAEADCTKAINLDKKV-RLICAEAQQERC  543 (573)
Q Consensus       475 ~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~----------~~Al~~~~~al~l~p~~-~~~~~~~~~~~~  543 (573)
                      -+.++|++|++.|+++++++|+++.+|+|+|.++..++++          ++|+..|++||+++|++ .+++.++.++..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999875          59999999999999998 589999988887


Q ss_pred             HH-----------HHHHHHHHHhhccccCCCC
Q 008244          544 LD-----------ITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       544 ~~-----------~~~~al~~~~~~~~~~~~~  564 (573)
                      ++           .+++|++.|++++.++|..
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            74           8999999999999999964

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.16  E-value=3.4e-11  Score=121.37  Aligned_cols=108  Identities=19%  Similarity=0.238  Sum_probs=92.0

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----------------TYYSNRAAAYLESGSFLQAEADCT  522 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~-----------------~~~~n~a~~~~~l~~~~~Al~~~~  522 (573)
                      .++.+..++++|+.+++.|+|++|+.+|+++|++.|++.                 .+|+|+|.||+++++|++|+.+|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            356688899999999999999999999999999999877                 489999999999999999999999


Q ss_pred             HHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 008244          523 KAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEH  567 (573)
Q Consensus       523 ~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  567 (573)
                      ++++++|++ .++++++.++..++.+++|++.|+++..++|...+.
T Consensus       255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a  300 (338)
T 2if4_A          255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI  300 (338)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Confidence            999999988 588999999999999999999999999998865443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.16  E-value=2.9e-10  Score=103.19  Aligned_cols=104  Identities=18%  Similarity=0.082  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      +....+...|..+...+++++|++.+.++++++|++..++.++|.+|.++|++++|++.|+++++++|++. .++.+|.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~  150 (184)
T 3vtx_A           71 TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLA  150 (184)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999984 88899999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +..++.+++|++.|+++.+++|...
T Consensus       151 ~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          151 YEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhCCccCH
Confidence            9999999999999999999998543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.16  E-value=6.4e-11  Score=120.82  Aligned_cols=101  Identities=23%  Similarity=0.285  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK----------------LNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~----------------~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~  526 (573)
                      .+..++++|+.++++|+|++|+++|+++|+                .+|.+..+|+|+|.||+++++|++|+.+|+++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            355566666666666777777777776666                5556666666777777777777777777777776


Q ss_pred             hCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          527 LDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       527 l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ++|++ .+++.++.++..++.+++|++.|+++.+++|.
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~  339 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  339 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            66665 36666666666666666666666666666664

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.16  E-value=9.3e-11  Score=119.97  Aligned_cols=107  Identities=13%  Similarity=0.036  Sum_probs=101.5

Q ss_pred             ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcH-HHH
Q 008244          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKVR-LIC  535 (573)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~p~~~-~~~  535 (573)
                      .-+|+.+..+..+|..+.+.|+|++|++.|+++|+++|++..+|++||.+|..+|+ +++|+.+|+++++++|++. +++
T Consensus        91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~  170 (382)
T 2h6f_A           91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  170 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            34678899999999999999999999999999999999999999999999999997 9999999999999999984 899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .++.++..++.+++|+..|++++.++|..
T Consensus       171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          171 HRRVLVEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence            99999999999999999999999999964

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.15  E-value=2.2e-10  Score=104.04  Aligned_cols=103  Identities=14%  Similarity=0.044  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      +.+..+..+|..+.+.|++++|+..+.++++.+|++..++.++|.++...+++++|+..++++++++|++. .+..++.+
T Consensus        37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~  116 (184)
T 3vtx_A           37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV  116 (184)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444442 44555666


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +..++.+++|++.|+++.+++|..
T Consensus       117 ~~~~g~~~~A~~~~~~~l~~~p~~  140 (184)
T 3vtx_A          117 YDSMGEHDKAIEAYEKTISIKPGF  140 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhCCchhHHHHHHHHHHhcchh
Confidence            666677777777777777776643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.13  E-value=2.7e-10  Score=96.32  Aligned_cols=102  Identities=25%  Similarity=0.386  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--------RL  533 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--------~~  533 (573)
                      +.+..+..+|..+++.|+|++|+..|+++++.+|++..+++++|.+|..+|++++|+..|+++++++|++        ..
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999999999999998864        37


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ++.++.++..++.+++|.+.|+....+.|.
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            788899999999999999999999988773

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.13  E-value=2.3e-10  Score=107.95  Aligned_cols=103  Identities=16%  Similarity=0.141  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p-~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      .+..++++|..+++.|+|++|+..|+++++++| .+..+++++|.||..+|++++|+.+|+++++++|++ ..++.++.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            358899999999999999999999999999999 999999999999999999999999999999999998 488889999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +..++.+++|++.|+++.+++|...
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcH
Confidence            9999999999999999999998643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.12  E-value=2.7e-10  Score=96.67  Aligned_cols=100  Identities=12%  Similarity=0.043  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---H-HHHHH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---R-LICAE  537 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~---~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~-~~~~~  537 (573)
                      +.++++|..+++.|+|++|+..|+++++.+|++.   .+++++|.+|+++|+|++|+..|+++++++|++   . .++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3467889999999999999999999999999887   799999999999999999999999999999987   3 67888


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +.++..++.+++|.+.|+......|..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            999999999999999999988887753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.11  E-value=3.8e-10  Score=91.16  Aligned_cols=92  Identities=13%  Similarity=0.104  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH
Q 008244          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLD  545 (573)
Q Consensus       467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~-~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~  545 (573)
                      ..++|..+++.|+|++|++.|+++++.+|++.. +|+++|.||..+|++++|+..|+++++++|++...+..       +
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------~   75 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------K   75 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------H
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------H
Confidence            367899999999999999999999999999999 99999999999999999999999999999998533211       6


Q ss_pred             HHHHHHHHHhhccccCCCCC
Q 008244          546 ITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       546 ~~~~al~~~~~~~~~~~~~~  565 (573)
                      .+.+++..|++....+|...
T Consensus        76 ~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHhccCcccc
Confidence            77788888888887777543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.10  E-value=8.1e-10  Score=104.10  Aligned_cols=105  Identities=18%  Similarity=0.143  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------TYYSNRAAAYLESGSFLQAEADCTKAINLDKK--V  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~-------~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--~  531 (573)
                      |.....+..+|..+++.|+|++|++.|+++++++|++.       .+|.++|.++..+|++++|+..|+++++++|+  +
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  152 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK  152 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc
Confidence            46788999999999999999999999999999999998       67999999999999999999999999999999  6


Q ss_pred             -HHHHHHHHHHHHHHHH---------------------------HHHHHHHhhccccCCCCC
Q 008244          532 -RLICAEAQQERCLDIT---------------------------RRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       532 -~~~~~~~~~~~~~~~~---------------------------~~al~~~~~~~~~~~~~~  565 (573)
                       ..++.++.++..++..                           ++|+..|+++.+++|...
T Consensus       153 ~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  214 (228)
T 4i17_A          153 TDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRT  214 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Confidence             3666666666665555                           899999999999998654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.10  E-value=2.6e-10  Score=92.78  Aligned_cols=72  Identities=10%  Similarity=0.123  Sum_probs=67.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      +|+.+..++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.||.++|++++|+..|++++++.|+.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            567788999999999999999999999999999999999999999999999999999999999999998765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.07  E-value=2.7e-11  Score=106.71  Aligned_cols=98  Identities=11%  Similarity=0.008  Sum_probs=88.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHH
Q 008244          469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDIT  547 (573)
Q Consensus       469 ~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~  547 (573)
                      .+|..+..+|++++|+..|.++++.+|+++..++++|.+|+++|+|++|++.|+++++++|++. +++.++.++..++.+
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            3678888899999999999999999999999999999999999999999999999999999984 889999999999999


Q ss_pred             HHHHHHHhhccccCCCCCC
Q 008244          548 RRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       548 ~~al~~~~~~~~~~~~~~~  566 (573)
                      ++|+..|+++.+++|...+
T Consensus        82 ~~A~~~~~~al~~~p~~~~  100 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKD  100 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhCCCCHH
Confidence            9999999999999996543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.07  E-value=1.6e-09  Score=85.60  Aligned_cols=82  Identities=29%  Similarity=0.378  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      +..+..+..+|..+++.++|++|+..|+++++.+|++..+|+++|.+|.+++++++|+..++++++++|++. .+..++.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999999999984 5566665


Q ss_pred             HHH
Q 008244          540 QER  542 (573)
Q Consensus       540 ~~~  542 (573)
                      ++.
T Consensus        86 ~~~   88 (91)
T 1na3_A           86 AKQ   88 (91)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.07  E-value=7.4e-10  Score=99.93  Aligned_cols=105  Identities=19%  Similarity=0.236  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-YLESGSF--LQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~-~~~l~~~--~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      .....+..+|..++..|+|++|+..|+++++++|+++.++.++|.+ |...+++  ++|+..++++++++|++. .++.+
T Consensus        42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  121 (177)
T 2e2e_A           42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL  121 (177)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4578899999999999999999999999999999999999999999 8899999  999999999999999984 88889


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      +.++...+.+++|++.|+++..++|...+
T Consensus       122 a~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          122 ASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            99999999999999999999999987543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.05  E-value=1.7e-09  Score=90.36  Aligned_cols=102  Identities=25%  Similarity=0.291  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE  541 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~  541 (573)
                      .+..+..+|..+++.|++++|++.|+++++.+|++..+++++|.+|...|++++|+..++++++++|++. .++.++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            3778899999999999999999999999999999999999999999999999999999999999999874 777888999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ...+.+++|++.|++....+|..
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNN  110 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999988854

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.05  E-value=2.7e-09  Score=107.29  Aligned_cols=89  Identities=20%  Similarity=0.122  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE  541 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~  541 (573)
                      .+..+.++|..+++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++. +++.++.++
T Consensus       195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999999999999999999999999999985 777778888


Q ss_pred             HHHHHHHHHH
Q 008244          542 RCLDITRRQL  551 (573)
Q Consensus       542 ~~~~~~~~al  551 (573)
                      ..++.++++.
T Consensus       275 ~~~~~~~~a~  284 (336)
T 1p5q_A          275 QRIRRQLARE  284 (336)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887777773

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.04  E-value=1.9e-09  Score=93.64  Aligned_cols=73  Identities=16%  Similarity=0.084  Sum_probs=69.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +|..+..+..+|..+++.|+|++|+..|+++++++|+++.+|+++|.||..+|++++|+..|+++++++|++.
T Consensus        48 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           48 DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            3467889999999999999999999999999999999999999999999999999999999999999999863

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.04  E-value=1.8e-09  Score=100.27  Aligned_cols=102  Identities=15%  Similarity=0.048  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----------
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-----------  531 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-----------  531 (573)
                      .+..+.++|..+++.|+|++|++.|+++++++|++..+|+++|.+|..+|++++|+.+|++++++.|++           
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            367899999999999999999999999999999999999999999999999999999999999988763           


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          532 ------RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       532 ------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                            ..++.++.++..++.+++|++.|+++..++|..
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                  478889999999999999999999999999853

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.04  E-value=1.5e-09  Score=104.67  Aligned_cols=106  Identities=17%  Similarity=0.215  Sum_probs=98.2

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----H
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----R  532 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~  532 (573)
                      ++..+..++.+|..+++.|+|++|+..|+++++.+|++   ..+++++|.||+++|+|++|+..|+++++++|++    .
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            44668899999999999999999999999999999999   9999999999999999999999999999999965    4


Q ss_pred             HHHHHHHHHHH--------HHHHHHHHHHHhhccccCCCCC
Q 008244          533 LICAEAQQERC--------LDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       533 ~~~~~~~~~~~--------~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +++.++.++..        .+.+++|++.|++.....|...
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            78899999998        9999999999999999888643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.03  E-value=2.4e-09  Score=95.38  Aligned_cols=72  Identities=13%  Similarity=0.042  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      |..+..+.++|..+++.|+|++|+..|+++|+++|++..+|+++|.+|..+|++++|+.+|+++++++|++.
T Consensus        42 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           42 PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence            356889999999999999999999999999999999999999999999999999999999999999999984

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.03  E-value=2.9e-09  Score=94.57  Aligned_cols=73  Identities=14%  Similarity=0.061  Sum_probs=70.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      ++..+..+.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.||..+|+|++|+.+|+++++++|++.
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            5667889999999999999999999999999999999999999999999999999999999999999999986

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.03  E-value=1.7e-10  Score=121.82  Aligned_cols=99  Identities=37%  Similarity=0.507  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      +..+.++|+.++++|+|++|++.|+++|+++|++..+|+++|.+|.++|+|++|+++|++|++++|++ ..++.++.++.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444444 24444444444


Q ss_pred             HHHHHHHHHHHHhhccccCC
Q 008244          543 CLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~  562 (573)
                      .++++++|++.|+++.+++|
T Consensus        86 ~~g~~~eA~~~~~~al~~~p  105 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKP  105 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHST
T ss_pred             HcCCHHHHHHHHHHHHHhCC
Confidence            44444444444444444444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.03  E-value=3.6e-09  Score=102.06  Aligned_cols=106  Identities=10%  Similarity=0.025  Sum_probs=96.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      ++..+..+..+|..++..|++++|+..|+++++++|++..+|.++|.+|..+|++++|+..|+++++++|++ ..++.++
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            467788999999999999999999999999999999999999999999999999999999999999999987 5888889


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      .++..++.+++|++.|+++..++|...
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999998888643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.03  E-value=1.7e-09  Score=94.86  Aligned_cols=73  Identities=16%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +|..+..|..+|..+.+.|+|++|+..|+++++++|+++.+|+++|.||..+|++++|+..|+++++++|++.
T Consensus        51 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           51 DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3466889999999999999999999999999999999999999999999999999999999999999998863

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.02  E-value=5.4e-10  Score=123.52  Aligned_cols=103  Identities=9%  Similarity=-0.082  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      |+.+..++++|..+++.|+|++|++.|+++++++|+++.+|+++|.+|.++|+|++ +++|++|++++|++ .+++.++.
T Consensus       464 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~  542 (681)
T 2pzi_A          464 GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR  542 (681)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence            46688899999999999999999999999999999999999999999999999999 99999999999998 48888999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ++..++++++|++.|+++.+++|..
T Consensus       543 ~~~~~g~~~~A~~~~~~al~l~P~~  567 (681)
T 2pzi_A          543 ARSAEGDRVGAVRTLDEVPPTSRHF  567 (681)
T ss_dssp             HHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred             HHHHcCCHHHHHHHHHhhcccCccc
Confidence            9999999999999999999999864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.02  E-value=3.4e-09  Score=89.65  Aligned_cols=72  Identities=19%  Similarity=0.144  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD------KKVR  532 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~------p~~~  532 (573)
                      |..+..+.++|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++      |++.
T Consensus        35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~  112 (126)
T 3upv_A           35 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR  112 (126)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred             CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999      7764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.01  E-value=1.2e-10  Score=97.64  Aligned_cols=73  Identities=18%  Similarity=0.047  Sum_probs=70.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +|.....+.++|..+++.|+|++|+..|+++++++|+++.+++++|.||.++|++++|+..++++++++|++.
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~   95 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            5888999999999999999999999999999999999999999999999999999999999999999999986

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.01  E-value=6.5e-09  Score=91.93  Aligned_cols=105  Identities=36%  Similarity=0.470  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      .+.+..+..+|..++..|+|++|+..|+++++.+|++..+|+++|.+|..+|++++|+..++++++++|++ ..++.++.
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~   89 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            46688999999999999999999999999999999999999999999999999999999999999999998 48888999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++..++.+++|++.|+++..++|...
T Consensus        90 ~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           90 SNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999988643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.01  E-value=5.7e-09  Score=99.41  Aligned_cols=102  Identities=31%  Similarity=0.394  Sum_probs=97.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      +|.....+..+|..+++.|+|++|+..|+++++.+|++..+|.++|.+|..+|++++|+..|+++++++|++ ..++.++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  214 (258)
T 3uq3_A          135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA  214 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999999999999998 4888899


Q ss_pred             HHHHHHHHHHHHHHHHhhccccC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                      .++..++.+++|++.|+++.+++
T Consensus       215 ~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          215 TAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhC
Confidence            99999999999999999999888

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.00  E-value=2.8e-09  Score=89.13  Aligned_cols=90  Identities=14%  Similarity=0.076  Sum_probs=79.9

Q ss_pred             HcCCHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHH
Q 008244          476 KDKQWLKAISFYTEAIKL---NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQL  551 (573)
Q Consensus       476 ~~~~~~~Ai~~y~~ai~~---~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al  551 (573)
                      ..|+|++|+..|+++|++   +|++..+|+++|.+|..+|+|++|+..|+++++++|++. .++.++.++..++.+++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   699999999999999999999999999999999999984 8888999999999999999


Q ss_pred             HHHhhccccCCCCC
Q 008244          552 KIFHMHWSWSPPIK  565 (573)
Q Consensus       552 ~~~~~~~~~~~~~~  565 (573)
                      +.|+++....|..+
T Consensus        82 ~~~~~al~~~p~~~   95 (117)
T 3k9i_A           82 ELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHCCCH
T ss_pred             HHHHHHHHhCCCcH
Confidence            99999998877543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.99  E-value=2.3e-09  Score=113.19  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQW-LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~-~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~  539 (573)
                      +..+..+..+|..++..|+| ++|++.|+++++++|+++.+|+++|.+|.++|++++|++.|+++++++|+...++.++.
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~  178 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM  178 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            35689999999999999999 99999999999999999999999999999999999999999999999999778889999


Q ss_pred             HHHHH---------HHHHHHHHHHhhccccCCCC
Q 008244          540 QERCL---------DITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       540 ~~~~~---------~~~~~al~~~~~~~~~~~~~  564 (573)
                      ++..+         +.+++|++.|+++..++|..
T Consensus       179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  212 (474)
T 4abn_A          179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD  212 (474)
T ss_dssp             HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence            99999         99999999999999999864

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.96  E-value=2.1e-09  Score=90.74  Aligned_cols=72  Identities=13%  Similarity=-0.035  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      |+.+..+..+|..+.+.|++++|+..|+++++++|++..+|+++|.+|..+|++++|+..++++++++|++.
T Consensus        48 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           48 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            467899999999999999999999999999999999999999999999999999999999999999999863

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.96  E-value=6.3e-09  Score=109.29  Aligned_cols=91  Identities=14%  Similarity=0.094  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE  541 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~  541 (573)
                      ....+.++|.++++.++|++|+..|+++|+++|++..+|+++|.+|+.+++|++|+.+|++|++++|++. ++..++.++
T Consensus       316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999999999999999999999999999985 777788888


Q ss_pred             HHHHHHHHHHHH
Q 008244          542 RCLDITRRQLKI  553 (573)
Q Consensus       542 ~~~~~~~~al~~  553 (573)
                      ..++.++++.+.
T Consensus       396 ~~~~~~~~a~~~  407 (457)
T 1kt0_A          396 KKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888777776654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.95  E-value=4.6e-09  Score=110.90  Aligned_cols=104  Identities=14%  Similarity=0.046  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      |+.+..+.++|..+++.|+|++|++.|+++++++|+++.+|+++|.+|.++|++++|++.|+++++++|++. .+..++.
T Consensus        37 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~  116 (477)
T 1wao_1           37 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  116 (477)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            356899999999999999999999999999999999999999999999999999999999999999999974 5555555


Q ss_pred             H--HHHHHHHHHHHHHHh-----------hccccCCCC
Q 008244          540 Q--ERCLDITRRQLKIFH-----------MHWSWSPPI  564 (573)
Q Consensus       540 ~--~~~~~~~~~al~~~~-----------~~~~~~~~~  564 (573)
                      +  +...+++++|++.++           .+..++|..
T Consensus       117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          117 CNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            5  666799999999999           777766654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.94  E-value=9.1e-09  Score=104.82  Aligned_cols=95  Identities=18%  Similarity=0.184  Sum_probs=86.2

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      .++..+..+.++|..+++.++|++|++.|+++|+++|+++.+|+++|.+|..+++|++|+.+|++|++++|++. ....+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999985 66667


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008244          538 AQQERCLDITRRQLKI  553 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~  553 (573)
                      +.++..++.++++.+.
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7888877877777655

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.94  E-value=1.3e-08  Score=85.87  Aligned_cols=102  Identities=23%  Similarity=0.298  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      .....+...|..+.+.|++++|+..|+++++..|++..++.++|.++...|++++|++.++++++++|++ ..++.++.+
T Consensus        33 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  112 (136)
T 2fo7_A           33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA  112 (136)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            3467888999999999999999999999999999999999999999999999999999999999999987 477788899


Q ss_pred             HHHHHHHHHHHHHHhhccccCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +...+.+++|.+.|+.....+|.
T Consensus       113 ~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          113 YYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHccHHHHHHHHHHHHccCCC
Confidence            98899999999999999887774

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.93  E-value=9e-09  Score=94.71  Aligned_cols=96  Identities=18%  Similarity=0.126  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~  542 (573)
                      ...+.++|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|++. ....++.+..
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999999999999999999999999999999985 6677778888


Q ss_pred             HHHHHHHHH-HHHhhccc
Q 008244          543 CLDITRRQL-KIFHMHWS  559 (573)
Q Consensus       543 ~~~~~~~al-~~~~~~~~  559 (573)
                      .++..+++. +.|...+.
T Consensus       168 ~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          168 KLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            887777776 44444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.92  E-value=1.5e-09  Score=119.94  Aligned_cols=106  Identities=17%  Similarity=0.061  Sum_probs=99.7

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~  537 (573)
                      .+|+.+..+..+|..+++.|+|++|++.|+++++++|+++.+|+++|.+|+.+|+|++|+++|++|++++|++ .+++.+
T Consensus       428 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l  507 (681)
T 2pzi_A          428 DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL  507 (681)
T ss_dssp             CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred             ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            3456788999999999999999999999999999999999999999999999999999999999999999998 588899


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +.++..++++++ ++.|+++++++|...
T Consensus       508 g~~~~~~g~~~~-~~~~~~al~~~P~~~  534 (681)
T 2pzi_A          508 AATAELAGNTDE-HKFYQTVWSTNDGVI  534 (681)
T ss_dssp             HHHHHHHTCCCT-TCHHHHHHHHCTTCH
T ss_pred             HHHHHHcCChHH-HHHHHHHHHhCCchH
Confidence            999999999999 999999999999654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.92  E-value=5.8e-09  Score=105.56  Aligned_cols=102  Identities=13%  Similarity=0.110  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQE  541 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~  541 (573)
                      .+..+..+|..+.+.|++++|++.|+++++++|+++.+|+++|.+|.++|++++|+..|+++++++|++ ..++.++.++
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999998 4888899999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ..++.+++|++.|+++..+.|..
T Consensus       292 ~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          292 INLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             HHCCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999988754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.92  E-value=1e-08  Score=110.74  Aligned_cols=104  Identities=13%  Similarity=0.005  Sum_probs=97.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      |+....+.++|..+.+.|++++|++.|+++++++|++..+|+++|.+|.++|++++|++.|+++++++|++. .++.++.
T Consensus        54 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  133 (568)
T 2vsy_A           54 PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN  133 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999999999999999984 7888899


Q ss_pred             HHHHH---HHHHHHHHHHhhccccCCCC
Q 008244          540 QERCL---DITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       540 ~~~~~---~~~~~al~~~~~~~~~~~~~  564 (573)
                      ++..+   +.+++|.+.|+++...+|..
T Consensus       134 ~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          134 WRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            99999   99999999999999988864

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.91  E-value=3.8e-09  Score=114.26  Aligned_cols=105  Identities=5%  Similarity=-0.117  Sum_probs=98.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      +|+....+.++|..+++.|+|++|++.|+++++++|++..+|+++|.+|..+|++++|++.|+++++++|++ ..++.++
T Consensus        19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   98 (568)
T 2vsy_A           19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG   98 (568)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            446688999999999999999999999999999999999999999999999999999999999999999998 4888899


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .++..++++++|++.|+++.+++|..
T Consensus        99 ~~~~~~g~~~~A~~~~~~al~~~p~~  124 (568)
T 2vsy_A           99 HALEDAGQAEAAAAAYTRAHQLLPEE  124 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999998854

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.91  E-value=9.6e-09  Score=87.38  Aligned_cols=87  Identities=9%  Similarity=0.135  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHH
Q 008244          437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYL  509 (573)
Q Consensus       437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-------~~~~~n~a~~~~  509 (573)
                      +++++....+.+..         +|+.+..+.++|.++++.|+|++|++.|+++|+++|++       +.+|+++|.+|.
T Consensus        24 ~~~A~~~y~~Al~~---------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           24 FEKAHVHYDKAIEL---------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             HHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh---------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            44455554444443         34668899999999999999999999999999998875       468999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCcCcH
Q 008244          510 ESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       510 ~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      .++++++|++.|+++++++|+..
T Consensus        95 ~~~~~~~A~~~~~kal~~~~~~~  117 (127)
T 4gcn_A           95 KQNDLSLAVQWFHRSLSEFRDPE  117 (127)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCCHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcCHH
Confidence            99999999999999999998754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.91  E-value=6.8e-09  Score=100.01  Aligned_cols=104  Identities=13%  Similarity=0.098  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcCCHH
Q 008244          461 KQSAEIAKEKGNQAYK--------DKQWLKAISFYTEAIKLNGNNATYY-----------------SNRAAAYLESGSFL  515 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~--------~~~~~~Ai~~y~~ai~~~p~~~~~~-----------------~n~a~~~~~l~~~~  515 (573)
                      +.....++.+|..+++        .|++++|+..|+++++..|++..++                 +++|.+|+++|+|+
T Consensus        86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~  165 (261)
T 3qky_A           86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE  165 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence            4556778888888888        8888888888888888888775444                 77888888888888


Q ss_pred             HHHHHHHHHHHhCcCc----HHHHHHHHHHHHH----------HHHHHHHHHHhhccccCCCC
Q 008244          516 QAEADCTKAINLDKKV----RLICAEAQQERCL----------DITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       516 ~Al~~~~~al~l~p~~----~~~~~~~~~~~~~----------~~~~~al~~~~~~~~~~~~~  564 (573)
                      +|+..|+++++.+|++    .+++.++.++..+          +.+++|++.|.+.....|..
T Consensus       166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            8888888888888874    3677777777766          78888888888888777753

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.90  E-value=1.3e-08  Score=91.32  Aligned_cols=104  Identities=14%  Similarity=0.053  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      .....+..+|..+++.|++++|++.|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++ ..++.++.+
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  153 (186)
T 3as5_A           74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS  153 (186)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999999999999999988 478888999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +...+.+++|++.|++..++.|...
T Consensus       154 ~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          154 YEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCch
Confidence            9999999999999999988877543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.90  E-value=1.6e-08  Score=95.13  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH----HHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR----LICA  536 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~----~~~~  536 (573)
                      +..++++|..+++.|+|++|+..|+++++..|++   ..+++++|.||+++|+|++|+..|+++++++|++.    +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            6778999999999999999999999999999986   47999999999999999999999999999999973    6778


Q ss_pred             HHHHHHH------------------HHHHHHHHHHHhhccccCCCCC
Q 008244          537 EAQQERC------------------LDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       537 ~~~~~~~------------------~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++.++..                  .+.+++|++.|+...+..|...
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            8877665                  4789999999999999888654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.89  E-value=3.7e-09  Score=111.66  Aligned_cols=100  Identities=13%  Similarity=0.058  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh
Q 008244          465 EIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES--------GSFLQAEADCTKAINL  527 (573)
Q Consensus       465 ~~~~~~g~~~~~~---------~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l--------~~~~~Al~~~~~al~l  527 (573)
                      ..+.++|..+.+.         |+|++|++.|+++++++|++..+|+++|.+|..+        +++++|+..|++++++
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            5566666666666         6666666666666666666666666666666666        6666666666666666


Q ss_pred             Cc---Cc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          528 DK---KV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       528 ~p---~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +|   ++ ..++.++.++..++.+++|++.|+++..++|..
T Consensus       251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            66   44 356666666666666666666666666666643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.88  E-value=9.2e-09  Score=85.49  Aligned_cols=71  Identities=8%  Similarity=0.075  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      |..+..+..+|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|+.
T Consensus        16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            35578999999999999999999999999999999999999999999999999999999999999999865

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.87  E-value=1.3e-08  Score=101.79  Aligned_cols=100  Identities=21%  Similarity=0.151  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQE  541 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~  541 (573)
                      +++.+..+|..+++.|+|++|+..|+++++.+|+++.+|+++|.+|..+|++++|+..|+++++++|++ ..++.++.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999988 4888899999


Q ss_pred             HHHHHHHHHHHHHhhccccCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~  562 (573)
                      ...+.+++|++.|++..+..|
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHcCChHHHHHHHHHHHhcCC
Confidence            999999999999999999888

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.86  E-value=2.4e-08  Score=100.75  Aligned_cols=123  Identities=12%  Similarity=0.060  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCCCccChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 008244          433 TVQNMYASLQEQADIATKSKLSTNTFNQKQ--SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE  510 (573)
Q Consensus       433 ~a~~le~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~  510 (573)
                      ....+++++..........+         .  .+..+..+|..+++.|++++|+..|+++++++|+++.+|+++|.+|.+
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  263 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDP---------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN  263 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHST---------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            44455555555444444333         3  578899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          511 SGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       511 l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +|++++|+..|+++++++|++ ..++.++.++..++.+++|++.|+++..+.|..
T Consensus       264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999998 488889999999999999999999999887754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.86  E-value=1.3e-08  Score=94.50  Aligned_cols=101  Identities=16%  Similarity=0.086  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      ..+..++++|..+++.|+|++|+..|++++  +| ++.+|+++|.+|.++|++++|+..|+++++++|++. .++.++.+
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            456788999999999999999999999996  33 789999999999999999999999999999999984 88889999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +..++.+++|++.|+++..+.|...
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999887543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.85  E-value=1.6e-08  Score=105.27  Aligned_cols=108  Identities=20%  Similarity=0.151  Sum_probs=99.2

Q ss_pred             CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHH
Q 008244          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LIC  535 (573)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~  535 (573)
                      ...+|..+..+..+|..+++.|+|++|+..|+++++.+|++..+|+++|.+|..+|++++|+..|+++++++|++. .++
T Consensus        19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   98 (450)
T 2y4t_A           19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL   98 (450)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            3456788999999999999999999999999999999999999999999999999999999999999999999984 888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          536 AEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .++.++..++.+++|++.|++....+|..
T Consensus        99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A           99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            88999999999999999999999988853

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.85  E-value=1.2e-08  Score=107.91  Aligned_cols=102  Identities=24%  Similarity=0.328  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      .+.++.+..+|+.+++.|+|++|+..|+++++.+| ++.+|.++|.||+++|++++|+.+|+++++++|++ .+++.++.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            46789999999999999999999999999999999 69999999999999999999999999999999998 48899999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ++..++.+++|++.|++.....|.
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~  105 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDF  105 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCC
Confidence            999999999999999999988874

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.85  E-value=2.7e-08  Score=89.23  Aligned_cols=104  Identities=10%  Similarity=0.010  Sum_probs=96.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      +.....+..+|..+++.|++++|++.|+++++.+|++..++.++|.+|...|++++|++.++++++++|++. .++.++.
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  118 (186)
T 3as5_A           39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV  118 (186)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence            345788999999999999999999999999999999999999999999999999999999999999999884 7788889


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ++...+.+++|++.|+......|..
T Consensus       119 ~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A          119 ALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHcCcHHHHHHHHHHHHhcCccc
Confidence            9999999999999999999887753

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.85  E-value=8.2e-09  Score=104.44  Aligned_cols=104  Identities=15%  Similarity=0.076  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      ..+..++.+|..+++.|+|++|+..|+++++.+|++..+|+++|.+|.++|++++|+..|+++++++|++ ..++.++.+
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            4466799999999999999999999999999999999999999999999999999999999999999998 488889999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +..++.+++|++.|+++.++.|...
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~  167 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYK  167 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccch
Confidence            9999999999999999998887533

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.84  E-value=7.6e-09  Score=110.31  Aligned_cols=104  Identities=23%  Similarity=0.337  Sum_probs=92.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      .+.++.+..+|+.+++.|+|++|+..|+++++.+|+++.+|+++|.||.++|++++|++.|+++++++|++ ..++.++.
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  101 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999998 48889999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++..++.+++|++.|+ ...++|...
T Consensus       102 ~~~~~g~~~~A~~~~~-~~~~~~~~~  126 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLS-VLSLNGDFD  126 (537)
T ss_dssp             HHHHHTCHHHHHHHHH-HHC------
T ss_pred             HHHHcCCHHHHHHHHH-HHhcCCCCC
Confidence            9999999999999996 777777543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.84  E-value=1.5e-08  Score=99.65  Aligned_cols=105  Identities=16%  Similarity=0.141  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--
Q 008244          462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--  532 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~-~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--  532 (573)
                      ..+..+.++|..+.+. |++++|+.+|++++++.|.+      ..+|.++|.+|.++|+|++|+..|+++++++|++.  
T Consensus       115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  194 (292)
T 1qqe_A          115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence            4477899999999996 99999999999999998854      57899999999999999999999999999998752  


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          533 ------LICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       533 ------~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                            .++.++.++..++.+++|++.|+++..++|...+
T Consensus       195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence                  4677889999999999999999999999996543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.84  E-value=1.3e-08  Score=96.82  Aligned_cols=101  Identities=24%  Similarity=0.355  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------H
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--------R  532 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--------~  532 (573)
                      ++.++.+..+|..+++.|+|++|+..|+++++.+ ++..+|.++|.+|..+|++++|+..++++++++|++        .
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            4568889999999999999999999999999999 889999999999999999999999999999998865        4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          533 LICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       533 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      .++.++.++..++.+++|++.|+++..+.|
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  110 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHR  110 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence            777888888888999999999998888665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.84  E-value=2.1e-08  Score=84.59  Aligned_cols=100  Identities=21%  Similarity=0.274  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERC  543 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~  543 (573)
                      ..+..+|..+++.|++++|+..|+++++.+|++...+++++.++...+++++|+..++++++++|++. .++..+.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999874 77778888888


Q ss_pred             HHHHHHHHHHHhhccccCCCC
Q 008244          544 LDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       544 ~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .+.+++|++.|+...+..|..
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~  102 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRS  102 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC
T ss_pred             hcCHHHHHHHHHHHHHhCCCC
Confidence            999999999999998887753

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.83  E-value=7.1e-09  Score=93.56  Aligned_cols=107  Identities=12%  Similarity=0.046  Sum_probs=73.1

Q ss_pred             CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCc-HHH
Q 008244          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL-ESGSFLQAEADCTKAINLDKKV-RLI  534 (573)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~-~l~~~~~Al~~~~~al~l~p~~-~~~  534 (573)
                      ...+|+.+..+..+|..+.+.|++++|+..|+++++.+| ++.++..++.+.+ ..++..+|+..++++++++|++ ..+
T Consensus        33 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~  111 (176)
T 2r5s_A           33 SDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA  111 (176)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHH
Confidence            345677788888899999999999888888777777766 6555554443322 2223334566677777777766 366


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          535 CAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       535 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +.++.++...+++++|++.|++....+|..
T Consensus       112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          112 CELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            666777777777777777777777777653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.83  E-value=5.2e-09  Score=105.29  Aligned_cols=101  Identities=14%  Similarity=0.037  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH-
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER-  542 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~-  542 (573)
                      ..+.++|..+++.++|++|+..|+++|+++|++..+|+++|.+|+.+|+|++|+.+|+++++++|++. ++..++.+.. 
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999985 5555555533 


Q ss_pred             HHHHHHHHHHHHhhccccCCCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ..+..+++.+.|...+..+|...
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCC
Confidence            33667777888888888887543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.83  E-value=3.7e-08  Score=94.81  Aligned_cols=102  Identities=13%  Similarity=0.011  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQE  541 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~  541 (573)
                      .....+..+|..+++.|+|++|++.|+++++++|++..+|.++|.+|.++|++++|+..++++++++|++..........
T Consensus        75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A           75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999986433333444


Q ss_pred             HHHHHHHHHHHHHhhccccCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ...+.+++|++.|.......|.
T Consensus       155 ~~~~~~~~A~~~~~~~~~~~~~  176 (275)
T 1xnf_A          155 EQKLDEKQAKEVLKQHFEKSDK  176 (275)
T ss_dssp             HHHHCHHHHHHHHHHHHHHSCC
T ss_pred             HHhcCHHHHHHHHHHHHhcCCc
Confidence            5568899999999887776664

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.82  E-value=3e-08  Score=92.13  Aligned_cols=103  Identities=10%  Similarity=-0.111  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCcCc-HHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-GSFLQAEADCTKAIN--LDKKV-RLICA  536 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l-~~~~~Al~~~~~al~--l~p~~-~~~~~  536 (573)
                      |.....+..+|..+...|++++|++.|+++++.+|++..++.++|.+|..+ |++++|+..++++++  .+|.. ..++.
T Consensus        39 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  118 (225)
T 2vq2_A           39 PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN  118 (225)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence            344566777777777777777777777777777777777777777777777 777777777777777  34443 35666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          537 EAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       537 ~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ++.++...+.+++|++.|+...+..|.
T Consensus       119 l~~~~~~~~~~~~A~~~~~~~~~~~~~  145 (225)
T 2vq2_A          119 KGICSAKQGQFGLAEAYLKRSLAAQPQ  145 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            677777777777777777777766654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.82  E-value=3.6e-08  Score=92.98  Aligned_cols=100  Identities=13%  Similarity=0.098  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~  542 (573)
                      ...+..+|..+++.|++++|++.|+++++.+|++..++.++|.+|.+.|++++|+..++++++++|++. .++.++.++.
T Consensus       125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  204 (243)
T 2q7f_A          125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYA  204 (243)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            445566666666666666666666666666666666666666666666666666666666666666553 5555566666


Q ss_pred             HHHHHHHHHHHHhhccccCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ..+.+++|++.|++...++|.
T Consensus       205 ~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          205 YKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             HTTCTTHHHHHHHHHHHHCTT
T ss_pred             HccCHHHHHHHHHHHHccCcc
Confidence            666666666666666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.82  E-value=2.1e-08  Score=95.46  Aligned_cols=108  Identities=9%  Similarity=0.028  Sum_probs=99.3

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      ..+.....+..+|..+++.|++++|++.|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++. .+..+
T Consensus       136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  215 (252)
T 2ho1_A          136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG  215 (252)
T ss_dssp             TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999884 77778


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      +.++...+.+++|.+.|+......|...+
T Consensus       216 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  244 (252)
T 2ho1_A          216 IRLAKVFEDRDTAASYGLQLKRLYPGSLE  244 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence            88888899999999999999998886544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.81  E-value=3.7e-08  Score=83.32  Aligned_cols=81  Identities=19%  Similarity=0.136  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      .....+..+|..+++.|++++|++.|+++++++|++..+|+++|.+|.++|++++|+..++++++++|++ ..+..++.+
T Consensus        48 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  127 (133)
T 2lni_A           48 KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC  127 (133)
T ss_dssp             TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999999999999999987 455555655


Q ss_pred             HH
Q 008244          541 ER  542 (573)
Q Consensus       541 ~~  542 (573)
                      +.
T Consensus       128 ~~  129 (133)
T 2lni_A          128 MM  129 (133)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.81  E-value=4e-08  Score=82.56  Aligned_cols=84  Identities=18%  Similarity=0.080  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      .....+..+|..+++.|++++|++.|+++++.+|++..+|+++|.+|..+|++++|+..++++++++|++. ....++.+
T Consensus        44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  123 (131)
T 2vyi_A           44 ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA  123 (131)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999874 55566666


Q ss_pred             HHHHH
Q 008244          541 ERCLD  545 (573)
Q Consensus       541 ~~~~~  545 (573)
                      +..++
T Consensus       124 ~~~~~  128 (131)
T 2vyi_A          124 ELKLR  128 (131)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            55443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.81  E-value=2.4e-08  Score=94.19  Aligned_cols=100  Identities=12%  Similarity=0.044  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      ...+..+|..+.+.|++++|++.|+++++.+|++..++.++|.+|.++|++++|+..++++++++|++ ..++.++.++.
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  170 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA  170 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666655 35555566666


Q ss_pred             HHHHHHHHHHHHhhccccCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ..+.+++|++.|+...+..|.
T Consensus       171 ~~~~~~~A~~~~~~~~~~~~~  191 (243)
T 2q7f_A          171 NEGMLDEALSQFAAVTEQDPG  191 (243)
T ss_dssp             HHTCCHHHHHHHHHHHHHCTT
T ss_pred             HcCCHHHHHHHHHHHHHhCcc
Confidence            666666666666666555553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.80  E-value=2.5e-08  Score=101.84  Aligned_cols=100  Identities=17%  Similarity=0.079  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~  542 (573)
                      ...+..+|..+.+.|++++|++.|+++++++|++..+|.+++.+|.+.|++++|+..|+++++++|++. .++.++.++.
T Consensus       271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  350 (388)
T 1w3b_A          271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ  350 (388)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            444555555555555555555555555555555555555555555555555555555555555555542 4555555555


Q ss_pred             HHHHHHHHHHHHhhccccCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ..+.+++|++.|+++.+++|.
T Consensus       351 ~~g~~~~A~~~~~~a~~~~p~  371 (388)
T 1w3b_A          351 QQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             TTTCCHHHHHHHHHHHTTCTT
T ss_pred             HcCCHHHHHHHHHHHHhhCCC
Confidence            555556666666555555553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.80  E-value=1.6e-08  Score=103.23  Aligned_cols=103  Identities=21%  Similarity=0.178  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      +....+.++|..+++.|++++|++.|+++++++|+++.+|.++|.+|.++|++++|+..|+++++++|++. .+..++.+
T Consensus       235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  314 (388)
T 1w3b_A          235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI  314 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            55788999999999999999999999999999999999999999999999999999999999999999984 77888999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +...+.+++|++.|+++.+..|..
T Consensus       315 ~~~~g~~~~A~~~~~~al~~~p~~  338 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCc
Confidence            999999999999999999988864

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.80  E-value=7.6e-08  Score=82.20  Aligned_cols=69  Identities=22%  Similarity=0.125  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~  530 (573)
                      .....+.++|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|+
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           41 LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            557899999999999999999999999999999999999999999999999999999999999999988

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.80  E-value=4.7e-08  Score=96.72  Aligned_cols=105  Identities=12%  Similarity=0.125  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~---------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      |.....+..+|..+++.|++++|+..|++++++.         |....+|.++|.+|.++|++++|+..++++++++|++
T Consensus       190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  269 (330)
T 3hym_B          190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN  269 (330)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc
Confidence            3457889999999999999999999999999987         6778999999999999999999999999999999997


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          532 -RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       532 -~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                       ..++.++.++..++.+++|++.|+++.+++|...
T Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence             5888899999999999999999999999998643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.79  E-value=1.2e-07  Score=79.98  Aligned_cols=72  Identities=8%  Similarity=0.010  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +.....+..+|..+++.|+|++|+..|+++++.+|++   +.+++++|.||.++|++++|+..++++++.+|++.
T Consensus        36 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           36 VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD  110 (129)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence            3445789999999999999999999999999999999   89999999999999999999999999999999985

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.78  E-value=2.2e-08  Score=94.28  Aligned_cols=107  Identities=13%  Similarity=0.061  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHH
Q 008244          463 SAEIAKEKGNQAYK------------------DKQWLKAISFYTEAIKLNGNNATYY-----------------SNRAAA  507 (573)
Q Consensus       463 ~~~~~~~~g~~~~~------------------~~~~~~Ai~~y~~ai~~~p~~~~~~-----------------~n~a~~  507 (573)
                      ....++.+|..+++                  .|++++|+..|+++|+..|++..++                 ..+|.+
T Consensus        77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~  156 (225)
T 2yhc_A           77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEY  156 (225)
T ss_dssp             HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666654                  4677777777777777777765333                 566777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc
Q 008244          508 YLESGSFLQAEADCTKAINLDKKV----RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPF  569 (573)
Q Consensus       508 ~~~l~~~~~Al~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~  569 (573)
                      |++.|++++|+..|+++++..|++    .+++.++.++..++.+++|.+.|+......|...||++
T Consensus       157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~~  222 (225)
T 2yhc_A          157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHHH  222 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCTT
T ss_pred             HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhcc
Confidence            777888888888888888887775    36777778888788888888888877777776666553

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.77  E-value=1e-07  Score=78.44  Aligned_cols=78  Identities=15%  Similarity=0.111  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      .....+..+|..+++.|+|++|+..|+++++.+|++..+++++|.+|..+|++++|+..++++++++|++. .....+.
T Consensus        36 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  114 (118)
T 1elw_A           36 HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN  114 (118)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999985 4444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.77  E-value=4.4e-08  Score=95.72  Aligned_cols=103  Identities=18%  Similarity=0.072  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--------
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--------  532 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--------  532 (573)
                      |..+..+.++|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|++.        
T Consensus        35 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~  114 (281)
T 2c2l_A           35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP  114 (281)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHH
Confidence            356889999999999999999999999999999999999999999999999999999999999999998641        


Q ss_pred             HHHHHHHH----------------------HHHHHHHHHHHHHHhhccccCCC
Q 008244          533 LICAEAQQ----------------------ERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       533 ~~~~~~~~----------------------~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ....+++.                      ....+.+++|++.|+.+..++|.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~  167 (281)
T 2c2l_A          115 SALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED  167 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            11111110                      01246778888888888877774

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.77  E-value=1.6e-08  Score=97.39  Aligned_cols=102  Identities=17%  Similarity=0.080  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE  541 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~  541 (573)
                      .+..+..+|..+.+.|++++|++.|+++++++|++..+|.++|.+|..+|++++|+..++++++++|++. .++.++...
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  152 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY  152 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence            3667888999999999999999999999999999999999999999999999999999999999988874 666667344


Q ss_pred             HHHHHHHHHHHHHhhccccCCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ...+.+++|++.|+++.+++|..
T Consensus       153 ~~~~~~~~A~~~~~~a~~~~p~~  175 (272)
T 3u4t_A          153 YYNKEYVKADSSFVKVLELKPNI  175 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhCccc
Confidence            44558888888888888887753

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.77  E-value=1.3e-08  Score=84.61  Aligned_cols=83  Identities=8%  Similarity=-0.033  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       481 ~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                      ++|++.|+++++.+|+++.+|+++|.+|+.+|++++|+..|+++++++|++. .++.++.++..++.+++|.+.|+++..
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999999999999984 888899999999999999999999988


Q ss_pred             cCCC
Q 008244          560 WSPP  563 (573)
Q Consensus       560 ~~~~  563 (573)
                      +.|.
T Consensus        82 ~~~~   85 (115)
T 2kat_A           82 AAQS   85 (115)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            7764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=7.2e-08  Score=83.26  Aligned_cols=71  Identities=21%  Similarity=0.253  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      .....+.++|..+++.++|++|+..|+++++++|++..+|+++|.+|..++++++|+..++++++++|++.
T Consensus        63 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (148)
T 2dba_A           63 DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK  133 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            34888999999999999999999999999999999999999999999999999999999999999999985

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.76  E-value=7.2e-08  Score=95.21  Aligned_cols=102  Identities=12%  Similarity=0.082  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      .....+..+|..+++.|++++|++.|+++++.+|++..+|.++|.+|..+|++++|+..++++++++|++ ..++.++.+
T Consensus       170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999999999999999999999997 478888999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +..++.+++|++.|+++..+.|.
T Consensus       250 ~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          250 YSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccHHHHHHHHHHHHHhCCc
Confidence            99999999999999999988875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.76  E-value=2.6e-08  Score=97.64  Aligned_cols=103  Identities=15%  Similarity=0.099  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH------------------
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK------------------  523 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~------------------  523 (573)
                      .....+.++|..+.+.|++++|+..|+++++.+|+++.+++++|.+|..+|++++|+..+++                  
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999998887655554                  


Q ss_pred             ----------------HHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          524 ----------------AINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       524 ----------------al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                                      +++++|++ .+++.++.++...+++++|++.|....+.+|..
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence                            45566666 366777788888888888888888888888865

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.76  E-value=4.2e-08  Score=98.95  Aligned_cols=104  Identities=13%  Similarity=0.144  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      ...+.++|..+++.|+|++|+..|+++++.+|++..+|+++|.+|..+|++++|+..|+++++++|++ ..++.++.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999998 48888899999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPPIKEH  567 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~~~~  567 (573)
                      ..+.+++|++.|++...+.|...+.
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~  168 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHL  168 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGG
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHH
Confidence            9999999999999999998865443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.75  E-value=2.7e-08  Score=97.77  Aligned_cols=106  Identities=9%  Similarity=-0.063  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCc--
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKV--  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l-~~~~~Al~~~~~al~l~p~~--  531 (573)
                      +..+..+.+.|..+.+.|+|++|+.+|+++|++.+..      ..+|.++|.+|... |++++|+.+|++|+++.|+.  
T Consensus        74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~  153 (292)
T 1qqe_A           74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence            3457899999999999999999999999999998754      57999999999995 99999999999999998863  


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          532 -----RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       532 -----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                           ..+..++.++..++++++|+..|+++..+.|....
T Consensus       154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence                 35677889999999999999999999998886544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.75  E-value=6.9e-08  Score=91.84  Aligned_cols=103  Identities=15%  Similarity=0.096  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~--~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      .....+..+|..+++.|++++|++.|+++++  ..|.+..++.++|.+|.++|++++|+..++++++++|++ ..++.++
T Consensus       103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la  182 (252)
T 2ho1_A          103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA  182 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            4477889999999999999999999999999  889999999999999999999999999999999999997 4788889


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .++..++.+++|++.|+...+..|..
T Consensus       183 ~~~~~~g~~~~A~~~~~~~~~~~~~~  208 (252)
T 2ho1_A          183 DLLYKEREYVPARQYYDLFAQGGGQN  208 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            99999999999999999999888753

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.74  E-value=3.8e-08  Score=94.73  Aligned_cols=102  Identities=9%  Similarity=-0.048  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICA  536 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~  536 (573)
                      .....+..+|..+++.|+|++|++.|+++++ .|.+    ..+|.++|.+|..+|++++|+..|+++++++|++ ..+..
T Consensus        35 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  113 (272)
T 3u4t_A           35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ  113 (272)
T ss_dssp             CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Confidence            3455789999999999999999999999999 4443    5569999999999999999999999999999998 58888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          537 EAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       537 ~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ++.++..++.+++|++.|+++..++|..
T Consensus       114 l~~~~~~~~~~~~A~~~~~~al~~~~~~  141 (272)
T 3u4t_A          114 IGSYFYNKGNFPLAIQYMEKQIRPTTTD  141 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred             HHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence            9999999999999999999999998754

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.72  E-value=9.5e-08  Score=88.68  Aligned_cols=102  Identities=15%  Similarity=0.071  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHH
Q 008244          461 KQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICA  536 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~-~~~~~Ai~~y~~ai~--~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~  536 (573)
                      +.....+..+|..+++. |++++|+..|+++++  ..|.+..+|.++|.+|..+|++++|+..++++++++|++ ..++.
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  152 (225)
T 2vq2_A           73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE  152 (225)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH
Confidence            34567888999999999 999999999999999  667778999999999999999999999999999999987 47788


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          537 EAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       537 ~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      ++.++...+.+++|++.|+......|
T Consensus       153 la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          153 LARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            88999999999999999999888777

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.71  E-value=1.1e-07  Score=94.00  Aligned_cols=104  Identities=13%  Similarity=-0.054  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      |.....+..+|..+.+.|++++|+..|+++++..|++...+.++|.+|..+|++++|+..++++++++|++ ..++.++.
T Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~  201 (330)
T 3hym_B          122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV  201 (330)
T ss_dssp             TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            34456677777777777777777777777777777777777777777777777777777777777777776 36666777


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ++...+.+++|++.|+++..+.+..
T Consensus       202 ~~~~~~~~~~A~~~~~~a~~~~~~~  226 (330)
T 3hym_B          202 VAFQNGEWKTAEKWFLDALEKIKAI  226 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHcccHHHHHHHHHHHHHHhhhc
Confidence            7777777777777777777765543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.71  E-value=7.1e-08  Score=94.75  Aligned_cols=93  Identities=12%  Similarity=0.044  Sum_probs=80.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHH-
Q 008244          472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRR-  549 (573)
Q Consensus       472 ~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~-  549 (573)
                      +.+...|++++|+..|+++++.+|+++.+|+++|.||.++|++++|+..++++++++|++. +++.++.+...++...+ 
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea  253 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV  253 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence            3344568999999999999999999999999999999999999999999999999999985 78888888888888765 


Q ss_pred             HHHHHhhccccCCCC
Q 008244          550 QLKIFHMHWSWSPPI  564 (573)
Q Consensus       550 al~~~~~~~~~~~~~  564 (573)
                      +.+.+++..+++|..
T Consensus       254 a~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          254 TNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            567888888888853

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.70  E-value=2.4e-07  Score=76.94  Aligned_cols=81  Identities=28%  Similarity=0.382  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~  540 (573)
                      .....+...|..+++.|++++|+..|+++++.+|++...+.++|.+|..+|++++|+..++++++++|++. ....++.+
T Consensus        41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  120 (125)
T 1na0_A           41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA  120 (125)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            44678899999999999999999999999999999999999999999999999999999999999999984 55555554


Q ss_pred             HH
Q 008244          541 ER  542 (573)
Q Consensus       541 ~~  542 (573)
                      +.
T Consensus       121 ~~  122 (125)
T 1na0_A          121 KQ  122 (125)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.70  E-value=9e-08  Score=94.50  Aligned_cols=106  Identities=14%  Similarity=-0.008  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      .....+..+|..+++.|+|++|+..|+++++.+|++..+|.++|.+|..+|++++|+..++++++++|++ ..++.++.+
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence            4567789999999999999999999999999999999999999999999999999999999999999988 478888999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPIKEH  567 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~~~~  567 (573)
                      +...+.+++|++.|++.....|...+.
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~  125 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQL  125 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence            999999999999999999988865543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.68  E-value=1.5e-07  Score=78.99  Aligned_cols=84  Identities=14%  Similarity=0.222  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLI  534 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~  534 (573)
                      .....+..+|..+++.|+|++|+..|+++++..|++       ..+|+++|.+|..+|++++|+..++++++++|+....
T Consensus        36 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  115 (131)
T 1elr_A           36 TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL  115 (131)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHH
Confidence            457889999999999999999999999999999887       9999999999999999999999999999999975555


Q ss_pred             HHHHHHHHHHH
Q 008244          535 CAEAQQERCLD  545 (573)
Q Consensus       535 ~~~~~~~~~~~  545 (573)
                      ...+.+...++
T Consensus       116 ~~l~~~~~~~~  126 (131)
T 1elr_A          116 KKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555554443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.66  E-value=2.8e-07  Score=75.23  Aligned_cols=69  Identities=19%  Similarity=0.206  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +...+.+|..++++++|.+|+..|++|++..       .....++.++|.||+++|++++|+..++++++++|++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            5678899999999999999999999999874       34589999999999999999999999999999999985

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.62  E-value=3.2e-07  Score=91.61  Aligned_cols=98  Identities=15%  Similarity=0.133  Sum_probs=91.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHH
Q 008244          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDI  546 (573)
Q Consensus       468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~  546 (573)
                      ..+|..+++.|++++|++.|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++. .++.++.++...+.
T Consensus       124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  203 (359)
T 3ieg_A          124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD  203 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            34489999999999999999999999999999999999999999999999999999999999984 88888999999999


Q ss_pred             HHHHHHHHhhccccCCCCC
Q 008244          547 TRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       547 ~~~al~~~~~~~~~~~~~~  565 (573)
                      +++|++.|+.+.+..|...
T Consensus       204 ~~~A~~~~~~a~~~~~~~~  222 (359)
T 3ieg_A          204 HELSLSEVRECLKLDQDHK  222 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhhCccch
Confidence            9999999999999888643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.61  E-value=1.7e-07  Score=76.33  Aligned_cols=70  Identities=19%  Similarity=0.212  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCc
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~--~~~~~~n~a~~~~~l-~~~~~Al~~~~~al~l~p~~  531 (573)
                      .....+..+|..+++.|+|++|++.|+++++++|+  +..+|.++|.+|.++ |++++|++.++++++.+|..
T Consensus        38 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           38 EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            34678899999999999999999999999999999  999999999999999 99999999999999999864

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.61  E-value=1.9e-07  Score=91.40  Aligned_cols=98  Identities=8%  Similarity=-0.064  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEA  538 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~  538 (573)
                      +....+...+..+.+.+++++|+..|+++++.+|++..+++++|.+|...|++++|+..|+++++++|++   .++..++
T Consensus       183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~  262 (287)
T 3qou_A          183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ  262 (287)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence            3455566677777888888888999999999999999999999999999999999999999999999997   3788889


Q ss_pred             HHHHHHHHHHHHHHHHhhccc
Q 008244          539 QQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~  559 (573)
                      .++..++..+++...|.+++.
T Consensus       263 ~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          263 EILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCcHHHHHHHHHH
Confidence            999999988889888887653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.60  E-value=3.5e-07  Score=94.97  Aligned_cols=103  Identities=12%  Similarity=0.006  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH----H---
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR----L---  533 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~----~---  533 (573)
                      |..+..+..+|..+++.|++++|+..|+++++.+|++..+|.++|.+|.++|++++|+..|+++++++|++.    .   
T Consensus        57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  136 (450)
T 2y4t_A           57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ  136 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            356889999999999999999999999999999999999999999999999999999999999999999864    2   


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          534 ---------ICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       534 ---------~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                               .+.++..+...+.+++|++.|+......|.
T Consensus       137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  175 (450)
T 2y4t_A          137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW  175 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence                     233466677778999999999998888775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.59  E-value=2.8e-07  Score=99.10  Aligned_cols=104  Identities=7%  Similarity=0.014  Sum_probs=96.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Q 008244          460 QKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAEADCTKAINL  527 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~----------~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~--~~~~Al~~~~~al~l  527 (573)
                      +|+....|..++..+.+.++          |++|++.|+++|+.+|++..+|++|+.++.+++  ++++++++|++++++
T Consensus        59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~  138 (567)
T 1dce_A           59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence            56889999999999999988          999999999999999999999999999999999  779999999999999


Q ss_pred             CcCc-HHHHHHHHHHHHHH-HHHHHHHHHhhccccCCC
Q 008244          528 DKKV-RLICAEAQQERCLD-ITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       528 ~p~~-~~~~~~~~~~~~~~-~~~~al~~~~~~~~~~~~  563 (573)
                      ||++ .++..++.+...++ .++++++.+++....+|.
T Consensus       139 d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~  176 (567)
T 1dce_A          139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence            9998 48888888888888 899999999999998875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.59  E-value=4.2e-07  Score=97.69  Aligned_cols=122  Identities=9%  Similarity=0.004  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008244          434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES  511 (573)
Q Consensus       434 a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l  511 (573)
                      ...+++.+..........+         +....|..++..+.+.+  +|++|++.|+++|+++|.+..+|++|+.++.++
T Consensus        86 ~~~~~~eL~~~~~~l~~~p---------K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l  156 (567)
T 1dce_A           86 AALVKAELGFLESCLRVNP---------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA  156 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence            3446666666666655444         88999999999999999  779999999999999999999999999999999


Q ss_pred             C-CHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH--------------HHHHHHHHHHhhccccCCCC
Q 008244          512 G-SFLQAEADCTKAINLDKKVR-LICAEAQQERCL--------------DITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       512 ~-~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~--------------~~~~~al~~~~~~~~~~~~~  564 (573)
                      + .+++++++++++++++|++. ++..++.+...+              +.++++++.++++..++|..
T Consensus       157 ~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~  225 (567)
T 1dce_A          157 AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND  225 (567)
T ss_dssp             CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence            9 99999999999999999985 777888777764              88999999999999999853

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.58  E-value=1.5e-07  Score=98.60  Aligned_cols=105  Identities=17%  Similarity=0.093  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~---------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-  531 (573)
                      ..+..+..+|.+++.+|+|++|+++|++|+++         +|.....|.|+|.+|..+|++++|+.++++++++.+.. 
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34677888999999999999999999999987         57778999999999999999999999999999986532 


Q ss_pred             --------HHHHHHHHHHHH--HHHHHHHHHHHhhccccCCCCCC
Q 008244          532 --------RLICAEAQQERC--LDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       532 --------~~~~~~~~~~~~--~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                              ..+..++.....  .+.+++|++.|+++..++|...+
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~  173 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE  173 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence                    245555544443  36899999999999999986543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.57  E-value=4.3e-07  Score=89.02  Aligned_cols=99  Identities=15%  Similarity=0.141  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI---KLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKK----  530 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai---~~~p~~~----~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~----  530 (573)
                      ..+..+.+.|..++..|+|++|+..|++++   +..+++.    .+|+|+|.+|.++|+|++|+..+++++++.++    
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence            457889999999999999999999999999   4556643    79999999999999999999999999998754    


Q ss_pred             ---cHHHHHHHHHHHHHHHHHHH-HHHHhhcccc
Q 008244          531 ---VRLICAEAQQERCLDITRRQ-LKIFHMHWSW  560 (573)
Q Consensus       531 ---~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~  560 (573)
                         ...++.+|.++..++.+++| ...|+++..+
T Consensus       233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence               24778889999988888888 6667776654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.57  E-value=1.4e-07  Score=93.33  Aligned_cols=102  Identities=16%  Similarity=0.110  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----  531 (573)
                      ..+..+.++|..+.+ |+|++|+++|++++++.+..      ..+|.++|.+|.++|+|++|+..|++++++.|++    
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  192 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP  192 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence            457888999999988 99999999999999998754      6889999999999999999999999999997653    


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          532 ---RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       532 ---~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                         ..++.++.++..++.+++|++.|+++. +.|...
T Consensus       193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence               256667788888899999999999999 888544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.56  E-value=2.4e-07  Score=98.58  Aligned_cols=105  Identities=13%  Similarity=0.052  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      +.+..+..+|..+.+.|+|++|++.|+++++++|++..+|.++|.+|..+|++++|+..++++++++|++ ..++.++.+
T Consensus       308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  387 (537)
T 3fp2_A          308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI  387 (537)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            4577889999999999999999999999999999999999999999999999999999999999999987 477888899


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          541 ERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      +...+.+++|++.|+++..+.|...+
T Consensus       388 ~~~~g~~~~A~~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          388 LTDRGDFDTAIKQYDIAKRLEEVQEK  413 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhCCHHHHHHHHHHHHHcCCcchh
Confidence            98899999999999998887765433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.55  E-value=4e-07  Score=89.35  Aligned_cols=105  Identities=9%  Similarity=-0.122  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA--AAYLESGSFLQAEADCTKAINLDKKVR-LICAEA  538 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a--~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~  538 (573)
                      .....+..+|..+.+.|++++|++.|+++++.+|++.......+  ..+...|++++|+..|+++++.+|++. .++.++
T Consensus       128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la  207 (291)
T 3mkr_A          128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA  207 (291)
T ss_dssp             CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            55778999999999999999999999999999999864433333  222334899999999999999999985 778899


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      .++..++++++|.+.|+++...+|...+
T Consensus       208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~  235 (291)
T 3mkr_A          208 ACHMAQGRWEAAEGVLQEALDKDSGHPE  235 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999986543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.55  E-value=3.9e-07  Score=98.42  Aligned_cols=104  Identities=19%  Similarity=0.161  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RL  533 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~------~p~~-~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~  533 (573)
                      ..+..+..+|..+.+.|++++|++.|++++++      +|++ ..+|.+++.+|.+.|++++|++.++++++++|++ ..
T Consensus       473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  552 (597)
T 2xpi_A          473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV  552 (597)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence            34677888999999999999999999999888      5554 7889999999999999999999999999999877 47


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +..++.++...+.+++|.+.|+++.+++|...
T Consensus       553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  584 (597)
T 2xpi_A          553 HTAIALVYLHKKIPGLAITHLHESLAISPNEI  584 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence            77888888888999999999999988888644

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.54  E-value=3.7e-07  Score=82.10  Aligned_cols=84  Identities=8%  Similarity=-0.031  Sum_probs=74.7

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHHHHHHHHH
Q 008244          476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEAQQERCLDITRRQLK  552 (573)
Q Consensus       476 ~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~al~  552 (573)
                      +.++..+|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++   .++..++.++..++..+++..
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            33444568999999999999999999999999999999999999999999999985   378888999999999999999


Q ss_pred             HHhhccc
Q 008244          553 IFHMHWS  559 (573)
Q Consensus       553 ~~~~~~~  559 (573)
                      .|.+++.
T Consensus       166 ~y~~al~  172 (176)
T 2r5s_A          166 KYRRQLY  172 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.54  E-value=6.3e-07  Score=88.57  Aligned_cols=102  Identities=13%  Similarity=0.050  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYK-------DKQW-------LKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~-------~~~~-------~~Ai~~y~~ai~-~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~  526 (573)
                      ..+..|.+.|..+.+       .|++       ++|+..|++||+ ++|++..+|.+++.++.++|++++|...|+++++
T Consensus        48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  127 (308)
T 2ond_A           48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA  127 (308)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            456677777766653       4664       778888888887 6788888888888888888888888888888888


Q ss_pred             hCcCcH--HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          527 LDKKVR--LICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       527 l~p~~~--~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ++|++.  .+...+..+...+.+++|.+.|+++.+.+|.
T Consensus       128 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~  166 (308)
T 2ond_A          128 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence            877752  5666777777777777788888777777664

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.53  E-value=2e-07  Score=89.58  Aligned_cols=102  Identities=13%  Similarity=0.056  Sum_probs=91.6

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---  527 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l---  527 (573)
                      ..+..+..+.++|..+...|+|++|++.|.+++++        +|....+|.++|.+|..+|++++|+..+++++++   
T Consensus        80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  159 (283)
T 3edt_B           80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT  159 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34677889999999999999999999999999998        4667899999999999999999999999999999   


Q ss_pred             -----CcCc-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          528 -----DKKV-RLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       528 -----~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                           +|.. ..+..++.++..++.+++|++.|+.+..+
T Consensus       160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 5554 47788899999999999999999988875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.53  E-value=3.2e-07  Score=88.20  Aligned_cols=101  Identities=14%  Similarity=0.153  Sum_probs=90.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL----  527 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l----  527 (573)
                      .+..+..+..+|..++..|+|++|+..|++++++.        |....++.++|.+|..+|++++|+..|++++++    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999884        556889999999999999999999999999998    


Q ss_pred             ----CcCc-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          528 ----DKKV-RLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       528 ----~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                          +|.. ..+..++.++..++.+++|++.|+++..+
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                3444 47788899999999999999999988876

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.52  E-value=2.5e-07  Score=90.79  Aligned_cols=101  Identities=15%  Similarity=0.114  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---  531 (573)
                      ..+..+.++|..+...|+|++|+.+|+++++..       +....+|+|+|.+|.++|+|++|+..+++++++.++.   
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~  232 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence            457789999999999999999999999999632       2235799999999999999999999999999987553   


Q ss_pred             ----HHHHHHHHHHHHHH-HHHHHHHHHhhccccCC
Q 008244          532 ----RLICAEAQQERCLD-ITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~-~~~~al~~~~~~~~~~~  562 (573)
                          ..++.+|.++..++ .+++|++.|+++..+..
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence                47888899998888 46899999988876544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.52  E-value=3.4e-07  Score=79.76  Aligned_cols=103  Identities=13%  Similarity=0.082  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---  531 (573)
                      ...+..+..+|..++..|+|++|++.|++++++.+..      ..++.++|.+|..+|++++|+..+++++++.+..   
T Consensus        46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  125 (164)
T 3ro3_A           46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR  125 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence            3446788999999999999999999999999986543      6789999999999999999999999999885432   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                          ..+..++.++..++.+++|.+.|+++.++...
T Consensus       126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                36777888888899999999999988876543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.51  E-value=3.4e-07  Score=72.90  Aligned_cols=72  Identities=15%  Similarity=0.038  Sum_probs=66.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          460 QKQSAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~---~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      +|++++.+...|..++..++   ..+|...++++|+++|+++.+++.+|..+++.|+|++|+..++++++.+|..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            45678999999999976655   7999999999999999999999999999999999999999999999999984

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.50  E-value=7.1e-07  Score=88.19  Aligned_cols=101  Identities=12%  Similarity=0.043  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ  539 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~-~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~  539 (573)
                      +....|.+.|..+.+.|++++|+..|+++|+++|+++. +|.+++.++.+.|++++|+..|++|++++|.. ..+...+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~  176 (308)
T 2ond_A           97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL  176 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            44556666777777777777777777777777776665 67777776666666666666666666666554 22222222


Q ss_pred             HHHH-HHHHHHHHHHHhhccccCC
Q 008244          540 QERC-LDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       540 ~~~~-~~~~~~al~~~~~~~~~~~  562 (573)
                      .... .+.+++|.+.|+++.+..|
T Consensus       177 ~~~~~~~~~~~A~~~~~~al~~~p  200 (308)
T 2ond_A          177 MEYYCSKDKSVAFKIFELGLKKYG  200 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC
Confidence            2211 2445555555555554444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.49  E-value=3e-06  Score=83.87  Aligned_cols=104  Identities=9%  Similarity=0.033  Sum_probs=94.7

Q ss_pred             ChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcH-HHH
Q 008244          460 QKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKVR-LIC  535 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~--~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~p~~~-~~~  535 (573)
                      +|+....|..++..+.+.+  ++++++++++++|+++|.|..+|++|+.++..++. +++++++++++++++|.+. +..
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~  183 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  183 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            3488999999999999988  49999999999999999999999999999999999 6999999999999999985 777


Q ss_pred             HHHHHHHHH--------------HHHHHHHHHHhhccccCCC
Q 008244          536 AEAQQERCL--------------DITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       536 ~~~~~~~~~--------------~~~~~al~~~~~~~~~~~~  563 (573)
                      .++.+...+              +.++++++.++.+...+|.
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~  225 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN  225 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC
Confidence            777777666              7899999999999998885

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.49  E-value=1.7e-07  Score=75.85  Aligned_cols=71  Identities=11%  Similarity=-0.025  Sum_probs=64.0

Q ss_pred             hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       493 ~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .+|+++.+|+++|.+|+++|+|++|+..|+++++++|++ .+++.++.++..++.+++|++.|+++..+.|.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            479999999999999999999999999999999999998 58899999999999999999999999887653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.48  E-value=6.5e-07  Score=88.05  Aligned_cols=104  Identities=10%  Similarity=-0.058  Sum_probs=91.8

Q ss_pred             ChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCcC
Q 008244          460 QKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAY----LES---GSFLQAEADCTKAINLDKK  530 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~--~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~----~~l---~~~~~Al~~~~~al~l~p~  530 (573)
                      +|+....|+.++..+...+  +++++++.++++|+.+|++..+|+.|+.++    .++   +++++++..|+++++++|+
T Consensus        63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk  142 (306)
T 3dra_A           63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK  142 (306)
T ss_dssp             CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred             CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence            3478999999999999998  999999999999999999999999999999    777   7899999999999999999


Q ss_pred             cH-HHHHHHHHHHHHHHHH--HHHHHHhhccccCCC
Q 008244          531 VR-LICAEAQQERCLDITR--RQLKIFHMHWSWSPP  563 (573)
Q Consensus       531 ~~-~~~~~~~~~~~~~~~~--~al~~~~~~~~~~~~  563 (573)
                      +. +...++-+...++.++  ++++.+++....+|.
T Consensus       143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~  178 (306)
T 3dra_A          143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK  178 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence            84 7788888777777777  888888888877763

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.48  E-value=1.2e-06  Score=94.51  Aligned_cols=99  Identities=12%  Similarity=-0.016  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      ...+..+|..+.+.|++++|++.|+++++++|++..+|++++.+|.+.|++++|++.|+++++++|++ ..+..++..+.
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  452 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM  452 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            34444444455555555555555555555545444445555555555555555555555554444443 23334444444


Q ss_pred             HHHHHHHHHHHHhhccccCC
Q 008244          543 CLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~  562 (573)
                      ..+.+++|++.|++.....|
T Consensus       453 ~~g~~~~A~~~~~~~~~~~~  472 (597)
T 2xpi_A          453 QLGNILLANEYLQSSYALFQ  472 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHHCC
T ss_pred             HcCCHHHHHHHHHHHHHhCC
Confidence            44444444444444444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.47  E-value=2.2e-06  Score=76.73  Aligned_cols=71  Identities=18%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          462 QSAEIAKEKGNQ-AYKDKQW--LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       462 ~~~~~~~~~g~~-~~~~~~~--~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      .....+..+|.. +++.|++  ++|+..|+++++++|++..+|+++|.+|+.+|++++|+..++++++++|++.
T Consensus        76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A           76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            347788999999 7899999  9999999999999999999999999999999999999999999999999873

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.44  E-value=1.1e-06  Score=86.39  Aligned_cols=103  Identities=10%  Similarity=-0.063  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCcCc
Q 008244          461 KQSAEIAKEKGNQA----YKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--QAEADCTKAINLDKKV  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~----~~~---~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~--~Al~~~~~al~l~p~~  531 (573)
                      |+....|..++..+    .+.   ++++++++.++++|+.+|.+..+|++|+.++.++++++  ++++.+++++++||.|
T Consensus       100 Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N  179 (306)
T 3dra_A          100 EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN  179 (306)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC
T ss_pred             cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC
Confidence            47788999999888    666   78999999999999999999999999999999999998  9999999999999988


Q ss_pred             H-HHHHHHHHHHHHHH------HHHHHHHHhhccccCCC
Q 008244          532 R-LICAEAQQERCLDI------TRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       532 ~-~~~~~~~~~~~~~~------~~~al~~~~~~~~~~~~  563 (573)
                      . +...++.+...++.      ++++++.++.+...+|.
T Consensus       180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~  218 (306)
T 3dra_A          180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ  218 (306)
T ss_dssp             HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC
Confidence            4 77777777776655      89999999988888874

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.43  E-value=4e-07  Score=79.29  Aligned_cols=102  Identities=16%  Similarity=0.155  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---  531 (573)
                      ...+..+..+|..++..|+|++|+..|++++++.+..      ..++.++|.+|..+|++++|+..+++++++.++.   
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            4567889999999999999999999999999986542      3689999999999999999999999999986542   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                          ..++.++.++...+.+++|++.|+++..+.+
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                3677788888888999999999988876543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.43  E-value=1.1e-06  Score=84.81  Aligned_cols=130  Identities=16%  Similarity=0.071  Sum_probs=97.9

Q ss_pred             cCCcHHHHHHHHHHHHHHHHH-HHhhhhcCCCCCCccChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCH
Q 008244          424 HGGDRFLLDTVQNMYASLQEQ-ADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNA  498 (573)
Q Consensus       424 ~~~d~~ll~~a~~le~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~~  498 (573)
                      +++...++.++..+.....-. +.........      +..+..+.++|..+.+    .+++++|+..|+++++.+  ++
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~   74 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS   74 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH
Confidence            344455666666655432222 2222222211      3446788899999999    999999999999999885  89


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH----HHHHHHHHHHHhhccccCC
Q 008244          499 TYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVRLICAEAQQERC----LDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       499 ~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~----~~~~~~al~~~~~~~~~~~  562 (573)
                      .+++++|.+|..    .+++++|+..|+++++++ +..+++.++.++..    .+.+++|++.|+++....+
T Consensus        75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~  145 (273)
T 1ouv_A           75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND  145 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence            999999999999    999999999999999985 34588888988888    8999999999999887654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.42  E-value=8e-07  Score=91.10  Aligned_cols=102  Identities=12%  Similarity=0.124  Sum_probs=90.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Cc
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DK  529 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~----~~~~n~a~~~~~l~~~~~Al~~~~~al~l------~p  529 (573)
                      ++..+..+..+|..+++.|+|++|+..|+++++++|++.    .+|+++|.+|..+|++++|+..|++++++      +|
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            467788899999999999999999999999999999986    68999999999999999999999999998      34


Q ss_pred             Cc-HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244          530 KV-RLICAEAQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       530 ~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                      .. ..++.++.++..++.+++|++.|+++..+.
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            33 477888899998999999999999887663

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.41  E-value=5.7e-07  Score=87.92  Aligned_cols=103  Identities=16%  Similarity=0.120  Sum_probs=91.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD---  528 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~---  528 (573)
                      .+.....+..+|..+++.|++++|++.|++++++        .|....++.++|.+|..+|++++|+..+++++++.   
T Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  228 (311)
T 3nf1_A          149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER  228 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            4577889999999999999999999999999998        66778999999999999999999999999999863   


Q ss_pred             ----------------------------------------------cCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244          529 ----------------------------------------------KKV-RLICAEAQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       529 ----------------------------------------------p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                                                                    |.. ..++.++.++..++.+++|++.|+++.++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence                                                          322 367788999999999999999999998876


Q ss_pred             C
Q 008244          562 P  562 (573)
Q Consensus       562 ~  562 (573)
                      |
T Consensus       309 ~  309 (311)
T 3nf1_A          309 K  309 (311)
T ss_dssp             C
T ss_pred             h
Confidence            5

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.41  E-value=8e-07  Score=93.00  Aligned_cols=106  Identities=10%  Similarity=0.002  Sum_probs=86.5

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhC
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESG--SFLQAEADCTKAINLD  528 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--------p~~~~~~~n~a~~~~~l~--~~~~Al~~~~~al~l~  528 (573)
                      .++..+..+.++|.+|+..|+|++|+..|++++++.        +..+..+.++|.++.+++  +|++|+.+|++|++++
T Consensus        89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~  168 (472)
T 4g1t_A           89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK  168 (472)
T ss_dssp             CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence            345668889999999999999999999999999874        356899999999998865  6999999999999999


Q ss_pred             cCcH-HHHHHHHHHHHH---HHHHHHHHHHhhccccCCCC
Q 008244          529 KKVR-LICAEAQQERCL---DITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       529 p~~~-~~~~~~~~~~~~---~~~~~al~~~~~~~~~~~~~  564 (573)
                      |++. .+..++.+...+   +..+++++.|.++.+++|..
T Consensus       169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~  208 (472)
T 4g1t_A          169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN  208 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred             CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence            9985 555666555444   34467888888888888754

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.41  E-value=1.8e-06  Score=85.90  Aligned_cols=104  Identities=6%  Similarity=-0.145  Sum_probs=93.8

Q ss_pred             ChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCcCcH-HHH
Q 008244          460 QKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-G-SFLQAEADCTKAINLDKKVR-LIC  535 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~-~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l-~-~~~~Al~~~~~al~l~p~~~-~~~  535 (573)
                      +|+....|..++..+...+ +++++++.++++|+.+|++..+|+.|+.++.++ + +++++++.++++++++|++. +..
T Consensus        84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~  163 (349)
T 3q7a_A           84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA  163 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence            4588999999999999999 599999999999999999999999999999998 8 99999999999999999984 777


Q ss_pred             HHHHHHHHHHHHH--------HHHHHHhhccccCCC
Q 008244          536 AEAQQERCLDITR--------RQLKIFHMHWSWSPP  563 (573)
Q Consensus       536 ~~~~~~~~~~~~~--------~al~~~~~~~~~~~~  563 (573)
                      .++-+...++.++        ++++.+++....+|.
T Consensus       164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~  199 (349)
T 3q7a_A          164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR  199 (349)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence            8887777777776        899998888887763

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.40  E-value=4.1e-07  Score=87.67  Aligned_cols=104  Identities=14%  Similarity=0.050  Sum_probs=91.3

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC-c-H
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLD--KK-V-R  532 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~--~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~--p~-~-~  532 (573)
                      ..|... .++.+|..+++.++|++|+..|+++++..+..  ..+++++|.++..+|++++|+..|++++..+  |. . .
T Consensus       131 ~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~d  209 (282)
T 4f3v_A          131 AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARA  209 (282)
T ss_dssp             TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHH
T ss_pred             cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHH
Confidence            445667 88999999999999999999999887764222  4689999999999999999999999999665  66 3 4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          533 LICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       533 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +.+.++.++..+++.++|...|++....+|.
T Consensus       210 a~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          210 IAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            8899999999999999999999999999986

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.39  E-value=1.1e-06  Score=80.14  Aligned_cols=104  Identities=10%  Similarity=0.027  Sum_probs=86.1

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~---~p~----~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      ..+..+..+.++|..+...|+|++|++.|++++++   .++    ...+++++|.+|..+|++++|+..+++++++.+..
T Consensus        61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  140 (203)
T 3gw4_A           61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA  140 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence            34567888999999999999999999999999988   442    35789999999999999999999999999875332


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          532 -------RLICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       532 -------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                             ..+..++.++...+++++|.+.|+++..+..
T Consensus       141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence                   2456778888888999999999888776543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.39  E-value=7e-07  Score=94.19  Aligned_cols=104  Identities=16%  Similarity=0.150  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcCcH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT------YYSNRAAAYLE---SGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~------~~~n~a~~~~~---l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      .....+..+|..+++.|++++|+..|+++++.+|++..      +|+++|.+|..   +|++++|+..|+++++++|++.
T Consensus       370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  449 (514)
T 2gw1_A          370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE  449 (514)
T ss_dssp             TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence            34567888999999999999999999999999888754      99999999999   9999999999999999999874


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          533 -LICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       533 -~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                       .++.++.++...+.+++|++.|+++..++|...
T Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  483 (514)
T 2gw1_A          450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTME  483 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence             778888999989999999999999998888543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.39  E-value=7.8e-07  Score=90.65  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=88.5

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      ..+..+..+..+|..++..|++++|+..|++|+++.+.       ...++.++|.+|..+|+|++|+..+++|+++.++.
T Consensus       138 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  217 (383)
T 3ulq_A          138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE  217 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence            34567889999999999999999999999999998543       35789999999999999999999999999986543


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          532 -------RLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       532 -------~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                             ..+..+|.++..++.+++|++.|+++..+
T Consensus       218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                   37788899999999999999999988874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.38  E-value=3.2e-06  Score=72.85  Aligned_cols=70  Identities=13%  Similarity=0.037  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          463 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~---~~~~Ai~~y~~ai~~~-p-~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      ..+..++.|..+.+.+   +++++|..+++.++.+ | ++.+++|++|..|+++++|++|+++++++|+++|++.
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~  105 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  105 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            4788999999999988   7789999999999998 7 5789999999999999999999999999999999985

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.36  E-value=1.3e-06  Score=85.28  Aligned_cols=108  Identities=10%  Similarity=0.024  Sum_probs=93.8

Q ss_pred             CCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (573)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a  524 (573)
                      ......++|..+..+..+|..++..|+|++|+..|++++++        .|....++.++|.+|..+|++++|+..++++
T Consensus        16 ~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a   95 (311)
T 3nf1_A           16 FQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA   95 (311)
T ss_dssp             CSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34455667889999999999999999999999999999995        5667899999999999999999999999999


Q ss_pred             HHhC--------cCc-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          525 INLD--------KKV-RLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       525 l~l~--------p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                      +++.        |.. ..+..++.++..++.+++|++.|+++..+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  140 (311)
T 3nf1_A           96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  140 (311)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            9983        333 47778888888889999999999988765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.35  E-value=1.2e-06  Score=80.00  Aligned_cols=100  Identities=6%  Similarity=-0.098  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCc-
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---DKKV-  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l---~p~~-  531 (573)
                      ..+..+..+|..++..|+|++|+..|++++++      .+....++.++|.+|..+|++++|+..+++++++   .++. 
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            56889999999999999999999999999994      4456789999999999999999999999999998   3422 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244          532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                          ..++.++.++..++.+++|++.|+.+..+.
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence                367778888988999999999999887653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.35  E-value=4.5e-07  Score=89.59  Aligned_cols=102  Identities=10%  Similarity=-0.047  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---  531 (573)
                      ...+..+.+.|..+.+.|+|++|+.+|++++++.+.      ...+|.++|.+|.. |++++|+.+|++|+++.|..   
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            355788999999999999999999999999998543      25789999999999 99999999999999998753   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                          ..+...+.++..++++++|++.|+++..+.+.
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                36777889999999999999999999887553

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.34  E-value=2.1e-06  Score=82.76  Aligned_cols=97  Identities=18%  Similarity=0.152  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHH
Q 008244          463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVRLI  534 (573)
Q Consensus       463 ~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~~~  534 (573)
                      .+..+.++|..+.+    .+++++|++.|+++++.+  ++.+++++|.+|..    .+++++|+..|+++++++ +..++
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~  149 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGC  149 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHH
Confidence            46778889999999    999999999999999884  89999999999999    999999999999999987 33577


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHhhccccCC
Q 008244          535 CAEAQQERC----LDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       535 ~~~~~~~~~----~~~~~~al~~~~~~~~~~~  562 (573)
                      +.++.++..    .+.+++|++.|+++.+..+
T Consensus       150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~  181 (273)
T 1ouv_A          150 TILGSLYDAGRGTPKDLKKALASYDKACDLKD  181 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            778888887    7899999999998887643

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.31  E-value=5.8e-06  Score=80.87  Aligned_cols=101  Identities=10%  Similarity=-0.068  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCc-
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAIN---LDKKV-  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~---l~p~~-  531 (573)
                      .....+...|..+...|+|++|+..|++++++.+..      ..+|+++|.+|..+|+|++|+..|++|++   ..|+. 
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence            445666778999999999999999999999876544      67999999999999999999999999994   45553 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                          ..++..+.++..++.+++|++.|+++..+.+
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                4778889999999999999999999887654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.31  E-value=1.6e-06  Score=88.38  Aligned_cols=103  Identities=13%  Similarity=0.041  Sum_probs=89.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINL-----D  528 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l-----~  528 (573)
                      .+..+..+.++|..+...|+|++|++.|++++++.+..      ..+++|+|.+|..+|++++|+.++++++++     +
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            45668899999999999999999999999999886543      369999999999999999999999999994     5


Q ss_pred             -cCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          529 -KKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       529 -p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                       |.. ..++.++.++..++.+++|++.|+++..+.+
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             554 4788889999999999999999998887643

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.30  E-value=1.8e-06  Score=85.03  Aligned_cols=102  Identities=15%  Similarity=0.182  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------Cc-
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDK------KV-  531 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p------~~-  531 (573)
                      .+..+...|..+++.|+|++|+..|+++++.+|++    ..+|.++|.+|..+|++++|+..+++++++..      .. 
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            46678889999999999999999999999999998    57899999999999999999999999998842      22 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          532 RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ..+..++.++...+.+++|++.|+++..+.+..
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  116 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  116 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            477778888888899999999999888765543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.30  E-value=4.9e-06  Score=82.32  Aligned_cols=106  Identities=7%  Similarity=-0.005  Sum_probs=93.4

Q ss_pred             ccChHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Q 008244          458 FNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADCTKAI  525 (573)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~~~----------~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~--~~~Al~~~~~al  525 (573)
                      ..+|+....|+.++..+...++          +++++..++++|+.+|.+..+|++|+.++.++++  +++++..|++++
T Consensus        58 ~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l  137 (331)
T 3dss_A           58 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL  137 (331)
T ss_dssp             TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred             HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence            3467889999999999987766          7999999999999999999999999999999994  999999999999


Q ss_pred             HhCcCcH-HHHHHHHHHHHHHH-HHHHHHHHhhccccCCC
Q 008244          526 NLDKKVR-LICAEAQQERCLDI-TRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       526 ~l~p~~~-~~~~~~~~~~~~~~-~~~al~~~~~~~~~~~~  563 (573)
                      +++|.|. +...++.+...++. ++++++.+......+|.
T Consensus       138 ~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~  177 (331)
T 3dss_A          138 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  177 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred             HhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence            9999984 77788877777776 68899999888887774

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.28  E-value=2.4e-06  Score=83.96  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---  531 (573)
                      ...+..+..+|..+.+.|++++|++.|++++++.++.      ..++.++|.+|..+|++++|+..+++++++.+..   
T Consensus       220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  299 (338)
T 3ro2_A          220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR  299 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence            3456789999999999999999999999999987765      7899999999999999999999999999987653   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                          ..+..++.++..++.+++|.+.|+++..+.+..
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence                377788999999999999999999999887654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.25  E-value=3.2e-06  Score=85.92  Aligned_cols=104  Identities=14%  Similarity=0.057  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcC
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAIN-----LDKK  530 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~-----l~p~  530 (573)
                      ..+..+.++|..+...|+|++|++.|++++++.+.      ...++.|+|.+|..+|++++|+..++++++     .+|.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            56888999999999999999999999999997432      357899999999999999999999999999     5666


Q ss_pred             c-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          531 V-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       531 ~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      . ..++.++.++..++.+++|+..|+++..+.+...
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  295 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS  295 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence            5 4788889999999999999999999998766433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.22  E-value=2.9e-06  Score=86.37  Aligned_cols=102  Identities=15%  Similarity=0.172  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------Cc
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDK------KV  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p------~~  531 (573)
                      ..+..+..+|..+++.|+|++|+..|++++++.|++    ..+|.++|.+|+.+|++++|+..+++++++.+      ..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            347788999999999999999999999999999998    47899999999999999999999999998842      22


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          532 -RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       532 -~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                       ..+..++.++..++.+++|++.|+++..+.+.
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence             37778888888889999999999988876553

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.22  E-value=1.9e-06  Score=85.68  Aligned_cols=104  Identities=8%  Similarity=-0.040  Sum_probs=92.8

Q ss_pred             ChHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCc
Q 008244          460 QKQSAEIAKEKGNQAYKD-K-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--------QAEADCTKAINLDK  529 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~-~-~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~--------~Al~~~~~al~l~p  529 (573)
                      +|+....|..++..+.+. + +++++++.++++|+.+|++..+|++|+.++.++++++        ++++.++++++++|
T Consensus       119 nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp  198 (349)
T 3q7a_A          119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG  198 (349)
T ss_dssp             TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC
Confidence            348899999999999887 7 9999999999999999999999999999999999888        99999999999999


Q ss_pred             CcH-HHHHHHHHHHHHHH-------HHHHHHHHhhccccCCC
Q 008244          530 KVR-LICAEAQQERCLDI-------TRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       530 ~~~-~~~~~~~~~~~~~~-------~~~al~~~~~~~~~~~~  563 (573)
                      .|. +...++.+...++.       ++++++.+.++...+|.
T Consensus       199 ~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~  240 (349)
T 3q7a_A          199 RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH  240 (349)
T ss_dssp             TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC
Confidence            984 77778777766653       78999999888888874

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.21  E-value=4.5e-06  Score=84.85  Aligned_cols=102  Identities=13%  Similarity=0.095  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---  531 (573)
                      ...+..+.++|..++..|++++|+..|++++++.+..      ..++.++|.+|..+|++++|+..+++++++.+..   
T Consensus       224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  303 (406)
T 3sf4_A          224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR  303 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc
Confidence            4557789999999999999999999999999987765      7899999999999999999999999999986543   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                          ..+..++.++..++.+++|++.|+++..+.+
T Consensus       304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                3677788888889999999999998877644

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.20  E-value=6.4e-06  Score=84.26  Aligned_cols=99  Identities=15%  Similarity=0.178  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cC
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD------KK  530 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~------p~  530 (573)
                      .+..+..+|..++..|+|++|+..|++++++      .+....+|.++|.+|..+|++++|+..|++++++.      |.
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  164 (411)
T 4a1s_A           85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS  164 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH
Confidence            4578999999999999999999999999998      57778999999999999999999999999999984      33


Q ss_pred             c-HHHHHHHHHHHHHHH-----------------HHHHHHHHhhccccC
Q 008244          531 V-RLICAEAQQERCLDI-----------------TRRQLKIFHMHWSWS  561 (573)
Q Consensus       531 ~-~~~~~~~~~~~~~~~-----------------~~~al~~~~~~~~~~  561 (573)
                      . ..+..++.++..++.                 +++|++.|.++..+.
T Consensus       165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3 377788888888888                 999999988876654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.19  E-value=1.4e-05  Score=83.87  Aligned_cols=102  Identities=12%  Similarity=0.013  Sum_probs=83.7

Q ss_pred             CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (573)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~-----~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l  527 (573)
                      ...++|..+..+.++|..|..+|+|++|+..|+++|++     .|++   +..++|+|.+|..+|+|++|+..|++|+++
T Consensus       343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            44567889999999999999999999999999999976     3444   689999999999999999999999999986


Q ss_pred             C-----cCcH----HHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244          528 D-----KKVR----LICAEAQQERCLDITRRQLKIFHMH  557 (573)
Q Consensus       528 ~-----p~~~----~~~~~~~~~~~~~~~~~al~~~~~~  557 (573)
                      .     |++.    ..-.+++++..++.++++...|.++
T Consensus       423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4     5552    4445566666677777777777654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.17  E-value=6.5e-06  Score=83.64  Aligned_cols=101  Identities=14%  Similarity=0.048  Sum_probs=88.7

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-  530 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~-  530 (573)
                      ..+..+..+.++|..++..|++++|+..|++++++.+.       .+.++.++|.+|..+|+|++|+..|++|+++.+. 
T Consensus       136 ~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  215 (378)
T 3q15_A          136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI  215 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence            34678899999999999999999999999999987543       2578999999999999999999999999998542 


Q ss_pred             ----c--HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          531 ----V--RLICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       531 ----~--~~~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                          .  ..+..+|.++..++.+++|++.|+++..
T Consensus       216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                1  3777889999999999999999998887

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.16  E-value=7e-06  Score=81.59  Aligned_cols=101  Identities=10%  Similarity=0.027  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH--------------------------------
Q 008244          464 AEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAY--------------------------------  508 (573)
Q Consensus       464 ~~~~~~~g~~~~~~---~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~--------------------------------  508 (573)
                      +-.++-+|..++..   .++.+|+.+|++||+++|+++.+|..++.||                                
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            55566677777665   4568999999999999999988887655555                                


Q ss_pred             ------------HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          509 ------------LESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       509 ------------~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                                  +..|++++|+..+++|+.++|+...+..++.++...|++++|...|+++..++|..
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                        34799999999999999999987788888999999999999999999999999964

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.15  E-value=4.2e-06  Score=81.88  Aligned_cols=101  Identities=10%  Similarity=-0.057  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---Cc---
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KV---  531 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p---~~---  531 (573)
                      ...+...|..+...++|++|+..|++++++.+..      ..+|.++|.+|..+|+|++|+..|++++++-.   .+   
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            4455568999999999999999999999975432      45799999999999999999999999996421   22   


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          532 --RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       532 --~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                        ..++..+.++..++.+++|++.|+++..+.+..
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence              377888999999999999999999988876543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.10  E-value=1.5e-05  Score=85.04  Aligned_cols=101  Identities=13%  Similarity=0.053  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYK-------DKQWL-------KAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~-------~~~~~-------~Ai~~y~~ai~-~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~  526 (573)
                      ..+..|.+.|..+.+       .|+++       +|+..|++|++ ++|++..+|.+++..+.++|++++|...|+++++
T Consensus       270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~  349 (530)
T 2ooe_A          270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA  349 (530)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence            346677777777665       57765       77777777776 6777777777777777777777777777777777


Q ss_pred             hCcCcH--HHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          527 LDKKVR--LICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       527 l~p~~~--~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      ++|++.  .+...+.++...+.+++|.+.|.++.+..|
T Consensus       350 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~  387 (530)
T 2ooe_A          350 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  387 (530)
T ss_dssp             SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            777652  556666666666777777777777776655

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.04  E-value=8.8e-06  Score=66.10  Aligned_cols=68  Identities=7%  Similarity=0.036  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       497 ~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ++..|+++|.+++..|+|++|+..|+++++++|++ ..++.++.++..++.+++|++.|+++..++|..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            46789999999999999999999999999999998 488889999999999999999999999999865

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.02  E-value=2.6e-05  Score=72.27  Aligned_cols=99  Identities=8%  Similarity=-0.075  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcH
Q 008244          463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       463 ~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p--~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      .+..+.++|..+..    .+++++|++.|+++++..+  +++.+++++|.+|..    .+++++|+..|++++++..+..
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  163 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGY  163 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTH
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHH
Confidence            47788999999988    8999999999999999988  459999999999999    8999999999999999944446


Q ss_pred             HHHHHHHHHHHH-H-----HHHHHHHHHhhccccC
Q 008244          533 LICAEAQQERCL-D-----ITRRQLKIFHMHWSWS  561 (573)
Q Consensus       533 ~~~~~~~~~~~~-~-----~~~~al~~~~~~~~~~  561 (573)
                      +.+.++.++..- +     .+++|++.|+++....
T Consensus       164 a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          164 AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            788888877643 2     7899999999887654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.01  E-value=1.3e-05  Score=84.04  Aligned_cols=98  Identities=7%  Similarity=0.018  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cC
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----GNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KK  530 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-----p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-----p~  530 (573)
                      +....+.+..+..+|+|++|+..|+++|++.     |++   ...+.|+|.+|..+|+|++|+..++++|++.     |+
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            3445567777889999999999999999863     334   5899999999999999999999999999874     44


Q ss_pred             c----HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244          531 V----RLICAEAQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       531 ~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                      +    ..+..+|.++..++.+++|...|++++.+.
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~  423 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL  423 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            4    377788899998999999999988887643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.98  E-value=9.1e-06  Score=63.36  Aligned_cols=69  Identities=17%  Similarity=0.159  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       496 ~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .+..+++++|.+|...+++++|+..|+++++++|++. .++.++.++...+.+++|++.|+++..++|..
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            4578999999999999999999999999999999984 78888999999999999999999999998854

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.95  E-value=3.1e-05  Score=71.78  Aligned_cols=95  Identities=8%  Similarity=-0.043  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcC---c
Q 008244          463 SAEIAKEKGNQAYKDK----QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKK---V  531 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~----~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~---~  531 (573)
                      .+..+.++|..+.+ +    ++++|++.|+++++  +.++.+++++|.+|..    .+++++|+..|+++++..+.   -
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~  125 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV  125 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH
Confidence            47788999999988 6    89999999999965  5789999999999998    89999999999999999985   3


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHhhcccc
Q 008244          532 RLICAEAQQERC----LDITRRQLKIFHMHWSW  560 (573)
Q Consensus       532 ~~~~~~~~~~~~----~~~~~~al~~~~~~~~~  560 (573)
                      .+.+.++.++..    .+.+++|++.|+++...
T Consensus       126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            588888888877    67899999999998876

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.92  E-value=2.2e-05  Score=81.01  Aligned_cols=93  Identities=11%  Similarity=-0.087  Sum_probs=76.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCc----
Q 008244          469 EKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KKV----  531 (573)
Q Consensus       469 ~~g~~~~~~~~~~~Ai~~y~~ai~~-----~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-----p~~----  531 (573)
                      +.+....+.|+|++|+..|+++|++     .|++   ...+.|+|.+|..+|+|++|+..|+++|++.     |++    
T Consensus       303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  382 (433)
T 3qww_A          303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA  382 (433)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            3344444568999999999999986     3444   5889999999999999999999999999864     444    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244          532 RLICAEAQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                      ..+..+|.++..++.+++|+..|++++.+.
T Consensus       383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          383 SMWLKLGRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            377888999999999999999998887754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.91  E-value=6.1e-05  Score=75.97  Aligned_cols=100  Identities=10%  Similarity=-0.070  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--  531 (573)
                      .....+.++|..++..|+|++|+..|++++++.        |....++.++|.+|..+|++++|+..+++++++.+..  
T Consensus        91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  170 (373)
T 1hz4_A           91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  170 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence            346668899999999999999999999999875        3356788999999999999999999999999998753  


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244          532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                          ..+..++.++...+.+++|...++.+..+.
T Consensus       171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                366778888888999999999999887653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.91  E-value=1.2e-05  Score=64.06  Aligned_cols=62  Identities=19%  Similarity=0.181  Sum_probs=56.0

Q ss_pred             HHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          462 QSAE-IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       462 ~~~~-~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      .... .+..+|..+++.|++++|++.|+++++++|++..++++        +.+.+++..|+++++++|++
T Consensus        32 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           32 VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            4567 89999999999999999999999999999999998865        67889999999999998875

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.88  E-value=7.1e-05  Score=79.71  Aligned_cols=102  Identities=13%  Similarity=0.080  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~-~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      |+....|...+..+.+.|++++|+..|+++++++|+++ .+|.+.+.++.+.|++++|++.|++|++..|.. ..+...+
T Consensus       318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a  397 (530)
T 2ooe_A          318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  397 (530)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            45678889999999999999999999999999999885 688888888877777777777777777776654 2333333


Q ss_pred             HHH-HHHHHHHHHHHHHhhccccCC
Q 008244          539 QQE-RCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       539 ~~~-~~~~~~~~al~~~~~~~~~~~  562 (573)
                      ... ...+.+++|.+.|+++.+..|
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~~p  422 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKKYG  422 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHCC
Confidence            221 124555666666666665555

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.84  E-value=5.3e-05  Score=78.17  Aligned_cols=73  Identities=14%  Similarity=0.080  Sum_probs=65.4

Q ss_pred             CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (573)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~-----~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l  527 (573)
                      ...++|..+..+.++|..|..+|+|++|+..|+++|++     .|++   +..|+|+|.+|..+|+|++|+..|++|+++
T Consensus       332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            44567889999999999999999999999999999976     2444   688999999999999999999999999986


Q ss_pred             C
Q 008244          528 D  528 (573)
Q Consensus       528 ~  528 (573)
                      .
T Consensus       412 ~  412 (433)
T 3qww_A          412 M  412 (433)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.83  E-value=7.7e-05  Score=77.02  Aligned_cols=99  Identities=10%  Similarity=0.069  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----c
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----GNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----K  529 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-----p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-----p  529 (573)
                      ..+...+....+.++|+|++|++.|++++++.     |++   ...+.|++.+|..+|+|++|+..++++|++.     |
T Consensus       286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~  365 (429)
T 3qwp_A          286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG  365 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence            35566677778889999999999999999763     444   5889999999999999999999999999864     4


Q ss_pred             Cc----HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244          530 KV----RLICAEAQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       530 ~~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                      ++    ..++.+|.++..++++++|+..|++++.+.
T Consensus       366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            44    377888899998999999999888887643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.83  E-value=0.00017  Score=61.78  Aligned_cols=90  Identities=12%  Similarity=0.064  Sum_probs=78.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH--
Q 008244          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVRLICAEAQQERC--  543 (573)
Q Consensus       470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~--  543 (573)
                      +|..+...+.+++|++.|+++.+.  .++.+++++|.+|..    .+++++|++.|++|.+. .+..+.+.++.++..  
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~  107 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGK  107 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCC
Confidence            899998889999999999999987  789999999999999    89999999999999987 333577888888877  


Q ss_pred             --HHHHHHHHHHHhhccccCC
Q 008244          544 --LDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       544 --~~~~~~al~~~~~~~~~~~  562 (573)
                        ...+++|++.|+++.....
T Consensus       108 g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A          108 GVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCcCHHHHHHHHHHHHHCCC
Confidence              6889999999998876543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.83  E-value=1.3e-05  Score=77.07  Aligned_cols=97  Identities=9%  Similarity=-0.044  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCc--HHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKV--RLICAEAQQ  540 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-p~~--~~~~~~~~~  540 (573)
                      .......+..+.+.|+|++|.+.|+..+..+|++. .++.+|.++++.++|++|+..++++++.. |.+  .+++.++.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            34455677888899999999999999999999988 99999999999999999999999988864 322  478999999


Q ss_pred             HHHHHHHHHHHHHHhhccccC
Q 008244          541 ERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~~~~~  561 (573)
                      +..++.+++|++.|++...-+
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHCCCHHHHHHHHHHHhcCC
Confidence            999999999999999987533

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.71  E-value=0.0001  Score=58.27  Aligned_cols=70  Identities=11%  Similarity=0.013  Sum_probs=65.2

Q ss_pred             cCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          494 NGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       494 ~p~~~~~~~n~a~~~~~l~~---~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +|+++.++..+|.+++..++   .++|...+++||++||++ .+.+.+|......+++++|+..|++....+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            68999999999999987776   799999999999999999 58889999999999999999999999999887

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.69  E-value=0.00014  Score=73.37  Aligned_cols=103  Identities=9%  Similarity=-0.029  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-----  530 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~-----  530 (573)
                      .....+..+|..++..|+|++|+..|++++++.+..      ..++.++|.++...|++++|+..|++++++.+.     
T Consensus        51 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  130 (373)
T 1hz4_A           51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ  130 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            356678899999999999999999999999986643      355889999999999999999999999998632     


Q ss_pred             ---c-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          531 ---V-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       531 ---~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                         . ..+..++.++...+++++|.+.|+++..+.+..
T Consensus       131 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A          131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence               2 356667888888899999999999998877643

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.63  E-value=0.00012  Score=72.66  Aligned_cols=94  Identities=15%  Similarity=0.032  Sum_probs=76.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH--HHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRL--ICAEA  538 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~--~~~~~  538 (573)
                      +..+..+...+..+..+|++++|+..+++|++++| +..+|..+|.++...|++++|++.|++|+.++|....  ++.-.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l  352 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENG  352 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHS
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCc
Confidence            45677888888888888999999999999999996 5788899999999999999999999999999999853  22223


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 008244          539 QQERCLDITRRQLKIFH  555 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~  555 (573)
                      -.+..++.+.-++..|.
T Consensus       353 ~F~sn~~~i~~~~~~~~  369 (372)
T 3ly7_A          353 IFQTSVPYVVPYLDKFL  369 (372)
T ss_dssp             SSCCCHHHHCHHHHHHH
T ss_pred             eeecchhhhHHHHHhcc
Confidence            44455566666666664

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.59  E-value=0.00028  Score=72.80  Aligned_cols=74  Identities=12%  Similarity=0.024  Sum_probs=65.7

Q ss_pred             CCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----GNN---ATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (573)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-----p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~  526 (573)
                      ....+++..+..+.++|..|..+|+|++|+..|.++|++.     |++   ...++|+|.+|..+|+|++|+..+++|++
T Consensus       320 ~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          320 RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3456778899999999999999999999999999999762     444   68899999999999999999999999998


Q ss_pred             hC
Q 008244          527 LD  528 (573)
Q Consensus       527 l~  528 (573)
                      +-
T Consensus       400 i~  401 (429)
T 3qwp_A          400 IM  401 (429)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.53  E-value=0.00017  Score=62.00  Aligned_cols=87  Identities=11%  Similarity=-0.027  Sum_probs=78.0

Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-cCc--HHHHHHHHHHHHHHHHHHHHH
Q 008244          479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLD-KKV--RLICAEAQQERCLDITRRQLK  552 (573)
Q Consensus       479 ~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~---~~~~Al~~~~~al~l~-p~~--~~~~~~~~~~~~~~~~~~al~  552 (573)
                      ..+.+.+.|.+.++.++.+..+.++.|.|+.+.+   ++++++..+++.++.+ |+.  ..+|.++..+..+++|++|.+
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3466778899999999999999999999999999   6779999999999999 843  488999999999999999999


Q ss_pred             HHhhccccCCCCC
Q 008244          553 IFHMHWSWSPPIK  565 (573)
Q Consensus       553 ~~~~~~~~~~~~~  565 (573)
                      .++..++++|...
T Consensus        93 y~~~lL~ieP~n~  105 (152)
T 1pc2_A           93 YVRGLLQTEPQNN  105 (152)
T ss_dssp             HHHHHHHHCTTCH
T ss_pred             HHHHHHhcCCCCH
Confidence            9999999999654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.43  E-value=0.00024  Score=67.79  Aligned_cols=68  Identities=9%  Similarity=-0.033  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcC
Q 008244          463 SAEIAKEKGNQAYKD-----KQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKK  530 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~-----~~~~~Ai~~y~~ai~~~p~~-~~~~~n~a~~~~~-l~~~~~Al~~~~~al~l~p~  530 (573)
                      ....|.-+|..|++.     |+.++|.++|++||+++|+. ...++..|..+.. .+++++|.+.+++|++.+|.
T Consensus       198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            344566666666663     66666666666666666653 6666666666655 36666666666666666655

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.41  E-value=0.00074  Score=55.92  Aligned_cols=70  Identities=10%  Similarity=-0.010  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          463 SAEIAKEKGNQAYKDKQWLK---AISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~---Ai~~y~~ai~~~-p-~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      ..+..++.+..+.+..+..+   +|..++..++.+ | ..-.+++.+|..++++|+|.+|+++++..|+++|+|.
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            46788899999998887766   999999988887 5 5679999999999999999999999999999999995

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.40  E-value=0.0009  Score=70.29  Aligned_cols=95  Identities=14%  Similarity=-0.011  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHH
Q 008244          464 AEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVRLICA  536 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~---~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~~~~~  536 (573)
                      ...+.++|..+++.|   ++++|+++|+++++.  .++.+++++|.+|..    .+++++|+..|+++++.. +..+.+.
T Consensus       328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~  404 (490)
T 2xm6_A          328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQ  404 (490)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHH
Confidence            455677777777654   777888888887776  567778888888877    777888888888877764 2246666


Q ss_pred             HHHHHHH----HHHHHHHHHHHhhccccC
Q 008244          537 EAQQERC----LDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       537 ~~~~~~~----~~~~~~al~~~~~~~~~~  561 (573)
                      ++.++..    .+.+++|.+.|+++....
T Consensus       405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          405 LGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            6666665    567777777777776655

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.39  E-value=0.00077  Score=65.63  Aligned_cols=96  Identities=9%  Similarity=-0.048  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----cHHHHHHHH
Q 008244          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-----VRLICAEAQ  539 (573)
Q Consensus       467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p--~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~-----~~~~~~~~~  539 (573)
                      +...|.++...|++++|++.|.+.|..+|  ++..++..++.+|+++|+.+.|.+.+++..+.+|+     +.....+++
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae  182 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE  182 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence            35677777777777777777777777776  66777777777777777777777777777777772     444444443


Q ss_pred             H--HHHHH--HHHHHHHHHhhccccCC
Q 008244          540 Q--ERCLD--ITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       540 ~--~~~~~--~~~~al~~~~~~~~~~~  562 (573)
                      .  ....+  .+++|+..|+...+..|
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFP  209 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence            3  33333  67777777776554444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.35  E-value=0.0023  Score=54.48  Aligned_cols=64  Identities=22%  Similarity=0.101  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008244          463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLD  528 (573)
Q Consensus       463 ~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~  528 (573)
                      .+..++++|..|.+    .+++++|++.|+++.+.  .++.+++++|.+|..    .+++++|+..|++|.++.
T Consensus        56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            37889999999999    89999999999999987  789999999999999    999999999999999985

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.27  E-value=0.0011  Score=69.72  Aligned_cols=95  Identities=8%  Similarity=-0.100  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHH
Q 008244          463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVRLI  534 (573)
Q Consensus       463 ~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~~~  534 (573)
                      .+..+..+|..+..    .+++++|+++|+++++.  .++.+++++|.+|..    .+++++|+..|+++++.+ +..+.
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~  150 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQ  150 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHH
Confidence            46678889999998    89999999999999876  588899999999998    889999999999998764 23577


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHhhcccc
Q 008244          535 CAEAQQERC----LDITRRQLKIFHMHWSW  560 (573)
Q Consensus       535 ~~~~~~~~~----~~~~~~al~~~~~~~~~  560 (573)
                      +.++.++..    .+.+++|++.|+++...
T Consensus       151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            778887776    56889999999988764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.23  E-value=0.0042  Score=52.25  Aligned_cols=70  Identities=7%  Similarity=0.017  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          463 SAEIAKEKGNQAYKDKQW---LKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~---~~Ai~~y~~ai~~~p~-~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      ..+..++.+..+.+..+-   +++|..++..++..|. .-.++|.+|..++++|+|.+|.++++..|+++|+|.
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~  111 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  111 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            367788999999887655   5799999999998884 578999999999999999999999999999999995

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.22  E-value=0.0036  Score=51.95  Aligned_cols=69  Identities=7%  Similarity=0.010  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          464 AEIAKEKGNQAYKDKQW---LKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~---~~Ai~~y~~ai~~~p~-~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      ++..++.+..+.+..+-   .++|..++..++.+|. .-.+++.+|..++++|+|.+|.++++..|+++|+|.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            57788888888887654   5799999999998884 579999999999999999999999999999999996

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.17  E-value=0.0022  Score=73.59  Aligned_cols=91  Identities=11%  Similarity=0.051  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----------
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----------  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----------  531 (573)
                      +....|.+.|..+.+.|+|++|+++|.+|     +++..|.+.+.++.++|+|++|++.+.+|.+.+++.          
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence            44788999999999999999999999776     899999999999999999999999999998877542          


Q ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244          532 ------------------RLICAEAQQERCLDITRRQLKIFHMH  557 (573)
Q Consensus       532 ------------------~~~~~~~~~~~~~~~~~~al~~~~~~  557 (573)
                                        ..++..|..+...+.+++|...|.++
T Consensus      1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence                              12333455555556677777777665

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.16  E-value=0.0024  Score=73.40  Aligned_cols=98  Identities=12%  Similarity=0.021  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------------------------CCHHHHHHHHHHHHHcCCHHHHHH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-------------------------NNATYYSNRAAAYLESGSFLQAEA  519 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p-------------------------~~~~~~~n~a~~~~~l~~~~~Al~  519 (573)
                      ..|..++..+.+.|+|++|+++|++|...++                         .++..+..++..|.+.|.|++|+.
T Consensus      1222 ~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A         1222 SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence            3455555555555555555555555533322                         123344455555556666666666


Q ss_pred             HHHHHHHhCcCcHHHH---HHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          520 DCTKAINLDKKVRLIC---AEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       520 ~~~~al~l~p~~~~~~---~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      .|+++|.+++.+..++   .........+...+.++.|.....+++
T Consensus      1302 LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A         1302 MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred             HHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence            6666666665543221   112222233555555555555544433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.14  E-value=0.00095  Score=69.47  Aligned_cols=90  Identities=13%  Similarity=-0.062  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244          466 IAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----GSFLQAEADCTKAINLDKKV-RLICAE  537 (573)
Q Consensus       466 ~~~~~g~~~~~~~---~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l----~~~~~Al~~~~~al~l~p~~-~~~~~~  537 (573)
                      .+.++|..+.+.|   ++++|++.|+++++..+.++..++++|.+|...    +++++|+..|+++.   |++ .+.+.+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            5555666666665   666666666666666666666556666665444    45556666665555   333 344444


Q ss_pred             HHH-H--HHHHHHHHHHHHHhhcc
Q 008244          538 AQQ-E--RCLDITRRQLKIFHMHW  558 (573)
Q Consensus       538 ~~~-~--~~~~~~~~al~~~~~~~  558 (573)
                      +.+ +  ...+.+++|++.|+++.
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHH
Confidence            443 2  22344455555554443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.07  E-value=0.0021  Score=66.80  Aligned_cols=93  Identities=11%  Similarity=-0.070  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCcCc-H
Q 008244          462 QSAEIAKEKGNQA---YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----SFLQAEADCTKAINLDKKV-R  532 (573)
Q Consensus       462 ~~~~~~~~~g~~~---~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~-----~~~~Al~~~~~al~l~p~~-~  532 (573)
                      ..+..++++|..+   ...+++++|++.|+++++.  .++.+++++|.+|. .|     ++++|+..|++|+   +.+ .
T Consensus       246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~  319 (452)
T 3e4b_A          246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA  319 (452)
T ss_dssp             GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH
Confidence            3355566666663   3567777777777777654  36777777777776 34     7777777777777   444 4


Q ss_pred             HHHHHHHHHHH----HHHHHHHHHHHhhcccc
Q 008244          533 LICAEAQQERC----LDITRRQLKIFHMHWSW  560 (573)
Q Consensus       533 ~~~~~~~~~~~----~~~~~~al~~~~~~~~~  560 (573)
                      +.+.++.++..    ...+++|++.|+++...
T Consensus       320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence            66666655543    23677777777776653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.00094  Score=68.50  Aligned_cols=98  Identities=9%  Similarity=0.079  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----  531 (573)
                      ..+..+.++|..++..|+|++|+..+++++...      +....+|.+.+.+|..+++|++|...+++++++.+..    
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  212 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT  212 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence            357788999999999999999999999998763      3347899999999999999999999999999886432    


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          532 ----RLICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                          ..+...+..+...+.+.+|.+.|..++.
T Consensus       213 ~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          213 QTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                2344445555555677777777766654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.01  E-value=0.0024  Score=55.30  Aligned_cols=93  Identities=13%  Similarity=0.052  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---Cc--
Q 008244          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KV--  531 (573)
Q Consensus       466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p---~~--  531 (573)
                      .++++...++..+.|+.|+-.++.++.+..++         ...+...|.+++..++|..|+..|++||++.-   ++  
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46778888889999999999988877664332         35788889999999999999999999876532   11  


Q ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244          532 ---------------------RLICAEAQQERCLDITRRQLKIFHMHW  558 (573)
Q Consensus       532 ---------------------~~~~~~~~~~~~~~~~~~al~~~~~~~  558 (573)
                                           ...|+.+.++..++.+++|+..++.-+
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence                                 255777888888899999998887543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.82  E-value=0.0074  Score=52.25  Aligned_cols=64  Identities=19%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------------------------CCHHHHHHHHHHHHHcCCHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-------------------------NNATYYSNRAAAYLESGSFL  515 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p-------------------------~~~~~~~n~a~~~~~l~~~~  515 (573)
                      ..+.+.+.-.|+.+|.+++|..|...|++||++..                         .+.++.+..+.||.++++++
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            46688899999999999999999999999986521                         11378899999999999999


Q ss_pred             HHHHHHHHH
Q 008244          516 QAEADCTKA  524 (573)
Q Consensus       516 ~Al~~~~~a  524 (573)
                      +|+...+..
T Consensus       140 ~Ai~~Le~I  148 (167)
T 3ffl_A          140 DAIAILDGI  148 (167)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHhcC
Confidence            999987764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.82  E-value=0.002  Score=65.72  Aligned_cols=92  Identities=12%  Similarity=0.085  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH------------------------------HHHHHHHcCCH
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN------------------------------RAAAYLESGSF  514 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n------------------------------~a~~~~~l~~~  514 (573)
                      ..|..++..+++.|+|++|+++|.++     +++..|..                              +..+|.+.|++
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF  223 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCH
Confidence            45677888888888888888888887     24444444                              34556666677


Q ss_pred             HHHHHHHHHHHHhCcCcH-HHHHH--HHHHHHHHHHHHHHHHHhhccccC
Q 008244          515 LQAEADCTKAINLDKKVR-LICAE--AQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       515 ~~Al~~~~~al~l~p~~~-~~~~~--~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                      ++|+..+++++.+++.+. .+..+  +......+...+.++.|..+..++
T Consensus       224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~  273 (449)
T 1b89_A          224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP  273 (449)
T ss_dssp             HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHH
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCc
Confidence            777777777777776653 22222  233333466666666666555443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.79  E-value=0.0064  Score=58.01  Aligned_cols=69  Identities=9%  Similarity=0.003  Sum_probs=58.3

Q ss_pred             CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHH-HHHHHHHHHHHhhccccCCCC
Q 008244          496 NNATYYSNRAAAYLES-----GSFLQAEADCTKAINLDKKV--RLICAEAQQERC-LDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       496 ~~~~~~~n~a~~~~~l-----~~~~~Al~~~~~al~l~p~~--~~~~~~~~~~~~-~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .+..+|..+|..|.++     |+.++|.++|++||+++|+.  ...+..++.+.. .++++++.+.++++...+|..
T Consensus       197 ~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          197 QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            3567888899999995     99999999999999999964  577777877766 488999999999999888854

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.75  E-value=0.002  Score=62.75  Aligned_cols=92  Identities=5%  Similarity=-0.033  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CcCc
Q 008244          466 IAKEKGNQAYKDK--QWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL----------DKKV  531 (573)
Q Consensus       466 ~~~~~g~~~~~~~--~~~~Ai~~y~~ai~~~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l----------~p~~  531 (573)
                      .....+.+.+..|  ++++|+..|+++.+..|+  ....++|   |++++|++++|.+++++++++          +|++
T Consensus       178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~  254 (310)
T 3mv2_B          178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK  254 (310)
T ss_dssp             HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence            3334454455445  888888888888777776  3455555   788888888888888877776          3555


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          532 R-LICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       532 ~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      . .+..+..+...++.  ++.+.+.+..+..|
T Consensus       255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P  284 (310)
T 3mv2_B          255 PTFLANQITLALMQGL--DTEDLTNQLVKLDH  284 (310)
T ss_dssp             HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence            4 44455444444443  66666666666666

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.0027  Score=64.96  Aligned_cols=67  Identities=10%  Similarity=-0.048  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c-----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--V-----RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--~-----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      ..++.++|.+|..+|+|++|+..+++++.....  +     ..+...++++..++.+.+|...|.++....+..
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  208 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI  208 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence            455666666666666666666666666554221  1     255555666666666666666666666554443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.47  E-value=0.015  Score=46.57  Aligned_cols=45  Identities=11%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA  505 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a  505 (573)
                      ......+.++|..+++.|++++|+..|+++++++|++..+..|+.
T Consensus        43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            456788999999999999999999999999999999999999987

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.14  E-value=0.0033  Score=64.19  Aligned_cols=89  Identities=11%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-H----HHH----
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-R----LIC----  535 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~----~~~----  535 (573)
                      ..|...|..++..|+|++|+..|+++        ..|.+++.|+.++|+|++|++.|++|.  +|.- +    +..    
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~e  192 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE  192 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCc
Confidence            38999999999999999999999987        579999999999999999999999993  4421 1    111    


Q ss_pred             -------------------HHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          536 -------------------AEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       536 -------------------~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                                         .....+...+.++++++.++.+..+++.
T Consensus       193 f~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a  239 (449)
T 1b89_A          193 FRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA  239 (449)
T ss_dssp             HHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred             HHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence                               1124566668999999999999988864

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.065  Score=58.53  Aligned_cols=62  Identities=10%  Similarity=0.072  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a  524 (573)
                      ....+..++.-+.++|+|+-|+++-++|+...|.+...|+.++.||.++|+|+.|+-..+-+
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34567788999999999999999999999999999999999999999999999998655543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.37  E-value=0.032  Score=46.11  Aligned_cols=89  Identities=10%  Similarity=-0.068  Sum_probs=77.2

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-cCc--HHHHHHHHHHHHHHHHHHH
Q 008244          477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ---AEADCTKAINLD-KKV--RLICAEAQQERCLDITRRQ  550 (573)
Q Consensus       477 ~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~---Al~~~~~al~l~-p~~--~~~~~~~~~~~~~~~~~~a  550 (573)
                      ....+.+.+.|.+.++.++.+...-++.|.|+.+..+..+   ++..++..++-+ |..  ..+|.+|..+..++.|.+|
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            3445677788999999899999999999999999988776   999999999987 644  4888999999999999999


Q ss_pred             HHHHhhccccCCCCC
Q 008244          551 LKIFHMHWSWSPPIK  565 (573)
Q Consensus       551 l~~~~~~~~~~~~~~  565 (573)
                      .+.++..++..|..+
T Consensus        94 ~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNN  108 (126)
T ss_dssp             HHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhCCCCH
Confidence            999999999999654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.30  E-value=0.14  Score=47.96  Aligned_cols=62  Identities=23%  Similarity=0.226  Sum_probs=58.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       471 g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      ...+++.++.++|++.....|+.+|.|+.....+-+.+.-.|+|+.|++.++.+.+++|+..
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            34678899999999999999999999999999999999999999999999999999999983

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.27  E-value=0.16  Score=55.15  Aligned_cols=99  Identities=14%  Similarity=0.064  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------Cc
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAI-SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-----------DK  529 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai-~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l-----------~p  529 (573)
                      .....|...+.-+.+.++.++|+ +.|.+|+..+|.+..+|...+....+.+++++|.+.|+++++.           .|
T Consensus       341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p  420 (679)
T 4e6h_A          341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP  420 (679)
T ss_dssp             TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence            45788889999888999999997 9999999999999999999999999999999999999999975           24


Q ss_pred             C-----------c-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          530 K-----------V-RLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       530 ~-----------~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                      .           + ..+...++.....+..+.|-+.|.++.+.
T Consensus       421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            2           2 24555566666667788888888888766

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.21  E-value=0.13  Score=43.66  Aligned_cols=99  Identities=16%  Similarity=-0.073  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244          463 SAEIAKEKGNQAYKDKQW------LKAISFYTEAIKLNGNN--------ATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~------~~Ai~~y~~ai~~~p~~--------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~  528 (573)
                      +.+.|..-...+-+.|+.      ++-++.|++|+..-|-.        ..+|.+.|.- ..+++.++|.+.|+.++++.
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh
Confidence            344444444444444555      55555666666544431        2344444422 44556666666666666654


Q ss_pred             cCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244          529 KKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       529 p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  562 (573)
                      ..+ +.+...|+.+..++....|.+.+.++..+.|
T Consensus        91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            444 3444455555555566666665555555544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.35  E-value=0.57  Score=47.15  Aligned_cols=56  Identities=11%  Similarity=-0.023  Sum_probs=30.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (573)
Q Consensus       470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al  525 (573)
                      ++..+...|++.+|+..+.+++..+|-+..+|..+-.+|...|+..+|++.|+++-
T Consensus       177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33444455555555555555555555555555555555555555555555555443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.32  E-value=0.53  Score=40.55  Aligned_cols=94  Identities=9%  Similarity=0.009  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhC--cC----------
Q 008244          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI--NLD--KK----------  530 (573)
Q Consensus       465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al--~l~--p~----------  530 (573)
                      +-..-.+..++-.|.|..|+-..     ..-+-....+..+.||.++++|..|+...+..+  +.+  |+          
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHHhhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            33455788888899987777644     344667888889999999999999999999999  333  33          


Q ss_pred             ---cH--HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          531 ---VR--LICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       531 ---~~--~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                         ++  .+...|......+..++|.+.|.+++...|-
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence               23  4445678888889999999999998887763

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.65  E-value=2.8  Score=35.48  Aligned_cols=78  Identities=13%  Similarity=-0.079  Sum_probs=64.9

Q ss_pred             CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Q 008244          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLIC  535 (573)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~  535 (573)
                      ......-+..|..-+.- ...++.++|.+.|+.++++....+..|...|+--.+.|+...|.+.+.+|+.+.|.....+
T Consensus        54 ~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           54 YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            33444556666666643 5669999999999999999888899999999999999999999999999999999876443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=92.02  E-value=0.59  Score=50.78  Aligned_cols=101  Identities=6%  Similarity=-0.134  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHH-HHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKVRLI-CAEAQ  539 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~-~p~~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~p~~~~~-~~~~~  539 (573)
                      ....|...++...+.++.+.|...|.+|++. .+.....|...+..-.+.++ ++.|...|+++++..|+...+ ...++
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            3456777777777788888899999999887 44556777776766666654 888999999999888887533 35566


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .+...+..+.+-..|+++....|.
T Consensus       513 fe~~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          513 FLIYVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcCC
Confidence            666677888888888888877663

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.62  E-value=0.75  Score=46.30  Aligned_cols=56  Identities=13%  Similarity=-0.032  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHh
Q 008244          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFH  555 (573)
Q Consensus       500 ~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~  555 (573)
                      +...++.+++.+|++.+|+..+++++..+|-+. .+..+..++...++..+|++.|+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~  229 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR  229 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345577888889999999999999999998773 44444444444455555555444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.48  E-value=2.6  Score=43.93  Aligned_cols=94  Identities=7%  Similarity=-0.048  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKVRLICAEAQQ  540 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l--~p~~~~~~~~~~~  540 (573)
                      ...|..+-..+.+.|++++|++.|++..+.. .-+...|..+=.+|.+.|++++|.+.+++..+.  .|+...+......
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~  184 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV  184 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            5678888899999999999999999988764 236778888889999999999999999998875  4777666666666


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 008244          541 ERCLDITRRQLKIFHMH  557 (573)
Q Consensus       541 ~~~~~~~~~al~~~~~~  557 (573)
                      +...+..++|++.|+..
T Consensus       185 ~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          185 SMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HhhCCCHHHHHHHHHHH
Confidence            66667888888888754

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.46  E-value=1.6  Score=43.75  Aligned_cols=91  Identities=10%  Similarity=0.005  Sum_probs=70.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cC--c--HH
Q 008244          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLESGSFLQAEADCTKAINLD----KK--V--RL  533 (573)
Q Consensus       468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~--~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~----p~--~--~~  533 (573)
                      ..+|..|+..|+|.+|++.+++.++....  +    .+.|......|..++++.++-..+++|.+..    ++  .  ..
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            37899999999999999999998875332  2    4788889999999999999999999987654    22  2  24


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008244          534 ICAEAQQER-CLDITRRQLKIFHMHW  558 (573)
Q Consensus       534 ~~~~~~~~~-~~~~~~~al~~~~~~~  558 (573)
                      ....|..+. ..+.|+.|...|..++
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            455567777 6677788877777654

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=88.25  E-value=3.8  Score=30.81  Aligned_cols=31  Identities=26%  Similarity=0.192  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK  492 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~  492 (573)
                      +.+..+..+|...-+.|+|++|+.+|.++|+
T Consensus        17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   47 (83)
T 2w2u_A           17 EMARKYAINAVKADKEGNAEEAITNYKKAIE   47 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4566777777777888888888887766654

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=88.06  E-value=1.3  Score=46.02  Aligned_cols=66  Identities=21%  Similarity=0.162  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      .+..+|....-...+..|..+|.+|+.+.|++...|+.+|......+++-+|+-+|.+++--..-+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf  219 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCC
Confidence            345677777777788999999999999999999999999999999999999999999998765434

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=87.67  E-value=4.6  Score=30.39  Aligned_cols=30  Identities=27%  Similarity=0.251  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK  492 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~  492 (573)
                      .+..+..++...-+.|+|++|+.+|.++|+
T Consensus        10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie   39 (83)
T 2v6y_A           10 MARKYAILAVKADKEGKVEDAITYYKKAIE   39 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            455566666666677777777776655543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.58  E-value=0.81  Score=46.76  Aligned_cols=96  Identities=7%  Similarity=-0.136  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCc----HH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKV----RL  533 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~---~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~---p~~----~~  533 (573)
                      ...+..+|..+++.|++++|+++|.+..+....   -...+.+.-.+++..++|..+...++++-.+-   ++.    +.
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            345678999999999999999999999887543   36888889999999999999999999996653   222    23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                      ....+..+...+.|..|.+.|...+.
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence            34445555555778888887765543

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=84.78  E-value=11  Score=28.50  Aligned_cols=31  Identities=16%  Similarity=0.306  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK  492 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~  492 (573)
                      ..+..+..++..+-+.|+|++|+.+|.++|+
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie   44 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGID   44 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4466677777777778888888887766654

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=83.65  E-value=13  Score=28.52  Aligned_cols=31  Identities=16%  Similarity=0.285  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK  492 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~  492 (573)
                      +.+..+..++...-+.++|++|+.+|.++|+
T Consensus        13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie   43 (93)
T 1wfd_A           13 TAAVAVLKRAVELDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4566677777777777888888777765554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=83.45  E-value=5.4  Score=32.94  Aligned_cols=79  Identities=8%  Similarity=-0.180  Sum_probs=64.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244          486 FYTEAIKLNGNNATYYSNRAAAYLESGSF---LQAEADCTKAINLDKKV--RLICAEAQQERCLDITRRQLKIFHMHWSW  560 (573)
Q Consensus       486 ~y~~ai~~~p~~~~~~~n~a~~~~~l~~~---~~Al~~~~~al~l~p~~--~~~~~~~~~~~~~~~~~~al~~~~~~~~~  560 (573)
                      .|.+-+ ...-.+..-+|.|-|+.+..+.   .+++..++..++.+|..  ..+|.++..+..++.|++|++..+..++.
T Consensus        29 qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           29 QVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            344433 3334678899999999998764   57899999999999966  38888999999999999999999999999


Q ss_pred             CCCCC
Q 008244          561 SPPIK  565 (573)
Q Consensus       561 ~~~~~  565 (573)
                      .|..+
T Consensus       108 eP~N~  112 (134)
T 3o48_A          108 ERNNK  112 (134)
T ss_dssp             CTTCH
T ss_pred             CCCCH
Confidence            99754

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=83.39  E-value=6.9  Score=33.76  Aligned_cols=68  Identities=13%  Similarity=0.021  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hhc---------------CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAI--KLN---------------GNNAT-YYSNRAAAYLESGSFLQAEADCTKAI  525 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai--~~~---------------p~~~~-~~~n~a~~~~~l~~~~~Al~~~~~al  525 (573)
                      +....-+...+.+.++|+.|+.+.+..|  +++               |.+.+ .++.+|..+...|+-+||+.++.+..
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            5556667889999999999999999999  333               33444 45557899999999999999999998


Q ss_pred             HhCcCc
Q 008244          526 NLDKKV  531 (573)
Q Consensus       526 ~l~p~~  531 (573)
                      .+.|-+
T Consensus       142 ~~~~lf  147 (242)
T 3kae_A          142 GKSFLF  147 (242)
T ss_dssp             HHCCCH
T ss_pred             CCcccc
Confidence            887764

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=83.30  E-value=2.4  Score=46.30  Aligned_cols=61  Identities=10%  Similarity=-0.034  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWS  559 (573)
Q Consensus       499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~  559 (573)
                      .++.--+.-++..++|+-|++.+++|+..-|.. ...+.+++++..+++|+.||-.+...+.
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm  399 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR  399 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence            355555777778999999999999999999995 6999999999999999999999988874

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=82.24  E-value=9.5  Score=31.89  Aligned_cols=71  Identities=8%  Similarity=-0.139  Sum_probs=62.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          495 GNNATYYSNRAAAYLESGSF---LQAEADCTKAINLDKKV--RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       495 p~~~~~~~n~a~~~~~l~~~---~~Al~~~~~al~l~p~~--~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      .-.....+|.|.|+.+..+.   .+++..++..++-+|..  ..+|.++..+..++.|.+|.+..+..++..|..+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~  111 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  111 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            46788999999999998865   57999999999988876  3888899999999999999999999999999754

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=81.34  E-value=18  Score=29.11  Aligned_cols=67  Identities=16%  Similarity=0.180  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-H-HHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-R-LICAEAQ  539 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~-~~~~~~~  539 (573)
                      +.+..+..++...-+.++|++|+.+|.++|                           +.|.++++..+.+ . .-..+.+
T Consensus        16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Ai---------------------------e~l~~alk~e~~~~~~k~~lr~K   68 (117)
T 2cpt_A           16 QKAIDLASKAAQEDKAGNYEEALQLYQHAV---------------------------QYFLHVVKYEAQGDKAKQSIRAK   68 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------------------------HHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHH---------------------------HHHHHHHHhccCCHHHHHHHHHH
Confidence            445566666666666777777777665544                           4456666666433 2 2334455


Q ss_pred             HHHHHHHHHHHHHHHh
Q 008244          540 QERCLDITRRQLKIFH  555 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~  555 (573)
                      +..++.+.++-...+.
T Consensus        69 ~~eYl~RAE~LK~~l~   84 (117)
T 2cpt_A           69 CTEYLDRAEKLKEYLK   84 (117)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            5666655555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	573
d2gi3a1	475	c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf	3e-49
d2f2aa1	485	c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf	5e-46
d1m22a_	490	c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon	4e-27
d1ocka_	412	c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap	3e-22
d1mt5a_	537	c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid	7e-21
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-10
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-10
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-06
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	9e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-04
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	3e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-04
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	4e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	7e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.001
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	0.003

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

 Score =  175 bits (445), Expect = 3e-49
 Identities = 79/399 (19%), Positives = 155/399 (38%), Gaps = 27/399 (6%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
              G+  A+ D     G  T          +  +   +TVV  + E G   +GK  +DEF
Sbjct: 57  KFWGIPVAIKDNILTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKANLDEF 114

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +     +    NP    ++PGGSS G+A AV+A +V  +LG DT G VR P++ CG
Sbjct: 115 AMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCG 174

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV-----------------L 219
           ++G++P+YG VS  G++  ++SLD +G   +  +    +  +                  
Sbjct: 175 VVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDF 234

Query: 220 LQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV-LKHENLGEYFDS 278
           L          +  +  +     ++       +  +K  E+L  +   +K  ++     +
Sbjct: 235 LSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVAT 294

Query: 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEML-----E 333
                     +N    + ++   R + K     ++++       ++   I          
Sbjct: 295 YYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAA 354

Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLL 393
             E        +R ++   ++ +L     ++TPT+     K+G  +     Y    F+  
Sbjct: 355 YYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFT-- 412

Query: 394 SIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
             A+++G   ++VP G+ +  P  V  I R   D  +  
Sbjct: 413 IPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFR 451

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  166 bits (422), Expect = 5e-46
 Identities = 85/406 (20%), Positives = 154/406 (37%), Gaps = 30/406 (7%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +    L G+   + D     G  T                T        +  A  IGK  
Sbjct: 66  QMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLH--KENAVLIGKLN 123

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           +DEFA   +    ++    NP     +PGGSS G+A AVAA LV  SLG DT G +R P+
Sbjct: 124 MDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPA 183

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK----ILRHVGHVLLQLPFAAQR 228
           A+CG++G +P+YG VS  G++  ++SLD +G   R+ K    +L  +    +    +A  
Sbjct: 184 AYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPV 243

Query: 229 SPRQIIIA-DDCFELLKI--PADRVVQVVIKSTEKLFGRQVLKHENLG-EYFDSKVPSLK 284
                        + LK+  P + + + V    ++     V   ++LG    +  +P+ K
Sbjct: 244 DDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTK 303

Query: 285 ------------GFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEML 332
                                  +       E  +    +  S       ++   I    
Sbjct: 304 FGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGT 363

Query: 333 -----EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQN 387
                   +   +  + +R  +++    + ++  ++V PT       LG  E + +    
Sbjct: 364 FALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLG--EEIDDPLTM 421

Query: 388 RAFSLL-SIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
            A  LL +  +++G   ++VP G  +  P  + FI +   ++ L  
Sbjct: 422 YANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYR 467

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

 Score =  112 bits (280), Expect = 4e-27
 Identities = 96/413 (23%), Positives = 151/413 (36%), Gaps = 43/413 (10%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +   PL G+   + D  +     T  G              + +V  L + GA  +GKT 
Sbjct: 69  RLRGPLHGIPLLLKDNINAAPMATSAGSLAL---QGFRPDDAYLVRRLRDAGAVVLGKTN 125

Query: 113 VDEFA-----YSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           + E+A      SI+G +       NP   S  P GSSSG+AVAVAA+L   ++G +T G 
Sbjct: 126 LSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGS 185

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL-LQLPFAA 226
           +  P+A  G++G +P+ G VS  GIIPIS S DT G  AR       V   +  +     
Sbjct: 186 IVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADP 245

Query: 227 QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV--LKHENLGEYFDSKVPSLK 284
             +        D    L     R  ++ +  T  L  R +  L  +   E   +    + 
Sbjct: 246 ATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVP 305

Query: 285 GFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPAL-----------------------D 321
                 G      R +  YEFK     +  + +  L                       +
Sbjct: 306 VELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQE 365

Query: 322 PDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI--LVTPTTAYPPPKLGGKE 379
             + A+    L     +     + R      I + L    +  LV PTT    P     +
Sbjct: 366 LLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGD 425

Query: 380 MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
               +         S A+V+G   +TVP+G  D  P  + F+     +  L++
Sbjct: 426 DFPGES-------YSAAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIE 471

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 97.1 bits (240), Expect = 3e-22
 Identities = 84/393 (21%), Positives = 139/393 (35%), Gaps = 32/393 (8%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +A  PL G++  + D+ D     T  G   +          + VV  L   GAT IGKT 
Sbjct: 49  QASGPLRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTT 106

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
              FA        +     +       PGGSSSG+A AV A ++  +LG  T G V  P+
Sbjct: 107 TTAFASRDPTATLNPHNTGHS------PGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPA 160

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQ 232
           A+CG    +PS+  +  +G+   S +LDTVG F    + L      +      +   P +
Sbjct: 161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAK 220

Query: 233 IIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGE 292
                   +      +   +  +++  K   R     +                 +   E
Sbjct: 221 APRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQA------------IDLPEAVHE 268

Query: 293 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSA 352
              +  +IQ +E               + P + A +   + ++    +  + I    R  
Sbjct: 269 AWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRE 328

Query: 353 ISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYD 412
           +  + +   +L+T +     P         +   NR ++L+      G   V VP+    
Sbjct: 329 LGEVFEGVDVLLTYSAPGTAPAKAL-ASTGDPRYNRLWTLM------GNPCVNVPVLKVG 381

Query: 413 KCPTSVSFIARHGGDRFLLDTVQNMYASLQEQA 445
             P  V  IAR G D   L T     A   E A
Sbjct: 382 GLPIGVQVIARFGNDAHALAT-----AWFLEDA 409

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.0 bits (232), Expect = 7e-21
 Identities = 75/438 (17%), Positives = 130/438 (29%), Gaps = 71/438 (16%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
            L G+  ++ + F  +G+ +  G          +     VV  L   GA     T V + 
Sbjct: 97  LLYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQS 154

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
             S + +N  +    NP   S+ PGGSS G    + +      LG D  G +R PSAFCG
Sbjct: 155 MLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 214

Query: 177 ILGFRPSYGAVSHMGIIPI----STSLDTVGWFARDPKILRHVGHVL------------- 219
           I G +P+   +S  G+       +    ++G  ARD + L      L             
Sbjct: 215 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVP 274

Query: 220 ----LQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV--------- 266
                +  + + R  R      D + +      R +    +  E      +         
Sbjct: 275 PLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPY 334

Query: 267 -LKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDIS 325
            L+  + G  F     S     K +     +  LI      +     +  +   L P ++
Sbjct: 335 ALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLA 394

Query: 326 AEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI--LVTPTTAYPPPKLGGKEMLSE 383
           A +  M   S   +   +      R ++ +  K   +  L+TP                 
Sbjct: 395 AFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRA--- 451

Query: 384 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKC----------------------------- 414
                A S   + +        VP+                                   
Sbjct: 452 ---TGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVG 508

Query: 415 -PTSVSFIARHGGDRFLL 431
            P +V  +A    +   L
Sbjct: 509 LPVAVQCVALPWQEELCL 526

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 5e-11
 Identities = 9/104 (8%), Positives = 26/104 (25%), Gaps = 3/104 (2%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           E  ++ Y+   +  A     +  +   +N       ++ + +     ++    T AI  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 529 KK---VRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPF 569
                         +ER       +     +             
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
            N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI +   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 18/63 (28%), Positives = 24/63 (38%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A +        Y+      AI  Y  AI+L  +    Y N A A  E GS  +AE     
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 524 AIN 526
           A+ 
Sbjct: 297 ALR 299

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 9e-04
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG 512
           + A       +   +  +  +A+  Y EAI+++   A  YSN      E  
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 17/110 (15%), Positives = 31/110 (28%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           +  +  +     +  ++ ++  ++  F T AIK N   A  YSN    Y E G   +A  
Sbjct: 29  EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88

Query: 520 DCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPF 569
               A+ L                           ++      P      
Sbjct: 89  HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 13/105 (12%), Positives = 32/105 (30%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N  +      E+G +  ++     A+  +  A++ +  +   +        E+   L A 
Sbjct: 14  NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 73

Query: 519 ADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563
           +   + + L    +            +  +RQ       W    P
Sbjct: 74  SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 118

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (141), Expect = 1e-10
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 34/102 (33%)

Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNR------------------ 504
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NR                  
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 505 ----------------AAAYLESGSFLQAEADCTKAINLDKK 530
                               LE  S+ +A A+  +A +L K+
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 26/69 (37%), Positives = 39/69 (56%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + A   KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 522 TKAINLDKK 530
            KAI + ++
Sbjct: 62  EKAIEVGRE 70

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
              A  + Q  +A+    EAIK +  +A+  S+        G F +A+    ++I L 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           +G  A   K W  A+  ++        ++    N    Y    +  +AE   T++IN 
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR 65

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 15/109 (13%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------------GNNATYYSNRAAAYLES 511
           A +A     +     ++ +A +    A++++            G +A  ++  A A    
Sbjct: 9   AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 68

Query: 512 GSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSW 560
            SF +A     KA++   +   +  +  +     +  R L +  +    
Sbjct: 69  RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGA 117

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLIC 535
           +D++  +A     +AI+LN  N T +  R          L  E +      +   +    
Sbjct: 55  RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNY-----ITAIIEEQP 109

Query: 536 AEAQQERCLDITRRQLKIFHMHWSW 560
              Q      +    L+       +
Sbjct: 110 KNYQVWHHRRVLVEWLRDPSQELEF 134

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 9e-05
 Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + + I KE+G   +K+ ++ +A+  Y + +      +++ +  A         L+  +  
Sbjct: 11  EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQA----LRLASHL 66

Query: 522 TKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSW 560
             A+   K      A     + L++     K        
Sbjct: 67  NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA 105

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 15/63 (23%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------------NGNNATYYSNRAA 506
           + A I KEKG   +K  ++++A+  Y + +                        + N A 
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72

Query: 507 AYL 509
            YL
Sbjct: 73  CYL 75

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 16/81 (19%)

Query: 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE----------------AI 491
           A KS        + QSA   KE+GN+ +K  +  +AI  Y E                  
Sbjct: 1   AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD 60

Query: 492 KLNGNNATYYSNRAAAYLESG 512
           K      +   N A  Y ++ 
Sbjct: 61  KKKNIEISCNLNLATCYNKNK 81

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 7/60 (11%), Positives = 18/60 (30%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
             K                    + + +++    ++   A Y  +  + +L   S L+ E
Sbjct: 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 330

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 32/69 (46%), Positives = 44/69 (63%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 8   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 67

Query: 522 TKAINLDKK 530
           T+AI LDKK
Sbjct: 68  TRAIELDKK 76

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 10/102 (9%), Positives = 21/102 (20%), Gaps = 5/102 (4%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAE 518
           AE    +   A  D    +A      A++              S         G   ++ 
Sbjct: 12  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 71

Query: 519 ADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSW 560
           A   +   + ++  +                        W  
Sbjct: 72  ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 113

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 0.001
 Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 3/48 (6%)

Query: 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           L++  +  +A  L  +        A  +    +         K +  D
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD 47

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
           +     KEKGN+A        A+  Y+EAIKL+ +N   Y
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLY 40

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 16/63 (25%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEA----------------IKLNGNNATYYSNRA 505
             +E  K  GN  +K + W  AI  YT+                  KL     +   N  
Sbjct: 25  LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84

Query: 506 AAY 508
           A  
Sbjct: 85  ACK 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	573
d2gi3a1	475	Glutamyl-tRNA(Gln) amidotransferase subunit A {The	100.0
d2f2aa1	485	Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta	100.0
d1mt5a_	537	Fatty acid amide hydrolase (oleamide hydrolase) {R	100.0
d1ocka_	412	Malonamidase E2 {Bradyrhizobium japonicum [TaxId:	100.0
d1m22a_	490	Peptide amidase Pam {Stenotrophomonas maltophilia	100.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.58
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.56
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.55
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.47
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.44
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.41
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.38
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.33
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.33
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.25
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.24
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.23
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.22
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.17
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.16
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.15
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.12
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.1
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.09
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.09
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.08
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.07
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.07
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.05
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.03
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.0
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.96
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.87
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.86
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.79
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.79
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.69
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.56
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.5
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.34
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.31
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.28
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.25
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.14
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.13
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.13
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.12
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.95
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.82
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.46
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.09
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.06
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	96.85
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.85
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.46
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.27
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	95.22
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	87.13
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	85.35

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.4e-85  Score=692.92  Aligned_cols=386  Identities=22%  Similarity=0.312  Sum_probs=311.9

Q ss_pred             hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEE
Q 008244           29 NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCI  108 (573)
Q Consensus        29 ~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~  108 (573)
                      ++||.|||||+..++.+++      .+||||||||+|||+|+++|++||+||+.+++  +++.+||++|++||++|||++
T Consensus        35 ~~~~~lna~~~~~~~~a~~------~~gpL~GvPi~vKD~~~~~g~~tt~Gs~~~~~--~~~~~da~~v~~L~~aGaii~  106 (475)
T d2gi3a1          35 RLDPHVKAFISVRENVSVE------KKGKFWGIPVAIKDNILTLGMRTTCASRILEN--YESVFDATVVKKMKEAGFVVV  106 (475)
T ss_dssp             HHHHHHCCEEEECCCCCCC------CCSTTTTCEEEEETTBCCSSSCCCTTCGGGTT--CCCCSCCHHHHHHHHHTCEEE
T ss_pred             HHCCcCCEEEEcCHHHhhh------ccCCCCCCEEEEEcccCCCCCccCccChhhcC--CCCCCCcceeeehhhcCCccc
Confidence            8899999999998876654      35899999999999999999999999999986  489999999999999999999


Q ss_pred             eecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccc
Q 008244          109 GKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVS  188 (573)
Q Consensus       109 gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~  188 (573)
                      ||||||||+++.+|+|.+||+|+||||++++||||||||||+||+|++|+|+|||||||||+||+||||||||||+||||
T Consensus       107 Gktn~~e~~~~~~~~~~~~G~t~nP~~~~~~~GGSSgGsaaavAag~~~~a~GtD~gGSiR~PA~~~Gv~G~kPt~G~i~  186 (475)
T d2gi3a1         107 GKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVS  186 (475)
T ss_dssp             EEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBC
T ss_pred             cccchhhcccccccccchhcccccccccccccCcccccchhhhhhcCcceEeecCCCccchhhhHHhCceeecCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc----------------CCCCceEEEcccchhhcCCChHHHHH
Q 008244          189 HMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----------------QRSPRQIIIADDCFELLKIPADRVVQ  252 (573)
Q Consensus       189 ~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~----------------~~~~~rl~i~~~~~~~~~~~~~~~~~  252 (573)
                      +.|++|+++++|++|||||+++|+..+++++.+.+..+                ..++.|+.+..+.+  ....++++.+
T Consensus       187 ~~g~~~~~~~~d~~GpmaRsv~D~alll~v~~g~d~~d~~s~~~~~~~~~~~~~~~~~~ri~~~~~~~--~~~~~~~v~~  264 (475)
T d2gi3a1         187 RYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAVPEEIY--EHDIEEGVSE  264 (475)
T ss_dssp             CTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTTTTSCCTTCEEEEEGGGG--GSCCCHHHHH
T ss_pred             CCCCCCCCCCCCccCCccCCHHHHHHHhhhhhccccccccccccccccchhccccccccceeeeeccc--cCCCCHHHHH
Confidence            99999999999999999999999999999887643211                23456776655443  2335788999


Q ss_pred             HHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhH------------------HH
Q 008244          253 VVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHN------------------EW  312 (573)
Q Consensus       253 ~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~------------------~~  312 (573)
                      +++++++.|.  |++|++ ++        .|.+.+...       .+..+...+....+.                  .+
T Consensus       265 a~~~a~~~L~~~G~~V~e-v~--------~p~~~~~~~-------~~~~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~  328 (475)
T d2gi3a1         265 RFEEALKLLERLGAKVER-VK--------IPHIKYSVA-------TYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMY  328 (475)
T ss_dssp             HHHHHHHHHHHTTCEEEE-EC--------CTTGGGHHH-------HHHHHHHHHHHTC----------------------
T ss_pred             HHHHHHHHHHHCCCEEEE-eC--------CCchHHHHH-------HHHHHHHHHHHHHHHHhhcchhhhhcccccHHHHH
Confidence            9999999886  777643 22        233322111       111111122221111                  11


Q ss_pred             HHhhCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHH
Q 008244          313 IESVKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQN  387 (573)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~  387 (573)
                      .......+.+.++.++..+....     ..++.++.+.|..++..+.++|+++|+||+||++.++|+++....+...+  
T Consensus       329 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~--  406 (475)
T d2gi3a1         329 MKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYY--  406 (475)
T ss_dssp             --CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTCCCHHHHH--
T ss_pred             HhhhhcccCHHHHHHHHhcchhhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccccchHHHh--
Confidence            22223345677777776664433     33445677888999999999999999999999999999998754322222  


Q ss_pred             hhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244          388 RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (573)
Q Consensus       388 ~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l~  442 (573)
                      .+..||.++|++|+|+||||+|+++|||+||||+|++++|..||++|++||++..
T Consensus       407 ~~~~~t~~~Nl~G~PaisvP~G~s~GlPvGvQlig~~~~D~~LL~~A~~~E~~~~  461 (475)
T d2gi3a1         407 LMDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKNSP  461 (475)
T ss_dssp             TTTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHHCT
T ss_pred             hhhHHHHHHHHHCCCeEEEeCCCCCCCCEeEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            2334899999999999999999999999999999999999999999999997543

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.1e-82  Score=677.70  Aligned_cols=408  Identities=22%  Similarity=0.280  Sum_probs=329.5

Q ss_pred             HhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCC
Q 008244           12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEG   73 (573)
Q Consensus        12 ~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~g   73 (573)
                      .+.+|+++++.++     .    ++|  +.||.+|||++...+.|+++|+       +++..||||||||+|||+|+|+|
T Consensus         7 s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vKD~~~v~g   86 (485)
T d2f2aa1           7 SVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNG   86 (485)
T ss_dssp             CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCBTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCcCeEEEEcccccCC
Confidence            4566677655444     2    343  7899999999998887777653       36788999999999999999999


Q ss_pred             cccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhh
Q 008244           74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA  153 (573)
Q Consensus        74 ~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaa  153 (573)
                      ++||+||.++.+.  ++..|+++|++|+++|||++||||||||+++..+.|.+||+|+||||++|+||||||||||+||+
T Consensus        87 ~~tt~Gs~~~~~~--~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~~~GGSSgGsaaavA~  164 (485)
T d2f2aa1          87 LETTCASKMLEGF--VPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAA  164 (485)
T ss_dssp             BCCCTTCGGGTTC--CCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHT
T ss_pred             CccCCcChhhccC--CccccccccccccccccccccccchhhhcccccccCccccCcCCCCCcccccCCccccchhhHHh
Confidence            9999999999874  78899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-------
Q 008244          154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-------  226 (573)
Q Consensus       154 g~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-------  226 (573)
                      |++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+       
T Consensus       165 g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d~~~~~~~  244 (485)
T d2f2aa1         165 GLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVD  244 (485)
T ss_dssp             TSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTBTTSCCCC
T ss_pred             ccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccccccccccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999887543211       


Q ss_pred             ----------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHH
Q 008244          227 ----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELK  294 (573)
Q Consensus       227 ----------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~  294 (573)
                                ..++.||++..+.+.  ...++++.++++++++.|.  |++|++ ++        .|.+.....      
T Consensus       245 ~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~i~~a~~~a~~~L~~~G~~v~e-v~--------lp~~~~~~~------  307 (485)
T d2f2aa1         245 DVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVVEE-VS--------LPNTKFGIP------  307 (485)
T ss_dssp             CCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEEEE-EC--------CTTGGGHHH------
T ss_pred             ccchhhhhcCCccCCEEEEEccccc--CcCCHHHHHHHHHHHHHHHHCCCEEEE-eC--------CCchhhhHH------
Confidence                      234567777665443  2357889999999999885  776643 22        232211110      


Q ss_pred             HHHHHHHHHHHHhhh------------------HHH-HHhhCCCCCHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHH
Q 008244          295 NVMRLIQRYEFKNNH------------------NEW-IESVKPALDPDISAEIGEM-----LEISETVIENCKSIRNEMR  350 (573)
Q Consensus       295 ~~~~~~~~~e~~~~~------------------~~~-~~~~~~~~~~~~~~~~~~g-----~~~s~~~~~~a~~~r~~~~  350 (573)
                       .+..+...++...+                  .++ .....+.+.+.++.++..+     ..+...++.++++.+..++
T Consensus       308 -~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~  386 (485)
T d2f2aa1         308 -SYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIK  386 (485)
T ss_dssp             -HHHHHHHHHHHHHTTTCSSSSSSCCCSSCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHhhhhhhccccccccCHHHHHHHhhhhhcCHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHH
Confidence             11111111111111                  111 1122334678888777654     3455667888999999999


Q ss_pred             HHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHH
Q 008244          351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFL  430 (573)
Q Consensus       351 ~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~l  430 (573)
                      +.++++|+++|+||+||++.+||++++.......... ...||.++|++|+|+||||+|..+|||+|||++|++++|..|
T Consensus       387 ~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~-~~~~t~~~Nl~G~PaisvP~G~~dGlPvGlQiig~~~~D~~L  465 (485)
T d2f2aa1         387 NDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYA-NDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTL  465 (485)
T ss_dssp             HHHHHHTTTCSEEEEESSSSSCCBTTTSTTCHHHHHG-GGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHHH
T ss_pred             HHHHHHHccCCEEEeCCCCCCCCCcccccCCHHHHhh-hhHHHHHHHHHCCCeEEEECCCCCCCCEeEEEECCCCCHHHH
Confidence            9999999999999999999999999876544332222 234899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 008244          431 LDTVQNMYAS  440 (573)
Q Consensus       431 l~~a~~le~~  440 (573)
                      |++|++||+.
T Consensus       466 L~~A~~~E~~  475 (485)
T d2f2aa1         466 YRVAYQYETQ  475 (485)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999999965

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-82  Score=685.19  Aligned_cols=416  Identities=19%  Similarity=0.214  Sum_probs=329.0

Q ss_pred             chhHHHHhhhhhhHHHHHHH---------Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCc
Q 008244            6 ANLWVLLGLGLAGILLMTKK---------LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGY   74 (573)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~~~---------~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~   74 (573)
                      .+++.+++.+|+++++.++.         ++|  +.||.+|||++..+|++++.+ ++...||||||||+|||+|+++|+
T Consensus        36 ~~i~~ls~~el~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~~~~~a-~~~~~gpL~GvPi~vKD~~~~~g~  114 (537)
T d1mt5a_          36 EALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLS-QAPRQGLLYGVPVSLKECFSYKGH  114 (537)
T ss_dssp             HHHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCSHHHH-TCCTTSTTTTCEEEEETTSCCBTS
T ss_pred             HHHHhCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEcCHHHHHHHH-cCCCCCCcCCCeEEeEcccCcCCC
Confidence            34778889999999776652         244  789999999999887765444 356789999999999999999999


Q ss_pred             ccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhc
Q 008244           75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD  154 (573)
Q Consensus        75 ~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag  154 (573)
                      +||+||..+++  .++.+|+++|++||++|||++||||||||+++.+|+|.+||+|+||||++++||||||||||+||+|
T Consensus       115 ~tt~Gs~~~~~--~~~~~da~~V~~L~~aGaii~gkTn~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaavaag  192 (537)
T d1mt5a_         115 DSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSG  192 (537)
T ss_dssp             BCCSSCGGGSS--CBBSSCCHHHHHHHHTTCEEEEEECCCTTSCCSSCCCTTTCCCCCSSCTTSCCCSSSHHHHHHHGGG
T ss_pred             ccCccChhhcC--CCCCccHHHHHHHHhCCCEEeecccccccccccchhhhhhcccccccccccccCCCcCCcccccccc
Confidence            99999999986  4899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCC----CCCcccccccCHHHHHHHHHHhcCCC-------
Q 008244          155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRHVGHVLLQLP-------  223 (573)
Q Consensus       155 ~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~----~~d~~G~~ar~~~d~~~v~~~~~~~~-------  223 (573)
                      ++|+|+|||||||||+||+||||||||||+||||+.|++|.++    ++|++|||+|+++|+..+++++.+.+       
T Consensus       193 ~~~~a~GtD~gGSiR~PAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~d~~GpmaRsv~D~a~~l~~l~g~d~~d~~~~  272 (537)
T d1mt5a_         193 GSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPT  272 (537)
T ss_dssp             SCSEEEEEESSSTTHHHHHHHTCEEEECCTTSSCCTTCCCSSCCCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHSCTT
T ss_pred             ccccccccccccccchhhhhcCceeeeccccccCCCCCCCcccccccccccCCCccchHHHHHHHHHHhcCCCccccccc
Confidence            9999999999999999999999999999999999999988754    56999999999999999999876531       


Q ss_pred             -----cc----cCCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhh--
Q 008244          224 -----FA----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN--  290 (573)
Q Consensus       224 -----~~----~~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~--  290 (573)
                           +.    ...++.||++..+..  ...+++++.++++++++.|.  |++|++ +++        |.+...+...  
T Consensus       273 ~~~~~~~~~~~~~~k~lRIg~~~~~~--~~~~~p~v~~a~~~a~~~L~~~Ga~Vve-v~~--------~~~~~~~~~~~~  341 (537)
T d1mt5a_         273 VPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGHTLIP-FLP--------NNIPYALEVLSA  341 (537)
T ss_dssp             SCCCCCCHHHHSCCSCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTCEEEE-CCC--------TTHHHHHHTTHH
T ss_pred             cCcchhhhhhhhcccccceeeecccc--cccccHHHHHHHhhhHHhhccccceEEe-cCC--------cchHHHHHHHHH
Confidence                 10    123456777654432  23458899999999999986  777754 111        2211100000  


Q ss_pred             ----hh-HHHHHHH------------H-HHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 008244          291 ----GE-LKNVMRL------------I-QRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSA  352 (573)
Q Consensus       291 ----~~-l~~~~~~------------~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~  352 (573)
                          .. .......            + ...+........+......+.+.+...+..+...+..+|.+++..+..+++.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (537)
T d1mt5a_         342 GGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQS  421 (537)
T ss_dssp             HHHSTTTTHHHHGGGTTCCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSCCBHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence                00 0000000            0 0000001112222333455667777888888889999999999999999999


Q ss_pred             HHhhcC--CCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCcc--------------------
Q 008244          353 ISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY--------------------  410 (573)
Q Consensus       353 ~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~--------------------  410 (573)
                      +.++|+  ++|+||+||++ ++++++.....     ...+.||.+||++|+|++|||+|+                    
T Consensus       422 ~~~~~~~~~~Dvll~Pt~~-pa~~~~~~~~~-----~~~~~~T~~~NllG~PaisvP~g~v~~~~~~~~~~~~~~~~~~~  495 (537)
T d1mt5a_         422 VIAQWKAMNLDVLLTPMLG-PALDLNTPGRA-----TGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIW  495 (537)
T ss_dssp             HHHHHHHTTCSEEEEECCC-SCCCSSCGGGC-----GGGGHHHHHHHHTTCCEEEEEEEECCTTTTTGGGSCCCSSCSHH
T ss_pred             HHHHHhhcCCCEEEeCCCC-CccCcCChhhh-----hcccchHHHHHHhCCCeEEEEcCccccccccccccccccccccc
Confidence            999996  68999999988 55655543211     133568999999999999999997                    


Q ss_pred             ---------C-CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244          411 ---------Y-DKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (573)
Q Consensus       411 ---------~-~glPvGlq~~~~~~~d~~ll~~a~~le~~l  441 (573)
                               + +|||+|||++|++++|+.||++|+.+|++|
T Consensus       496 ~~~~~~~~~~~~GLPvGlQlvg~~~~D~~lL~~A~~lE~~L  536 (537)
T d1mt5a_         496 DIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLM  536 (537)
T ss_dssp             HHHHHHHHSSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCCCCEeEEEECCCCCHHHHHHHHHHHHHHh
Confidence                     3 699999999999999999999999999876

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=100.00  E-value=4e-81  Score=651.95  Aligned_cols=393  Identities=22%  Similarity=0.271  Sum_probs=329.8

Q ss_pred             HhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCc
Q 008244           12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGH   80 (573)
Q Consensus        12 ~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs   80 (573)
                      ++.+|.+++..++     +    ++|  +.||.+|||++...+      ++++.+||||||||+|||+|+|+|++||+||
T Consensus         3 s~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~------~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs   76 (412)
T d1ocka_           3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKS------ARAQASGPLRGIAVGIKDIIDTANMPTEMGS   76 (412)
T ss_dssp             CHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT------CCCCSSSTTTTCEEEEETTBCCSSSCCCTTS
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCcccCChHhhhHH------hcCccCCCcCCCEEEEEcccCCCCCcccccC
Confidence            4566777755554     2    233  889999999986422      2346789999999999999999999999999


Q ss_pred             hhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCcccc
Q 008244           81 PEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSL  160 (573)
Q Consensus        81 ~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~  160 (573)
                      +.|.+.  ++.+|+++|++|+++|||++||||||||+++      .+|.|+|||++.+++||||||+|++||+|++|+|+
T Consensus        77 ~~~~~~--~~~~~a~~V~~L~~aGaii~gkt~~~e~~~~------~~~~~~np~~~~~~~GgSSgG~aaava~g~~~~a~  148 (412)
T d1ocka_          77 EIYRGW--QPRSDAPVVMMLKRAGATIIGKTTTTAFASR------DPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLAL  148 (412)
T ss_dssp             GGGTTC--CCSSCCHHHHHHHHTTCEEEEEECCCGGGSS------CCCSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEE
T ss_pred             hhhhCC--CCcceeeEEeeecccccccchhhhhhhhhcc------ccccccccccccccCCCcCCCceeeeecccccccC
Confidence            999864  8999999999999999999999999999976      47889999999999999999999999999999999


Q ss_pred             ccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc---CCCCceEEEcc
Q 008244          161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---QRSPRQIIIAD  237 (573)
Q Consensus       161 GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---~~~~~rl~i~~  237 (573)
                      |||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+   +....++.+..
T Consensus       149 GsDtgGSiR~PAa~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~~~~~~~~~~~~~  228 (412)
T d1ocka_         149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVR  228 (412)
T ss_dssp             EEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECC
T ss_pred             ccccccccccchhhhcchhcccccccccccccccccchhcccccccccHHHHHHHHHhhcCCCcccccCCcccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999987655332   33445666654


Q ss_pred             cchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHh
Q 008244          238 DCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES  315 (573)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~  315 (573)
                      +.+  ....++++.+.++++++.|.  |+++++.         ..+....      .....+..+..++....+..++..
T Consensus       229 ~~~--~~~~~~~v~~~~~~a~~~L~~~G~~v~e~---------~~~~~~~------~~~~~~~~~~~~e~~~~~~~~~~~  291 (412)
T d1ocka_         229 QEF--AGAVEPAAEQGLQAAIKAAERAGASVQAI---------DLPEAVH------EAWRIHPIIQDFEAHRALAWEFSE  291 (412)
T ss_dssp             CGG--GCCCCHHHHHHHHHHHHHHHHTTCEEEEC---------CCCHHHH------HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             ccc--cccchhHHHHHHHHHHHHHHHhhhccccc---------cccchhh------hhhhhhhhhhhHHHHHHHHHhhcc
Confidence            433  23458899999999999986  6665321         1111110      022233344455667777777888


Q ss_pred             hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhcc
Q 008244          316 VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI  395 (573)
Q Consensus       316 ~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~  395 (573)
                      ..+.+.+.++.++..+..++..+|.++++.|..++++|.++|+++|+||+||+|.++|.++.....       ...||.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~~~~-------~~~~t~~  364 (412)
T d1ocka_         292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRL  364 (412)
T ss_dssp             SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CCTTTHH
T ss_pred             ccccchhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHcCCCEEEeCCCCCCCccccccccC-------ChHHhHH
Confidence            888999999999999999999999999999999999999999999999999999999987543211       1237999


Q ss_pred             ccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244          396 ASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (573)
Q Consensus       396 ~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l~  442 (573)
                      +|++|+|+||||+|..+|||+||||+|++++|..|+++|+.+|+++.
T Consensus       365 ~nl~G~PaisvP~g~~~GlPvGlQiig~~~~D~~lL~~A~~~E~alg  411 (412)
T d1ocka_         365 WTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA  411 (412)
T ss_dssp             HHHHCCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCeEEEeccCCCCceEeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999889999999999999999999999999998764

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

Probab=100.00  E-value=2.6e-79  Score=653.45  Aligned_cols=405  Identities=23%  Similarity=0.266  Sum_probs=302.3

Q ss_pred             hhHHHHhhhhhhHHHHHH-----H----Hhh-----hhcCcccceeeccccCCCCCC-------CCCCCCCCCCCceeee
Q 008244            7 NLWVLLGLGLAGILLMTK-----K----LKK-----NIKQDFGAFIEKLQLLPPPQP-------LPPKAPHPLTGLSFAV   65 (573)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~-----~----~~~-----~~~~~~na~~~~~~~~~~~~a-------~~~~~~gpL~Gvp~~v   65 (573)
                      ++..+|+.+|+++++.++     +    ++|     ++||.||||++..++ ++++|       ++++.+||||||||+|
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~-a~~~A~~~d~~~~~g~~~gpL~GvP~~v   81 (490)
T d1m22a_           3 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLL   81 (490)
T ss_dssp             TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEE
T ss_pred             CcccCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhCcCCcEEEEEEcCHH-HHHHHHHHHHHHHCCCCCCCcCCCEEEE
Confidence            455678889988866655     2    222     568999999997654 55554       2477899999999999


Q ss_pred             ecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCC-----CCCCCCCCCCCCCCCCC
Q 008244           66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGT-----NKHYDTPTNPAAPSQMP  140 (573)
Q Consensus        66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~-----~~~~G~t~NP~~~~~~~  140 (573)
                      ||+|+|+|++||+||+.+.+   .+++||++|++|+++|||++||||||||+++.+|+     |++||+|+||||++|+|
T Consensus        82 KD~~~v~g~~tt~Gs~~~~~---~~~~da~~v~~L~~~Gai~~gkTn~~e~~~~~~t~~~~~~n~~~G~t~NP~~~~~~~  158 (490)
T d1m22a_          82 KDNINAAPMATSAGSLALQG---FRPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSP  158 (490)
T ss_dssp             ETTBCCTTSCCCTTCGGGTT---CCCCCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCC
T ss_pred             EcccccCCCccCCcchhhcc---cCCccchhhhhhhcccchhhcccccchhhhccccccccccccCCCCccCccccccCC
Confidence            99999999999999999975   24579999999999999999999999999988775     99999999999999999


Q ss_pred             CCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhc
Q 008244          141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL  220 (573)
Q Consensus       141 GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~  220 (573)
                      |||||||||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|.++++|++|||+|+++|+..+++++.
T Consensus       159 GGSSgGsaaavA~g~~~~aiGsD~gGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gp~ar~v~D~~~~~~vl~  238 (490)
T d1m22a_         159 CGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIA  238 (490)
T ss_dssp             CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHhhhhccccccccCCccccceecceeEEeeccCccccCCcccccCcccCCCCccccchhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCccc---------------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCcccc
Q 008244          221 QLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFD  277 (573)
Q Consensus       221 ~~~~~~---------------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~  277 (573)
                      +.+..+                     ...+.++.+......    .++.+...+.++++.+.  |+++++ ++      
T Consensus       239 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~a~~~l~~~g~~v~e-v~------  307 (490)
T d1m22a_         239 GRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGAVVVP-VE------  307 (490)
T ss_dssp             CCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTCEEEE-EC------
T ss_pred             cccccCcccchhccccccchhhhccccccccccccccccccc----cccchhhhhhhhHHHHhhcccceee-cc------
Confidence            643211                     112233333322211    13456666777777665  766643 22      


Q ss_pred             ccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHh---------------------hCCCCCHHHHHHHHHhhcCCH
Q 008244          278 SKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES---------------------VKPALDPDISAEIGEMLEISE  336 (573)
Q Consensus       278 ~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~s~  336 (573)
                        .|.+....       .....+...++...+..++..                     ....+.+.+............
T Consensus       308 --~p~~~~~~-------~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (490)
T d1m22a_         308 --LPNQGAWA-------EAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLAD  378 (490)
T ss_dssp             --CTTTTTTH-------HHHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCTTC
T ss_pred             --CCchHHHH-------HHHHHHHHHHHHhhhhhHhhhcccccchHHHHHHHHHhhhhccccccchhhhHHHHHhhccch
Confidence              22222111       111112222333333333322                     223444555555555555555


Q ss_pred             HHHHHHHHHHHHHH--HHHHh--hcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCC
Q 008244          337 TVIENCKSIRNEMR--SAISS--LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYD  412 (573)
Q Consensus       337 ~~~~~a~~~r~~~~--~~~~~--~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~  412 (573)
                      ..+..+++.+.++.  ..++.  .|+++|+||+||++.++|.......       ....+|.++|++|+|+||||+|+.+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~li~Pt~~~~~p~~~~~~~-------~~~~~t~~~Nl~G~PaisvP~G~~~  451 (490)
T d1m22a_         379 PAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDD-------FPGESYSAAAVAGYPSLTVPMGQID  451 (490)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---C-------CTTCCHHHHHHHTCCEEEEEEEEET
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCCccCCcCccccc-------chHHHHHHHHHhCCCEEEEECCCCC
Confidence            55555444333322  23333  4679999999999988876543211       1234688999999999999999999


Q ss_pred             CCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244          413 KCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (573)
Q Consensus       413 glPvGlq~~~~~~~d~~ll~~a~~le~~l~  442 (573)
                      |||+|||++|++++|..||++|+.+|++.+
T Consensus       452 GLPvGlQlig~~~~D~~LL~~A~~lE~~~~  481 (490)
T d1m22a_         452 GLPVGLLFMGTAWSEPKLIEMAYAYEQRTR  481 (490)
T ss_dssp             TEEEEEEEECSTTCHHHHHHHHHHHHHHHC
T ss_pred             CCceeEEEECCCCCHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999997654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.8e-16  Score=127.91  Aligned_cols=104  Identities=27%  Similarity=0.335  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQE  541 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~  541 (573)
                      +++.++++|+.+++.|+|++|+.+|+++|+++|+++.+|+++|.||.++|++++|+.+|+++++++|++ .+++.++.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            467789999999999999999999999999999999999999999999999999999999999999998 5999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      ..++.+++|++.|+++.+++|..++
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~  106 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQ  106 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999997543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4e-15  Score=130.84  Aligned_cols=107  Identities=36%  Similarity=0.462  Sum_probs=101.2

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~  537 (573)
                      ++-+.++.+.++|+.++++|+|++|+.+|+++|+++|+++.+|+++|.||+.+|++++|+.+|+++++++|++ .+++.+
T Consensus         5 ~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~   84 (159)
T d1a17a_           5 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   84 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHH
Confidence            3446789999999999999999999999999999999999999999999999999999999999999999999 599999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      |.++..++.+++|++.|+++..++|...
T Consensus        85 g~~~~~~g~~~eA~~~~~~a~~~~p~~~  112 (159)
T d1a17a_          85 AASNMALGKFRAALRDYETVVKVKPHDK  112 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            9999999999999999999999998644

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.6e-15  Score=136.09  Aligned_cols=100  Identities=28%  Similarity=0.368  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      ++.+.++|+.+++.|+|++|+..|+++|+++|+++.+|+|+|.||+++|+|++|+.+|++|++++|++ .+++.+|.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999998 58999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~  563 (573)
                      .++.+++|+..|+++..++|.
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999988874

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-14  Score=122.85  Aligned_cols=102  Identities=25%  Similarity=0.386  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--------RL  533 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--------~~  533 (573)
                      +.+..++++|+.+++.|+|++|+.+|+++|+++|+++.+|+|+|.||.++|+|++|+.+|+++++++|++        ..
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999999875        36


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          534 ICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ++.++..+..++.+++|++.|+++...++.
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            777888999999999999999998876653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.47  E-value=1.4e-13  Score=119.78  Aligned_cols=106  Identities=21%  Similarity=0.210  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------ATYYSNRAAAYLESGSFLQAEADCTKA  524 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----------------~~~~~n~a~~~~~l~~~~~Al~~~~~a  524 (573)
                      .+.+..+++.|+.+|++|+|++|+..|+++|++.+..                ..+|+|+|.||+++++|++|+.+|+++
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            3557789999999999999999999999999876543                368899999999999999999999999


Q ss_pred             HHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          525 INLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       525 l~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      |+++|++ ++++++|.++..++.+++|+..|+++.+++|...+
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  136 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD  136 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999998 69999999999999999999999999999997543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.44  E-value=2.7e-13  Score=119.99  Aligned_cols=105  Identities=21%  Similarity=0.287  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---------------~~~~~n~a~~~~~l~~~~~Al~~~~~al~  526 (573)
                      +.++.+.++|+.+++.|+|++|+..|++||...+..               ..+|.|+|.||+++++|++|+.+|+++++
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            568889999999999999999999999999865442               47799999999999999999999999999


Q ss_pred             hCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          527 LDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       527 l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      ++|++ ++++.++.++..++.+++|++.|.++.+++|..++
T Consensus        93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            99998 59999999999999999999999999999997653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.9e-13  Score=118.03  Aligned_cols=104  Identities=19%  Similarity=0.237  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---------------~~~~~n~a~~~~~l~~~~~Al~~~~~al~  526 (573)
                      +.+..+++.|+.+|++|+|++|+..|+++|++.|..               ..+|.|+|.||+++|+|++|+.+|+++|+
T Consensus        11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence            347788999999999999999999999999997754               47889999999999999999999999999


Q ss_pred             hCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          527 LDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       527 l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++|++ .+++.+|.++..++.+++|+..|+.+.+++|..+
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~  130 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  130 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            99998 5999999999999999999999999999998643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.40  E-value=1.8e-12  Score=106.16  Aligned_cols=94  Identities=15%  Similarity=-0.004  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~  542 (573)
                      ...++++|..++++|++++|+..|+++|+++|+++.+|+++|.||.+++++++|+.+++++++++|++ .+++.++.++.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            34467899999999999999999999999999999999999999999999999999999999999998 58999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 008244          543 CLDITRRQLKIFHMH  557 (573)
Q Consensus       543 ~~~~~~~al~~~~~~  557 (573)
                      .++.+++|++.|++.
T Consensus        96 ~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          96 NEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHH
Confidence            999999999999874

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=1.4e-12  Score=123.37  Aligned_cols=106  Identities=10%  Similarity=0.028  Sum_probs=100.5

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~  537 (573)
                      .+++.+..++++|..|++.|+|++|++.|+++|+++|+++.+|+++|.||.++|++++|+.+|+++++++|++ .+++.+
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999999999998 588999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +.++..++.+++|++.|+.+.+.+|..
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhcccc
Confidence            999999999999999999999998853

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.3e-12  Score=115.50  Aligned_cols=100  Identities=15%  Similarity=0.058  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------------
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV------------  531 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~------------  531 (573)
                      +..++++|.++++.|+|++|+++|++||+++|+++.+|+|+|.||.++|+|++|+.+|++|++..+.+            
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~  115 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  115 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhc
Confidence            56899999999999999999999999999999999999999999999999999999999999876542            


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          532 -----RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       532 -----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                           ..++.++.++..++.+++|.+.|..+..+.|.
T Consensus       116 ~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_         116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence                 35678899999999999999999999988874

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.33  E-value=1.5e-12  Score=115.22  Aligned_cols=103  Identities=22%  Similarity=0.264  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----------------NGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~----------------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~  526 (573)
                      .+..+.+.|+.+++.|+|++|++.|+++|+.                +|....+|.|||.||.++|+|++|+.+|++||+
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            3556778888888999999999999888854                455677888899999999999999999999999


Q ss_pred             hCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          527 LDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       527 l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++|++ .+++.+|.++..++.+++|++.|.++..++|...
T Consensus       106 ~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~  145 (169)
T d1ihga1         106 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  145 (169)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            99888 4888888888888999999999998888888643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.25  E-value=5.1e-11  Score=105.10  Aligned_cols=92  Identities=17%  Similarity=0.192  Sum_probs=80.2

Q ss_pred             cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      .++..+..+.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++. ....+
T Consensus        72 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l  151 (169)
T d1ihga1          72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  151 (169)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999985 44455


Q ss_pred             HHHHHHHHHHHHH
Q 008244          538 AQQERCLDITRRQ  550 (573)
Q Consensus       538 ~~~~~~~~~~~~a  550 (573)
                      ..+...+....+.
T Consensus       152 ~~~~~~l~~~~~~  164 (169)
T d1ihga1         152 LKVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.9e-11  Score=95.46  Aligned_cols=80  Identities=18%  Similarity=0.138  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LIC  535 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~  535 (573)
                      ++..+++|..++++|+|++|+..|++|+++.|.+       ..+|.|+|.||.++|++++|+..|+++|+++|++. ++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5678899999999999999999999999986643       68999999999999999999999999999999995 555


Q ss_pred             HHHHHHHH
Q 008244          536 AEAQQERC  543 (573)
Q Consensus       536 ~~~~~~~~  543 (573)
                      .++..+..
T Consensus        85 Nl~~~~~~   92 (95)
T d1tjca_          85 NLKYFEYI   92 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.7e-11  Score=109.31  Aligned_cols=98  Identities=16%  Similarity=0.108  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE  541 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~  541 (573)
                      ++..++++|..++.+|+|++|++.|++   +.+.++.+|+|+|.||+++|+|++|+++|++|++++|++. +++.+|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            356777899999999999999999986   4667899999999999999999999999999999999995 999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      ..++.+++|++.|+++....+.
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HhhccHHHHHHHHHHHHHhCcc
Confidence            9999999999999999876553

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7.1e-11  Score=97.23  Aligned_cols=73  Identities=15%  Similarity=0.133  Sum_probs=70.5

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      +|..+..|.++|.++.+.|+|++|+..|+++|+++|+++.+|+++|.||..+|++++|+.+|+++++++|++.
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~  105 (117)
T d1elwa_          33 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP  105 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            3477899999999999999999999999999999999999999999999999999999999999999999996

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.17  E-value=3.1e-11  Score=105.01  Aligned_cols=101  Identities=15%  Similarity=0.053  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      +..+...|+.+++.|+|++|++.|+++|++.|+.            +.+|+|+|.||.++|+|++|+.+|++++++.|+.
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            4445566999999999999999999999998764            4789999999999999999999999999986531


Q ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          532 ------------RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       532 ------------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                                  .+++.+|.++..++++++|++.|.++..+.|..
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                        367889999999999999999999999887643

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4e-10  Score=98.04  Aligned_cols=95  Identities=16%  Similarity=0.082  Sum_probs=79.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~  538 (573)
                      +|..+..|.++|..+++.|++++|+..|+++|+++|++..+|.++|.||..+|+|++|+.+++++++++|++. ......
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~  119 (159)
T d1a17a_          40 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  119 (159)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            4577999999999999999999999999999999999999999999999999999999999999999999984 333333


Q ss_pred             HHH--HHHHHHHHHHHHH
Q 008244          539 QQE--RCLDITRRQLKIF  554 (573)
Q Consensus       539 ~~~--~~~~~~~~al~~~  554 (573)
                      ++.  .....+++++...
T Consensus       120 ~~~~~~~~~~~~~a~~~~  137 (159)
T d1a17a_         120 ECNKIVKQKAFERAIAGD  137 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCc
Confidence            333  3334566665543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.4e-11  Score=117.75  Aligned_cols=118  Identities=8%  Similarity=-0.060  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 008244          437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL  515 (573)
Q Consensus       437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~  515 (573)
                      +++++....+++...|         +....|..+|.++.+.+ ++++|+..|+++|+++|++..+|++||.++.++|+++
T Consensus        59 ~~~Al~~~~~ai~lnP---------~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~  129 (315)
T d2h6fa1          59 SERAFKLTRDAIELNA---------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS  129 (315)
T ss_dssp             CHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred             hHHHHHHHHHHHHHCC---------CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHH
Confidence            3444555555544444         77888888888888865 4888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244          516 QAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP  563 (573)
Q Consensus       516 ~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  563 (573)
                      +|+.+++++++++|++ .++..++.++..++.+++|++.|+++.+++|.
T Consensus       130 eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         130 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc
Confidence            8888888888888887 47788888888888888888888888888875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.12  E-value=7.1e-10  Score=95.79  Aligned_cols=69  Identities=20%  Similarity=0.183  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      ...+.++|..+++.++|++|++.|+++|+++|++..+|+++|.||..+|+|++|+.+|+++++++|++.
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            456789999999999999999999999999999999999999999999999999999999999999985

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.5e-11  Score=99.63  Aligned_cols=98  Identities=10%  Similarity=-0.041  Sum_probs=77.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCc---HHHHHHHHHH
Q 008244          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKV---RLICAEAQQE  541 (573)
Q Consensus       468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~---~~~~Al~~~~~al~l~p~~---~~~~~~~~~~  541 (573)
                      .++.+.+...+++++|.+.|+++|+++|+++.+++|+|.|+++.+   ++++|+..|+++++.+|+.   .+++.+|.++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            356777888888888888888888888888888888888887644   4456888888888888764   2677888888


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ..++.+++|++.|+++++++|...
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCH
Confidence            888888888888888888888643

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.09  E-value=5.3e-10  Score=95.61  Aligned_cols=110  Identities=11%  Similarity=0.057  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhcCCCHHHHH
Q 008244          433 TVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK----------DKQWLKAISFYTEAIKLNGNNATYYS  502 (573)
Q Consensus       433 ~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~~~~~~Ai~~y~~ai~~~p~~~~~~~  502 (573)
                      -...|+++...........|         +++..+.++|.+++.          .+++++|+..|+++|+++|+++.+|+
T Consensus         9 r~~~fe~A~~~~e~al~~~P---------~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~   79 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNP---------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   79 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCC---------cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence            34457777777666666555         789999999999985          45668999999999999999999999


Q ss_pred             HHHHHHHHcCC-----------HHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHH
Q 008244          503 NRAAAYLESGS-----------FLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQL  551 (573)
Q Consensus       503 n~a~~~~~l~~-----------~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al  551 (573)
                      |+|.+|..+|+           |++|++.|++|++++|++. .+..++......+.+.+..
T Consensus        80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988764           7999999999999999996 4444455555555555543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.5e-10  Score=113.03  Aligned_cols=105  Identities=13%  Similarity=0.038  Sum_probs=99.4

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKVR-LICAE  537 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~p~~~-~~~~~  537 (573)
                      +|+..+.+...|..+.+++++++|++.|+++|+++|++..+|++||.|+..+++ +++|+.+++++++++|++. ++..+
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            578899999999999999999999999999999999999999999999999985 9999999999999999984 88999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          538 AQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       538 ~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      +.++..++.+++|+..|.++.+++|..
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcc
Confidence            999999999999999999999999863

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.08  E-value=8.1e-10  Score=97.05  Aligned_cols=82  Identities=16%  Similarity=0.106  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE  541 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~  541 (573)
                      ....+.++|.++++.++|.+|+..|+++|+++|++..+|+++|.||..+|+|++|+.+|+++++++|++. ....++.+.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3556788999999999999999999999999999999999999999999999999999999999999995 444444444


Q ss_pred             HHH
Q 008244          542 RCL  544 (573)
Q Consensus       542 ~~~  544 (573)
                      ..+
T Consensus       143 ~~~  145 (168)
T d1kt1a1         143 KKA  145 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.6e-10  Score=108.19  Aligned_cols=103  Identities=14%  Similarity=0.098  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~  542 (573)
                      +..+..+|..+...|++++|+..|+++++.+|+++.+|+++|.+|.++|++++|++.|+++++++|++. +++.+|.++.
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  251 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  251 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            677889999999999999999999999999999999999999999999999999999999999999984 8899999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      .++.+++|++.|+++.+++|....
T Consensus       252 ~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         252 NLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             HCCCHHHHHHHHHHHHHhCCcChh
Confidence            999999999999999998886544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.1e-09  Score=96.47  Aligned_cols=81  Identities=22%  Similarity=0.163  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~  542 (573)
                      ...+.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.||+.+|+|++|+.+|+++++++|++. ....++.+..
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            445778999999999999999999999999999999999999999999999999999999999999985 3334444444


Q ss_pred             HH
Q 008244          543 CL  544 (573)
Q Consensus       543 ~~  544 (573)
                      .+
T Consensus       142 ~~  143 (170)
T d1p5qa1         142 RI  143 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.05  E-value=2.8e-10  Score=97.39  Aligned_cols=94  Identities=12%  Similarity=0.016  Sum_probs=80.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244          472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----------GSFLQAEADCTKAINLDKKV-RLICAEAQQ  540 (573)
Q Consensus       472 ~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l----------~~~~~Al~~~~~al~l~p~~-~~~~~~~~~  540 (573)
                      ..+-+.+.|++|++.|+++|+++|+++.+|+++|.++..+          +++++|+..|++|++++|++ .+++.+|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456678899999999999999999999999999999854          55689999999999999998 477888877


Q ss_pred             HHHH-----------HHHHHHHHHHhhccccCCCCC
Q 008244          541 ERCL-----------DITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       541 ~~~~-----------~~~~~al~~~~~~~~~~~~~~  565 (573)
                      +..+           +.+++|.+.|+++..++|...
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~  120 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  120 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH
Confidence            6554           457999999999999999653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=4.1e-10  Score=101.63  Aligned_cols=86  Identities=19%  Similarity=0.079  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 008244          437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ  516 (573)
Q Consensus       437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~  516 (573)
                      +++++..........         |..+..|.++|.+|++.|+|++|+..|++||+++|++..+|+++|.||+++|+|++
T Consensus        20 ~~~Ai~~~~kal~~~---------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~   90 (201)
T d2c2la1          20 YPEAAACYGRAITRN---------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE   90 (201)
T ss_dssp             HHHHHHHHHHHHHHC---------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhC---------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence            455555555554443         36789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCcCc
Q 008244          517 AEADCTKAINLDKKV  531 (573)
Q Consensus       517 Al~~~~~al~l~p~~  531 (573)
                      |+.+|++|++++|++
T Consensus        91 A~~~~~~al~l~p~~  105 (201)
T d2c2la1          91 AIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCccc
Confidence            999999999999864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=9.1e-10  Score=107.16  Aligned_cols=102  Identities=13%  Similarity=0.158  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER  542 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~  542 (573)
                      ....+++|..+++.|+|++|+..|+++|+.+|+++.+|+++|.||..+|++++|+..|+++++++|++. .++.++.++.
T Consensus        19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc
Confidence            334578999999999999999999999999999999999999999999999999999999999999984 7888899999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCC
Q 008244          543 CLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       543 ~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      .++.+++|++.|.....+.|...
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             ccccccccccchhhHHHhccchH
Confidence            99999999999999998888643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.5e-09  Score=89.52  Aligned_cols=81  Identities=11%  Similarity=0.009  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHH
Q 008244          462 QSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LIC  535 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~---~~~~~Ai~~y~~ai~~~p~~--~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~  535 (573)
                      ..++.+++.|..+++.   +++++|+..|+++++.+|++  ..+|+++|.||.++|+|++|+++|+++|+++|++. +..
T Consensus        31 ~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~  110 (122)
T d1nzna_          31 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  110 (122)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHH
Confidence            6789999999999874   45678999999999998765  56999999999999999999999999999999985 444


Q ss_pred             HHHHHHH
Q 008244          536 AEAQQER  542 (573)
Q Consensus       536 ~~~~~~~  542 (573)
                      .+..+..
T Consensus       111 l~~~I~~  117 (122)
T d1nzna_         111 LERLIDK  117 (122)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.4e-09  Score=107.48  Aligned_cols=97  Identities=8%  Similarity=0.040  Sum_probs=90.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHH
Q 008244          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDI  546 (573)
Q Consensus       468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~  546 (573)
                      +++|+.+++.|+|++|++.|+++++.+|+++.++.++|.+|+++|++++|+..|+++++++|++. +++.++.++..++.
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            46899999999999999999999999999999999999999999999999999999999999984 88889999999999


Q ss_pred             HHHHHHHHhhccccCCCC
Q 008244          547 TRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       547 ~~~al~~~~~~~~~~~~~  564 (573)
                      +++|++.|......+|..
T Consensus        83 ~~~A~~~~~~~~~~~~~~  100 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDF  100 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             cccccccccccccccccc
Confidence            999999999988877754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.3e-09  Score=104.77  Aligned_cols=105  Identities=16%  Similarity=0.071  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ  539 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~  539 (573)
                      |+.+..+..+|..+.+.|++++|++.|+++++..|.+...+..++.+|.++|++++|+..|+++++++|++. +++.+|.
T Consensus       268 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  347 (388)
T d1w3ba_         268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS  347 (388)
T ss_dssp             SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            355788999999999999999999999999999999999999999999999999999999999999999984 8888999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          540 QERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       540 ~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                      ++..++.+++|++.|+++.+++|...
T Consensus       348 ~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         348 VLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.3e-08  Score=95.29  Aligned_cols=72  Identities=15%  Similarity=0.045  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      |+.+..+.++|..+.+.|++++|++.|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++.
T Consensus        68 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_          68 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH
Confidence            366889999999999999999999999999999999999999999999999999999999999999999874

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=1.9e-08  Score=88.87  Aligned_cols=98  Identities=12%  Similarity=-0.017  Sum_probs=87.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHcCCHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------------ATYYSNRAAAYLESGSFLQA  517 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----------------------~~~~~n~a~~~~~l~~~~~A  517 (573)
                      +-...+.+.+.|+.+...|++++|++.|++||++.+.+                      ..++.+++.++.++|++++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            44668889999999999999999999999999987643                      26889999999999999999


Q ss_pred             HHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244          518 EADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMH  557 (573)
Q Consensus       518 l~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~  557 (573)
                      +.+|+++++++|.+. .+..++.++...+++.+|++.|++.
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999984 7888888888889999998888876

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.79  E-value=1.1e-08  Score=82.99  Aligned_cols=65  Identities=14%  Similarity=-0.019  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al  525 (573)
                      |+.+..|..+|..+.+.+++++|+..|+++|+++|++..+|+++|.+|..+|++++|++.+++.|
T Consensus        47 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          47 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            36789999999999999999999999999999999999999999999999999999999999976

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=8.4e-08  Score=79.59  Aligned_cols=93  Identities=10%  Similarity=0.162  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHH
Q 008244          436 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------TYYSNRAAAY  508 (573)
Q Consensus       436 ~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~-------~~~~n~a~~~  508 (573)
                      .+++++......+..         +|+.+..+.++|.++++.|+|++|++.|+++|+++|++.       .+|.++|.++
T Consensus        19 ~y~~Ai~~y~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~   89 (128)
T d1elra_          19 DFDTALKHYDKAKEL---------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (128)
T ss_dssp             CHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh---------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence            345555555444443         346788999999999999999999999999999998763       5788888999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Q 008244          509 LESGSFLQAEADCTKAINLDKKVRLICAE  537 (573)
Q Consensus       509 ~~l~~~~~Al~~~~~al~l~p~~~~~~~~  537 (573)
                      ..++++++|+.+|++++..+++.......
T Consensus        90 ~~~~~~~~A~~~~~kal~~~~~~~~~~~l  118 (128)
T d1elra_          90 FKEEKYKDAIHFYNKSLAEHRTPDVLKKC  118 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            99999999999999999998876444333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.56  E-value=2e-07  Score=80.09  Aligned_cols=95  Identities=11%  Similarity=-0.064  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhhhhcCCC---CCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----------CHHHHH
Q 008244          437 MYASLQEQADIATKSKLS---TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-----------NATYYS  502 (573)
Q Consensus       437 le~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-----------~~~~~~  502 (573)
                      +++++....+.....+..   ......+..+..|.++|.++.+.|+|++|++.|+++|++.|.           ...+|+
T Consensus        25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~  104 (156)
T d2hr2a1          25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY  104 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHh
Confidence            555555555554333321   222234456788999999999999999999999999987542           246899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244          503 NRAAAYLESGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       503 n~a~~~~~l~~~~~Al~~~~~al~l~p~~  531 (573)
                      |+|.+|..+|++++|+.+|++|+++.|+.
T Consensus       105 ~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         105 SRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            99999999999999999999999998764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.50  E-value=1.5e-07  Score=88.33  Aligned_cols=82  Identities=17%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHH
Q 008244          471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRR  549 (573)
Q Consensus       471 g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~  549 (573)
                      +..++++|++++|+..|+++|+.+|+++.++.+++.+|...|++++|++.++++++++|++. ....++.+....+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            45678899999999999999999999999999999999999999999999999999999973 33344444444444444


Q ss_pred             HHH
Q 008244          550 QLK  552 (573)
Q Consensus       550 al~  552 (573)
                      ++.
T Consensus        83 a~~   85 (264)
T d1zbpa1          83 FAQ   85 (264)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=7.6e-07  Score=84.86  Aligned_cols=106  Identities=9%  Similarity=-0.057  Sum_probs=90.9

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCc-
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKV-  531 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~-l~~~~~Al~~~~~al~l~p~~-  531 (573)
                      .+..+..+.+.|+.|.+.+++++|++.|++++++.+..      ..++.++|.+|.. ++++++|++.|++|+++.+.. 
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~  152 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34568889999999999999999999999999987654      6889999999865 799999999999999886432 


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244          532 ------RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK  565 (573)
Q Consensus       532 ------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~  565 (573)
                            ..+..++.++..++.+++|++.|++.....+...
T Consensus       153 ~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence                  3567778999999999999999999888777544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=3.6e-06  Score=67.50  Aligned_cols=69  Identities=7%  Similarity=0.002  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244          464 AEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR  532 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~---~~~~Ai~~y~~ai~~~p~~~-~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~  532 (573)
                      .+..++.|..+.+..   +.+++|..++++++.+|.+. .+++++|.+|+++|+|++|+.+++++|+++|++.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            678889999998764   45789999999999998775 8999999999999999999999999999999996

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.5e-07  Score=92.36  Aligned_cols=78  Identities=18%  Similarity=0.099  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE  541 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~  541 (573)
                      ...+..+|..+...++|++|+.+|++|++++|++...|+++|.+|...|++.+|+.+|.+||.++|.+. +...++...
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999998885 555555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=7.7e-07  Score=84.80  Aligned_cols=102  Identities=11%  Similarity=0.124  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG------NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p------~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---  531 (573)
                      ++.++.|.+.|+.+...++|++|+++|.+|+++..      .....|.++|.||.+++++++|+.+|++++++.++.   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            45577899999999999999999999999999742      236899999999999999999999999999987654   


Q ss_pred             ----HHHHHHHHHHHH-HHHHHHHHHHHhhccccCC
Q 008244          532 ----RLICAEAQQERC-LDITRRQLKIFHMHWSWSP  562 (573)
Q Consensus       532 ----~~~~~~~~~~~~-~~~~~~al~~~~~~~~~~~  562 (573)
                          ..+...+..+.. ++.+++|++.|.++..+.+
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence                255555666544 4788999999988876543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=7.3e-06  Score=79.35  Aligned_cols=104  Identities=7%  Similarity=0.007  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHHHH----------HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhC
Q 008244          461 KQSAEIAKEKGNQ----------AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADCTKAINLD  528 (573)
Q Consensus       461 ~~~~~~~~~~g~~----------~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~--~~~Al~~~~~al~l~  528 (573)
                      |+....|..++..          +...+++++|+..|+++++.+|++..+|+++|.++..+++  +++|+..++++++++
T Consensus        60 P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  139 (334)
T d1dcea1          60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD  139 (334)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC
Confidence            4555555544444          4445668999999999999999999999999999988875  899999999999999


Q ss_pred             cCcH-H-HHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          529 KKVR-L-ICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       529 p~~~-~-~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      |++. . ....+......+.+++|+..++.+...+|..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~  177 (334)
T d1dcea1         140 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN  177 (334)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC
T ss_pred             chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence            9874 3 3456678888899999999999999999854

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.6e-06  Score=85.81  Aligned_cols=103  Identities=9%  Similarity=-0.097  Sum_probs=70.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA  538 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~  538 (573)
                      +++....+.+.|..+.+.+++++|+..|.++++.++  ..++.++|.++..+++|++|+.+|++|++++|++ ..++.+|
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg  193 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA  193 (497)
T ss_dssp             ---------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHH
T ss_pred             ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            356678899999999999999999999999999876  4688999999999999999999999999999999 6899999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                      .++...+.+.+|+..|.++...+|+.
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~~~~~  219 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSSBCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999988864

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5.1e-06  Score=64.40  Aligned_cols=51  Identities=10%  Similarity=0.032  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES  511 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l  511 (573)
                      .+.++.+.++|..+++.|+|++|++.|+++|+++|+++.++.|++.+...+
T Consensus        43 ~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            456889999999999999999999999999999999999999998776554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.13  E-value=4.3e-06  Score=73.19  Aligned_cols=70  Identities=10%  Similarity=0.011  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCcCc
Q 008244          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA-------INLDKKV  531 (573)
Q Consensus       462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a-------l~l~p~~  531 (573)
                      .....+.+++..+.+.|+|++|+..++++|+++|.+..+|.+++.+|.++|++.+|++.|+++       +.++|..
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            456788899999999999999999999999999999999999999999999999999999998       4466764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=3.9e-06  Score=80.74  Aligned_cols=102  Identities=9%  Similarity=-0.033  Sum_probs=84.1

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---  531 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---  531 (573)
                      ++..++...-++..++..|++++|++.|+++|+..|++     ..++.++|.+|..+|++++|+..|++++++.+..   
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   87 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   87 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence            34557777788999999999999999999999999986     4689999999999999999999999999987653   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244          532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWS  561 (573)
Q Consensus       532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~  561 (573)
                          ..++.++..+...+.+..+...+..+..+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                255566677777777778877777666543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=3.2e-06  Score=81.99  Aligned_cols=110  Identities=9%  Similarity=-0.044  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHH-HHHHHHH
Q 008244          432 DTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYY-SNRAAAY  508 (573)
Q Consensus       432 ~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~Ai~~y~~ai~~~p~~~~~~-~n~a~~~  508 (573)
                      .....+++++.........         +|+....|..+|..+...+  ++++|+..++++++++|.+..++ .+++.++
T Consensus        84 ~~~~~~~~al~~~~~~l~~---------~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~  154 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRV---------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA  154 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh---------CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHH
Confidence            3334445555444444433         3477888999998887765  48999999999999999988875 5778899


Q ss_pred             HHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHH
Q 008244          509 LESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQ  550 (573)
Q Consensus       509 ~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~a  550 (573)
                      ...+++++|+..++++++++|++. +++.++.++..++.+++|
T Consensus       155 ~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         155 QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             HTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHH
Confidence            999999999999999999999984 777777777766554443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.82  E-value=6.7e-06  Score=76.70  Aligned_cols=106  Identities=8%  Similarity=-0.123  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCc-HHHHHHH
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-DKKV-RLICAEA  538 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l-~p~~-~~~~~~~  538 (573)
                      |+++..+..++..++..|++++|++.|+++++++|++..++.+++.++...+..++++..+.+...+ +|+. ..++.++
T Consensus        27 P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a  106 (264)
T d1zbpa1          27 PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSF  106 (264)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999998888888877766654443 3443 4666677


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244          539 QQERCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       539 ~~~~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      ......+.+++|.+.++.+.+..|...+
T Consensus       107 ~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1         107 NLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            8888889999999999999988886543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00032  Score=66.63  Aligned_cols=104  Identities=9%  Similarity=-0.034  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---  531 (573)
Q Consensus       461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---  531 (573)
                      ......+..+|..++..|+|++|+..|.+++++.+..      ...+.+++.++...+++.+|+..+.+++++.+..   
T Consensus        48 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~  127 (366)
T d1hz4a_          48 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE  127 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccc
Confidence            4456788999999999999999999999999876543      5788999999999999999999999999875432   


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244          532 ------RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI  564 (573)
Q Consensus       532 ------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  564 (573)
                            .....++.++...+.++.+...|.......+..
T Consensus       128 ~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_         128 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             hhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence                  255566788888889999999998887766643

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.09  E-value=0.0016  Score=59.71  Aligned_cols=63  Identities=21%  Similarity=0.322  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLD  528 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~  528 (573)
                      ++.+.++|..++++++|++|+++|+++.+.  .+..+++++|.+|..    ..++..|...++++.+..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   68 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence            678999999999999999999999999876  589999999999998    779999999999988765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.0016  Score=61.38  Aligned_cols=105  Identities=10%  Similarity=-0.036  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----H-HHHH
Q 008244          463 SAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----R-LICA  536 (573)
Q Consensus       463 ~~~~~~~~g~~~~-~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~-~~~~  536 (573)
                      ....+...+.... ..++.+.|...|+++++..|++..+|...+..+.+.|+++.|...|++|++..|..    . .+..
T Consensus       167 ~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~  246 (308)
T d2onda1         167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR  246 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            3455556665543 35788888888888888888888888888888888888888888888888876543    2 3444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 008244          537 EAQQERCLDITRRQLKIFHMHWSWSPPIKEH  567 (573)
Q Consensus       537 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  567 (573)
                      ..+.....|..+.+.+.++++.+.-|...+.
T Consensus       247 ~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~  277 (308)
T d2onda1         247 FLAFESNIGDLASILKVEKRRFTAFREEYEG  277 (308)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence            4566666688888888888887777754443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.0067  Score=56.92  Aligned_cols=103  Identities=10%  Similarity=-0.075  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKVR-LICAEAQQE  541 (573)
Q Consensus       464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~-l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~  541 (573)
                      ...|...++...+.++++.|.+.|.++++..|.+...|.+.+..... .++.+.|...|+++++.+|++. .....++.+
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            34577888888999999999999999999999999999998887554 5899999999999999999985 666667888


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCC
Q 008244          542 RCLDITRRQLKIFHMHWSWSPPIKE  566 (573)
Q Consensus       542 ~~~~~~~~al~~~~~~~~~~~~~~~  566 (573)
                      ...+.++++...|+++....|..++
T Consensus       214 ~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         214 SHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHcCChHHHHHHHHHHHHhCCCChH
Confidence            8888999999999999887765544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.03  Score=44.04  Aligned_cols=48  Identities=13%  Similarity=-0.009  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE  510 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~  510 (573)
                      ..+.++.+|..+++.|+|++|.++++++|+++|++..+..-+-.+..+
T Consensus        72 ~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1          72 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999988776666544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.46  E-value=0.093  Score=41.88  Aligned_cols=80  Identities=14%  Similarity=0.103  Sum_probs=40.7

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH----HHHHH
Q 008244          477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVRLICAEAQQERC----LDITR  548 (573)
Q Consensus       477 ~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~----~~~~~  548 (573)
                      ..++++|++.|+++.+.  .++.+.+++|..|+.    ..++++|++.|+++.+... ..+.+.++..+..    ....+
T Consensus        36 ~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND-QDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHH
T ss_pred             ccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc-chHHHHHHHHHHcCCccCCCHH
Confidence            34556666666665554  355556666666554    3455666666666655431 1233344443332    13455


Q ss_pred             HHHHHHhhccc
Q 008244          549 RQLKIFHMHWS  559 (573)
Q Consensus       549 ~al~~~~~~~~  559 (573)
                      +|++.|+++..
T Consensus       113 ~A~~~~~~Aa~  123 (133)
T d1klxa_         113 QAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.27  E-value=0.099  Score=41.70  Aligned_cols=64  Identities=20%  Similarity=0.090  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCc
Q 008244          464 AEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDK  529 (573)
Q Consensus       464 ~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p  529 (573)
                      +...+.+|..++.    ..++++|++.|+++.+.  .++.+.+++|.+|..    ..++++|++.|++|.++..
T Consensus        55 ~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          55 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            5566788888876    67899999999999886  588999999999988    5689999999999998754

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=95.22  E-value=0.015  Score=52.76  Aligned_cols=67  Identities=22%  Similarity=0.165  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCc
Q 008244          463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKV  531 (573)
Q Consensus       463 ~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~  531 (573)
                      ....+.++|..++.    .+++++|+..|+++.+.  .++.+++++|.+|.+    .+++++|++.|++|.++....
T Consensus       177 ~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            36777888888887    67899999999999887  478889999999986    457899999999998886543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.13  E-value=4.1  Score=29.54  Aligned_cols=34  Identities=15%  Similarity=0.298  Sum_probs=25.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL  493 (573)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~  493 (573)
                      ....+..+.+++..+-+.|+|++|+.+|.++|+.
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3455777788888888888888888888776653

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.35  E-value=0.7  Score=32.43  Aligned_cols=30  Identities=17%  Similarity=0.174  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK  492 (573)
Q Consensus       463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~  492 (573)
                      .+-.+-.+++.+.+.|+|++||+|+.+|.+
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455667788888899999999988876654