Citrus Sinensis ID: 008246

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570--
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY
cHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccHHHHHHHcccHHHHHccccccccHHHHHHHHHHHHccccccccccHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccHHHHHcccccccccccccccccHHHHccccccccccccccccEEEEEcccccEEEcEEcccccccccccHHHccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccHEHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccccccccccccccccccccccccccccHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHccHHHHHHHHHHHHHHcccccccHHEEEcccccEEEEccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHccccc
MATAKLLLLQLRRcsyyshplsraplchlfnapiptltqtqtpqrafyfrphvhlyhsgsaddssvggdgvgdrysevpipvetvNLSERVIESIageesslpVRALISFLdtyhdftgfpwwTIIVSSTVALRIALLPLIVLQLKKIQRIAEllprlpppfppplsgkrfvDQISLFRRekraagcpSLLWFIASFAIQVPCFLVGVTSIrrmsldghpgfdcggiwwfqnlteyphgvlgsIFPVLMAGLHYTNVQLSfgasslgkeNGLLGLLAKYYKSYLNLmtlplfflgyyipqgslVYWVTNSSFSIVQQLALkhpasrtmlglpdkvvpaaarkpeeidTLETTLESPAKQLKISVENLTPKELIALSVKFLskgdkerpipLLQLalnkepdnINALILMGQTQLQKGLLEEAVEYLECAISKlflaghptepeAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERignlkepeepkskahyyDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSdlsssrrrdy
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSgsaddssvggDGVGDRYSEVPIPVETVNLSERVIESiageesslpVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPrlpppfppplsgKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVpaaarkpeeidtlettlespakqlkisvenltpkELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEqlenndeefvsdlsssrrrdy
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNApiptltqtqtpqRAFYFRPHVHLYHsgsaddssvggdgvgdRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAEllprlpppfppplSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYnelleqlenndeeFVSDLSSSRRRDY
****KLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHS**************DRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPP*****LSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLG*******************************ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIG***********AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY**************************
**************************************************************************YSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQR**********************************AGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQ*********************YKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML******************************************************************************LMGQTQLQKGLLEEAVEYLECAIS************AIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLS****************************KAHYYDGLVVLASALCN*GRNAEAEKYLRLAAAHNPQYNELLEQ********************
MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSG*********DGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENND***************
****KLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGAS*********GLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP*******************TL*S*********ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN**E***D*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNAPIPTLTQTQTPQRAFYFRPHVHLYHSGSADDSSVGGDGVGDRYSEVPIPVETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query572 2.2.26 [Sep-21-2011]
Q0WUC5566 ALBINO3-like protein 3, m yes no 0.746 0.754 0.518 1e-128
Q8L718525 ALBINO3-like protein 2, c no no 0.795 0.866 0.513 1e-123
Q42191429 Mitochondrial inner membr no no 0.396 0.529 0.284 8e-19
Q3SYV3441 Mitochondrial inner membr yes no 0.424 0.551 0.266 6e-16
Q15070435 Mitochondrial inner membr yes no 0.402 0.528 0.261 1e-15
Q8BGA9433 Mitochondrial inner membr yes no 0.435 0.575 0.261 4e-15
O14300374 Mitochondrial inner membr yes no 0.403 0.617 0.271 2e-14
Q9SKD3431 Mitochondrial inner membr no no 0.403 0.535 0.281 3e-14
O43092409 Mitochondrial inner membr no no 0.405 0.567 0.25 3e-12
O13375371 Mitochondrial inner membr N/A no 0.367 0.566 0.234 3e-08
>sp|Q0WUC5|ALB33_ARATH ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=ALB3L3 PE=2 SV=1 Back     alignment and function desciption
 Score =  459 bits (1181), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/453 (51%), Positives = 306/453 (67%), Gaps = 26/453 (5%)

Query: 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL 166
           +IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++ LP+LP  +PP  
Sbjct: 123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182

Query: 167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
           SG+  +DQ+ LFR+E++  GCPS LW  A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct: 183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242

Query: 227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
             WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K +     LAK YK++LNL
Sbjct: 243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTE-LAKAYKTFLNL 301

Query: 287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL-PDKVVPAAARKPEE 345
           +T  L+FL + +PQGSL+YW TN SFSI QQ  L HP     LGL  +  V   A  P  
Sbjct: 302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361

Query: 346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404
            +  E  L  P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+LAL K+P+ + 
Sbjct: 362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLRLALEKDPEYLQ 421

Query: 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAA 464
           A+I++GQ   QK    EA + LE A SKL L   PTE E +DLLIVASQW+GV+ IRQ  
Sbjct: 422 AMIILGQALYQKDQFAEAAKCLEQAASKL-LDTSPTEVEEVDLLIVASQWAGVSNIRQG- 479

Query: 465 HNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524
                                K  EGI HLER+ N+KEP++PKSKAHY D LV+ +SA+ 
Sbjct: 480 ---------------------KTSEGITHLERVANMKEPDDPKSKAHYLDALVLYSSAIF 518

Query: 525 NVGRNAEAEKYLRLAAAHNPQYNELLEQLENND 557
           N GR  EA KYLR   A++P ++ELL+Q E +D
Sbjct: 519 NEGRREEAAKYLRRVVAYDPSFSELLKQCEEDD 551
Probably required for the insertion of integral membrane proteins into the mitochondrial inner membrane.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L718|ALB32_ARATH ALBINO3-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=ALB3L2 PE=2 SV=2 Back     alignment and function description
>sp|Q42191|OXA1_ARATH Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana GN=OXA1 PE=2 SV=2 Back     alignment and function description
>sp|Q3SYV3|OXA1L_BOVIN Mitochondrial inner membrane protein OXA1L OS=Bos taurus GN=OXA1L PE=2 SV=1 Back     alignment and function description
>sp|Q15070|OXA1L_HUMAN Mitochondrial inner membrane protein OXA1L OS=Homo sapiens GN=OXA1L PE=1 SV=3 Back     alignment and function description
>sp|Q8BGA9|OXA1L_MOUSE Mitochondrial inner membrane protein OXA1L OS=Mus musculus GN=Oxa1l PE=2 SV=1 Back     alignment and function description
>sp|O14300|OXA11_SCHPO Mitochondrial inner membrane protein oxa1-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa101 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKD3|OXA1L_ARATH Mitochondrial inner membrane protein OXA1-like OS=Arabidopsis thaliana GN=OXA1L PE=2 SV=1 Back     alignment and function description
>sp|O43092|OXA12_SCHPO Mitochondrial inner membrane protein oxa1-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa102 PE=2 SV=2 Back     alignment and function description
>sp|O13375|OXA1_SACSE Mitochondrial inner membrane protein OXA1 OS=Saccharomyces servazzii GN=OXA1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query572
449442253573 PREDICTED: ALBINO3-like protein 3, mitoc 0.902 0.900 0.559 1e-160
255543108548 cytochrome oxidase biogenesis protein, p 0.942 0.983 0.552 1e-160
225431027572 PREDICTED: ALBINO3-like protein 2, chlor 0.793 0.793 0.578 1e-153
297818908540 binding protein [Arabidopsis lyrata subs 0.926 0.981 0.457 1e-129
145339114566 membrane insertion protein and OxaA/YidC 0.746 0.754 0.518 1e-126
449477882366 PREDICTED: ALBINO3-like protein 2, chlor 0.632 0.989 0.602 1e-124
224103345499 inner membrane protein [Populus trichoca 0.858 0.983 0.496 1e-124
357507673595 ALBINO3-like protein [Medicago truncatul 0.888 0.853 0.420 1e-122
42562960525 ALBINO3-like protein 2 [Arabidopsis thal 0.795 0.866 0.513 1e-121
297837823524 hypothetical protein ARALYDRAFT_475515 [ 0.788 0.860 0.509 1e-118
>gi|449442253|ref|XP_004138896.1| PREDICTED: ALBINO3-like protein 3, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 309/552 (55%), Positives = 385/552 (69%), Gaps = 36/552 (6%)

Query: 28  HLFNAPIPTLTQ-TQTPQRAFYFRPHV-----HLYHSGSADDSSVGGDGVGDRYSEVPIP 81
           H F+  I +L+  T    R+F+ R +       + H G  + S +  D  G +       
Sbjct: 51  HRFDPHISSLSAFTAFSSRSFWTRSNDDSEFDRIAHYG-VESSHLSNDDTGIQ------D 103

Query: 82  VETVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLI 141
           +E   + E VI + A E S LP++ L S LD +H +TG PWW +I SST+ALR  LLP++
Sbjct: 104 LELGGVVEEVIGATAVENSILPIQQLTSILDGFHQYTGMPWWAVIASSTLALRFTLLPIL 163

Query: 142 VLQLKKIQRIAELLPRLPPPFPPPLSGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQV 201
           ++QL K++RI EL P+LPPP PPPLSG+ ++DQISLFR+E++A GCPS LWF A F IQV
Sbjct: 164 IVQLNKLKRIGELFPKLPPPLPPPLSGRSYIDQISLFRKERKAIGCPSFLWFAAYFFIQV 223

Query: 202 PCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSF 261
           PCFL+ + +IR+MSLD +PGFD GG  WFQNLTEYPHGV G IFP L+A LH+ NVQLSF
Sbjct: 224 PCFLLWMVTIRKMSLDHYPGFDYGGALWFQNLTEYPHGVFGPIFPFLIASLHFINVQLSF 283

Query: 262 GASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK 321
             SSL KE G++G+LAKYYK YLNL+T+PLFF+GY IPQGSLVYWVTNSSF+ +QQL L+
Sbjct: 284 RKSSLEKETGIIGILAKYYKLYLNLLTVPLFFIGYCIPQGSLVYWVTNSSFTAIQQLTLQ 343

Query: 322 HPASRTMLGLPDKVVPAAARKPEEIDT-LETTLESPAKQLKISVENLTPKELIALSVKFL 380
           HPA R+ LGLP +  P       E +   +  LE+  K  KISVE L+PKEL+ALSV+ L
Sbjct: 344 HPAVRSKLGLPSRDAPVGTTTLRETNNPGKIPLETTTKWKKISVEKLSPKELLALSVQLL 403

Query: 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440
           SKG KE+ IPLL+ ALNKEP+ + AL++MGQT LQ     EA  YLE AISKLFL+GHPT
Sbjct: 404 SKGQKEKAIPLLRQALNKEPEYVRALVVMGQTLLQNAQPAEATVYLERAISKLFLSGHPT 463

Query: 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500
           E E +DLLI+ASQW+GVA IRQ                       K  EGIAHLER+ NL
Sbjct: 464 EVEGVDLLILASQWAGVAFIRQG----------------------KMVEGIAHLERVANL 501

Query: 501 KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEF 560
           KEPEEPKSKAHYYDGLV+LASAL N GR AEA KYL+ A A+NP Y E L+Q E+++++ 
Sbjct: 502 KEPEEPKSKAHYYDGLVLLASALYNEGRKAEATKYLKSAVAYNPAYKEYLDQCEDDNDKL 561

Query: 561 VSDLSSSRRRDY 572
           V DL SSRR DY
Sbjct: 562 VGDLVSSRRGDY 573

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543108|ref|XP_002512617.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis] gi|223548578|gb|EEF50069.1| cytochrome oxidase biogenesis protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225431027|ref|XP_002273357.1| PREDICTED: ALBINO3-like protein 2, chloroplastic [Vitis vinifera] gi|297735304|emb|CBI17666.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297818908|ref|XP_002877337.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323175|gb|EFH53596.1| binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145339114|ref|NP_190023.2| membrane insertion protein and OxaA/YidC with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|122242629|sp|Q0WUC5.1|ALB33_ARATH RecName: Full=ALBINO3-like protein 3, mitochondrial; Flags: Precursor gi|110742724|dbj|BAE99273.1| hypothetical protein [Arabidopsis thaliana] gi|332644376|gb|AEE77897.1| membrane insertion protein and OxaA/YidC with tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449477882|ref|XP_004155151.1| PREDICTED: ALBINO3-like protein 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224103345|ref|XP_002313020.1| inner membrane protein [Populus trichocarpa] gi|222849428|gb|EEE86975.1| inner membrane protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357507673|ref|XP_003624125.1| ALBINO3-like protein [Medicago truncatula] gi|355499140|gb|AES80343.1| ALBINO3-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|42562960|ref|NP_176688.3| ALBINO3-like protein 2 [Arabidopsis thaliana] gi|38372237|sp|Q8L718.2|ALB32_ARATH RecName: Full=ALBINO3-like protein 2, chloroplastic; Short=Ath5; Flags: Precursor gi|6227006|gb|AAF06042.1|AC009360_7 F16G16.8 [Arabidopsis thaliana] gi|332196206|gb|AEE34327.1| ALBINO3-like protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297837823|ref|XP_002886793.1| hypothetical protein ARALYDRAFT_475515 [Arabidopsis lyrata subsp. lyrata] gi|297332634|gb|EFH63052.1| hypothetical protein ARALYDRAFT_475515 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query572
TAIR|locus:2100172566 AT3G44370 [Arabidopsis thalian 0.618 0.625 0.525 2.1e-111
TAIR|locus:2014973525 AT1G65080 [Arabidopsis thalian 0.645 0.702 0.514 1.9e-99
TAIR|locus:2174068429 OXA1 "homolog of yeast oxidase 0.456 0.608 0.260 1.2e-17
ZFIN|ZDB-GENE-071004-49469 oxa1l "oxidase (cytochrome c) 0.402 0.490 0.282 8.3e-17
TAIR|locus:2039134431 OXA1L "AT2G46470" [Arabidopsis 0.444 0.589 0.269 3.8e-16
UNIPROTKB|E7EVY0408 OXA1L "Mitochondrial inner mem 0.465 0.651 0.262 9e-16
RGD|1585024433 Oxa1l "oxidase (cytochrome c) 0.548 0.725 0.228 1.5e-14
UNIPROTKB|Q15070435 OXA1L "Mitochondrial inner mem 0.451 0.593 0.262 1.5e-14
UNIPROTKB|J3KNA0495 OXA1L "Mitochondrial inner mem 0.451 0.521 0.262 2.2e-14
UNIPROTKB|Q3SYV3441 OXA1L "Mitochondrial inner mem 0.515 0.668 0.243 4.5e-14
TAIR|locus:2100172 AT3G44370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 919 (328.6 bits), Expect = 2.1e-111, Sum P(2) = 2.1e-111
 Identities = 188/358 (52%), Positives = 244/358 (68%)

Query:   107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAEXXXXXXXXXXXXX 166
             +IS LD+YHD TG PWW +I +STVA R ALLP+++LQ K+ +RI++             
Sbjct:   123 VISLLDSYHDITGLPWWVVIATSTVAFRTALLPILILQRKQTKRISQFLPKLPHFWPPQG 182

Query:   167 SGKRFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGG 226
             SG+  +DQ+ LFR+E++  GCPS LW  A F+IQ+ CF + +TSIRRMSLD HPGFD GG
Sbjct:   183 SGRSVLDQLKLFRKERKDIGCPSFLWVPAYFSIQISCFFLWITSIRRMSLDHHPGFDSGG 242

Query:   227 IWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNL 286
               WFQNLTE P+G+ G +FP L+AGLHYTN Q++F ASS+ K +    L AK YK++LNL
Sbjct:   243 ALWFQNLTEIPNGLYGPLFPFLIAGLHYTNTQITFTASSVHKVDKFTEL-AKAYKTFLNL 301

Query:   287 MTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP-DKVVPAAARKPEE 345
             +T  L+FL + +PQGSL+YW TN SFSI QQ  L HP     LGL  +  V   A  P  
Sbjct:   302 LTCALYFLSFQMPQGSLLYWATNLSFSIAQQSILNHPVVSAKLGLQANDSVQKEAGNPIL 361

Query:   346 IDTLETTLESPAKQLK-ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404
              +  E  L  P+ + + ISV NLTPKEL+ALS K+LS G K++ IPLL+LAL K+P+ + 
Sbjct:   362 TNINEGKLTDPSSKGRLISVHNLTPKELVALSAKYLSGGHKDKSIPLLRLALEKDPEYLQ 421

Query:   405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ 462
             A+I++GQ   QK    EA + LE A SKL L   PTE E +DLLIVASQW+GV+ IRQ
Sbjct:   422 AMIILGQALYQKDQFAEAAKCLEQAASKL-LDTSPTEVEEVDLLIVASQWAGVSNIRQ 478
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0051205 "protein insertion into membrane" evidence=IEA
TAIR|locus:2014973 AT1G65080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174068 OXA1 "homolog of yeast oxidase assembly 1 (OXA1)" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-071004-49 oxa1l "oxidase (cytochrome c) assembly 1-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2039134 OXA1L "AT2G46470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E7EVY0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1585024 Oxa1l "oxidase (cytochrome c) assembly 1-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q15070 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNA0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SYV3 OXA1L "Mitochondrial inner membrane protein OXA1L" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0WUC5ALB33_ARATHNo assigned EC number0.51870.74650.7544yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
pfam02096193 pfam02096, 60KD_IMP, 60Kd inner membrane protein 1e-17
COG0706314 COG0706, YidC, Preprotein translocase subunit YidC 3e-11
TIGR03592181 TIGR03592, yidC_oxa1_cterm, membrane protein inser 5e-09
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 4e-05
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 6e-04
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 0.004
>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein Back     alignment and domain information 
 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 39/215 (18%)

Query: 122 WWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRL----------PPPFPPPLSGKRF 171
           W   I+  T+ +R+ LLPL + Q K + ++ EL P +          P         ++ 
Sbjct: 3   WGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKDDP---------QKL 53

Query: 172 VDQISLFRREKR---AAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW 228
             ++    +E      AGC  +L       IQ+P F+    ++R M+       +  G  
Sbjct: 54  QQEMMKLYKEHGVNPLAGCLPML-------IQLPIFIALYRALRNMA--ELRSLETAGFL 104

Query: 229 WFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMT 288
           W ++L+         I P+L     +   +LS        +       +   K  + +M 
Sbjct: 105 WIKDLSAPDPPYF--ILPILAGLTMFLQQKLSPSQDPPDLQQ------SAQMKIMMYIMP 156

Query: 289 LPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323
           L   F     P G ++YW+ ++ FS+VQQL ++ P
Sbjct: 157 LIFLFFFLNFPAGLVLYWIVSNLFSLVQQLIIRKP 191

Length = 193
>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 572
PRK02944255 OxaA-like protein precursor; Validated 100.0
PRK00145223 putative inner membrane protein translocase compon 100.0
PRK01622256 OxaA-like protein precursor; Validated 100.0
PF02096198 60KD_IMP: 60Kd inner membrane protein; InterPro: I 100.0
PRK02463307 OxaA-like protein precursor; Provisional 100.0
TIGR03592181 yidC_oxa1_cterm membrane protein insertase, YidC/O 100.0
PRK01318521 membrane protein insertase; Provisional 100.0
PRK01001795 putative inner membrane protein translocase compon 100.0
PRK03449304 putative inner membrane protein translocase compon 100.0
COG0706314 YidC Preprotein translocase subunit YidC [Intracel 100.0
PRK02201357 putative inner membrane protein translocase compon 100.0
PRK01315329 putative inner membrane protein translocase compon 100.0
PRK00247429 putative inner membrane protein translocase compon 100.0
KOG1239372 consensus Inner membrane protein translocase invol 99.97
PRK02654375 putative inner membrane protein translocase compon 99.95
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.72
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.72
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.62
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.59
KOG1126638 consensus DNA-binding cell division cycle control 99.56
PRK12370553 invasion protein regulator; Provisional 99.52
PRK15359144 type III secretion system chaperone protein SscB; 99.49
KOG1126638 consensus DNA-binding cell division cycle control 99.48
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.47
PRK11189296 lipoprotein NlpI; Provisional 99.47
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.45
PRK12370553 invasion protein regulator; Provisional 99.45
PRK10370198 formate-dependent nitrite reductase complex subuni 99.44
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.44
TIGR00990 615 3a0801s09 mitochondrial precursor proteins import 99.44
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.43
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.42
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.41
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.4
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.38
PRK15359144 type III secretion system chaperone protein SscB; 99.37
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.35
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.34
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.34
PRK11189296 lipoprotein NlpI; Provisional 99.33
PRK10370198 formate-dependent nitrite reductase complex subuni 99.29
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.27
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.25
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.25
PRK11788389 tetratricopeptide repeat protein; Provisional 99.21
KOG0547606 consensus Translocase of outer mitochondrial membr 99.21
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.2
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.2
PRK11788 389 tetratricopeptide repeat protein; Provisional 99.2
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.2
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.18
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.16
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.14
KOG1125579 consensus TPR repeat-containing protein [General f 99.14
KOG0547606 consensus Translocase of outer mitochondrial membr 99.13
KOG0553304 consensus TPR repeat-containing protein [General f 99.13
KOG1125579 consensus TPR repeat-containing protein [General f 99.1
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.1
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.1
PLN02789 320 farnesyltranstransferase 99.07
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.07
PRK10153517 DNA-binding transcriptional activator CadC; Provis 99.06
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.04
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.04
KOG0553304 consensus TPR repeat-containing protein [General f 99.04
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.04
COG4783484 Putative Zn-dependent protease, contains TPR repea 99.03
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.03
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.02
PLN02789320 farnesyltranstransferase 99.02
KOG0550 486 consensus Molecular chaperone (DnaJ superfamily) [ 99.01
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.01
KOG1129478 consensus TPR repeat-containing protein [General f 98.99
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.98
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.94
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.93
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 98.92
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.91
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.91
PRK02603172 photosystem I assembly protein Ycf3; Provisional 98.91
PRK10747398 putative protoheme IX biogenesis protein; Provisio 98.91
PRK14574 822 hmsH outer membrane protein; Provisional 98.91
KOG0624 504 consensus dsRNA-activated protein kinase inhibitor 98.9
KOG1840 508 consensus Kinesin light chain [Cytoskeleton] 98.88
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.88
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 98.87
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.87
cd05804 355 StaR_like StaR_like; a well-conserved protein foun 98.87
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 98.86
KOG2076 895 consensus RNA polymerase III transcription factor 98.84
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 98.82
PRK14574 822 hmsH outer membrane protein; Provisional 98.82
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 98.81
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 98.8
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 98.8
KOG1129478 consensus TPR repeat-containing protein [General f 98.8
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 98.79
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.79
CHL00033168 ycf3 photosystem I assembly protein Ycf3 98.78
CHL00033168 ycf3 photosystem I assembly protein Ycf3 98.78
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 98.76
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 98.74
KOG0624 504 consensus dsRNA-activated protein kinase inhibitor 98.74
cd05804 355 StaR_like StaR_like; a well-conserved protein foun 98.73
PRK11906458 transcriptional regulator; Provisional 98.71
PRK10803263 tol-pal system protein YbgF; Provisional 98.7
KOG0550 486 consensus Molecular chaperone (DnaJ superfamily) [ 98.7
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.69
PRK10803263 tol-pal system protein YbgF; Provisional 98.68
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.66
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.65
KOG2003 840 consensus TPR repeat-containing protein [General f 98.64
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.62
PRK10747398 putative protoheme IX biogenesis protein; Provisio 98.62
COG2956 389 Predicted N-acetylglucosaminyl transferase [Carboh 98.62
KOG2003 840 consensus TPR repeat-containing protein [General f 98.61
KOG4162799 consensus Predicted calmodulin-binding protein [Si 98.59
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.58
PF12688120 TPR_5: Tetratrico peptide repeat 98.58
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.56
PRK14720 906 transcript cleavage factor/unknown domain fusion p 98.54
TIGR00540 409 hemY_coli hemY protein. This is an uncharacterized 98.53
PRK15331165 chaperone protein SicA; Provisional 98.5
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.49
PF12688120 TPR_5: Tetratrico peptide repeat 98.49
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 98.49
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.47
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.47
KOG0495 913 consensus HAT repeat protein [RNA processing and m 98.45
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.45
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.45
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 98.45
PRK11906458 transcriptional regulator; Provisional 98.42
PRK14720 906 transcript cleavage factor/unknown domain fusion p 98.42
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 98.42
PRK02603172 photosystem I assembly protein Ycf3; Provisional 98.41
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.38
PF13512142 TPR_18: Tetratricopeptide repeat 98.37
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.36
KOG1128 777 consensus Uncharacterized conserved protein, conta 98.33
KOG2076 895 consensus RNA polymerase III transcription factor 98.33
PF1337173 TPR_9: Tetratricopeptide repeat 98.32
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.31
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 98.3
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.3
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.29
KOG2376 652 consensus Signal recognition particle, subunit Srp 98.28
KOG4648 536 consensus Uncharacterized conserved protein, conta 98.27
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 98.27
KOG4162799 consensus Predicted calmodulin-binding protein [Si 98.26
PRK15331165 chaperone protein SicA; Provisional 98.24
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 98.24
KOG4555175 consensus TPR repeat-containing protein [Function 98.21
KOG0495913 consensus HAT repeat protein [RNA processing and m 98.2
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.19
KOG4234271 consensus TPR repeat-containing protein [General f 98.19
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.17
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 98.16
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 98.16
COG4700251 Uncharacterized protein conserved in bacteria cont 98.15
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.13
KOG1128 777 consensus Uncharacterized conserved protein, conta 98.12
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.12
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 98.09
PF06552186 TOM20_plant: Plant specific mitochondrial import r 98.09
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 98.08
PF1343134 TPR_17: Tetratricopeptide repeat 98.08
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 98.07
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.07
KOG4648 536 consensus Uncharacterized conserved protein, conta 98.07
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 98.07
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.06
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 98.05
PF1342844 TPR_14: Tetratricopeptide repeat 98.05
COG4700251 Uncharacterized protein conserved in bacteria cont 98.02
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 98.02
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 98.02
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.01
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 98.0
PF13512142 TPR_18: Tetratricopeptide repeat 97.99
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 97.96
PLN03218 1060 maturation of RBCL 1; Provisional 97.95
PRK04841 903 transcriptional regulator MalT; Provisional 97.89
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 97.83
PF1337173 TPR_9: Tetratricopeptide repeat 97.8
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 97.79
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 97.78
COG2976207 Uncharacterized protein conserved in bacteria [Fun 97.77
KOG4555175 consensus TPR repeat-containing protein [Function 97.76
KOG3785 557 consensus Uncharacterized conserved protein [Funct 97.74
PF04184 539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 97.73
PLN03218 1060 maturation of RBCL 1; Provisional 97.7
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.67
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 97.64
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 97.61
PRK04841 903 transcriptional regulator MalT; Provisional 97.6
KOG1941 518 consensus Acetylcholine receptor-associated protei 97.6
KOG2796366 consensus Uncharacterized conserved protein [Funct 97.57
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.57
COG0457291 NrfG FOG: TPR repeat [General function prediction 97.56
PF06552186 TOM20_plant: Plant specific mitochondrial import r 97.55
KOG2376 652 consensus Signal recognition particle, subunit Srp 97.54
KOG4340 459 consensus Uncharacterized conserved protein [Funct 97.53
KOG4642 284 consensus Chaperone-dependent E3 ubiquitin protein 97.5
KOG1586288 consensus Protein required for fusion of vesicles 97.5
KOG3785 557 consensus Uncharacterized conserved protein [Funct 97.45
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 97.41
COG0457291 NrfG FOG: TPR repeat [General function prediction 97.38
PF1342844 TPR_14: Tetratricopeptide repeat 97.38
PLN03077 857 Protein ECB2; Provisional 97.35
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 97.34
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.33
KOG4234271 consensus TPR repeat-containing protein [General f 97.32
PLN03077 857 Protein ECB2; Provisional 97.3
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.25
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.21
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.2
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 97.18
COG4105254 ComL DNA uptake lipoprotein [General function pred 97.15
COG3071 400 HemY Uncharacterized enzyme of heme biosynthesis [ 97.07
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 97.06
KOG2610 491 consensus Uncharacterized conserved protein [Funct 97.02
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 96.92
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 96.85
KOG0551 390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 96.8
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 96.76
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 96.72
COG2976207 Uncharacterized protein conserved in bacteria [Fun 96.71
KOG1585308 consensus Protein required for fusion of vesicles 96.68
KOG1941 518 consensus Acetylcholine receptor-associated protei 96.68
PF05843 280 Suf: Suppressor of forked protein (Suf); InterPro: 96.66
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.66
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 96.63
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 96.59
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.57
PF04184 539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 96.57
KOG1586288 consensus Protein required for fusion of vesicles 96.53
KOG1915 677 consensus Cell cycle control protein (crooked neck 96.53
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 96.51
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 96.45
KOG4340 459 consensus Uncharacterized conserved protein [Funct 96.37
PF13281374 DUF4071: Domain of unknown function (DUF4071) 96.36
KOG1915 677 consensus Cell cycle control protein (crooked neck 96.27
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 96.26
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 96.24
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 96.14
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 96.09
PF1343134 TPR_17: Tetratricopeptide repeat 96.07
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 96.01
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 95.94
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 95.94
KOG3824 472 consensus Huntingtin interacting protein HYPE [Gen 95.94
COG3898 531 Uncharacterized membrane-bound protein [Function u 95.89
PF08424 321 NRDE-2: NRDE-2, necessary for RNA interference; In 95.85
KOG2047 835 consensus mRNA splicing factor [RNA processing and 95.81
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 95.72
KOG2471 696 consensus TPR repeat-containing protein [General f 95.66
KOG2047 835 consensus mRNA splicing factor [RNA processing and 95.57
KOG2610 491 consensus Uncharacterized conserved protein [Funct 95.52
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 95.3
KOG3807 556 consensus Predicted membrane protein ST7 (tumor su 95.26
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 95.26
KOG0551 390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 95.21
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 95.11
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 95.08
PF04910 360 Tcf25: Transcriptional repressor TCF25; InterPro: 95.07
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 95.07
KOG2300 629 consensus Uncharacterized conserved protein [Funct 95.04
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 95.03
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 94.88
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 94.86
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 94.82
KOG1585 308 consensus Protein required for fusion of vesicles 94.75
COG4649221 Uncharacterized protein conserved in bacteria [Fun 94.74
KOG4507 886 consensus Uncharacterized conserved protein, conta 94.68
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 94.61
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 94.51
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 94.3
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 94.28
COG4976287 Predicted methyltransferase (contains TPR repeat) 94.04
KOG2300629 consensus Uncharacterized conserved protein [Funct 93.93
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 93.93
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 93.79
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 93.64
PRK10941269 hypothetical protein; Provisional 93.64
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 93.62
KOG1550 552 consensus Extracellular protein SEL-1 and related 93.5
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 93.37
KOG3824 472 consensus Huntingtin interacting protein HYPE [Gen 93.35
KOG2796366 consensus Uncharacterized conserved protein [Funct 93.27
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 93.22
PF09986214 DUF2225: Uncharacterized protein conserved in bact 93.22
COG3898531 Uncharacterized membrane-bound protein [Function u 93.2
PF13281374 DUF4071: Domain of unknown function (DUF4071) 93.15
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 93.02
PF1286294 Apc5: Anaphase-promoting complex subunit 5 92.85
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 92.83
KOG3364149 consensus Membrane protein involved in organellar 92.81
PF09986214 DUF2225: Uncharacterized protein conserved in bact 92.77
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 92.63
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 92.62
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 92.58
KOG2471 696 consensus TPR repeat-containing protein [General f 92.5
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 92.41
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 92.39
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 92.33
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 92.32
PF1286294 Apc5: Anaphase-promoting complex subunit 5 92.01
PF04910 360 Tcf25: Transcriptional repressor TCF25; InterPro: 90.7
KOG4507 886 consensus Uncharacterized conserved protein, conta 90.41
COG3118304 Thioredoxin domain-containing protein [Posttransla 90.36
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 90.28
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 90.09
PF08424 321 NRDE-2: NRDE-2, necessary for RNA interference; In 89.54
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 89.2
COG3629280 DnrI DNA-binding transcriptional activator of the 89.1
PF10373278 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP 88.97
KOG2581 493 consensus 26S proteasome regulatory complex, subun 88.91
KOG3616 1636 consensus Selective LIM binding factor [Transcript 88.62
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 88.45
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 88.35
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 88.08
PRK13184 932 pknD serine/threonine-protein kinase; Reviewed 87.95
COG4976 287 Predicted methyltransferase (contains TPR repeat) 87.72
COG4455273 ImpE Protein of avirulence locus involved in tempe 87.5
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 87.36
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 87.29
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 87.18
KOG1550552 consensus Extracellular protein SEL-1 and related 86.94
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 86.44
PF08631 278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 86.17
PRK10941269 hypothetical protein; Provisional 85.81
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 85.59
PF09670379 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 85.58
KOG1839 1236 consensus Uncharacterized protein CLU1/cluA/TIF31 85.37
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 85.26
PF1051638 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat 84.73
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 84.56
TIGR03362301 VI_chp_7 type VI secretion-associated protein, VC_ 84.51
KOG0530318 consensus Protein farnesyltransferase, alpha subun 84.22
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 83.94
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 83.85
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 83.52
PF10345608 Cohesin_load: Cohesin loading factor; InterPro: IP 83.13
COG3947361 Response regulator containing CheY-like receiver a 82.65
PF14863141 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB 82.57
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 80.43
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 80.22
COG2912269 Uncharacterized conserved protein [Function unknow 80.05
>PRK02944 OxaA-like protein precursor; Validated Back     alignment and domain information 
Probab=100.00  E-value=1.4e-43  Score=352.13  Aligned_cols=208  Identities=21%  Similarity=0.318  Sum_probs=179.2

Q ss_pred             hHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCc------hhHHHHHH
Q 008246          103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG------KRFVDQIS  176 (572)
Q Consensus       103 pv~~v~~~l~~lh~~~glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~------~~~~e~~~  176 (572)
                      -+..+.++|+++|..+|.|||++|+++|+++|++++|++++|+|+++||+++|||++++++||+++      +.++|+++
T Consensus        40 ~~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~  119 (255)
T PRK02944         40 FVYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQ  119 (255)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999987643      23578899


Q ss_pred             HHHHhhhhCCCCchhHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCccccccccccCCCCCCCchhHHHHHHHHHHHHHH
Q 008246          177 LFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTN  256 (572)
Q Consensus       177 l~kk~~~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~~~g~lW~~dLt~~Dp~~~~~iLPil~~~~~~~~  256 (572)
                      +||||    ||+|+. ..+|+++|+|||+++|.++|++.     ++.++||+|| ||+.+||   +++||++++++++++
T Consensus       120 Lyk~~----gvnP~~-g~lp~liQ~Pifi~lf~~i~~~~-----~l~~~~flW~-dLs~~Dp---~~iLPil~~~~~~~~  185 (255)
T PRK02944        120 LFQKN----GVNPLA-GCLPIFIQMPILIAFYHAIMRTS-----EISKHSFLWF-DLGQADP---YYILPIVAGITTFIQ  185 (255)
T ss_pred             HHHHc----CCCchH-HHHHHHHHHHHHHHHHHHHHhhH-----HHhhcCCCcc-ccCcchH---HHHHHHHHHHHHHHH
Confidence            99998    677764 45899999999999999999985     6788999999 9999999   899999999999999


Q ss_pred             HHHhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHcCHHHHhhhCCCC
Q 008246          257 VQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPD  333 (572)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr~~~~r~~lgip~  333 (572)
                      .+++....   +.++      ..++.+++++++.+++++.++|+|+++||++||+|+++|++++++|.+|+..+-..
T Consensus       186 ~~~~~~~~---~~~~------~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~~~~~~~~~~~~  253 (255)
T PRK02944        186 QKLMMAGT---AGQN------PQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAGGS  253 (255)
T ss_pred             HHhcccCC---CCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhhcCCC
Confidence            88754321   1111      12456777888888888999999999999999999999999999999999876543

>PRK00145 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>PRK01622 OxaA-like protein precursor; Validated Back     alignment and domain information
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes Back     alignment and domain information
>PRK02463 OxaA-like protein precursor; Provisional Back     alignment and domain information
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain Back     alignment and domain information
>PRK01318 membrane protein insertase; Provisional Back     alignment and domain information
>PRK01001 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>PRK03449 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK02201 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>PRK01315 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>PRK00247 putative inner membrane protein translocase component YidC; Validated Back     alignment and domain information
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK02654 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13184 pknD serine/threonine-protein kinase; Reviewed Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query572
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 6e-10
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 2e-05
1w3b_A 388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 4e-09
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 4e-05
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 1e-04
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 2e-04
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 3e-08
3ieg_A 359 DNAJ homolog subfamily C member 3; TPR motif, chap 1e-06
4eqf_A 365 PEX5-related protein; accessory protein, tetratric 4e-08
4eqf_A365 PEX5-related protein; accessory protein, tetratric 2e-07
4eqf_A365 PEX5-related protein; accessory protein, tetratric 5e-04
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 4e-08
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 7e-04
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 5e-08
4g1t_A472 Interferon-induced protein with tetratricopeptide 6e-08
4g1t_A 472 Interferon-induced protein with tetratricopeptide 4e-05
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 9e-08
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 2e-07
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 2e-07
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 3e-07
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 8e-05
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 8e-04
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 8e-04
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 4e-07
3cv0_A 327 Peroxisome targeting signal 1 receptor PEX5; TPR m 3e-06
2gw1_A514 Mitochondrial precursor proteins import receptor; 5e-07
2gw1_A514 Mitochondrial precursor proteins import receptor; 4e-05
2gw1_A514 Mitochondrial precursor proteins import receptor; 6e-05
2gw1_A514 Mitochondrial precursor proteins import receptor; 4e-04
2gw1_A 514 Mitochondrial precursor proteins import receptor; 8e-04
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 7e-07
1fch_A 368 Peroxisomal targeting signal 1 receptor; protein-p 1e-05
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 3e-06
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 3e-06
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 5e-06
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 5e-04
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 1e-05
3hym_B 330 Cell division cycle protein 16 homolog; APC, anaph 2e-05
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 4e-05
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 2e-05
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 1e-04
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 2e-04
2xpi_A 597 Anaphase-promoting complex subunit CUT9; cell cycl 6e-04
3v6t_A 499 DHAX3; tandem repeats, DNA specific binding protei 3e-05
3v6t_A 499 DHAX3; tandem repeats, DNA specific binding protei 1e-04
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 2e-04
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 4e-04
3u4t_A272 TPR repeat-containing protein; structural genomics 4e-05
3u4t_A272 TPR repeat-containing protein; structural genomics 8e-05
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 5e-05
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 6e-05
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 9e-05
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 1e-04
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 2e-04
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 4e-04
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 76.0 bits (186), Expect = 2e-14
 Identities = 69/514 (13%), Positives = 148/514 (28%), Gaps = 153/514 (29%)

Query: 100 SSLPVRALISF-LDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRL 158
           + + +   +S+ +    DF  F W  +   ++    + +L  ++ Q+           R 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDP-----NWTSRS 217

Query: 159 PPPFPPPLSGKRFVDQISLFRREKRAAGCPSLL--------WFIASFAIQVPCFLVGVTS 210
                  L       ++    + K    C  LL            +F +   C ++ +T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLS--CKIL-LTT 272

Query: 211 IRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKEN 270
             R                F+ +T++            ++    T++ L   + +L  + 
Sbjct: 273 --R----------------FKQVTDF------------LSAATTTHISLDHHSMTLTPDE 302

Query: 271 GLLGLLAKYYKSYLNLMT--LPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK-HPASRT 327
               LL KY    L+     LP         +                   L  +P   +
Sbjct: 303 VK-SLLLKY----LDCRPQDLP--------RE------------------VLTTNPRRLS 331

Query: 328 MLGLPDKVVPAAARKPEEIDTLETTLESPAKQL----KISVENLTPKEL----IALSVKF 379
           ++              + + T +        +L    + S+  L P E       LSV F
Sbjct: 332 IIA---------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-F 381

Query: 380 LSKGDKERPIP--LLQLALNKEPDNINALILMGQTQL-QKGLLEEAVEYLECAISKLFLA 436
                    IP  LL L       +   +++    +L +  L+E+  +    +I  ++L 
Sbjct: 382 ----PPSAHIPTILLSLIWFDVIKSDVMVVV---NKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQL--KLLSFVSQEKWEEG---- 490
                                     A H    +V    +     S      + +     
Sbjct: 435 LKVKLEN-----------------EYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 491 -IA-HLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA-----------EKYLR 537
            I  HL+ I + +     +    + D    L   + +      A           + Y  
Sbjct: 476 HIGHHLKNIEHPERMTLFRMV--FLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 538 LAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRD 571
               ++P+Y  L+  + +   +   +L  S+  D
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query572
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.76
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.76
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.74
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.71
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.7
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.69
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.68
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.67
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.66
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.65
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.65
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.64
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.64
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.62
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 99.61
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.61
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.61
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.59
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.59
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.57
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.57
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 99.57
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.57
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.57
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.56
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.56
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.55
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.55
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.55
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.55
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.55
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.54
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.54
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.54
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.54
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.53
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.53
3u4t_A272 TPR repeat-containing protein; structural genomics 99.53
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.53
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.52
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.52
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.51
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.51
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.51
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.51
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.51
3u4t_A272 TPR repeat-containing protein; structural genomics 99.5
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 99.5
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.5
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 99.49
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 99.49
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.49
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.49
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.49
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.49
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.47
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.47
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.47
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.47
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 99.47
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.46
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.45
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.44
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.44
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.44
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.44
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.44
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 99.44
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.44
2gw1_A514 Mitochondrial precursor proteins import receptor; 99.44
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.43
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.42
2pzi_A 681 Probable serine/threonine-protein kinase PKNG; ATP 99.42
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.42
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.42
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 99.41
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.4
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 99.4
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 99.4
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.4
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.39
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.38
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.38
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.38
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 99.36
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.35
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.35
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.35
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 99.33
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 99.33
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.33
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.33
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.33
3q49_B137 STIP1 homology and U box-containing protein 1; E3 99.32
2gw1_A 514 Mitochondrial precursor proteins import receptor; 99.32
1xnf_A 275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.32
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.31
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 99.31
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.31
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.29
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.29
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 99.29
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.29
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.28
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.28
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.28
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.28
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.27
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.27
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.27
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 99.27
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.27
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.27
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.26
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.26
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.25
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.25
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 99.25
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.24
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.23
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 99.23
4a1s_A 411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.23
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.22
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.22
4g1t_A 472 Interferon-induced protein with tetratricopeptide 99.22
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.22
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.22
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 99.22
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.22
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 99.21
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 99.21
3sf4_A 406 G-protein-signaling modulator 2; tetratricopeptide 99.21
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 99.21
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 99.21
3sf4_A 406 G-protein-signaling modulator 2; tetratricopeptide 99.21
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 99.21
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 99.2
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.2
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 99.19
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 99.19
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.19
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 99.19
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.18
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 99.16
3k9i_A117 BH0479 protein; putative protein binding protein, 99.16
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.16
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.15
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 99.15
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.15
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 99.14
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.14
2c2l_A 281 CHIP, carboxy terminus of HSP70-interacting protei 99.12
3u3w_A293 Transcriptional activator PLCR protein; ternary co 99.12
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 99.08
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.06
2l6j_A111 TPR repeat-containing protein associated with HSP; 99.06
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 99.06
1hz4_A 373 MALT regulatory protein; two-helix bundles, helix 99.06
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.04
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 99.03
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 99.03
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.02
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.01
2kat_A115 Uncharacterized protein; NESG, structure, structur 98.99
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 98.99
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 98.99
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 98.97
3k9i_A117 BH0479 protein; putative protein binding protein, 98.94
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 98.94
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 98.93
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 98.93
1hz4_A 373 MALT regulatory protein; two-helix bundles, helix 98.92
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.91
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 98.91
3dra_A 306 Protein farnesyltransferase/geranylgeranyltransfer 98.9
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 98.9
2xm6_A 490 Protein corresponding to locus C5321 from CFT073 s 98.89
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 98.88
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 98.88
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 98.85
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 98.8
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 98.79
2kat_A115 Uncharacterized protein; NESG, structure, structur 98.78
2l6j_A111 TPR repeat-containing protein associated with HSP; 98.78
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 98.77
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.76
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 98.76
3q7a_A 349 Farnesyltransferase alpha subunit; protein prenylt 98.75
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 98.74
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 98.73
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 98.71
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 98.69
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 98.68
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 98.63
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.61
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 98.59
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 98.56
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 98.49
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 98.36
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.29
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.28
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 98.27
1klx_A138 Cysteine rich protein B; structural genomics, heli 98.26
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 98.24
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 98.24
3qww_A433 SET and MYND domain-containing protein 2; methyltr 98.22
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 98.19
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 98.19
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 98.12
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 98.12
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 98.09
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 98.01
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 97.9
1pc2_A152 Mitochondria fission protein; unknown function; NM 97.9
1pc2_A152 Mitochondria fission protein; unknown function; NM 97.89
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 97.8
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 97.78
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 97.71
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 97.62
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 97.16
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 97.05
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 97.03
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 96.68
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 96.6
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 96.59
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 96.51
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 96.45
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 96.45
2uy1_A 493 Cleavage stimulation factor 77; RNA-binding protei 96.34
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 95.91
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 95.8
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 95.33
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 94.97
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 94.94
3o48_A134 Mitochondria fission 1 protein; tetratricopeptide 94.8
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 94.2
1ya0_A 497 SMG-7 transcript variant 2; alpha-helical repeat, 93.41
2ff4_A 388 Probable regulatory protein EMBR; winged-helix, te 93.38
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 92.38
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 92.25
4b4t_S 523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 91.9
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 90.93
4b4t_R 429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 90.3
1zbp_A 273 Hypothetical protein VPA1032; alpha-beta protein, 89.43
3txn_A 394 26S proteasome regulatory complex subunit P42B; PC 89.27
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 88.97
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 87.86
1ya0_A 497 SMG-7 transcript variant 2; alpha-helical repeat, 87.2
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 87.11
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 86.45
4fhn_B 1139 Nucleoporin NUP120; protein complex,structural pro 86.22
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 84.84
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 82.86
4b4t_S 523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 81.78
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 81.36
3kae_A242 CDC27, possible protein of nuclear scaffold; tetra 80.33
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
Probab=99.76  E-value=1.6e-17  Score=154.75  Aligned_cols=160  Identities=21%  Similarity=0.214  Sum_probs=134.6

Q ss_pred             CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246          368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL  447 (572)
Q Consensus       368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~  447 (572)
                      ++..|+.+|..+..+|++++|+.+|+++++.+|+++.+++.+|.+|...|++++|+..+++++..     .|++.     
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-----   73 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTTSA-----   73 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CchhH-----
Confidence            57889999999999999999999999999999999999999999999999999999999999985     55543     


Q ss_pred             HHHHHHHHHHHHHHhhchhh-----HHHHHhh-------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHH
Q 008246          448 LIVASQWSGVACIRQAAHNF-----FELVQQG-------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG  515 (572)
Q Consensus       448 ~~~a~~~lG~~~~~~g~~~~-----~~a~~~~-------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~a  515 (572)
                        .++..+|..+...++.+.     .++....       ...+.++...|++++|++.|+++++    .+|.+.    .+
T Consensus        74 --~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~----~~p~~~----~~  143 (184)
T 3vtx_A           74 --EAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS----IKPGFI----RA  143 (184)
T ss_dssp             --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH----HH
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH----hcchhh----hH
Confidence              356777888888875442     2222222       2245678899999999999999999    455543    56


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246          516 LVVLASALCNVGRNAEAEKYLRLAAAHNPQYN  547 (572)
Q Consensus       516 l~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~  547 (572)
                      +..+|.+|..+|++++|+++|+++++++|++.
T Consensus       144 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          144 YQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            77899999999999999999999999999764
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 572
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 5e-09
d1w3ba_ 388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 2e-07
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 1e-04
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 1e-04
d1fcha_ 323 a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting 2e-04
d1dcea1334 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr 4e-04
d1zbpa1264 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V 5e-04
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 5e-09
 Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 18/189 (9%)

Query: 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431
            I L          +R +     AL+  P++      +     ++GL++ A++    AI 
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265

Query: 432 KLFLAGHPTEPEAIDLLIVASQWSG-----VACIRQAAHNFFELVQQGQLKLLSFVSQEK 486
                  P  P+A   L  A +  G       C   A                    Q  
Sbjct: 266 L-----QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320

Query: 487 WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546
            EE +    +   +  PE     AH       LAS L   G+  EA  + + A   +P +
Sbjct: 321 IEEAVRLYRKALEVF-PEFAA--AHSN-----LASVLQQQGKLQEALMHYKEAIRISPTF 372

Query: 547 NELLEQLEN 555
            +    + N
Sbjct: 373 ADAYSNMGN 381
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query572
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.68
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.64
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.62
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.6
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.6
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.52
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.51
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.48
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.45
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.43
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.39
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.38
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.37
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.36
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.3
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.29
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.29
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.29
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.27
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.26
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.24
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.2
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.18
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.18
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.17
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.15
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.14
d1hz4a_ 366 Transcription factor MalT domain III {Escherichia 99.12
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.12
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.1
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.09
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.09
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.07
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 99.06
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.05
d1zbpa1 264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 99.02
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 98.97
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.97
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 98.96
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 98.95
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 98.89
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 98.74
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.72
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 98.69
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 98.63
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.62
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 98.61
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.41
d1hz4a_366 Transcription factor MalT domain III {Escherichia 98.37
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 98.09
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.07
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 98.02
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 97.82
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 97.57
d1ouva_ 265 Cysteine rich protein C (HcpC) {Helicobacter pylor 97.53
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 97.02
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 87.81
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 87.22
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.3e-16  Score=156.22  Aligned_cols=178  Identities=17%  Similarity=0.095  Sum_probs=149.2

Q ss_pred             hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246          359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH  438 (572)
Q Consensus       359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~  438 (572)
                      .+++..+|.+++.+..+|..+...|++++|+..|+++++.+|.++..+..+|.++...|++++|+++|++|+++     +
T Consensus       193 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~  267 (388)
T d1w3ba_         193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----Q  267 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----C
T ss_pred             HHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence            35677788889999999999999999999999999999999999999999999999999999999999999985     6


Q ss_pred             CCChhhhhHHHHHHHHHHHHHHHhhchhhHH-----HHH-------hhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246          439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFE-----LVQ-------QGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEP  506 (572)
Q Consensus       439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~-----a~~-------~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp  506 (572)
                      |+++       .++..+|.++...|+.+...     +..       .....+.++...|++++|++.|+++++    .+|
T Consensus       268 p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p  336 (388)
T d1w3ba_         268 PHFP-------DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFP  336 (388)
T ss_dssp             SSCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT----SCT
T ss_pred             CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH----hCC
Confidence            6653       35788899999998544211     111       111234568889999999999999999    456


Q ss_pred             chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcccc
Q 008246          507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN  556 (572)
Q Consensus       507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~  556 (572)
                      ++.    .++..+|.+|...|++++|+++|+++++++|++.+.+.++.+.
T Consensus       337 ~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~  382 (388)
T d1w3ba_         337 EFA----AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             TCH----HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            543    5677899999999999999999999999999999988777663
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure