Citrus Sinensis ID: 008249
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 572 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L6Y3 | 593 | Pentatricopeptide repeat- | yes | no | 0.989 | 0.954 | 0.519 | 1e-166 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.763 | 0.589 | 0.325 | 2e-64 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.725 | 0.658 | 0.315 | 1e-62 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.737 | 0.681 | 0.303 | 4e-60 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.730 | 0.659 | 0.296 | 2e-59 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.725 | 0.659 | 0.296 | 4e-59 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.715 | 0.731 | 0.300 | 7e-59 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.725 | 0.656 | 0.294 | 2e-58 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.697 | 0.633 | 0.296 | 3e-58 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.708 | 0.659 | 0.303 | 2e-57 |
| >sp|Q8L6Y3|PP396_ARATH Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana GN=At5g24830 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 586 bits (1510), Expect = e-166, Method: Compositional matrix adjust.
Identities = 303/583 (51%), Positives = 402/583 (68%), Gaps = 17/583 (2%)
Query: 1 MALFIACGESSSPVHIQILRFLYQTFDSIKLNVAR----IFSNSRTCSDDDNLPCTLNDI 56
MAL I+CGE +S + R L Q+ D + NV+R IF+N R + L C +
Sbjct: 1 MALLISCGEVTSS-QFTVFRLLNQSLDFVSDNVSRLLAPIFTNLR--DFEMRLSC-IERP 56
Query: 57 MSYVGDQCRSKTRHWFSN-KDSDNEGNPQAVFNALDLILKENLDRLKTMRDTGPVRCTLE 115
S G+ T WFS+ KD D + +P+A+FN LD ILK +LDRL ++R++ V T
Sbjct: 57 PSISGNHSHLCTEKWFSDQKDYDQKEDPEAIFNVLDYILKSSLDRLASLRES--VCQTKS 114
Query: 116 TDY----RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEK 171
DY H +++RDLCL GK+ ALWLR+KMI G +P ++THN+L+N LCK G +EK
Sbjct: 115 FDYDDCLSIHSSIMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEK 174
Query: 172 ADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVH 231
AD ++REM EM PSPNC +YN I G C VN +DKAL+LF+TM GIRPNRVT NI+VH
Sbjct: 175 ADGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVH 234
Query: 232 ALCKKGLLGDA-VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290
ALC+KG++G+ K L E+L A D++ TILMDS FKNG+ QAL +W +M QK
Sbjct: 235 ALCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQK 294
Query: 291 NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350
N+ D V YNV+I G C +G++ +A+ + C M+KRG PDV TYNTL++ LCK+GK DEA
Sbjct: 295 NVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEA 354
Query: 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG 410
+G + GVAPDQISYK IIQGLCIHGD+ +A EFLLSML+ S++PE +WNV+IDG
Sbjct: 355 CDLHGTMQNGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDG 414
Query: 411 YGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD 470
YGR GD S+A S+ +LMLS+GV NV+T NALI +GG + DA+ +K EM I PD
Sbjct: 415 YGRYGDTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPD 474
Query: 471 VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFA 530
TYNLL+GA+C LGH+ LA QLYDEMLRRG PDIITYTEL++G C +G +K+AE + +
Sbjct: 475 TTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLS 534
Query: 531 KIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL-LRNK 572
+IQ G+ IDH+PF IL K+Y R++ +A +++KWL RN+
Sbjct: 535 RIQATGITIDHVPFLILAKKYTRLQRPGEAYLVYKKWLATRNR 577
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/440 (32%), Positives = 232/440 (52%), Gaps = 3/440 (0%)
Query: 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR 183
VI +C G+I A L M KG PDV++++ +VN C+ G+L+K +I M
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311
Query: 184 PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243
PN Y + I CR+ +L +A FS M GI P+ V + L+ CK+G + A
Sbjct: 312 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAAS 371
Query: 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303
KF E+ + D T DV+T T ++ + + GD +A L+++MF K ++ D V + LI
Sbjct: 372 KFFYEMHSRD---ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 428
Query: 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363
NG+C G + AF M++ G P+V+TY TL++ LCK+G LD A+ + K G+
Sbjct: 429 NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 488
Query: 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423
P+ +Y +I+ GLC G+I +A + + + + + ++D Y + G++ A I
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 548
Query: 424 RDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483
ML G+ + TFN L+ G + D L ML GI P+ T+N L+ C
Sbjct: 549 LKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI 608
Query: 484 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIP 543
++ A +Y +M RG+ PD TY L+KGHC NMKEA +F +++ G ++
Sbjct: 609 RNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST 668
Query: 544 FRILKKRYRRMKESDKARDI 563
+ +L K + + K+ +AR++
Sbjct: 669 YSVLIKGFLKRKKFLEAREV 688
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/418 (31%), Positives = 219/418 (52%), Gaps = 3/418 (0%)
Query: 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM 182
+I L L K A+ L +M+ KG PD++T+ +VN LCK GD + A +++ +M +
Sbjct: 191 TLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG 250
Query: 183 RPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242
+ P YN I G C+ +D AL+LF M GIRPN VT++ L+ LC G DA
Sbjct: 251 KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 310
Query: 243 VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL 302
+ L +++ + K DV T + L+D++ K G +A L+++M +++I IV Y+ L
Sbjct: 311 SRLLSDMI---ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367
Query: 303 INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGV 362
INGFC++ + A F M+ + PDV+TYNTL+ CK +++E + +S+ G+
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 427
Query: 363 APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422
+ ++Y +IQGL GD A+E M+ V P +N ++DG + G L A
Sbjct: 428 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487
Query: 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482
+ + + + ++T+N +I + G + D + L + L G+ PDV YN +I C
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547
Query: 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540
G A L+ EM G P+ Y LI+ G+ + + E+ ++++ G A D
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD 605
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (593), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 217/425 (51%), Gaps = 3/425 (0%)
Query: 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM 182
+I LCL G++ AL L +M++ G PD +T+ ++N LCK G+ A + R+M E
Sbjct: 180 TLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER 239
Query: 183 RPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242
+ Y+ I C+ D AL LF+ M GI+ + VT++ L+ LC G D
Sbjct: 240 NIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDG 299
Query: 243 VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL 302
K L E++ + DV+T + L+D + K G +A L+N+M + I D + YN L
Sbjct: 300 AKMLREMIGRN---IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSL 356
Query: 303 INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGV 362
I+GFC + A F M+ +G PD++TY+ L+N CK ++D+ + +S G+
Sbjct: 357 IDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 416
Query: 363 APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422
P+ I+Y T++ G C G + A+E M+ + V P + +++DG G+L+ A
Sbjct: 417 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 476
Query: 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482
I + M ++ + +N +I + DA+SL + G+ PDV TYN++IG C
Sbjct: 477 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 536
Query: 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542
G + A L+ +M G TPD TY LI+ H + + E+ +++ G + D
Sbjct: 537 KKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSS 596
Query: 543 PFRIL 547
+++
Sbjct: 597 TIKMV 601
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/425 (29%), Positives = 222/425 (52%), Gaps = 7/425 (1%)
Query: 114 LETDYR----RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDL 169
+E YR +I L L K A+ L +M+Q+G P+++T+ +VN LCK GD
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241
Query: 170 EKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNIL 229
+ A +++ +M + + +N I C+ +D AL+LF M GIRPN VT++ L
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301
Query: 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289
+ LC G DA + L +++ + K +++T L+D++ K G +A L++DM +
Sbjct: 302 ISCLCSYGRWSDASQLLSDMI---EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIK 358
Query: 290 KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDE 349
++I DI YN L+NGFC++ + A F M+ + PDV+TYNTL+ CK ++++
Sbjct: 359 RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVED 418
Query: 350 ASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID 409
+ + +S G+ D ++Y T+IQGL GD A++ M+ V P+ +++++D
Sbjct: 419 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 478
Query: 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFP 469
G G L A + D M + +++ + +I + G + D + L + L G+ P
Sbjct: 479 GLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP 538
Query: 470 DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVF 529
+V TYN +I C+ + A L +M G P+ TY LI+ H G+ + E+
Sbjct: 539 NVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELI 598
Query: 530 AKIQT 534
++++
Sbjct: 599 REMRS 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 229 bits (584), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 221/418 (52%), Gaps = 3/418 (0%)
Query: 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM 182
+I L L K A+ L +M+ +G PD+ T+ +VN LCK GD++ A ++++M +
Sbjct: 190 TLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG 249
Query: 183 RPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242
+ + Y I C ++ AL+LF+ M N GIRPN VT+N L+ LC G DA
Sbjct: 250 KIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDA 309
Query: 243 VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL 302
+ L +++ + K +V+T + L+D++ K G +A L+++M +++I DI Y+ L
Sbjct: 310 SRLLSDMI---ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366
Query: 303 INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGV 362
INGFC++ + A F M+ + P+V+TYNTL+ CK +++E + +S+ G+
Sbjct: 367 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426
Query: 363 APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422
+ ++Y T+IQGL GD A++ M+ V P+ +++++DG + G L A
Sbjct: 427 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 486
Query: 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482
+ + + + +++T+N +I + G + D + L + L G+ P+V Y +I C
Sbjct: 487 VFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC 546
Query: 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540
G A L+ EM G P+ TY LI+ G+ + E+ ++++ G D
Sbjct: 547 RKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGD 604
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 229 bits (583), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 217/412 (52%), Gaps = 3/412 (0%)
Query: 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM 182
+I L L K A+ L +M+Q+G P+++T+ +VN LCK GD++ A +++ +M
Sbjct: 120 TLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 179
Query: 183 RPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242
+ + +N I C+ +D AL+LF M GIRPN VT++ L+ LC G DA
Sbjct: 180 KIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDA 239
Query: 243 VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL 302
+ L +++ + K +++T L+D++ K G +A L +DM +++I DI YN L
Sbjct: 240 SQLLSDMI---EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296
Query: 303 INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGV 362
INGFC++ + A F M+ + PD+ TYNTL+ CK ++++ + + +S G+
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356
Query: 363 APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422
D ++Y T+IQGL GD A++ M+ V P+ +++++DG G L A
Sbjct: 357 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 416
Query: 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482
+ D M + +++ + +I + G + D + L + L G+ P+V TYN +I C
Sbjct: 417 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 476
Query: 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534
+ + A L +M G PD TY LI+ H G+ + E+ ++++
Sbjct: 477 SKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 528
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 223/418 (53%), Gaps = 3/418 (0%)
Query: 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM 182
+I L L K A+ L +M+Q+G PD++T+ +VN LCK GD++ A ++++M +
Sbjct: 193 TLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKG 252
Query: 183 RPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242
+ + YN I G C+ +D AL+LF+ M N GIRP+ T++ L+ LC G DA
Sbjct: 253 KIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 312
Query: 243 VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL 302
+ L +++ + K +V+T + L+D++ K G +A L+++M +++I DI Y+ L
Sbjct: 313 SRLLSDMI---ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 369
Query: 303 INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGV 362
INGFC++ + A F M+ + P+V+TY+TL+ CK +++E + +S+ G+
Sbjct: 370 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGL 429
Query: 363 APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422
+ ++Y T+I G D A+ M+ V P +N+++DG + G L+ A
Sbjct: 430 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMV 489
Query: 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482
+ + + + +++T+N +I + G + D + L + L G+ P+V YN +I C
Sbjct: 490 VFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFC 549
Query: 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540
G A L +M G P+ TY LI+ G+ + + E+ ++++ G A D
Sbjct: 550 RKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGD 607
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 215/402 (53%), Gaps = 3/402 (0%)
Query: 133 KIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192
+ A+ L +M+ KG PD++T+ +VN LCK GD++ A ++++M + + P YN
Sbjct: 201 RASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYN 260
Query: 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLAD 252
I C ++ AL+LF+ M N GIRPN VT+N L+ LC G DA + L +++
Sbjct: 261 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI-- 318
Query: 253 DDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312
+ K +V+T + L+D++ K G +A L+++M +++I DI Y+ LINGFC++ +
Sbjct: 319 -ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 313 SSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTI 372
A F M+ + P+V+TYNTL+ CK ++DE + +S+ G+ + ++Y T+
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 373 IQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV 432
I G + A+ M+ V+P+ +++++DG G + A + + + +
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497
Query: 433 SSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQ 492
+++T+N +I + G + D + L + L G+ P+V TY ++ C G A
Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 557
Query: 493 LYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534
L+ EM G PD TY LI+ H G+ + E+ ++++
Sbjct: 558 LFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 214/408 (52%), Gaps = 3/408 (0%)
Query: 133 KIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192
K A+ L +M+ KG PD++T+ ++N LCK G+ + A +++ +M + + + Y+
Sbjct: 185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYS 244
Query: 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLAD 252
I C+ +D AL+LF+ M N GIRP+ T++ L+ LC G DA + L ++L
Sbjct: 245 TVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML-- 302
Query: 253 DDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312
+ K +V+T L+D++ K G +A L+++M Q++I +IV YN LINGFC++ +
Sbjct: 303 -ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361
Query: 313 SSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTI 372
A F M+ + LPDV+TYNTL+N CK K+ + + +S+ G+ + ++Y T+
Sbjct: 362 DEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421
Query: 373 IQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV 432
I G D A+ M+ V P +N ++DG + G L A + + + +
Sbjct: 422 IHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKM 481
Query: 433 SSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQ 492
+++T+N + + G + D + L + L G+ PDV YN +I C G A
Sbjct: 482 EPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYT 541
Query: 493 LYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540
L+ +M G PD TY LI+ H G+ + E+ ++++ A D
Sbjct: 542 LFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGD 589
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 572 | ||||||
| 359495888 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.962 | 0.597 | 0.0 | |
| 255574125 | 621 | pentatricopeptide repeat-containing prot | 0.949 | 0.874 | 0.577 | 0.0 | |
| 449442212 | 633 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.887 | 0.538 | 1e-173 | |
| 297808491 | 588 | predicted protein [Arabidopsis lyrata su | 0.991 | 0.964 | 0.509 | 1e-166 | |
| 18420848 | 593 | pentatricopeptide repeat-containing prot | 0.989 | 0.954 | 0.519 | 1e-164 | |
| 26449752 | 593 | unknown protein [Arabidopsis thaliana] | 0.993 | 0.957 | 0.516 | 1e-164 | |
| 356546358 | 577 | PREDICTED: pentatricopeptide repeat-cont | 0.959 | 0.951 | 0.523 | 1e-158 | |
| 224115578 | 521 | predicted protein [Populus trichocarpa] | 0.846 | 0.928 | 0.556 | 1e-155 | |
| 296083392 | 451 | unnamed protein product [Vitis vinifera] | 0.718 | 0.911 | 0.577 | 1e-145 | |
| 449476143 | 749 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.777 | 0.594 | 0.308 | 5e-64 |
| >gi|359495888|ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/581 (59%), Positives = 430/581 (74%), Gaps = 23/581 (3%)
Query: 1 MALFIACGESSSPVHIQILRFLYQTFDSIKLNVARIFSN-----------SRTCSDDDNL 49
MAL I ES H+ R +SIK +VA+IF+N +R + L
Sbjct: 1 MALSIVFQES----HV-FFRLFNACIESIKHDVAQIFANVFSFKPYSPANNRPSGHGNLL 55
Query: 50 PCTLNDIMSYVGDQCRSKTRHWFS-NKDSDNEGNPQAVFNALDLILKENLDRLKTMRDT- 107
P L D++ VG+Q + T+ WFS NK D E +P+ VFN LD ILK++L+RLK MR++
Sbjct: 56 PFALEDLIISVGNQYQVTTQDWFSQNKGHDEERDPRVVFNVLDAILKDSLERLKMMRESV 115
Query: 108 -----GPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNE 162
G CTLE DY VA+IR+LCL GK+ ALWLR KMIQKG +PDVLTHNYLVN
Sbjct: 116 SLTKIGLNGCTLEMDYTGCVAMIRNLCLEGKLRAALWLRNKMIQKGVIPDVLTHNYLVNG 175
Query: 163 LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN 222
LCK GDLEKAD+++REM E+ PSPNCAT+N FI GYC N +DKAL+LFSTMAN+GI PN
Sbjct: 176 LCKAGDLEKADNLVREMLEIGPSPNCATFNTFIKGYCLNNNVDKALYLFSTMANSGIGPN 235
Query: 223 RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALA 282
+VT+NIL+HALCKKGLL DA K L ++L DD GK TSD+ITSTI MD K GD QAL
Sbjct: 236 KVTYNILIHALCKKGLLKDARKLLEKILDDDCGKETSDIITSTIFMDGCLKKGDMVQALV 295
Query: 283 LWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLC 342
W++M Q+ Q D+VAYNVLI+GFCL D++SA+ YFC+M KRG LPD+ TYNTL++ C
Sbjct: 296 HWDEMLQRGTQIDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFC 355
Query: 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH 402
K G LDEA + +GV+SK G APD ISYK IIQGLCIHGD+++A +FL+ MLE +VPEP
Sbjct: 356 KIGNLDEACYIHGVMSKMGAAPDLISYKMIIQGLCIHGDVIRANQFLVCMLENLMVPEPL 415
Query: 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEM 462
IWNV+IDG+GR GDLSNA SIRD M+SFG+ NVFT+NALI A+ +GG+I DA S+KKEM
Sbjct: 416 IWNVVIDGHGRHGDLSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHSIKKEM 475
Query: 463 LLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNM 522
LL+GI+PDV TYNLLIGA+CN G IH AL+LYDEMLRRG PDIITYTELI+G C RG++
Sbjct: 476 LLNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEMLRRGYEPDIITYTELIRGFCIRGHV 535
Query: 523 KEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDI 563
EAEE+ AK+Q GL+IDH PF+IL ++Y R + +A D+
Sbjct: 536 MEAEELLAKLQRSGLSIDHAPFQILIQKYCRTRVPGRAYDL 576
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574125|ref|XP_002527978.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532604|gb|EEF34390.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/558 (57%), Positives = 415/558 (74%), Gaps = 15/558 (2%)
Query: 2 ALFIACGESSSPVHIQILRFLYQTFDSIKLNVARIFSN--SRTCSDDDNLPCTLNDIMSY 59
AL I+CGESS+ HI +LR L + D+IK + A+IF+N R D N +D++
Sbjct: 3 ALLISCGESSASSHIFLLRLLDRAMDTIKHHTAQIFANIFCRESIIDPNASYFFDDMVKT 62
Query: 60 VGDQCRSKTRHWFSNKDSDNEGNPQAVFNALDLILKENLDRLKTMRDT--------GPVR 111
+ ++CR + NK+ ++E +PQ VFN LD +LK +L+RLK+MR++ G
Sbjct: 63 LSNRCRLRR----DNKNLNDEDDPQVVFNVLDAMLKGSLERLKSMRESIGISSVKVGLAG 118
Query: 112 CTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEK 171
+++ Y H +++RDLCL GK+G ALWLRRK++ KG VPD+LTHN+LVN LC GDL+K
Sbjct: 119 RSVDVSYAGHASLVRDLCLAGKLGAALWLRRKLLHKGFVPDILTHNFLVNGLCNSGDLQK 178
Query: 172 ADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVH 231
AD +I+EM E+ PSPNCAT+N FI GYC +N +DKAL+LFS+M+++G++PNRVT NILVH
Sbjct: 179 ADCLIKEMLEIGPSPNCATFNTFIKGYCLLNNVDKALYLFSSMSDSGVKPNRVTLNILVH 238
Query: 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291
ALCK+GLL DA K LGE+L DD+ KA ++ITSTILMD KNGD QAL +W M Q N
Sbjct: 239 ALCKRGLLEDAKKLLGELL-DDNEKARVNLITSTILMDGCIKNGDMVQALGIWYAMSQNN 297
Query: 292 IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS 351
D VAYNVLI+GFCL ++ A++Y C MLKRG LPD+ TYNTL++ LCK GKL EA
Sbjct: 298 TLMDSVAYNVLIHGFCLTRNMKLAYSYSCDMLKRGLLPDIFTYNTLISGLCKAGKLYEAC 357
Query: 352 HFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY 411
+ + V+ + GVAPDQISYK +IQGLC GD++KA E L MLEKS+VPE H+WN+IIDG+
Sbjct: 358 YIHDVMLRMGVAPDQISYKIVIQGLCTRGDVLKANEHLHCMLEKSMVPEAHVWNLIIDGF 417
Query: 412 GRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDV 471
RCGD +NAFSIRD MLSFGV NVFT+NALI A+ + G+I DA+SLKK ML G+FPDV
Sbjct: 418 ARCGDSANAFSIRDQMLSFGVVPNVFTYNALIHAQVKTGNIVDAYSLKKMMLCHGLFPDV 477
Query: 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAK 531
TYNLLIG +CN G I +A+QLY EMLR G PDIITYTELI+G C RGNMKEA+E+FAK
Sbjct: 478 ITYNLLIGTACNAGRISIAVQLYYEMLRSGHEPDIITYTELIRGLCMRGNMKEAKELFAK 537
Query: 532 IQTLGLAIDHIPFRILKK 549
+Q GL +DH+PF++L K
Sbjct: 538 LQNTGLTVDHVPFQLLIK 555
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442212|ref|XP_004138876.1| PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like [Cucumis sativus] gi|449499387|ref|XP_004160802.1| PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 313/581 (53%), Positives = 407/581 (70%), Gaps = 19/581 (3%)
Query: 6 ACGESSSPVHIQILRFLYQTFDSIKLNVARIFS----------NSRTCSDDDNLPCTLND 55
A S+P I +L FL+ +S+K +++R+F+ +R+ D+D+L L
Sbjct: 4 ALAIESAPSQILVLGFLHGALNSLKRDISRMFAVFYGRPDIDEAARSNEDEDSLHPALKS 63
Query: 56 IMSYVGDQCRSKTRHWFSNKDSDN-EGNPQAVFNALDLILKENLDRLKTMRDT------G 108
+M+ VGD C ++ FS K + N EG+P AVFN LD +LK +LDRLKTMR++ G
Sbjct: 64 LMTTVGDHCDLRSSDCFSEKRNFNGEGDPGAVFNVLDALLKGSLDRLKTMRESICLAKSG 123
Query: 109 PVRCTLE-TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG 167
+C LE T + ++RDLCL GK G AL LRRK+I++G D++THNYL+N LC
Sbjct: 124 LQKCVLEATQQPDYTVMVRDLCLKGKFGAALLLRRKLIKEGFAVDLVTHNYLLNGLCINC 183
Query: 168 DLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHN 227
D+E AD + REM EM PSPNCATYN I G+C +DKAL LF TM N+GIRP+R+T+N
Sbjct: 184 DMEMADSLFREMLEMGPSPNCATYNIIIKGFCLRMNMDKALDLFYTMVNSGIRPSRITYN 243
Query: 228 ILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDM 287
IL+HALCK+G+L DA K L EV+ DD K T D ITSTILMDS FK+GD QA+ALW+ M
Sbjct: 244 ILLHALCKRGILVDARKLL-EVILGDDIKTTDDAITSTILMDSCFKSGDTIQAVALWDKM 302
Query: 288 FQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL 347
+K + D+VAYNVLI+G CLN D A Y MLKRGFLPD+ TYNTL++ CK+G+
Sbjct: 303 VEKKTEIDVVAYNVLIHGLCLNQDKKIALGYVADMLKRGFLPDIFTYNTLISAFCKEGQF 362
Query: 348 DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVI 407
+A + + V+S+ GV+PDQI YK IIQ LC++GD +KA EFL SMLEKS+VPEPHIWN+I
Sbjct: 363 GDAYYIHDVMSRMGVSPDQILYKMIIQALCMNGDAIKADEFLHSMLEKSMVPEPHIWNLI 422
Query: 408 IDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGI 467
ID YGR G LSNA S RD ML GV NVFT+NALI A+ RGG+IF A+SLKKEMLL G+
Sbjct: 423 IDCYGRYGYLSNAISKRDQMLVAGVQPNVFTYNALIHAQVRGGNIFSAYSLKKEMLLLGL 482
Query: 468 FPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEE 527
FPDV TYNLLI +C G + ALQLYDEMLR+G D ITYTELI GHC G MKEAE+
Sbjct: 483 FPDVVTYNLLINGACKHGQLRFALQLYDEMLRKGYEADKITYTELINGHCMCGEMKEAED 542
Query: 528 VFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568
+F ++ GL +D +PF+++ ++Y+++ E D A +++ L
Sbjct: 543 LFFELHRSGLPMDIVPFKVIFEKYQKIGEPDMALKFYRRRL 583
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297808491|ref|XP_002872129.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297317966|gb|EFH48388.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/573 (50%), Positives = 396/573 (69%), Gaps = 6/573 (1%)
Query: 1 MALFIACGESSSPVHIQILRFLYQTFDSIKLNVARIFSNSRTCSDDDNLPCTLNDIMSYV 60
MALFI+CGE SS +LR L Q+ D + NV+RI + T D + + + S +
Sbjct: 1 MALFISCGEVSSS-QFTLLRLLNQSLDFVSDNVSRILAPIVTNLRDFEMRLSCIERPSSI 59
Query: 61 -GDQCRSKTRHWFSNKDSDNEGNPQAVFNALDLILKENLDRLKTMRDTGPVRCTLETD-- 117
G T WFS++ D + +P+A+FN LD ILK +LDRL ++R++ E D
Sbjct: 60 SGKHSHLCTEKWFSDQ-KDQKRDPEAIFNVLDYILKSSLDRLASLRESVCQTKNFEYDDS 118
Query: 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIR 177
H +++RDLCL GK+ ALWLR KM++ G +P ++ HN+L+N LCK+G +EKAD ++R
Sbjct: 119 LSIHSSIMRDLCLQGKMDAALWLREKMLRSGFIPGLIMHNHLLNGLCKLGYIEKADGLVR 178
Query: 178 EMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG 237
EM EM PSPNC +YN I G C VN +DKAL+LFST+ GI+PNRVT NI+VHALC+KG
Sbjct: 179 EMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFSTLNKYGIKPNRVTCNIIVHALCQKG 238
Query: 238 LLGDA-VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI 296
++G+ K L E+L A D++T TILMDS FKNG+ QAL +W +M QKN+ TD
Sbjct: 239 VIGNNNTKLLEEILDSSQVNAPLDIVTCTILMDSCFKNGNVVQALEVWKEMSQKNVPTDS 298
Query: 297 VAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGV 356
V YNV+I G C +G++ +A+ + C M+KRG PDV TYNTL++ LCK GK D A +G
Sbjct: 299 VVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKAGKFDVACDLHGT 358
Query: 357 LSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD 416
+ GVAPDQISYK IIQGLCI GD+ +A EFL SML++S++PE +WNV+IDGYGR GD
Sbjct: 359 MQNVGVAPDQISYKVIIQGLCIQGDVDRANEFLQSMLKRSLLPEVLLWNVVIDGYGRYGD 418
Query: 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNL 476
S A S+ +LMLS+GV NV+T NALI +GG + DA+ +K EM I PD TYNL
Sbjct: 419 TSCALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNL 478
Query: 477 LIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 536
L+GA+C LGH+ LA QLYDEML+RG PDIITYTEL++G C +G +KEAE + +++Q G
Sbjct: 479 LVGAACTLGHLRLAFQLYDEMLKRGCQPDIITYTELVRGLCWKGRLKEAESLLSRMQVSG 538
Query: 537 LAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569
+ +DH+PF IL K+Y R++ D+A +++KWL+
Sbjct: 539 ITMDHVPFLILVKKYTRLQRPDEAYLVYKKWLV 571
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18420848|ref|NP_568460.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75154065|sp|Q8L6Y3.1|PP396_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g24830 gi|22655280|gb|AAM98230.1| putative protein [Arabidopsis thaliana] gi|30725398|gb|AAP37721.1| At5g24830 [Arabidopsis thaliana] gi|332005984|gb|AED93367.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 303/583 (51%), Positives = 402/583 (68%), Gaps = 17/583 (2%)
Query: 1 MALFIACGESSSPVHIQILRFLYQTFDSIKLNVAR----IFSNSRTCSDDDNLPCTLNDI 56
MAL I+CGE +S + R L Q+ D + NV+R IF+N R + L C +
Sbjct: 1 MALLISCGEVTSS-QFTVFRLLNQSLDFVSDNVSRLLAPIFTNLR--DFEMRLSC-IERP 56
Query: 57 MSYVGDQCRSKTRHWFSN-KDSDNEGNPQAVFNALDLILKENLDRLKTMRDTGPVRCTLE 115
S G+ T WFS+ KD D + +P+A+FN LD ILK +LDRL ++R++ V T
Sbjct: 57 PSISGNHSHLCTEKWFSDQKDYDQKEDPEAIFNVLDYILKSSLDRLASLRES--VCQTKS 114
Query: 116 TDY----RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEK 171
DY H +++RDLCL GK+ ALWLR+KMI G +P ++THN+L+N LCK G +EK
Sbjct: 115 FDYDDCLSIHSSIMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEK 174
Query: 172 ADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVH 231
AD ++REM EM PSPNC +YN I G C VN +DKAL+LF+TM GIRPNRVT NI+VH
Sbjct: 175 ADGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVH 234
Query: 232 ALCKKGLLGDA-VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290
ALC+KG++G+ K L E+L A D++ TILMDS FKNG+ QAL +W +M QK
Sbjct: 235 ALCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQK 294
Query: 291 NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350
N+ D V YNV+I G C +G++ +A+ + C M+KRG PDV TYNTL++ LCK+GK DEA
Sbjct: 295 NVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEA 354
Query: 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG 410
+G + GVAPDQISYK IIQGLCIHGD+ +A EFLLSML+ S++PE +WNV+IDG
Sbjct: 355 CDLHGTMQNGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDG 414
Query: 411 YGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD 470
YGR GD S+A S+ +LMLS+GV NV+T NALI +GG + DA+ +K EM I PD
Sbjct: 415 YGRYGDTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPD 474
Query: 471 VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFA 530
TYNLL+GA+C LGH+ LA QLYDEMLRRG PDIITYTEL++G C +G +K+AE + +
Sbjct: 475 TTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLS 534
Query: 531 KIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL-LRNK 572
+IQ G+ IDH+PF IL K+Y R++ +A +++KWL RN+
Sbjct: 535 RIQATGITIDHVPFLILAKKYTRLQRPGEAYLVYKKWLATRNR 577
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|26449752|dbj|BAC41999.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 300/581 (51%), Positives = 401/581 (69%), Gaps = 13/581 (2%)
Query: 1 MALFIACGESSSPVHIQILRFLYQTFDSIKLNVAR----IFSNSRTCSDDDNLPCTLNDI 56
MAL I+CGE +S + R L Q+ D + NV+R IF+N R + L C +
Sbjct: 1 MALLISCGEVTSS-QFTVFRLLNQSLDFVSDNVSRLLAPIFTNLRDL--EMRLSC-IERP 56
Query: 57 MSYVGDQCRSKTRHWFSN-KDSDNEGNPQAVFNALDLILKENLDRLKTMRDTGPVRCTLE 115
S G+ T WFS+ KD D + +P+A+FN LD ILK +LDRL ++R++ + +
Sbjct: 57 PSISGNHSHLCTEKWFSDQKDYDQKEDPEAIFNVLDYILKSSLDRLASLRESVCQAKSFD 116
Query: 116 TD--YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKAD 173
D H +++RDLCL GK+ ALWLR+KMI G +P ++THN+L+N LCK G +EKAD
Sbjct: 117 YDDCLSIHSSIMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEKAD 176
Query: 174 HVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHAL 233
++REM EM PSPNC +YN I G C VN +DKAL+LF+TM GIRPNRVT NI+VHAL
Sbjct: 177 GLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVHAL 236
Query: 234 CKKGLLGDA-VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI 292
C+KG++G+ K L E+L A D++ TILMDS FKNG+ QAL +W +M QKN+
Sbjct: 237 CQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQKNV 296
Query: 293 QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASH 352
D V YNV+I G C +G++ +A+ + C M+KRG PDV TYNTL++ LCK+GK DEA
Sbjct: 297 PADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEACD 356
Query: 353 FYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYG 412
+G + GVAPDQISYK IIQGLCIHGD+ +A EFLLSML+ S++PE +WNV+IDGYG
Sbjct: 357 LHGTMQNGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDGYG 416
Query: 413 RCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVF 472
R GD S+A S+ +LMLS+GV NV+T NALI +GG + DA+ +K EM I PD
Sbjct: 417 RYGDTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTT 476
Query: 473 TYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKI 532
TYNLL+GA+C LGH+ LA QLYDEMLRRG PDIITYTEL++G C +G +K+AE + ++I
Sbjct: 477 TYNLLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLSRI 536
Query: 533 QTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL-LRNK 572
Q G+ IDH+PF IL K+Y R++ +A +++KWL RN+
Sbjct: 537 QATGITIDHVPFLILAKKYTRLQRPGEAYLVYKKWLATRNR 577
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546358|ref|XP_003541593.1| PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 294/562 (52%), Positives = 374/562 (66%), Gaps = 13/562 (2%)
Query: 19 LRFLYQTFDSIKLNV-ARIFSNSRTCSDDDNLPCTLNDIMSYVGDQCRSKTRHWFSNKDS 77
L FL +TF SIK + ARI + ++D S +C SN
Sbjct: 17 LIFLNRTFLSIKRRLLARILRYQNDAVAHSRIFREVDD--SATEKKCELNAGDCLSN--- 71
Query: 78 DNEGNPQAVFNALDLILKENLDRLKTMRD------TG-PVRCTLETDYRRHVAVIRDLCL 130
D AVFNALD +LK++L+RLK MR+ TG + E+ Y A IR LCL
Sbjct: 72 DGGNGRHAVFNALDTMLKDSLERLKMMRENLCLVKTGLTIGYACESKYAEDTATIRRLCL 131
Query: 131 GGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCAT 190
GK+G A+WL KM QKG V DV THN++VN LCKIG L+KAD V+REM E P PNCAT
Sbjct: 132 DGKLGAAVWLWGKMAQKGVVSDVFTHNHIVNGLCKIGLLDKADLVVREMLEFGPRPNCAT 191
Query: 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVL 250
YN I GYC VN +D+AL+LFSTM GI PNRVT ILVHALC+KGLL +A + L EVL
Sbjct: 192 YNTLIKGYCAVNGVDRALYLFSTMTYAGILPNRVTCRILVHALCEKGLLMEAKRMLEEVL 251
Query: 251 ADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG 310
DDD K D++ ST+ MDSYFK+G QAL LWN M Q + D+VAYNVLINGFC +
Sbjct: 252 KDDDEKDIPDLVISTVFMDSYFKDGAIIQALNLWNQMLQNCTKVDVVAYNVLINGFCKSQ 311
Query: 311 DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYK 370
++ A+ Y C+M K+G LPD TYN ++ LCK+GK+ EA + GV+S G+ PDQI+Y+
Sbjct: 312 QMNLAYGYACEMFKKGLLPDAFTYNIIIGALCKEGKISEACYTVGVMSNMGIMPDQITYQ 371
Query: 371 TIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430
+I+GLC G+IV+A+ L ML +VP+P IWN+IID YGR DLSNAF RD MLSF
Sbjct: 372 IVIRGLCFAGEIVRAKHLLWCMLNNLMVPKPLIWNLIIDLYGRYNDLSNAFFTRDQMLSF 431
Query: 431 GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLA 490
GV NVFT+NALILA+ + G+ A SLK+EM+ +FPDV TYNLLIGA+CN+G + A
Sbjct: 432 GVCPNVFTYNALILAQVKSGNFHGACSLKEEMISKCLFPDVVTYNLLIGAACNIGRLDFA 491
Query: 491 LQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKR 550
L L+D+M++RG PD+ITYTEL++G C RG MKEAEE++AKI GL DH+P +IL +
Sbjct: 492 LLLHDQMVQRGYEPDLITYTELVRGFCIRGKMKEAEELYAKILKSGLLNDHVPVQILFNK 551
Query: 551 YRRMKESDKARDIHQKWLLRNK 572
Y ++KE A + +Q WL K
Sbjct: 552 YCKLKEPVIAFNFYQDWLESKK 573
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115578|ref|XP_002332091.1| predicted protein [Populus trichocarpa] gi|222874911|gb|EEF12042.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 284/510 (55%), Positives = 362/510 (70%), Gaps = 26/510 (5%)
Query: 73 SNKDSDNEGNPQAVFNALDLILKENLDRLKTMR--------DTGPVRCTLETDYRRHVAV 124
+NK D G VFN LD +LK +LDRLK+MR G C L+ + + A+
Sbjct: 11 NNKQGDGGGGDPLVFNVLDSMLKGSLDRLKSMRLQFVSFLYGKGITGCALDVNCAGNEAI 70
Query: 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRP 184
I+DLCLGGK+G ALWLR KMIQKG VPDVLTHNY+VN LCK+ +LEKAD +IREM + P
Sbjct: 71 IKDLCLGGKLGPALWLRSKMIQKGFVPDVLTHNYMVNGLCKMIELEKADWLIREMLDKGP 130
Query: 185 SPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVK 244
SPNCATYN FI GYC ++++DKALHLFS+MAN+G +PNRVT N L+HALCKK LL + K
Sbjct: 131 SPNCATYNTFIKGYCLLDKVDKALHLFSSMANSGTKPNRVTFNTLLHALCKKDLLTEGKK 190
Query: 245 FLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304
LGE+L DDG+ + +F ++ + A + + +NV
Sbjct: 191 LLGEIL--DDGRKGNIKCYHLNYTYGWFYQEWRYSSGAWY------------LGFNV--G 234
Query: 305 GFCLNG--DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGV 362
G NG ++ A++Y CQMLK G LPDV TYNTL++ LCK GKLDEA + + V+ + GV
Sbjct: 235 GGYPNGSREMKLAYSYSCQMLKMGLLPDVFTYNTLVSSLCKSGKLDEACYMHDVMLRMGV 294
Query: 363 APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422
APD++SYK IIQGLC+ GD+ KA +L LEKS++PEP +WN+IIDGYGRCGD+ NAF+
Sbjct: 295 APDEVSYKLIIQGLCVCGDVDKANGYLNCTLEKSMIPEPLVWNLIIDGYGRCGDICNAFA 354
Query: 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482
IRD MLSFGV NVFT+NALI A+ + G+I A+ LKK+MLL G+FPDV TYNLLIGA+
Sbjct: 355 IRDRMLSFGVVPNVFTYNALIHAQVKIGNILYAYFLKKDMLLKGLFPDVVTYNLLIGAAA 414
Query: 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542
+ GHIH ALQLYDEMLR G PD+ITYTELI+G+C + N KEAEE+ AK+ GL IDH+
Sbjct: 415 HAGHIHYALQLYDEMLRGGCNPDMITYTELIRGYCVKYNTKEAEELLAKLLKSGLLIDHV 474
Query: 543 PFRILKKRYRRMKESDKARDIHQKWLLRNK 572
PF+IL K+Y +MKE D+A +++KWL NK
Sbjct: 475 PFQILIKQYCKMKEPDRAFQLYRKWLTGNK 504
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296083392|emb|CBI23347.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 261/452 (57%), Positives = 322/452 (71%), Gaps = 41/452 (9%)
Query: 112 CTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEK 171
CTLE DY VA+IR+LCL GK+ ALWLR KMIQKG +PDVLTHNYLVN LCK GDLEK
Sbjct: 18 CTLEMDYTGCVAMIRNLCLEGKLRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEK 77
Query: 172 ADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVH 231
AD+++REM E+ PSPNCAT+N FI GYC N +DKAL+LFSTMAN+GI PN+VT+NIL+H
Sbjct: 78 ADNLVREMLEIGPSPNCATFNTFIKGYCLNNNVDKALYLFSTMANSGIGPNKVTYNILIH 137
Query: 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291
ALCKKGLL DA K L ++L DD GK TSD+ITSTI MD K GD QAL W++M Q+
Sbjct: 138 ALCKKGLLKDARKLLEKILDDDCGKETSDIITSTIFMDGCLKKGDMVQALVHWDEMLQRG 197
Query: 292 IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS 351
Q D+VAYNVLI+GFCL D++SA+ YFC+M KRG LPD+ TYNTL++ CK G LDEA
Sbjct: 198 TQIDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCKIGNLDEAC 257
Query: 352 HFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY 411
+ +GV+SK G APD ISYK IIQGLCIHGD+++A +FL+ MLE +VPEP IWNV+IDG+
Sbjct: 258 YIHGVMSKMGAAPDLISYKMIIQGLCIHGDVIRANQFLVCMLENLMVPEPLIWNVVIDGH 317
Query: 412 GRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDV 471
GR GDLSNA SIRD M+SFG+ NVFT+NALI A+ +GG+I DA S+KKEMLL+GI+PD
Sbjct: 318 GRHGDLSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVDAHSIKKEMLLNGIYPD- 376
Query: 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAK 531
LI C GH+ A +L ++ R G
Sbjct: 377 -----LIRGFCIRGHVMEAEELLAKLQRSG------------------------------ 401
Query: 532 IQTLGLAIDHIPFRILKKRYRRMKESDKARDI 563
L+IDH PF+IL ++Y R + +A D+
Sbjct: 402 -----LSIDHAPFQILIQKYCRTRVPGRAYDL 428
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g01110-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 138/448 (30%), Positives = 234/448 (52%), Gaps = 3/448 (0%)
Query: 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM 182
+I C G + A L +G P +LT+N ++ LCKIG ++A V+ EM ++
Sbjct: 297 TLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQL 356
Query: 183 RPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242
+PN ATYN + CR + + +A +F M+ G+ P+ V+ + L+ L + G L A
Sbjct: 357 GLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQA 416
Query: 243 VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL 302
+ E+ + D + TIL+D + +NG AL + ++M + D+V YN
Sbjct: 417 LMHFREM---ERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTF 473
Query: 303 INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGV 362
+NG C + A F +M++RG +PD T+ TL+ CK G +D+A + + + +T +
Sbjct: 474 LNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533
Query: 363 APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422
PD+++Y T+I G C G++ +A+E M+ K ++P+ + +++G+ G L A +
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593
Query: 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482
+ D ML G+ N+ T N LI R G + A+ +M+ +GI PD F+YN LI
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYL 653
Query: 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542
++ A L +EM +RG+ +IITY ++ G CA G M+EAE+V K+ +G+ D
Sbjct: 654 KEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGA 713
Query: 543 PFRILKKRYRRMKESDKARDIHQKWLLR 570
+ L + +A H + L R
Sbjct: 714 TYSSLINGHVSQDNMKEAFRFHDEMLQR 741
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 572 | ||||||
| TAIR|locus:2149433 | 593 | AT5G24830 [Arabidopsis thalian | 0.989 | 0.954 | 0.519 | 4.3e-157 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.723 | 0.657 | 0.316 | 1e-59 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.723 | 0.668 | 0.309 | 3.2e-58 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.713 | 0.643 | 0.299 | 3.6e-57 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.723 | 0.658 | 0.297 | 2e-56 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.713 | 0.647 | 0.294 | 1.4e-55 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.723 | 0.674 | 0.299 | 1.8e-55 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.723 | 0.649 | 0.294 | 1.6e-54 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.676 | 0.518 | 0.301 | 2.1e-54 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.699 | 0.621 | 0.295 | 2.6e-54 |
| TAIR|locus:2149433 AT5G24830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1531 (544.0 bits), Expect = 4.3e-157, P = 4.3e-157
Identities = 303/583 (51%), Positives = 402/583 (68%)
Query: 1 MALFIACGESSSPVHIQILRFLYQTFDSIKLNVAR----IFSNSRTCSDDDNLPCTLNDI 56
MAL I+CGE +S + R L Q+ D + NV+R IF+N R + L C +
Sbjct: 1 MALLISCGEVTSS-QFTVFRLLNQSLDFVSDNVSRLLAPIFTNLRDF--EMRLSC-IERP 56
Query: 57 MSYVGDQCRSKTRHWFSN-KDSDNEGNPQAVFNALDLILKENLDRLKTMRDTGPVRCTLE 115
S G+ T WFS+ KD D + +P+A+FN LD ILK +LDRL ++R++ V T
Sbjct: 57 PSISGNHSHLCTEKWFSDQKDYDQKEDPEAIFNVLDYILKSSLDRLASLRES--VCQTKS 114
Query: 116 TDYRR----HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEK 171
DY H +++RDLCL GK+ ALWLR+KMI G +P ++THN+L+N LCK G +EK
Sbjct: 115 FDYDDCLSIHSSIMRDLCLQGKLDAALWLRKKMIYSGVIPGLITHNHLLNGLCKAGYIEK 174
Query: 172 ADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVH 231
AD ++REM EM PSPNC +YN I G C VN +DKAL+LF+TM GIRPNRVT NI+VH
Sbjct: 175 ADGLVREMREMGPSPNCVSYNTLIKGLCSVNNVDKALYLFNTMNKYGIRPNRVTCNIIVH 234
Query: 232 ALCKKGLLGDA-VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290
ALC+KG++G+ K L E+L A D++ TILMDS FKNG+ QAL +W +M QK
Sbjct: 235 ALCQKGVIGNNNKKLLEEILDSSQANAPLDIVICTILMDSCFKNGNVVQALEVWKEMSQK 294
Query: 291 NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350
N+ D V YNV+I G C +G++ +A+ + C M+KRG PDV TYNTL++ LCK+GK DEA
Sbjct: 295 NVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLISALCKEGKFDEA 354
Query: 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG 410
+G + GVAPDQISYK IIQGLCIHGD+ +A EFLLSML+ S++PE +WNV+IDG
Sbjct: 355 CDLHGTMQNGGVAPDQISYKVIIQGLCIHGDVNRANEFLLSMLKSSLLPEVLLWNVVIDG 414
Query: 411 YGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD 470
YGR GD S+A S+ +LMLS+GV NV+T NALI +GG + DA+ +K EM I PD
Sbjct: 415 YGRYGDTSSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPD 474
Query: 471 VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFA 530
TYNLL+GA+C LGH+ LA QLYDEMLRRG PDIITYTEL++G C +G +K+AE + +
Sbjct: 475 TTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLCWKGRLKKAESLLS 534
Query: 531 KIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL-RNK 572
+IQ G+ IDH+PF IL K+Y R++ +A +++KWL RN+
Sbjct: 535 RIQATGITIDHVPFLILAKKYTRLQRPGEAYLVYKKWLATRNR 577
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 132/417 (31%), Positives = 219/417 (52%)
Query: 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR 183
+I L L K A+ L +M+ KG PD++T+ +VN LCK GD + A +++ +M + +
Sbjct: 192 LIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGK 251
Query: 184 PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243
P YN I G C+ +D AL+LF M GIRPN VT++ L+ LC G DA
Sbjct: 252 LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDAS 311
Query: 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303
+ L +++ + K DV T + L+D++ K G +A L+++M +++I IV Y+ LI
Sbjct: 312 RLLSDMI---ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 368
Query: 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363
NGFC++ + A F M+ + PDV+TYNTL+ CK +++E + +S+ G+
Sbjct: 369 NGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLV 428
Query: 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423
+ ++Y +IQGL GD A+E M+ V P +N ++DG + G L A +
Sbjct: 429 GNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVV 488
Query: 424 RDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483
+ + + ++T+N +I + G + D + L + L G+ PDV YN +I C
Sbjct: 489 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 548
Query: 484 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540
G A L+ EM G P+ Y LI+ G+ + + E+ ++++ G A D
Sbjct: 549 KGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGD 605
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 129/417 (30%), Positives = 214/417 (51%)
Query: 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR 183
+I LCL G++ AL L +M++ G PD +T+ ++N LCK G+ A + R+M E
Sbjct: 181 LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN 240
Query: 184 PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243
+ Y+ I C+ D AL LF+ M GI+ + VT++ L+ LC G D
Sbjct: 241 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA 300
Query: 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303
K L E++ + DV+T + L+D + K G +A L+N+M + I D + YN LI
Sbjct: 301 KMLREMIGRN---IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 357
Query: 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363
+GFC + A F M+ +G PD++TY+ L+N CK ++D+ + +S G+
Sbjct: 358 DGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLI 417
Query: 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423
P+ I+Y T++ G C G + A+E M+ + V P + +++DG G+L+ A I
Sbjct: 418 PNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEI 477
Query: 424 RDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483
+ M ++ + +N +I + DA+SL + G+ PDV TYN++IG C
Sbjct: 478 FEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCK 537
Query: 484 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540
G + A L+ +M G TPD TY LI+ H + + E+ +++ G + D
Sbjct: 538 KGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSAD 594
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
Identities = 123/411 (29%), Positives = 218/411 (53%)
Query: 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR 183
+I L L K A+ L +M+Q+G P+++T+ +VN LCK GD + A +++ +M +
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK 255
Query: 184 PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243
+ +N I C+ +D AL+LF M GIRPN VT++ L+ LC G DA
Sbjct: 256 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 315
Query: 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303
+ L +++ + K +++T L+D++ K G +A L++DM +++I DI YN L+
Sbjct: 316 QLLSDMI---EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLV 372
Query: 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363
NGFC++ + A F M+ + PDV+TYNTL+ CK ++++ + + +S G+
Sbjct: 373 NGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 432
Query: 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423
D ++Y T+IQGL GD A++ M+ V P+ +++++DG G L A +
Sbjct: 433 GDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEV 492
Query: 424 RDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483
D M + +++ + +I + G + D + L + L G+ P+V TYN +I C+
Sbjct: 493 FDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCS 552
Query: 484 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534
+ A L +M G P+ TY LI+ H G+ + E+ ++++
Sbjct: 553 KRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 124/417 (29%), Positives = 221/417 (52%)
Query: 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR 183
+I L L K A+ L +M+ +G PD+ T+ +VN LCK GD++ A ++++M + +
Sbjct: 191 LIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGK 250
Query: 184 PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243
+ Y I C ++ AL+LF+ M N GIRPN VT+N L+ LC G DA
Sbjct: 251 IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 310
Query: 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303
+ L +++ + K +V+T + L+D++ K G +A L+++M +++I DI Y+ LI
Sbjct: 311 RLLSDMI---ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 367
Query: 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363
NGFC++ + A F M+ + P+V+TYNTL+ CK +++E + +S+ G+
Sbjct: 368 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 427
Query: 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423
+ ++Y T+IQGL GD A++ M+ V P+ +++++DG + G L A +
Sbjct: 428 GNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVV 487
Query: 424 RDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483
+ + + +++T+N +I + G + D + L + L G+ P+V Y +I C
Sbjct: 488 FEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCR 547
Query: 484 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540
G A L+ EM G P+ TY LI+ G+ + E+ ++++ G D
Sbjct: 548 KGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGD 604
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 121/411 (29%), Positives = 218/411 (53%)
Query: 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR 183
+I L + A+ L +M+ KG PD++T+ +VN LCK GD++ A ++++M + +
Sbjct: 192 LIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGK 251
Query: 184 PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243
P YN I C ++ AL+LF+ M N GIRPN VT+N L+ LC G DA
Sbjct: 252 IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDAS 311
Query: 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303
+ L +++ + K +V+T + L+D++ K G +A L+++M +++I DI Y+ LI
Sbjct: 312 RLLSDMI---ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 368
Query: 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363
NGFC++ + A F M+ + P+V+TYNTL+ CK ++DE + +S+ G+
Sbjct: 369 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLV 428
Query: 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423
+ ++Y T+I G + A+ M+ V+P+ +++++DG G + A +
Sbjct: 429 GNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVV 488
Query: 424 RDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483
+ + + +++T+N +I + G + D + L + L G+ P+V TY ++ C
Sbjct: 489 FEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 548
Query: 484 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534
G A L+ EM G PD TY LI+ H G+ + E+ ++++
Sbjct: 549 KGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 125/417 (29%), Positives = 217/417 (52%)
Query: 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR 183
++ L K A+ L +M+ KG PD++T+ ++N LCK G+ + A +++ +M + +
Sbjct: 176 LVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGK 235
Query: 184 PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243
+ Y+ I C+ +D AL+LF+ M N GIRP+ T++ L+ LC G DA
Sbjct: 236 IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDAS 295
Query: 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303
+ L ++L + K +V+T L+D++ K G +A L+++M Q++I +IV YN LI
Sbjct: 296 RLLSDML---ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLI 352
Query: 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363
NGFC++ + A F M+ + LPDV+TYNTL+N CK K+ + + +S+ G+
Sbjct: 353 NGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLV 412
Query: 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423
+ ++Y T+I G D A+ M+ V P +N ++DG + G L A +
Sbjct: 413 GNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVV 472
Query: 424 RDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483
+ + + +++T+N + + G + D + L + L G+ PDV YN +I C
Sbjct: 473 FEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCK 532
Query: 484 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540
G A L+ +M G PD TY LI+ H G+ + E+ ++++ A D
Sbjct: 533 KGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGD 589
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 123/417 (29%), Positives = 210/417 (50%)
Query: 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR 183
++ LCL GK A+ L KM++ G P+ +T+ ++N +CK G A ++R+M E
Sbjct: 199 LVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN 258
Query: 184 PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243
+ Y+ I G C+ LD A +LF+ M GI N +T+NIL+ C G D
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318
Query: 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303
K L +++ K +V+T ++L+DS+ K G +A L +M + I D + Y LI
Sbjct: 319 KLLRDMIKR---KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLI 375
Query: 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363
+GFC + A M+ +G P++ T+N L+N CK ++D+ + +S GV
Sbjct: 376 DGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVV 435
Query: 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423
D ++Y T+IQG C G + A+E M+ + V P + +++DG G+ A I
Sbjct: 436 ADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEI 495
Query: 424 RDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483
+ + + ++ +N +I + DA+ L + L G+ P V TYN++IG C
Sbjct: 496 FEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCK 555
Query: 484 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540
G + A L+ +M G PD TY LI+ H G+ ++ ++ +++ G ++D
Sbjct: 556 KGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVD 612
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 118/392 (30%), Positives = 212/392 (54%)
Query: 142 RKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201
++M++ P+V T+N L+ C G+++ A + +M PN TYN I GYC++
Sbjct: 194 KEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL 253
Query: 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATS-D 260
++D L +MA G+ PN +++N++++ LC++G + + V F VL + + + S D
Sbjct: 254 RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKE-VSF---VLTEMNRRGYSLD 309
Query: 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFC 320
+T L+ Y K G+ QAL + +M + + ++ Y LI+ C G+++ A +
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLD 369
Query: 321 QMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380
QM RG P+ TY TL++ ++G ++EA ++ G +P ++Y +I G C+ G
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTG 429
Query: 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFN 440
+ A L M EK + P+ ++ ++ G+ R D+ A ++ M+ G+ + T++
Sbjct: 430 KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS 489
Query: 441 ALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR 500
+LI +A L +EML G+ PD FTY LI A C G + ALQL++EM+ +
Sbjct: 490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549
Query: 501 GITPDIITYTELIKGHCARGNMKEAEEVFAKI 532
G+ PD++TY+ LI G + +EA+ + K+
Sbjct: 550 GVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 119/403 (29%), Positives = 211/403 (52%)
Query: 138 LWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197
L L ++M KG + T + ++N C+ L A + ++ ++ P+ +N + G
Sbjct: 108 LALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNG 167
Query: 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKA 257
C + +AL L M G +P +T N LV+ LC G + DAV + ++ + G
Sbjct: 168 LCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV--ETGFQ 225
Query: 258 TSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFA 317
++V +L + K+G A+ L M ++NI+ D V Y+++I+G C +G + +AF
Sbjct: 226 PNEVTYGPVL-NVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFN 284
Query: 318 YFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377
F +M +GF D+ITYNTL+ C G+ D+ + + K ++P+ +++ +I
Sbjct: 285 LFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFV 344
Query: 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVF 437
G + +A + L M+++ + P +N +IDG+ + L A + DLM+S G ++
Sbjct: 345 KEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIM 404
Query: 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497
TFN LI + I D L +EM L G+ + TYN L+ C G + +A +L+ EM
Sbjct: 405 TFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM 464
Query: 498 LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540
+ R + PDI++Y L+ G C G +++A E+F KI+ + +D
Sbjct: 465 VSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELD 507
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L6Y3 | PP396_ARATH | No assigned EC number | 0.5197 | 0.9895 | 0.9544 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 572 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam10037 | 417 | pfam10037, MRP-S27, Mitochondrial 28S ribosomal pr | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-25
Identities = 75/312 (24%), Positives = 148/312 (47%), Gaps = 10/312 (3%)
Query: 258 TSDVITSTILMDSYFKNGDKFQAL-ALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAF 316
+D T L+ + K+G K A+ ++++M ++ ++ + LI+G G ++ AF
Sbjct: 469 KADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527
Query: 317 AYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK-----TGVAPDQISYKT 371
+ M + PD + +N L++ + G +D A + VL++ + PD I+
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLAEMKAETHPIDPDHITVGA 584
Query: 372 IIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG 431
+++ G + +A+E + E ++ P ++ + ++ + GD A SI D M G
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 432 VSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLAL 491
V + F+AL+ G + AF + ++ GI +Y+ L+GA N + AL
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704
Query: 492 QLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551
+LY+++ + P + T LI C + +A EV ++++ LGL + I + IL
Sbjct: 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
Query: 552 RRMKESDKARDI 563
R ++D D+
Sbjct: 765 ERKDDADVGLDL 776
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 3e-22
Identities = 90/375 (24%), Positives = 148/375 (39%), Gaps = 43/375 (11%)
Query: 148 GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKA 207
G D + L++ K G ++ V EM N T+ A I G R ++ KA
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 208 LHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKAT---SDVITS 264
+ M + ++P+RV N L+ A + G AV +VLA+ + D IT
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSG----AVDRAFDVLAEMKAETHPIDPDHITV 582
Query: 265 TILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324
LM + G +A ++ + + NI+ Y + +N GD A + + M K
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642
Query: 325 RGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVK 384
+G PD + ++ L++ G LD+A K G+ +SY +++ + K
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 385 AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL 444
A L + E I+ + L VS T NALI
Sbjct: 703 A----LELYED---------------------------IKSIKLRPTVS----TMNALIT 727
Query: 445 AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITP 504
A G + A + EM G+ P+ TY++L+ AS + L L + GI P
Sbjct: 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787
Query: 505 DIITYTELIKGHCAR 519
+++ + G C R
Sbjct: 788 NLVMCRCIT-GLCLR 801
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 6e-20
Identities = 107/418 (25%), Positives = 175/418 (41%), Gaps = 60/418 (14%)
Query: 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLF 211
DV+ N L+ K GD+ A V M P +C ++NA I+GY E + L LF
Sbjct: 223 DVV--NALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELF 276
Query: 212 STMANNGIRPNRVTHNILVHALCKKGLLGD----------AVK--FLGEV---------- 249
TM + P+ +T ++ A C LLGD VK F +V
Sbjct: 277 FTMRELSVDPDLMTITSVISA-C--ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333
Query: 250 ----LADDDGKATS-----DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD-IVAY 299
+ K S D ++ T ++ Y KNG +AL + M Q N+ D I
Sbjct: 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393
Query: 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK 359
+VL CL GD+ ++G + V+ N L+ K +D+A + + +
Sbjct: 394 SVLSACACL-GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452
Query: 360 TGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSN 419
V IS+ +II GL ++ +A F ML ++ P + R G L
Sbjct: 453 KDV----ISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMC 507
Query: 420 AFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDA---FSLKKEMLLDGIFPDVFTYNL 476
I +L G+ + F NAL+ R G + A F+ ++ DV ++N+
Sbjct: 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK--------DVVSWNI 559
Query: 477 LIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNM-KEAEEVFAKIQ 533
L+ G +A++L++ M+ G+ PD +T+ L+ C+R M + E F ++
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRSGMVTQGLEYFHSME 616
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 4e-17
Identities = 57/235 (24%), Positives = 110/235 (46%), Gaps = 8/235 (3%)
Query: 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK 359
N +++ F G++ A+ F +M +R D+ ++N L+ K G DEA Y +
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 360 TGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSN 419
GV PD ++ +++ D+ + RE ++ + + N +I Y +CGD+ +
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 420 AFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIG 479
A + D M + ++NA+I G + L M + PD+ T +I
Sbjct: 241 ARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 480 ASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534
A LG L +++ +++ G D+ LI+ + + G+ EAE+VF++++T
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 74.7 bits (185), Expect = 4e-17
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 295 DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK 343
D+V YN LI+G+C G + A F +M KRG P+V TY+ L++ LCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 5e-17
Identities = 79/357 (22%), Positives = 141/357 (39%), Gaps = 54/357 (15%)
Query: 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHN--ILVHALCKKGLLGDAVKFLG 247
TY+A + + + ++ + ++G P++ N +L+H C G+L DA +
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC--GMLIDARR--- 179
Query: 248 EVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307
L+++M ++N+ ++ +I G
Sbjct: 180 -----------------------------------LFDEMPERNL----ASWGTIIGGLV 200
Query: 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQI 367
G+ AFA F +M + G + T+ +L G + + KTGV D
Sbjct: 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260
Query: 368 SYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLM 427
+I GDI AR M EK+ V WN ++ GY G A + M
Sbjct: 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVA----WNSMLAGYALHGYSEEALCLYYEM 316
Query: 428 LSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHI 487
GVS + FTF+ +I +R + A ++ G D+ L+ G +
Sbjct: 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376
Query: 488 HLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPF 544
A ++D M R+ ++I++ LI G+ G +A E+F ++ G+A +H+ F
Sbjct: 377 EDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-16
Identities = 99/432 (22%), Positives = 170/432 (39%), Gaps = 55/432 (12%)
Query: 144 MIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE 203
+ G PD N ++ K G L A + EM P N A++ I G
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGN 204
Query: 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK--ATSDV 261
+A LF M +G T +++ A G G+ L K D
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA-----RAGQQLHCCVLKTGVVGDT 259
Query: 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQ 321
S L+D Y K GD A +++ M +K VA+N ++ G+ L+G A + +
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYE 315
Query: 322 MLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGD 381
M G D T++ ++ + L+ A + L +TG D ++ ++ G
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 382 IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNA 441
+ AR M K+++ WN +I GYG G + A + + M++ GV+ N TF A
Sbjct: 376 MEDARNVFDRMPRKNLIS----WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 442 LILA------ETRGGSIFDAFS------------------LKKEMLLDGIF--------- 468
++ A +G IF + S L +E LLD +
Sbjct: 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491
Query: 469 PDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDII-TYTELIKGHCARGNMKEAEE 527
P V + L+ A ++ L +++ G+ P+ + Y L+ + + G EA +
Sbjct: 492 PTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAK 549
Query: 528 VFAKIQTLGLAI 539
V ++ GL++
Sbjct: 550 VVETLKRKGLSM 561
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 4e-16
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 469 PDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 517
PDV TYN LI C G + AL+L++EM +RGI P++ TY+ LI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 5e-16
Identities = 66/260 (25%), Positives = 112/260 (43%), Gaps = 10/260 (3%)
Query: 310 GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISY 369
+ AF F ++++ P + T+N L++ +D A ++ + G+ D Y
Sbjct: 420 RAVKEAFR-FAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLY 475
Query: 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429
T+I G + E M+ V H + +IDG R G ++ AF +M S
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 430 FGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDG--IFPDVFTYNLLIGASCNLGHI 487
V + FNALI A + G++ AF + EM + I PD T L+ A N G +
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 488 HLALQLYDEMLRRGI--TPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFR 545
A ++Y + I TP++ YT + +G+ A ++ ++ G+ D + F
Sbjct: 596 DRAKEVYQMIHEYNIKGTPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653
Query: 546 ILKKRYRRMKESDKARDIHQ 565
L + DKA +I Q
Sbjct: 654 ALVDVAGHAGDLDKAFEILQ 673
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 6e-16
Identities = 57/268 (21%), Positives = 110/268 (41%), Gaps = 7/268 (2%)
Query: 144 MIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREM-SEMRP-SPNCATYNAFITGYCRV 201
M K PD + N L++ + G +++A V+ EM +E P P+ T A +
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV 261
++D+A ++ + I+ + I V++ +KG A+ ++ D
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---VKPDE 649
Query: 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN-GDISSAFAYFC 320
+ + L+D GD +A + D ++ I+ V+Y+ L+ G C N + A +
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GACSNAKNWKKALELYE 708
Query: 321 QMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380
+ P V T N L+ LC+ +L +A + + G+ P+ I+Y ++
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 381 DIVKAREFLLSMLEKSVVPEPHIWNVII 408
D + L E + P + I
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 3e-15
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235
P+ TYN I GYC+ ++++AL LF+ M GI+PN T++IL+ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 4e-15
Identities = 64/275 (23%), Positives = 123/275 (44%), Gaps = 12/275 (4%)
Query: 299 YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358
+N+L++ + DI A + + G D Y TL++ K GK+D + +
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 359 KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLS 418
GV + ++ +I G G + KA M K+V P+ ++N +I G+ G +
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 419 NAFSIRDLMLSFG--VSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGI--FPDVFTY 474
AF + M + + + T AL+ A G + A + + + I P+V+T
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 475 NLLIGASCNL-GHIHLALQLYDEMLRRGITPDIITYTELIK--GHCARGNMKEAEEVFAK 531
+ SC+ G AL +YD+M ++G+ PD + ++ L+ GH G++ +A E+
Sbjct: 620 AV---NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA--GDLDKAFEILQD 674
Query: 532 IQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQK 566
+ G+ + + + L K KA ++++
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 4e-15
Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 22/285 (7%)
Query: 129 CLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC 188
CLG + + L +KG + V+ N L+ K ++KA V + P +
Sbjct: 401 CLG-DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI----PEKDV 455
Query: 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGE 248
++ + I G N +AL F M ++PN VT + A + G L +
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 249 VLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT-DIVAYNVLINGFC 307
VL G D L+D Y + G A WN Q N D+V++N+L+ G+
Sbjct: 515 VLRTGIG---FDGFLPNALLDLYVRCGRMNYA---WN---QFNSHEKDVVSWNILLTGYV 565
Query: 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL--DEASHFYGVLSKTGVAPD 365
+G S A F +M++ G PD +T+ +LL C C + + +F+ + K + P+
Sbjct: 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSRSGMVTQGLEYFHSMEEKYSITPN 624
Query: 366 QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG 410
Y ++ L G + +A F+ M + P+P +W +++
Sbjct: 625 LKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-14
Identities = 99/438 (22%), Positives = 169/438 (38%), Gaps = 70/438 (15%)
Query: 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPD------------------------------ 152
+ +R LC G++ AL L M + D
Sbjct: 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS 115
Query: 153 -----VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKA 207
V N +++ + G+L A +V +M E + ++N + GY + D+A
Sbjct: 116 HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEA 171
Query: 208 LHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLG-EVLA-------DDDGKATS 259
L L+ M G+RP+ T ++ C G + D + G EV A + D
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRT-C--GGIPDLAR--GREVHAHVVRFGFELD----V 222
Query: 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYF 319
DV+ + I M Y K GD A +++ M + D +++N +I+G+ NG+ F
Sbjct: 223 DVVNALITM--YVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELF 276
Query: 320 CQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH 379
M + PD++T ++++ G +G + KTG A D ++IQ
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTF 439
G +A + M K V W +I GY + G A LM VS + T
Sbjct: 337 GSWGEAEKVFSRMETKDAVS----WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 440 NALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLR 499
+++ A G + L + G+ V N LI I AL+++ +
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452
Query: 500 RGITPDIITYTELIKGHC 517
+ D+I++T +I G
Sbjct: 453 K----DVISWTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 3e-13
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 329 PDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377
PDV+TYNTL++ CK+GK++EA + + K G+ P+ +Y +I GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 1e-11
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307
DV+T L+D Y K G +AL L+N+M ++ I+ ++ Y++LI+G C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 9e-11
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 141 RRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200
R++ I+ GTV ++ L+ + +KA + ++ ++ P +T NA IT C
Sbjct: 676 RKQGIKLGTVS----YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLAD 252
N+L KAL + S M G+ PN +T++IL+ A +K + L + D
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200
PDV+T+N L++ CK G +E+A + EM + PN TY+ I G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-09
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483
+V T+N LI + G + +A L EM GI P+V+TY++LI C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 47/278 (16%)
Query: 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGK-LDEASHFYGVLS 358
N + C +G + A M + D Y L LC+ + ++E S
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113
Query: 359 KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLS 418
+ + ++ G++V A M E+ + WNV++ GY + G
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGYAKAGYFD 169
Query: 419 NAFSIRDLMLSFGVSSNVFTF-----------------------------------NALI 443
A + ML GV +V+TF NALI
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229
Query: 444 LAETRGGSIFDAFSLKKEMLLDGI-FPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502
+ G + A ++ D + D ++N +I G L+L+ M +
Sbjct: 230 TMYVKCGDVVSA-----RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 503 TPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540
PD++T T +I G+ + E+ + G A+D
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 3e-08
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 325 RGFLPDVITYNTLLNCLCKQGKLDEA 350
+G PDV+TYNTL++ LC+ G++DEA
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEA 26
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 3e-08
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 217 NGIRPNRVTHNILVHALCKKGLLGDAVKFLGE 248
G++P+ VT+N L+ LC+ G + +AV+ L E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 404 WNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443
+N +IDGY + G + A + + M G+ NV+T++ LI
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 33/264 (12%)
Query: 102 KTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVN 161
+ + + ++ T E + + G AL + M +KG PD + + LV+
Sbjct: 603 QMIHEYN-IKGTPEV----YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRP 221
GDL+KA ++++ + +Y++ + KAL L+ + + +RP
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281
T N L+ ALC+ L A++ L E+ + IT +IL+ + + D L
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEM---KRLGLCPNTITYSILLVASERKDDADVGL 774
Query: 282 ALWNDMFQKNIQTDIVAYNVLINGFCL-----------------NGDI-------SSAFA 317
L + + I+ ++V + G CL +G S A
Sbjct: 775 DLLSQAKEDGIKPNLVMCRCIT-GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833
Query: 318 YFCQMLKRGFLPDVITYNTLLNCL 341
+ + + G LP + + +L CL
Sbjct: 834 VYRETISAGTLPTMEVLSQVLGCL 857
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 27/190 (14%)
Query: 45 DDDNLPCTLNDIMSYVGDQCRSKTRHWFSNKDSDNEGNPQAVFNALDLIL---------K 95
D + C L D+ S GD R F +G P+ A + +L +
Sbjct: 257 GDTFVSCALIDMYSKCGDI--EDARCVF-------DGMPEKTTVAWNSMLAGYALHGYSE 307
Query: 96 ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLT 155
E L MRD+G + D +IR + A +I+ G D++
Sbjct: 308 EALCLYYEMRDSG-----VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMA 215
+ LV+ K G +E A +V + P N ++NA I GY KA+ +F M
Sbjct: 363 NTALVDLYSKWGRMEDARNVF----DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 216 NNGIRPNRVT 225
G+ PN VT
Sbjct: 419 AEGVAPNHVT 428
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-07
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 297 VAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV 331
V YN LI+G C G + A F +M +RG PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 9e-07
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 504 PDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 547
PD++TY LI G+C +G ++EA ++F +++ G+ + + IL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 500 RGITPDIITYTELIKGHCARGNMKEAEEVF 529
+G+ PD++TY LI G C G + EA E+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 4e-06
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 465 DGIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497
G+ PDV TYN LI C G + A++L DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI 506
TYN LI C G + AL+L+ EM RGI PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 185 SPNCATYNAFITGYCRVNELDKALHLFSTM 214
P+ TYN I G CR +D+A+ L M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 7e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 290 KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQM 322
K ++ D+V YN LI+G C G + A +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 8e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPN 222
TYN I G C+ +++AL LF M GI P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-06
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 471 VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITP 504
+ TYN L+ A G LAL + +EM G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 9e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 297 VAYNVLINGFCLNGDISSAFAYFCQMLKRGF 327
V YN LI+G+C G + A F +M ++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413
PD ++Y T+I G C G + +A + M ++ + P + ++++IDG +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 332 ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD 365
+TYNTL++ LCK G+++EA + + + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRP 221
TYNA + + + D AL + M +G++P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502
TYN LI C G + AL+L+ EM +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 190 TYNAFITGYCRVNELDKALHLFSTMANNGI 219
TYN+ I+GYC+ +L++AL LF M G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 5e-04
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 296 IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLP 329
+ YN L+ GD A A +M G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGV 432
+N +I GY + G L A + M GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 8e-04
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 147 KGTVPDVLTHNYLVNELCKIGDLEKADHVIREMS 180
KG PDV+T+N L++ LC+ G +++A ++ EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 361 GVAPDQISYKTIIQGLCIHGDIVKAREFLLSM 392
G+ PD ++Y T+I GLC G + +A E L M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 7/148 (4%)
Query: 164 CKIGDLEKADHVIREMSEMRPSPNCA-----TYNAFITGYCRVNELDKALHLFSTMANNG 218
I ++ D + + R SPN T +A+I + DKAL+ G
Sbjct: 72 NNISSRDEVDQAEYYLYKFRHSPNAWYLRDSTIHAWIRQCLKYQAPDKALYTLRNRIQYG 131
Query: 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278
I P+ T N+L+ + KKG A + E++ + S I S ++ SY K D F
Sbjct: 132 IFPDDFTANLLLDSFLKKGNFKSAASVVTELMLQESFDNESTRILSLYVLYSYAKEFDPF 191
Query: 279 QALALWNDMFQKNIQTDIVAYNVLINGF 306
+ LA D+ + V+ L NG
Sbjct: 192 EDLAEQPDLDWVEERKFGVSL--LRNGL 217
|
Members of this family of small ribosomal proteins possess one of three conserved blocks of sequence found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins, leaving open the possibility that MRP-S27 might be a functional partner of GTP-binding ribosomal proteins. Length = 417 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 367 ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP 399
++Y T+I GLC G + +A E M E+ + P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 402 HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV 436
+N +IDG + G + A + M G+ +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 507 ITYTELIKGHCARGNMKEAEEVFAKIQTLGL 537
+TY LI G+C G ++EA E+F +++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.1 bits (89), Expect = 0.004
Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 6/171 (3%)
Query: 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMA 215
L L +G E+A ++ + + P P+ A + + + ++AL L+
Sbjct: 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157
Query: 216 NNGIRPNR--VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273
N L L G +A++ L + L + D L Y K
Sbjct: 158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD---DDAEALLNLGLLYLK 214
Query: 274 NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324
G +AL + + + YN L G A + L+
Sbjct: 215 LGKYEEALEYYEKALELDPDNAEALYN-LALLLLELGRYEEALEALEKALE 264
|
Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 572 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.46 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.45 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.39 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.34 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.16 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.15 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.14 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.14 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.11 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.03 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.01 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.0 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.97 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.88 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.86 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.84 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.78 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.73 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.73 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.61 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.6 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.58 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.53 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.51 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.47 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.27 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.22 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.14 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.01 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.95 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.89 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.87 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.86 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.84 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.82 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.79 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.76 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.7 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.65 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.63 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.62 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.62 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.61 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.59 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.59 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.59 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.59 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.57 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.57 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.56 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.56 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.55 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.54 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.49 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.49 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.47 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.46 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.4 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.37 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.35 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.33 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.31 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.31 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.3 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.29 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.28 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.27 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.26 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.25 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.24 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.24 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.22 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.04 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.03 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.99 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.92 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.9 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.89 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.89 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.86 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.84 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.78 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.7 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.66 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.61 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.57 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.36 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.3 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.28 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.12 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.06 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.93 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.92 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.91 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.88 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.79 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.75 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.75 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.72 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.67 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.64 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.63 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.62 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.61 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.6 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.51 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.37 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.36 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.27 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.24 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.23 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.21 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.13 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.08 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.07 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.02 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.97 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.93 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.76 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.73 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.71 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.6 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.6 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.59 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.3 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.3 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.3 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.22 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.2 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.04 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.86 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.7 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.65 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.6 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.56 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.55 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.52 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.45 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.41 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.32 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.23 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.17 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.14 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.97 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.81 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.5 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.2 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.18 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.06 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.87 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.87 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.81 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.67 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.46 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.9 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.63 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.51 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.44 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.2 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.2 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.17 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.09 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.72 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.63 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.46 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.22 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.01 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.5 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.43 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.31 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.25 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.2 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.08 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.61 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.24 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.89 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.86 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.45 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.1 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.02 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.33 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.11 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.08 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.99 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 83.87 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.33 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 83.2 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.04 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.69 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.68 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.62 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.21 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.79 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.78 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.47 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.28 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.76 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.46 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-68 Score=566.34 Aligned_cols=517 Identities=18% Similarity=0.238 Sum_probs=462.5
Q ss_pred CCCccchhhhhhhhccccchhhhhhhhcccccCCCCch-hHHHHHHHHHH--HhHHHHHHHHhcCCCCCCCCcCHHhHHH
Q 008249 47 DNLPCTLNDIMSYVGDQCRSKTRHWFSNKDSDNEGNPQ-AVFNALDLILK--ENLDRLKTMRDTGPVRCTLETDYRRHVA 123 (572)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (572)
++.|+.+..+.++........+...+.........++. .+++.+...+. +....+..+++.+. .||..+|+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHH
Confidence 44556666666665444444455555532222222233 44555555443 22444455555554 399999999
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE 203 (572)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (572)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALAL 283 (572)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 283 (572)
+++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...+. ...||..+|++++.+|++.|++++|.++
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~-gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH-PIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999987432 2339999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008249 284 WNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363 (572)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 363 (572)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443 (572)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 443 (572)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHC
Q 008249 444 LAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----L-------------------GHIHLALQLYDEMLRR 500 (572)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~ 500 (572)
.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..++|..+|++|++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999876432 1 1246799999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 501 GITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 501 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++.+. .++|..+|++|.+.+
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999998889999999999999999888899999999999998432 468999999998653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-66 Score=551.99 Aligned_cols=477 Identities=18% Similarity=0.249 Sum_probs=440.5
Q ss_pred hHHHHHHHHHH-HhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008249 85 AVFNALDLILK-ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNEL 163 (572)
Q Consensus 85 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 163 (572)
....++..+.+ +.+..+..+++.++.+.-++++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.++.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 34445555543 234444444544443222567888899999999999999999999999875 8999999999999
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHH
Q 008249 164 CKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243 (572)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 243 (572)
++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008249 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ--KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQ 321 (572)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 321 (572)
++|++|.+.+. . ||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.
T Consensus 528 ~lf~~M~~~Gv-~--PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 528 GAYGIMRSKNV-K--PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHcCC-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998876 6 9999999999999999999999999999986 57899999999999999999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 322 MLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEP 401 (572)
Q Consensus 322 m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 401 (572)
|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008249 402 HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGAS 481 (572)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 481 (572)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHcCCC
Q 008249 482 CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA----R-------------------GNMKEAEEVFAKIQTLGLA 538 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~ 538 (572)
++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999866432 1 2246799999999999999
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 539 IDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 539 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
||..||+.++.++++.+..+.+..++++|-
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 999999999988889999999999988773
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=528.25 Aligned_cols=453 Identities=20% Similarity=0.258 Sum_probs=426.9
Q ss_pred HHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHH
Q 008249 99 DRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIRE 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 178 (572)
+.+..++..+....++.||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 33334444333233578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC
Q 008249 179 MSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKAT 258 (572)
Q Consensus 179 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 258 (572)
|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.++++.|..+.+.+++..+.+.+. .
T Consensus 184 m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~-~-- 256 (697)
T PLN03081 184 MP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV-V-- 256 (697)
T ss_pred CC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC-C--
Confidence 94 5899999999999999999999999999999999999999999999999999999999999999999886 6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (572)
++..+|++|+++|++.|++++|.++|++|. .+|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 899999999999999999999999999997 5799999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008249 339 NCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLS 418 (572)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 418 (572)
.+|++.|++++|.+++..|.+.|+.||..+|+.++++|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.+
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999965 68899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 419 NAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLL-DGIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 419 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
+|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999986 599999999999999999999999999999876
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 498 LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 498 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
++.|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|..|++.|++.|++++|.+++++|.+.+
T Consensus 489 ---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 489 ---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred ---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999765 55 46789999999999999999999999997653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-64 Score=542.77 Aligned_cols=435 Identities=22% Similarity=0.278 Sum_probs=301.6
Q ss_pred CCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
|+.||..||+.++++++..+++..+.+++..|.+.|+.|+..+++.|+.+|++.|++++|.++|++|. .||..+||
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n 257 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWN 257 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhH
Confidence 56666666666666666666666666666666666666666666666666666666666666666662 35666666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
++|.+|++.|++++|+++|++|...|+.||..||+.++.++++.|+++.|.+++..+.+.|. . ||..+|++|+.+|+
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~--~d~~~~n~Li~~y~ 334 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF-A--VDVSVCNSLIQMYL 334 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-c--cchHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666554 4 56666666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 008249 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASH 352 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 352 (572)
+.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 335 k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 335 SLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred hcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 6666666666666664 355666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----
Q 008249 353 FYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLML---- 428 (572)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---- 428 (572)
+++.+.+.|+.|+..+|+.++++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~ 486 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Confidence 666666666666666666666666666666666666665543 244455555555555555555555555554
Q ss_pred ------------------------------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 429 ------------------------------SFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLI 478 (572)
Q Consensus 429 ------------------------------~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 478 (572)
+.|+.+|..++|.|+.+|++.|++++|.++|+++ .||..+|+.+|
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 4444444444455555566666666666666554 57888899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCChHHHHHHHHHHHhcCCH
Q 008249 479 GASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ-TLGLAIDHIPFRILKKRYRRMKES 557 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~ 557 (572)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999998 678999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008249 558 DKARDIHQKW 567 (572)
Q Consensus 558 ~~A~~~~~~~ 567 (572)
++|.+++++|
T Consensus 642 ~eA~~~~~~m 651 (857)
T PLN03077 642 TEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHC
Confidence 9999999988
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=538.54 Aligned_cols=466 Identities=19% Similarity=0.279 Sum_probs=427.4
Q ss_pred chhHHHHHHHHHH--HhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 008249 83 PQAVFNALDLILK--ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLV 160 (572)
Q Consensus 83 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 160 (572)
...++|.+..++. +..+.+..+++.++ +||+.+||++|.+|++.|++++|+++|++|...|+.||..+|+.++
T Consensus 120 ~~~~~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll 194 (857)
T PLN03077 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194 (857)
T ss_pred CchHHHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 3456777776652 33555566666654 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChh
Q 008249 161 NELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLG 240 (572)
Q Consensus 161 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 240 (572)
.+|++.++++.+.+++..|.+.|..|+..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECL 270 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999996 578999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 008249 241 DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFC 320 (572)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 320 (572)
+|.++|++|...+. . ||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 271 eAl~lf~~M~~~g~-~--Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 271 EGLELFFTMRELSV-D--PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred HHHHHHHHHHHcCC-C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999876 6 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008249 321 QMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPE 400 (572)
Q Consensus 321 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 400 (572)
+|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..|+
T Consensus 348 ~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~ 423 (857)
T PLN03077 348 RME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423 (857)
T ss_pred hCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc
Confidence 996 4789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGA 480 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 480 (572)
..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 99999999999999999999999999975 6888999999999999999999999999986 488888888777766
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008249 481 SCNLGHIHLALQLYDEMLRRGI------------------------------TPDIITYTELIKGHCARGNMKEAEEVFA 530 (572)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~g~------------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 530 (572)
|++.|+++.+.+++..+.+.|+ .||..+|+++|.+|++.|+.++|.++|+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 6555555555555555544443 5788899999999999999999999999
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 531 KIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 531 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
+|.+.|+.||..||+.++.+|++.|++++|.++|++|.+
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999984
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=504.75 Aligned_cols=440 Identities=18% Similarity=0.209 Sum_probs=422.1
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCC-CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKG-TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
..++..+|+.+|.+|.+.|++++|+++|+.|...+ ..|+..+|+.++.++++.++++.|.+++..|.+.|..||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999999864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.+. . |+..+|+.++.+++
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~--p~~~t~~~ll~a~~ 235 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS-D--AEPRTFVVMLRASA 235 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-C--CChhhHHHHHHHHh
Confidence 99999999999999999999996 47999999999999999999999999999998876 6 89999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 008249 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASH 352 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 352 (572)
+.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.+
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999964 589999999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008249 353 FYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV 432 (572)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 432 (572)
+|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|..|+..+|++|+++|++.|++++|.++|++|.+
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHH
Q 008249 433 SSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLR-RGITPDIITYTE 511 (572)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ 511 (572)
||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 799999999999999999999999999999999999999999999999999999999999999986 699999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 512 LIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 512 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
++.+|++.|++++|.+++++| +..|+..+|++|+.+|+..|+++.|..+++++++.+
T Consensus 468 li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 999999999999999998876 578999999999999999999999999999987643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-29 Score=278.99 Aligned_cols=438 Identities=13% Similarity=0.037 Sum_probs=357.6
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+++..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+..| .+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence 4566778888888888888888888888887653 44566677778888888888888888888877665 467778888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
...+.+.|++++|...++++...+ +.+...+..++..+.+.|++++|..+++.+....+ .+...|..++..+...
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP----DSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHc
Confidence 888888888888888888887654 34566777788888888888888888888887654 6778888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFY 354 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 354 (572)
|++++|...|+++.+.. +.+...+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888765 4567778888888888888888888888887752 345677888888888889999999988
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008249 355 GVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS 434 (572)
Q Consensus 355 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 434 (572)
+.+.... +.+...+..+...+...|++++|.+.++.+.+.+. +..++..++.++.+.|++++|...++.+.+..+ .
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-N 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence 8888764 45677788888888899999999999999888654 446677788889999999999999988887644 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
+...+..+...|...|++++|...|+++.+... ++...++.+...+...|+ .+|+..++++.+.. +.+..++..+..
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~ 845 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGW 845 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 778888888999999999999999999988643 467888889999999999 88999999988752 445677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 515 GHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.+...|++++|.++++++.+.+. .+..++..++.++.+.|+.++|.+++++|++
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999753 3888899999999999999999999999874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-28 Score=272.47 Aligned_cols=435 Identities=16% Similarity=0.085 Sum_probs=322.6
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
.+..++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|.+.|+++.+..+ .+...+..+...+.
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 510 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDI 510 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHH
Confidence 3444555555666666666666665543 244566677777777777777777777777776554 34556666777777
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHH
Q 008249 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (572)
..|++++|.+.|+++...+ +.+..++..+...+.+.|+.++|...++++...++ .+...+..++..|.+.|++++
T Consensus 511 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP----QEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cchhHHHHHHHHHHHCCCHHH
Confidence 7777777777777776653 33566677777777777777777777777777654 566677777777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008249 280 ALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (572)
Q Consensus 280 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 359 (572)
|.++++.+.+.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++.+.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888777654 5567777788888888888888888888777653 33556677777778888888888888887776
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008249 360 TGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTF 439 (572)
Q Consensus 360 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 439 (572)
.. +.+..++..+...+...|++++|.++++.+.+..+. +...+..+...+...|++++|...++.+...+ |+..++
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 53 345677778888888888888888888888776543 66677778888888888888888888887754 344667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008249 440 NALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR 519 (572)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 519 (572)
..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +++..++..++..+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 777888888888888888888888764 3367788888888888888999999888888764 66778888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 520 GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 520 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
|+ .+|...++++.+.. +.+...+..++..+...|++++|.++|+++++.+
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88 77888888888762 3355667788888899999999999999998765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-21 Score=212.20 Aligned_cols=186 Identities=16% Similarity=0.099 Sum_probs=101.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---------
Q 008249 374 QGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL--------- 444 (572)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~--------- 444 (572)
..+...|++++|++.+++..+..+. ++..+..+...|.+.|++++|...++++.+..+. +...+..+..
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHH
Confidence 3344567777777777777765544 4556666677777777777777777776653321 2222221111
Q ss_pred -----------------------------------HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 445 -----------------------------------AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489 (572)
Q Consensus 445 -----------------------------------~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (572)
.+...|+.++|.++++. ..++...+..+...+.+.|++++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 22233333333333320 11233344455556666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 490 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
|+..|++..+.. +.+...+..++..|...|++++|.+.++.+.+. .| +...+..+..++...|++++|.+++++++
T Consensus 622 A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 622 ARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 666666666542 334555666666666666666666666655543 23 23344455556666666666666666655
Q ss_pred h
Q 008249 569 L 569 (572)
Q Consensus 569 ~ 569 (572)
+
T Consensus 699 ~ 699 (1157)
T PRK11447 699 P 699 (1157)
T ss_pred h
Confidence 4
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-23 Score=193.35 Aligned_cols=428 Identities=18% Similarity=0.156 Sum_probs=345.7
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (572)
...-.+-..+.+..+++...+--...++. .+.-..+|..+.+.+-..|++++|+..++.+.+..| ..+..|..+..++
T Consensus 83 ~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al 160 (966)
T KOG4626|consen 83 ERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAAL 160 (966)
T ss_pred cceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHH
Confidence 33444455667777777666554444443 234567889999999999999999999999999876 4788999999999
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCH
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRVTH-NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK 277 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (572)
...|+.+.|.+.|.+.++. .|+.... +.+...+...|++++|...+.++++..+ .-..+|+.|...+-..|+.
T Consensus 161 ~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp----~fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP----CFAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred HhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC----ceeeeehhcchHHhhcchH
Confidence 9999999999999998874 5665543 3455566678999999999999998765 6678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHH
Q 008249 278 FQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHFYGV 356 (572)
Q Consensus 278 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (572)
..|+.-|++..+.+ +--...|-.|...|...+.+++|...|.+.... .|+ ...+..+...|...|..+.|...+++
T Consensus 235 ~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred HHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 99999999998774 334678889999999999999999999887764 444 56777788888999999999999999
Q ss_pred HHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008249 357 LSKTGVAPD-QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (572)
Q Consensus 357 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 435 (572)
.++. .|+ ...|+.+..++-..|++.+|.+.+.+.+...+. .....+.|...|...|.++.|..+|....+..+. -
T Consensus 312 al~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~ 387 (966)
T KOG4626|consen 312 ALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-F 387 (966)
T ss_pred HHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-h
Confidence 9885 444 578999999999999999999999999987654 6677888999999999999999999998875322 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 008249 436 VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELI 513 (572)
Q Consensus 436 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~ 513 (572)
....+.|...|-+.|++++|+..|++.++ +.|+ ...|+.+...|-..|+.+.|.+.+.+.+.. .|.. ..++.|.
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLa 463 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLA 463 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHH
Confidence 56788999999999999999999999887 6777 678999999999999999999999999874 4554 7889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 514 KGHCARGNMKEAEEVFAKIQTLGLAIDHI-PFRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..|-..|++.+|+.-+++..+. +||.. .|-.++.++.-..+|.+--+.++++
T Consensus 464 si~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 9999999999999999999886 67643 5666666665555555544444444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-21 Score=214.99 Aligned_cols=429 Identities=12% Similarity=0.021 Sum_probs=329.1
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC-HHHHH-----------
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN-CATYN----------- 192 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~----------- 192 (572)
...+...|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+..+... ...|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 456677899999999999988863 44778888899999999999999999999888665432 12221
Q ss_pred -HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 193 -AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 193 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
.....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++++..+ .+...+..+...|
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p----~~~~a~~~L~~l~ 429 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP----GNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHH
Confidence 22345678899999999999998763 33566777888899999999999999999998765 5666777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 008249 272 FKNGDKFQALALWNDMFQKNI--------QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK 343 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (572)
. .++.++|+..++.+..... ......+..+...+...|++++|++.|++..+.. +-+...+..+...|.+
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4 4678889888876543210 0012245566777888999999999999998763 2245667788889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhc
Q 008249 344 QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH---------IWNVIIDGYGRC 414 (572)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~ 414 (572)
.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999999988753 3355555555566778899999999998875433222221 123456778899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 415 GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLY 494 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 494 (572)
|+.++|..+++. .+.+...+..+...+.+.|++++|...|++..+.... +...+..++..+...|++++|++.+
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999998872 2346667788889999999999999999999986433 5788899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 495 DEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLA--I---DHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 495 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
+...+.. +.+..++..+..++...|++++|.++++++...... | +...+..+...+...|++++|.+.|++.+.
T Consensus 661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9887642 345667788899999999999999999999875321 2 224566778889999999999999999874
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-21 Score=186.28 Aligned_cols=381 Identities=18% Similarity=0.135 Sum_probs=262.7
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH-HHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCA-TYNAFI 195 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li 195 (572)
-..+|..+.+.+-..|++++|+.+++.+++.. +.....|..+..++...|+.+.|...|.+..+.+| +.. ....+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP--~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP--DLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc--chhhhhcchh
Confidence 44577777777777788888888777777763 33566777777777777777777777777777543 332 233344
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
..+-..|+.++|...|.+..+. .|. ...|+.|...+...|+...|++.|+++++.++ .-...|-.|...|...
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP----~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP----NFLDAYINLGNVYKEA 265 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC----cchHHHhhHHHHHHHH
Confidence 4444567777777777777654 333 34577777777777777778888877777665 4566777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
+.+++|+..+.+..... +-..+.+..+...|..+|..+-|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.
T Consensus 266 ~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred hcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHH
Confidence 77777777777776653 334566666777777777788888777777765 343 45677777777777888888777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008249 354 YGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVS 433 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 433 (572)
+.+.... .+......+.|...|...|.+++|..+|....+-.+. -....+.|...|-+.|++++|..-+++..+- .
T Consensus 343 YnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~ 418 (966)
T KOG4626|consen 343 YNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K 418 (966)
T ss_pred HHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence 7777765 2334566777777777777788887777777765333 2345677777777778888887777777763 3
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 008249 434 SN-VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI-ITYT 510 (572)
Q Consensus 434 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~ 510 (572)
|+ ...|+.+...|-..|+.+.|...+.+.+.. .|. ...++.|...|-..|++.+|+.-|++..+ ++||. ..|-
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~c 494 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYC 494 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhh
Confidence 43 456777777777777777777777777763 344 55667777777777888888777777776 35554 4455
Q ss_pred HHHHHHH
Q 008249 511 ELIKGHC 517 (572)
Q Consensus 511 ~l~~~~~ 517 (572)
.++.++-
T Consensus 495 Nllh~lq 501 (966)
T KOG4626|consen 495 NLLHCLQ 501 (966)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-20 Score=191.41 Aligned_cols=428 Identities=15% Similarity=0.044 Sum_probs=228.9
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
.+....+.+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+..| .+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4567788899999999999999998875 57888899999999999999999999999999776 46778999999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHH
Q 008249 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (572)
..|++++|+.-|......+-. +......++..+.. ..+.......+...+ .+...+..+.. |......+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~----~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKP----ENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCC----CCCCCHHHHHH-HHHHccCCc
Confidence 999999999988776554211 21111222221111 122333333333332 11111111111 111111111
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHH---HHhCCCHHHHHHHHHHHHHCC-CCC-CHhHHHHHHHHHHHcCCHHHHHHH
Q 008249 280 ALALWNDMFQKNIQTD-IVAYNVLING---FCLNGDISSAFAYFCQMLKRG-FLP-DVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 280 A~~~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
...-+....+. .+. ...+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11111111100 000 0001111000 012245556666666555443 122 233445555555556666666666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008249 354 YGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVS 433 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 433 (572)
++...... +.....|..+...+...|++++|...++++.+..+. ++..|..+...+...|++++|...|++..+..+.
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 66555532 112345555555555666666666666665554332 4455555555666666666666666665554322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-----
Q 008249 434 SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI-I----- 507 (572)
Q Consensus 434 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~----- 507 (572)
+...+..+...+.+.|++++|...+++..+.. ..+...|+.+...+...|++++|+..|++..+.. |+. .
T Consensus 432 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~ 507 (615)
T TIGR00990 432 -FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNV 507 (615)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccH
Confidence 34445555555556666666666666555432 1134555555566666666666666666655431 110 0
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 508 --TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 508 --~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.++..+..+...|++++|.+++++..+.. +.+...+..++..+.+.|++++|.+.|++.++
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11111112223456666666666655542 11233455556666666666666666665543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-21 Score=191.61 Aligned_cols=308 Identities=18% Similarity=0.124 Sum_probs=154.8
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.++.............+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344555555555555555542 123344555555555555555555555555543210000012344455555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 008249 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGV 356 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (572)
+++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 555555555554432 23444455555555555555555555555544322111100
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 357 LSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV 436 (572)
Q Consensus 357 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 436 (572)
....+..+...+.+.|++++|...++++.+.... +...+..+...+.+.|++++|..+++++.+.++....
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 0112233444445555555555555555543322 3344555555555566666666666555543322223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGH 516 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 516 (572)
.+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 44555566666666666666666666553 344444455666666666666666666666553 45655666555554
Q ss_pred Hh---cCCHHHHHHHHHHHHHcCCCCChH
Q 008249 517 CA---RGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 517 ~~---~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
.. .|+.+++..++++|.+.++.|++.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 43 345666666666666555554443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-21 Score=191.03 Aligned_cols=303 Identities=16% Similarity=0.103 Sum_probs=193.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HhHHHHHHHH
Q 008249 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN---RVTHNILVHA 232 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~ 232 (572)
.......+...|++++|...|+++.+.+| .+..++..+...+...|++++|..+++.+...+..++ ..++..+...
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 33345566788999999999999999876 4677899999999999999999999999987542222 2567888999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHh
Q 008249 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI----VAYNVLINGFCL 308 (572)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~ 308 (572)
|.+.|++++|..+|+++.+..+ .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGD----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999998654 77889999999999999999999999999876522211 234455566667
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 008249 309 NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREF 388 (572)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 388 (572)
.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|...
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766542 2233445555556666666666666666655432111123344444455555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 008249 389 LLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR---GGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~ 465 (572)
++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.
T Consensus 272 l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 55544432 22233344444444444444444444444332 2344444444433332 22444444444444443
Q ss_pred CCC
Q 008249 466 GIF 468 (572)
Q Consensus 466 ~~~ 468 (572)
++.
T Consensus 348 ~~~ 350 (389)
T PRK11788 348 QLK 350 (389)
T ss_pred HHh
Confidence 333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-19 Score=185.52 Aligned_cols=383 Identities=10% Similarity=-0.004 Sum_probs=265.9
Q ss_pred HHHhCCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 127 DLCLGGKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL 204 (572)
Q Consensus 127 ~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 204 (572)
.+.++.+++.-.-+|....+.- -..+..-...++..+.+.|++++|..+++......|.+ ...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCH
Confidence 3456667766666665544321 11233334556667778888888888888888877653 44555555666778888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALW 284 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 284 (572)
++|.+.|+++.... +.+...+..+...+...|++++|...+++++...+ .+...+..++..+...|++++|...+
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P----~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS----GNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 88888888887753 22556677777888888888888888888888665 67778888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008249 285 NDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP 364 (572)
Q Consensus 285 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 364 (572)
+.+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|...++.+.... +.
T Consensus 168 ~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~ 244 (656)
T PRK15174 168 RTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LD 244 (656)
T ss_pred HHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 8776653 2233333333 3467788888888888887765433344445555667778888888888888887753 34
Q ss_pred CHhhHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008249 365 DQISYKTIIQGLCIHGDIVK----AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFN 440 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 440 (572)
+...+..+...+...|++++ |...+++..+..+. +...+..+...+...|++++|...+++..+..+. +...+.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 56677778888888888775 78888888776544 6667778888888888888888888887775433 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008249 441 ALILAETRGGSIFDAFSLKKEMLLDGIFPDV-FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR 519 (572)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 519 (572)
.+..++.+.|++++|...++.+... .|+. ..+..+..++...|+.++|...|++..+. .|+.. .
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~ 387 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------P 387 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------h
Confidence 7777788888888888888887765 3443 33334556677788888888888887764 34432 2
Q ss_pred CCHHHHHHHHHHHHHc
Q 008249 520 GNMKEAEEVFAKIQTL 535 (572)
Q Consensus 520 g~~~~A~~~~~~m~~~ 535 (572)
..+++|...+.+..+.
T Consensus 388 ~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 388 QSFEEGLLALDGQISA 403 (656)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4455677777766664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-18 Score=180.60 Aligned_cols=358 Identities=10% Similarity=-0.012 Sum_probs=287.7
Q ss_pred HhHHHHHHHHhcCCCCCC-CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHH
Q 008249 96 ENLDRLKTMRDTGPVRCT-LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADH 174 (572)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 174 (572)
+.+..+..++...+.+.. -..+......++..+.+.|++++|..+++..+... +-+...+..++.+....|+++.|..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~ 97 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQ 97 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHH
Confidence 445556666655442211 11233345567788899999999999999998873 4456667777788888999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 175 VIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.++++.+..| .+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++.+....+
T Consensus 98 ~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 98 VVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 9999999877 467889999999999999999999999998753 33567788899999999999999999999988665
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHH
Q 008249 255 GKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITY 334 (572)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (572)
.+...+..+. .+...|++++|...++.+.+....++...+..+...+...|++++|+..++++.+.. +.+...+
T Consensus 176 ----~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 176 ----PRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred ----CCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 4444554443 478899999999999998876533445555666788999999999999999999864 3457778
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 335 NTLLNCLCKQGKLDE----ASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG 410 (572)
Q Consensus 335 ~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 410 (572)
..+...+...|++++ |...++...+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 889999999999986 899999998863 446788999999999999999999999999987655 66778889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 411 YGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 465 (572)
+.+.|++++|...++.+.+.++. +...+..+..++...|+.++|...|++..+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999876432 2334445567889999999999999999875
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-19 Score=188.54 Aligned_cols=416 Identities=10% Similarity=-0.000 Sum_probs=273.0
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
.+...-.-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|..++++..+..| .+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344445566777788899999999988887632 44555688888889999999999999999888765 4566777888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++++..+ .+...+..+...+...|
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P----~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP----QTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCC
Confidence 88888999999999999988762 33455 77788888889999999999999998776 67777777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh-----CCCH---HHHHHHHHHHHHC-CCCCCHh-HHH----
Q 008249 276 DKFQALALWNDMFQKNIQTDI------VAYNVLINGFCL-----NGDI---SSAFAYFCQMLKR-GFLPDVI-TYN---- 335 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~-----~g~~---~~a~~~~~~m~~~-g~~p~~~-~~~---- 335 (572)
..++|++.++.... .|+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 88889888876654 2221 111222222221 1223 5677777777654 2223221 111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 008249 336 TLLNCLCKQGKLDEASHFYGVLSKTGVA-PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP---EPHIWNVIIDGY 411 (572)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~ 411 (572)
..+..+...|++++|...|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1133455667778888888777766422 222 12224567777788888888877776543221 123455556667
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 412 GRCGDLSNAFSIRDLMLSFGV-----------SSN---VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLL 477 (572)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 477 (572)
...|++++|..+++.+.+..+ .|+ ...+..+...+...|++++|+++++++...... +...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 777888888877777766421 112 123445556666777777777777777665322 45666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 008249 478 IGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 547 (572)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 547 (572)
...+...|++++|++.+++..+.. |.+...+...+..+...|++++|..+++++.+. .|+......+
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 777777777777777777776642 333455566666677777777777777777765 4555443333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-18 Score=179.57 Aligned_cols=407 Identities=12% Similarity=0.044 Sum_probs=279.8
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH
Q 008249 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNIL 229 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 229 (572)
+.++....-.+......|+.++|++++.+.....+ .+...+..+...+...|++++|.++|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34555556667777788888888888888876333 455567888888888888888888888887652 3345666777
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 008249 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (572)
Q Consensus 230 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (572)
...+...|++++|...++++++..+ .+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAP----DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 7788888888888888888888665 5666 7788888888888888888888888775 44566666677777788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH------hHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhC-CCCCCHh-hHH---
Q 008249 310 GDISSAFAYFCQMLKRGFLPDV------ITYNTLLNCLC-----KQGKL---DEASHFYGVLSKT-GVAPDQI-SYK--- 370 (572)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~~--- 370 (572)
+..++|++.++.... .|+. .....++.... ..+++ ++|.+.++.+.+. ...|+.. .+.
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 888888888876553 1211 11222222221 22233 6677777777753 1122221 111
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHH
Q 008249 371 -TIIQGLCIHGDIVKAREFLLSMLEKSVV-PEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS---NVFTFNALILA 445 (572)
Q Consensus 371 -~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~ll~~ 445 (572)
..+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..+
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1133445668888888888888876532 222 22224667888888888888888876643221 13455666667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008249 446 ETRGGSIFDAFSLKKEMLLDGI-----------FPD---VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTE 511 (572)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 511 (572)
+...|++++|..+++.+..... .|+ ...+..+...+...|++++|+.+++++... .+.+...+..
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~ 398 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRID 398 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 7888888888888888876421 123 234556777778888888888888888775 3556677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 512 LIKGHCARGNMKEAEEVFAKIQTLGLAID-HIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 512 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
++..+...|++++|++.++++.+. .|+ ...+...+..+...|++++|..+++++++.+
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888888888888888888888876 454 4455566667788888888888888887654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-16 Score=166.49 Aligned_cols=433 Identities=12% Similarity=0.038 Sum_probs=320.4
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCCh--hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDV--LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.....+ ........+...+...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN-ISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHc
Confidence 3444788999999999999999873 443 234 888889999999999999999973222 2333444446688889
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 008249 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 281 (572)
|++++|+++|+++.+.... ++..+..++..+...++.++|++.++++....+ +...+..++..+...++..+|+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-----~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDP-----TVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-----chHHHHHHHHHHHhcchHHHHH
Confidence 9999999999999987433 567777888899999999999999999988663 4444555555555567776799
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHH------HHHHHHH---H--HcCC---H
Q 008249 282 ALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITY------NTLLNCL---C--KQGK---L 347 (572)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------~~ll~~~---~--~~g~---~ 347 (572)
+.++++.+.. +.+...+..+...+.+.|-...|.++..+-... +.+..... ...++.- . ...+ .
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999986 557788888999999999999988776652211 11111100 1111100 0 1122 2
Q ss_pred HHHHHHHHHHHhC-CCCCCH-hh----HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 348 DEASHFYGVLSKT-GVAPDQ-IS----YKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAF 421 (572)
Q Consensus 348 ~~A~~~~~~~~~~-~~~~~~-~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 421 (572)
+.|+.-++.+... +..|.. .. ..-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 3455555555442 111322 22 22344567789999999999999998886656668889999999999999999
Q ss_pred HHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCC-HHHHHHHHHHHH
Q 008249 422 SIRDLMLSFG-----VSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGI-------------FPD-VFTYNLLIGASC 482 (572)
Q Consensus 422 ~~~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~-~~~~~~li~~~~ 482 (572)
.+++.+.... .+++......|.-+|...+++++|..+++.+.+... .|| ...+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999986643 123444467889999999999999999999987421 123 223445677788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHH
Q 008249 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID-HIPFRILKKRYRRMKESDKAR 561 (572)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~ 561 (572)
..|++.+|++.++++.... |-|......+...+...|.+.+|++.++.+... .|+ ..+....+.++...|++++|.
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999998763 778899999999999999999999999877776 554 456678888899999999999
Q ss_pred HHHHHHHhcC
Q 008249 562 DIHQKWLLRN 571 (572)
Q Consensus 562 ~~~~~~l~~~ 571 (572)
.+.++.++..
T Consensus 505 ~~~~~l~~~~ 514 (822)
T PRK14574 505 LLTDDVISRS 514 (822)
T ss_pred HHHHHHHhhC
Confidence 9998886654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-16 Score=166.79 Aligned_cols=436 Identities=11% Similarity=-0.007 Sum_probs=309.4
Q ss_pred cCHHhHHHH-HHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHH-cCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 116 TDYRRHVAV-IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCK-IGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 116 ~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
|+..+.... .+.|.+.|++++|+.++.++.+.+ +.+......|..+|.. .++ +.+..+++. ..+.+...+..
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~a 252 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRIT 252 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHH
Confidence 344444444 888999999999999999999986 4455667777778887 466 777777553 23357788889
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHhHHHH------------------------------HHHHHHhCCChhHH
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIR-PNRVTHNI------------------------------LVHALCKKGLLGDA 242 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~------------------------------ll~~~~~~g~~~~a 242 (572)
+...|.+.|+.++|.++++++...-.. |...++.. ++..+.+.++++.+
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999987653211 33222221 13444555555544
Q ss_pred HHHHH-----------------------------HHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--C
Q 008249 243 VKFLG-----------------------------EVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK--N 291 (572)
Q Consensus 243 ~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 291 (572)
+++.. .+.+..+ .+.....-+.-...+.|+.++|.++|+..... +
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~----~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~ 408 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP----ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD 408 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc
Confidence 44421 1111111 23333333444456788889999999888762 1
Q ss_pred CCCCHHHHHHHHHHHHhCCC---HHHHHHH----------------------HHHHHHC-CC-CC--CHhHHHHHHHHHH
Q 008249 292 IQTDIVAYNVLINGFCLNGD---ISSAFAY----------------------FCQMLKR-GF-LP--DVITYNTLLNCLC 342 (572)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~---~~~a~~~----------------------~~~m~~~-g~-~p--~~~~~~~ll~~~~ 342 (572)
...+....+-++..|.+.+. ..++..+ +...... +. ++ +...|..+..++.
T Consensus 409 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 409 ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 23344455577777777765 3333333 1111111 11 23 5666777777776
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008249 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (572)
. ++.++|...+...... .|+......+...+...|++++|...++++... .|+...+..+..++.+.|+.++|..
T Consensus 489 ~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 489 D-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred h-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 6 7888899988777764 356554444555556899999999999998665 3344556677888899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008249 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 423 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
.++...+..+. +...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++..+..
T Consensus 564 ~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~- 639 (987)
T PRK09782 564 WLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE- 639 (987)
T ss_pred HHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 99999886532 3344444444555679999999999999985 5678889999999999999999999999999863
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 503 TPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 503 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
+.+...+..+..++...|+.++|++.+++..+.. +-+...+..+..++...|++++|...|++.++.+
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 5566788899999999999999999999999862 2356678899999999999999999999998765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-16 Score=168.06 Aligned_cols=425 Identities=13% Similarity=0.018 Sum_probs=261.9
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+..++..|...|.+.|++++|+..+++..+.. |+-..|..++..+ +++++|..+++++.+..|. +..++..+..
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~ 150 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCR 150 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHH
Confidence 45677788888888888888888888887763 4333333333222 7777888888888776663 3444444444
Q ss_pred H--------HHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 008249 197 G--------YCRVNELDKALHLFSTMANNGIRPNRVTHNIL-VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267 (572)
Q Consensus 197 ~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (572)
. |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++++.++.+.++ .+......|
T Consensus 151 ~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p----l~~~~~~~L 222 (987)
T PRK09782 151 SEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT----LSAAERRQW 222 (987)
T ss_pred HhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC----CCHHHHHHH
Confidence 3 4444 44444444 3322233344444444 6777777777777777777777665 444445555
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHhHH-----------
Q 008249 268 MDSYFK-NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFL-PDVITY----------- 334 (572)
Q Consensus 268 ~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~----------- 334 (572)
...|.. .++ +++..+++. .++.++..+..+...|.+.|+.++|.++++++...-.. |...++
T Consensus 223 ~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~ 297 (987)
T PRK09782 223 FDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP 297 (987)
T ss_pred HHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch
Confidence 555555 244 555555332 11245555666666666666666666666554321100 100000
Q ss_pred --------------------------------------------------------------------------------
Q 008249 335 -------------------------------------------------------------------------------- 334 (572)
Q Consensus 335 -------------------------------------------------------------------------------- 334 (572)
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 377 (987)
T PRK09782 298 VQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLT 377 (987)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHH
Confidence
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHhC-C-C------------------------------------------------
Q 008249 335 --NTLLNCLCKQGKLDEASHFYGVLSKT-G-V------------------------------------------------ 362 (572)
Q Consensus 335 --~~ll~~~~~~g~~~~A~~~~~~~~~~-~-~------------------------------------------------ 362 (572)
..+.-...+.|+.++|.++++..... + .
T Consensus 378 ~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (987)
T PRK09782 378 RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI 457 (987)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence 00001122345555555555444331 0 0
Q ss_pred --------------CC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 363 --------------AP--DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 363 --------------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|++
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11 23333444444443 55666777666666543 3433333344455678889999888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008249 427 MLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPD 505 (572)
Q Consensus 427 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 505 (572)
+... +|+...+..+..++.+.|+.++|...++...+.+ |+ ...+..+.....+.|++++|...+++..+. .|+
T Consensus 535 a~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~ 608 (987)
T PRK09782 535 ISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APS 608 (987)
T ss_pred Hhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC
Confidence 7654 3344455666777888899999999998888754 33 333333444445669999999999999874 577
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 506 IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 506 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
...|..+..++.+.|+.++|...+++..+. .| +...+..+...+...|+.++|++.+++.++.+
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888999999999999999999999999987 44 55677788889999999999999999988765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-17 Score=170.70 Aligned_cols=405 Identities=11% Similarity=-0.052 Sum_probs=278.6
Q ss_pred CCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
...|+...|..+...|.+.|++++|+..++..++.. +.+...+..+..+|...|++++|+.-|..+...+...+.. ..
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~ 232 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SA 232 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HH
Confidence 356778889999999999999999999999999874 4467789999999999999999999888776554322222 22
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH-
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY- 271 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 271 (572)
.++..+.. ..+........+.. +++...+..+...+ ..........-+.+...... .....+..+...+
T Consensus 233 ~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 302 (615)
T TIGR00990 233 QAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELDE----ETGNGQLQLGLKSP 302 (615)
T ss_pred HHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhhhccccccc----ccccchHHHHHHHH
Confidence 22222111 22223333333321 22222233232222 21112222222222211111 1111111111111
Q ss_pred --HhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCC
Q 008249 272 --FKNGDKFQALALWNDMFQKN--IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGK 346 (572)
Q Consensus 272 --~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 346 (572)
...+++++|.+.|++..+.+ .+.....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|+
T Consensus 303 e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 303 ESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGD 380 (615)
T ss_pred HhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCC
Confidence 23467889999999988764 2334567788888888899999999999988875 344 5577788888889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 347 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
+++|...++.+.+.. +.+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...++.
T Consensus 381 ~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~ 458 (615)
T TIGR00990 381 PDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRR 458 (615)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888763 346778888888999999999999999999887644 667778888889999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 427 MLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVF------TYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 427 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
..+..+ .+...++.+...+...|++++|.+.|++........+.. .++.....+...|++++|..++++..+.
T Consensus 459 al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 459 CKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 877532 357788888899999999999999999988753221111 1122222334468999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 501 GITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 501 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
. +.+...+..++..+...|++++|.+.|+++.+.
T Consensus 538 ~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 538 D-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3 334467888999999999999999999998875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-17 Score=164.14 Aligned_cols=445 Identities=13% Similarity=0.057 Sum_probs=345.8
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTV--PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
+.|+...+.|.+.|.-.|++..++.+...+...... .-...|-.+..+|-..|++++|...|.+.....+.-.+..+.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 346777899999999999999999999998876321 233468889999999999999999999988866543356677
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC----ChhHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG----LLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (572)
.+...+.+.|+.+.+...|+...... +-+..|...|...|...+ ..+.|..++.+.++..+ .|...|-.+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~----~d~~a~l~la 421 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP----VDSEAWLELA 421 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc----ccHHHHHHHH
Confidence 78899999999999999999998762 335667777777777664 56788888888888665 8899999988
Q ss_pred HHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCH------hHHH
Q 008249 269 DSYFKNGDKFQALALWNDMF----QKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR---GFLPDV------ITYN 335 (572)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~ 335 (572)
..+....-+.. +..|..+. ..+..+.+...|.+...+...|+++.|...|+..... ...+|. .+--
T Consensus 422 ql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 88766554444 77776654 4455688899999999999999999999999988765 122333 2333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 336 TLLNCLCKQGKLDEASHFYGVLSKTGVAPDQ-ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC 414 (572)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 414 (572)
.+...+-..++.+.|.+.|..+.+. .|.- ..|-.+...-...+...+|...+.+....+-. ++..++.+...+.+.
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhh
Confidence 4556666778999999999999885 3443 33444443333457888999999999876543 777888888899999
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008249 415 GDLSNAFSIRDLMLSF-GVSSNVFTFNALILAETR------------GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGAS 481 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 481 (572)
..+..|..-|+...+. ...+|.++.-.|.+.|.. .+..++|+++|.+.++..+. |...-|.+.-.+
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVL 656 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVL 656 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhh
Confidence 9999998877776553 223566666666665432 24578899999999887544 788888888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHH
Q 008249 482 CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL-GLAIDHIPFRILKKRYRRMKESDKA 560 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A 560 (572)
+..|++.+|..+|.+..+.. ..+..+|..+..+|..+|++..|+++|+...+. +..-++.+...|.+++.+.|.+.+|
T Consensus 657 A~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999864 346678999999999999999999999998775 3334677888999999999999999
Q ss_pred HHHHHHHHhc
Q 008249 561 RDIHQKWLLR 570 (572)
Q Consensus 561 ~~~~~~~l~~ 570 (572)
.+.....+..
T Consensus 736 k~~ll~a~~~ 745 (1018)
T KOG2002|consen 736 KEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHh
Confidence 9988877543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-15 Score=155.72 Aligned_cols=412 Identities=11% Similarity=-0.027 Sum_probs=309.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008249 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (572)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (572)
.++..+...|+.++|+..+++.... .+........+...+...|++++|+++++++.+..|. +...+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC
Confidence 8888888999999999999998832 1222333344466888899999999999999998874 5777788899999999
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 008249 203 ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALA 282 (572)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 282 (572)
+.++|++.++++... .|+...+..++..+...++..+|++.++++++..+ .+...+..+...+.+.|-...|++
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P----~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP----TSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999875 56666665555555556777679999999999876 788899999999999999999988
Q ss_pred HHHHHHhCCCCCCHHHH------HHHHHHH-----HhCCC---HHHHHHHHHHHHHC-CCCCCH-hHH----HHHHHHHH
Q 008249 283 LWNDMFQKNIQTDIVAY------NVLINGF-----CLNGD---ISSAFAYFCQMLKR-GFLPDV-ITY----NTLLNCLC 342 (572)
Q Consensus 283 ~~~~~~~~~~~~~~~~~------~~li~~~-----~~~g~---~~~a~~~~~~m~~~-g~~p~~-~~~----~~ll~~~~ 342 (572)
+..+-.+.- .+...-+ ..+++.- ....+ .+.|+.-++.+... +..|.. ..| .-.+-++.
T Consensus 225 l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 225 LAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 776543221 1111001 1111110 01122 34455666665542 222322 222 23455778
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCH
Q 008249 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV-----VPEPHIWNVIIDGYGRCGDL 417 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~ 417 (572)
..|++.++.+.++.+...+.+....+-..+.++|...+++++|..++..+..... .++......|.-+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 8999999999999999888665566888999999999999999999999976542 22344457889999999999
Q ss_pred HHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 418 SNAFSIRDLMLSFGV-------------SSNVF-TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483 (572)
Q Consensus 418 ~~A~~~~~~~~~~~~-------------~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 483 (572)
++|..+++.+.+..+ .||-. .+..++..+...|++.+|++.++++....+. |......+.+.+..
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~ 462 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 999999999987322 12322 3455667788999999999999999886443 78889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 008249 484 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 547 (572)
Q Consensus 484 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 547 (572)
.|.+.+|...++..... -+-+..+....+.++...|++++|..+.+.+.+. .|+......|
T Consensus 463 Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 463 RDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred cCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHH
Confidence 99999999999877765 2445677788899999999999999999999886 5665544443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-15 Score=134.35 Aligned_cols=411 Identities=15% Similarity=0.173 Sum_probs=296.2
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC--ChhHH-HHHHHHHhhCC----------
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG--DLEKA-DHVIREMSEMR---------- 183 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A-~~~~~~~~~~~---------- 183 (572)
.+++=|.|+. ...+|.+.++.-+|+.|.+.|++.++..-..|+...+-.+ ++.-| ++.|-.|...|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 4556777777 4566899999999999999998888887777666544322 22111 12222222211
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 184 ---------PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 184 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.+.+..+|..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|++...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhc
Confidence 12466789999999999999999999999998877888999999998765433 23788889988755
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHC----
Q 008249 255 GKATSDVITSTILMDSYFKNGDKFQ----ALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISS-AFAYFCQMLKR---- 325 (572)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~---- 325 (572)
. ||..|+|+++.+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..++.+++..
T Consensus 270 -~--Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 270 -T--PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred -C--CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 5 999999999999999998765 55678889999999999999999999999887754 55555555532
Q ss_pred CCCC----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008249 326 GFLP----DVITYNTLLNCLCKQGKLDEASHFYGVLSKTG----VAPD---QISYKTIIQGLCIHGDIVKAREFLLSMLE 394 (572)
Q Consensus 326 g~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 394 (572)
.++| |...|...+..|.+..+.+.|.++...+.... +.|+ ..-|..+....|+....+.-...++.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 44556777888889999999988877665431 2333 23466778888889999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH---H-----H-----HHHHH-
Q 008249 395 KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG-SI---F-----D-----AFSLK- 459 (572)
Q Consensus 395 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~---~-----~-----a~~~~- 459 (572)
.-..|+..+...++++..-.++++-.-++|..+...|...+...-..++..+++.. .. + . |..++
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999988876555555555555555443 11 0 0 11111
Q ss_pred ------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 460 ------KEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI----TPDIITYTELIKGHCARGNMKEAEEVF 529 (572)
Q Consensus 460 ------~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~l~~~~~~~g~~~~A~~~~ 529 (572)
.+|.+ ........+...-.+.+.|+.++|.+++.-+.+++- .|......-++..-.+.++...|..++
T Consensus 507 ~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 507 AYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 12222 233455667777778899999999999998865432 233333345566667778888999999
Q ss_pred HHHHHcCC
Q 008249 530 AKIQTLGL 537 (572)
Q Consensus 530 ~~m~~~g~ 537 (572)
+-|...+.
T Consensus 585 Q~a~~~n~ 592 (625)
T KOG4422|consen 585 QLASAFNL 592 (625)
T ss_pred HHHHHcCc
Confidence 98877643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-15 Score=150.73 Aligned_cols=441 Identities=16% Similarity=0.116 Sum_probs=327.2
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
..+|..+.++|-..|+++.|...|-...+..-..-+..+-.|.+.|.+.|+++.+...|+.+.+..| .+..+...+...
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~L 385 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhH
Confidence 3468889999999999999999998888763111234456688999999999999999999999776 466777777777
Q ss_pred HHhcC----CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHH----hCCCCCCCccHHHHHHHHH
Q 008249 198 YCRVN----ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVL----ADDDGKATSDVITSTILMD 269 (572)
Q Consensus 198 ~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~l~~ 269 (572)
|...+ ..+.|..++.+....- +.|...|..+...+-...-+ .++..+..+. ..+. . .-+...|.+..
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~-~--ip~E~LNNvas 460 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGK-Q--IPPEVLNNVAS 460 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCC-C--CCHHHHHhHHH
Confidence 77765 5577777777777653 44777888887776654444 4477766554 3333 3 56778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 008249 270 SYFKNGDKFQALALWNDMFQK---NIQTDI------VAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLN 339 (572)
Q Consensus 270 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 339 (572)
.+...|+++.|...|...... ...++. .+-..+...+-..++.+.|.+.|..+.+. -|. +..|..++.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 999999999999999988765 122232 23444666777788999999999999886 344 334444443
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh-----
Q 008249 340 CLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV-VPEPHIWNVIIDGYGR----- 413 (572)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~----- 413 (572)
.....+...+|...++...... ..++..++.+...+.+...+..|.+-|..+.+.-. .+|+.+.-.|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 3444577889999999888753 44666777777788899999999987777766532 2466666666665543
Q ss_pred -------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 414 -------CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH 486 (572)
Q Consensus 414 -------~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 486 (572)
.+..++|+++|.+..+..+. |...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+.++|..+|+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHH
Confidence 24578899999998887554 788888899999999999999999999998743 255678899999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH---------------
Q 008249 487 IHLALQLYDEMLRR-GITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKR--------------- 550 (572)
Q Consensus 487 ~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--------------- 550 (572)
+..|+++|+...+. +-..+..+...|.+++.+.|.+.+|.+.+..+......-..+.|+..+-.
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 99999999987754 44457788999999999999999999999988876322223344432221
Q ss_pred ---HHhcCCHHHHHHHHHHHHh
Q 008249 551 ---YRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 551 ---~~~~g~~~~A~~~~~~~l~ 569 (572)
....+..+.|.++|.++-+
T Consensus 776 eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 2233446667777777654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-14 Score=131.01 Aligned_cols=366 Identities=14% Similarity=0.147 Sum_probs=261.6
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
.+....+|.++|.++|+--+.+.|..++.+......+.+..+||.+|.+-.-... .+++.+|......||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 3556789999999999999999999999999888778899999999987654332 677889999889999999999
Q ss_pred HHHHHHhcCCHh----HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhH-HHHHHHHHHhC--C---CCCCCccHHH
Q 008249 194 FITGYCRVNELD----KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGD-AVKFLGEVLAD--D---DGKATSDVIT 263 (572)
Q Consensus 194 li~~~~~~g~~~----~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~--~---~~~~~~~~~~ 263 (572)
++++..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... | ....+.+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 999999999876 456788899999999999999999999998887754 44444444321 1 1133456777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 008249 264 STILMDSYFKNGDKFQALALWNDMFQKN----IQTD---IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNT 336 (572)
Q Consensus 264 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (572)
+..-++.+.+..+.+-|.++-.-+.... +.|+ ..-|..+....|+....+..+.+|+.|+-+-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 8888888889999988888776655431 2232 23455677778888899999999999998878889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C
Q 008249 337 LLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC-G 415 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 415 (572)
++++..-.|.++-.-+++.++...|....... -.+++..+......|+...-..+-.+..+. -
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 99998888999988888888887664322222 233444444444444322222222222111 1
Q ss_pred CHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 416 DLSN-AFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDG----IFPDVFTYNLLIGASCNLGHIHLA 490 (572)
Q Consensus 416 ~~~~-A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~A 490 (572)
++.+ ....-.++.+.. ......+.++..+.+.|..++|.+++..+.+.+ ..|......-+++.-.+.+.+..|
T Consensus 503 d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1222 222233444443 345567777778899999999999999886543 223344444666777788888899
Q ss_pred HHHHHHHHHCC
Q 008249 491 LQLYDEMLRRG 501 (572)
Q Consensus 491 ~~~~~~m~~~g 501 (572)
...++-|...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 99998887654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-12 Score=122.81 Aligned_cols=438 Identities=13% Similarity=0.026 Sum_probs=288.0
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHH----HhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--C
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKM----IQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSP--N 187 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~ 187 (572)
++.+..+|.+-...=-.+|+.+...++.++- ...|+..+...|..=...+-+.|..-.+..+.......|.+- -
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 3456666766655555667776666666553 344666677777666666666677766666666666655532 2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 008249 188 CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267 (572)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (572)
..+|+.-...|.+.+.++-|..+|...++. ++.+...|......--..|..+....+|++++..-+ .....|...
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p----kae~lwlM~ 590 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP----KAEILWLMY 590 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----cchhHHHHH
Confidence 346667777777777777777777777664 233455566555555566777777777777776433 566667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 008249 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL 347 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 347 (572)
...+-..|++..|..++....+.. +-+...|-.-+.....+..++.|..+|.+.... .|+...|..-+..---.+..
T Consensus 591 ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 777777777777777777777765 336667777777777777777777777766553 45566665555555556777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 348 DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLM 427 (572)
Q Consensus 348 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 427 (572)
++|.+++++..+. ++.-...|-.+.+.+-+.++++.|.+.|..-.+. ++-.+..|-.|...--+.|.+-+|..++++.
T Consensus 668 eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 7777777777764 3333456666666777777777777776665544 2335556666766667777777788787777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008249 428 LSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDII 507 (572)
Q Consensus 428 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 507 (572)
.-.++. +...|-..|..-.+.|..+.|..+..+..+. +.-+...|.--|....+.++-..+...+.+ ..-|..
T Consensus 746 rlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dph 818 (913)
T KOG0495|consen 746 RLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPH 818 (913)
T ss_pred HhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCch
Confidence 766554 6777777777777778888777777776654 333555666666665555553333333222 345666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 508 TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
....+...+....+++.|.+.|.+.++.+ +.+..+|.-+...+.+.|.-++-.+++.+...
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 66677777777788888888888888763 22345676677777788877777777776543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-12 Score=119.81 Aligned_cols=440 Identities=11% Similarity=0.070 Sum_probs=279.8
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|-....-=-.++++..|..+|++.+... .-+...|...+..=.+..++..|..++++....-|..| ..|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 44556555555556677778888888877754 34666677777777777788888888887777655433 34555555
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.--..|++..|.++|++-.+ ..|+...|.+.++.-.+-+.++.|..+++..+--. |++.+|-.....-.+.|.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-----P~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-----PKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-----ccHHHHHHHHHHHHhcCc
Confidence 55567888888888877765 47788888888888778888888888887776533 777777777777778888
Q ss_pred HHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHHcCCHHHHHH
Q 008249 277 KFQALALWNDMFQK-N-IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD--VITYNTLLNCLCKQGKLDEASH 352 (572)
Q Consensus 277 ~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~ 352 (572)
...|..+|+...+. | -..+...+.+...--..+..++.|.-+|+-..+. ++.+ ...|......=-+-|+......
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 88888888777654 1 0111222333333333455667777777666654 2222 2233333333233444332221
Q ss_pred --------HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHH--------HHHHHhcC
Q 008249 353 --------FYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEP-HIWNVI--------IDGYGRCG 415 (572)
Q Consensus 353 --------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l--------i~~~~~~g 415 (572)
-++.+.+. -+-|-.+|-..+......|+.+...+++++.+..-++... ..|... +-.-....
T Consensus 302 ~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22333333 2446667777777777778888888888887765322111 112111 11123456
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 416 DLSNAFSIRDLMLSFGVSSNVFTFNALILAE----TRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLAL 491 (572)
Q Consensus 416 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (572)
+.+.+.++++...+. ++....||..+--.| .++.++..|.+++...+ |..|-..+|...|..-.+.++++.+.
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 777788888777763 333455655554443 35567777777777665 45677777877888777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 492 QLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL-AIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 492 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
.++++.++.+ |-|..+|......-...|+.+.|..+|+-+..... ......|.+.|+-=...|.+++|+.+++++|+.
T Consensus 458 kLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 458 KLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 8888888764 45667777777777777888888888887776421 112335666666667788888888888888765
Q ss_pred C
Q 008249 571 N 571 (572)
Q Consensus 571 ~ 571 (572)
.
T Consensus 537 t 537 (677)
T KOG1915|consen 537 T 537 (677)
T ss_pred c
Confidence 4
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-12 Score=125.35 Aligned_cols=438 Identities=14% Similarity=0.048 Sum_probs=239.2
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+.++..|-..+ ...+.++|+.++.+..+- ++.+...| -+|.+..-++.|..++.+..+.-| .+...|.+-
T Consensus 377 P~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~ip-td~~IWita 446 (913)
T KOG0495|consen 377 PRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREIIP-TDREIWITA 446 (913)
T ss_pred CchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCC-CChhHHHHH
Confidence 34454554333 334555677777766654 22233333 344455566667777777666544 455666665
Q ss_pred HHHHHhcCCHhHHHHHHHHH----HHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008249 195 ITGYCRVNELDKALHLFSTM----ANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
...--.+|+.+...+++++- ...|+..+...|..=...|-..|.+-.+..+....+..|. .......+|+.-...
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv-Eeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV-EEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc-ccchhHhHHhhhHHH
Confidence 55555666666666665543 3455666666666666666666666666666666665554 222344566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 008249 271 YFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 350 (572)
+.+.+.++-|..+|....+-- +.+...|......--..|..++...+|.+.... ++-....|......+-..|++..|
T Consensus 526 ~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHH
Confidence 666666666666666655442 334444554444444455566666666665554 222333444444455555666666
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 430 (572)
..++....+.. +.+...|-..+........++.|..+|.+.... .|+...|..-+...--.++.++|.+++++..+.
T Consensus 604 r~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 66666555542 224455555555555556666666666655543 234444444444444455556666666555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008249 431 GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITY 509 (572)
Q Consensus 431 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 509 (572)
++.-...|..+.+.+-+.++++.|.+.|..-.+. -|+ ...|-.|.+.--+.|.+-.|..++++..-++ +-+...|
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lw 756 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLW 756 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhH
Confidence 1112334445555555555555555555433332 222 3344444444445555555555555555442 3444555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------CCCCChHHHHHHHHHHHhcCCHHHH
Q 008249 510 TELIKGHCARGNMKEAEEVFAKIQTL-----------------------------GLAIDHIPFRILKKRYRRMKESDKA 560 (572)
Q Consensus 510 ~~l~~~~~~~g~~~~A~~~~~~m~~~-----------------------------g~~p~~~~~~~l~~~~~~~g~~~~A 560 (572)
...|+.-.+.|+.+.|..+..++.+. ...-|+.....+...+....++++|
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444443321 0233555566777788888999999
Q ss_pred HHHHHHHHhcCC
Q 008249 561 RDIHQKWLLRNK 572 (572)
Q Consensus 561 ~~~~~~~l~~~~ 572 (572)
++.|++.++.++
T Consensus 837 r~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 837 REWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHccCC
Confidence 999999987663
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-12 Score=129.37 Aligned_cols=341 Identities=15% Similarity=0.153 Sum_probs=188.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.|.+...-...+.+.-.|++++|..++.+.++.. +.+...|..|...|-..|+.+++...+-......|+ |...|..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~l 213 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRL 213 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHH
Confidence 3334444444444445577777777777766653 445666777777777777777776666665555553 44666666
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHH----HHHHHH
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITS----TILMDS 270 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~l~~~ 270 (572)
.....+.|++++|.-.|.+.++.. +++...+-.-...|-+.|+...|..-|.++....+ . .+..-. -..++.
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~--~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-P--VDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-c--hhHHHHHHHHHHHHHH
Confidence 666666777777777777766653 23433444445556666777777777766666543 1 222222 223444
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC---------------------
Q 008249 271 YFKNGDKFQALALWNDMFQK-NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFL--------------------- 328 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------------------- 328 (572)
+...++-+.|.+.++..... +-..+...++.++..+.+...++.+......+......
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 55555556666666665542 11334455666666666666666666666555541111
Q ss_pred ------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008249 329 ------PDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG--VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPE 400 (572)
Q Consensus 329 ------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 400 (572)
++...+ .+.-++.+....+....+........ +.-+...|.-+..+|...|++.+|+.+|..+......-+
T Consensus 370 ~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 370 VGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 111110 11222333333333333444444433 222345566666666666666666666666665544445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEML 463 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 463 (572)
...|-.+..+|...|.++.|.+.|+......+. +...-..|...+-+.|+.++|.+.+..+.
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 556666666666666666666666666554321 33344445555666666666666666543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-14 Score=129.01 Aligned_cols=208 Identities=15% Similarity=0.152 Sum_probs=161.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 342 CKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAF 421 (572)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 421 (572)
...|++++|.+.+++.......-....|| +.-.+-..|+.++|++.|-++...- ..+..+...+.+.|....+...|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHH
Confidence 35688999999998888763222222333 2234567889999999988876432 226677778888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008249 422 SIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 422 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 501 (572)
+++.+.... ++.|....+.|...|-+.|+-.+|.+++-+-.+. +.-|..+...|...|....-+++|+..|++..-
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 998877664 4558889999999999999999998877655443 445788888999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 008249 502 ITPDIITYTELIKGH-CARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKE 556 (572)
Q Consensus 502 ~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 556 (572)
+.|+..-|..++..| .+.|++.+|.++++...+. ++-|.....-|++.+...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 689999998877654 5789999999999999886 56688888888888877773
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-14 Score=130.41 Aligned_cols=382 Identities=19% Similarity=0.164 Sum_probs=250.3
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCC------hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPD------VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
+.+.+.+.+|+++++..+.. .|+ ....+.+...+.+.|++++|+..|+...+.. ||..+-..|+-++...
T Consensus 247 ~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAI 322 (840)
T ss_pred eeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheec
Confidence 34444555555555554443 121 1233444455677888888888888887754 5665555555566677
Q ss_pred CCHhHHHHHHHHHHHCCCCC------------CHhHHHHHH-----HHHHhCCChhHHHHHHHHHHhC-CCC--------
Q 008249 202 NELDKALHLFSTMANNGIRP------------NRVTHNILV-----HALCKKGLLGDAVKFLGEVLAD-DDG-------- 255 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p------------~~~~~~~ll-----~~~~~~g~~~~a~~~~~~~~~~-~~~-------- 255 (572)
|+-++..+.|.+|......| +....+.-+ .-.-+.+ -..|++..-...+. .+.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g 401 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAG 401 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcc
Confidence 88888888888887543222 222222211 1111111 11122211111110 000
Q ss_pred ------------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---------------------
Q 008249 256 ------------KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL--------------------- 302 (572)
Q Consensus 256 ------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------- 302 (572)
..+.-...-..-..-|.++|+++.|+++++-..+.+-+.-...-+.|
T Consensus 402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 00011111122355678888888888888776554322111111111
Q ss_pred ---------------HHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHh
Q 008249 303 ---------------INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQI 367 (572)
Q Consensus 303 ---------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 367 (572)
.+....+|++++|.+.|++.....-.-....|| +.-.+-..|+.++|++.|-.+... +..+..
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~e 559 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAE 559 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence 111224578899999998887653221222233 223467789999999998877653 334778
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 368 SYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAET 447 (572)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 447 (572)
+...+...|-...+..+|++++.+.... ++.|+...+.|...|-+.|+-..|++.+-.--+. ++-+..+...|...|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 8888899999999999999999888765 4458899999999999999999999887665554 4458888889999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008249 448 RGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC-NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGN 521 (572)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 521 (572)
...-+++++.+|++..- +.|+..-|..++..|. +.|++++|.++|+...++ ++.|.....-|++.+...|-
T Consensus 638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999999998765 6899999998887765 689999999999999876 78889998889988877773
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-12 Score=128.63 Aligned_cols=394 Identities=16% Similarity=0.106 Sum_probs=252.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC
Q 008249 158 YLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG 237 (572)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 237 (572)
...+.+.-.|+.++|.+++.++.+..| .+...|..|...|-..|+.+++...+-...... +-|...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 333444445999999999999988877 577888899999999999998888776665543 336677888888888889
Q ss_pred ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhCCCHH
Q 008249 238 LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYN----VLINGFCLNGDIS 313 (572)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~ 313 (572)
.+++|.-.|.++++..+ ++...+---+..|-+.|+...|.+-|.++.....+.|..-.. ..++.+...++-+
T Consensus 222 ~i~qA~~cy~rAI~~~p----~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANP----SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cHHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999998776 677777777788888899999999998888774222222222 2345566666667
Q ss_pred HHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008249 314 SAFAYFCQMLKR-GFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSM 392 (572)
Q Consensus 314 ~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 392 (572)
.|.+.++..... +-..+...++.++..+.+...++.|......+......+|..-+-+-= .++ .-+.-.
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~~ 367 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNAL 367 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----cccccc
Confidence 777777776652 223345566777777788888888877776666544444443331100 000 000000
Q ss_pred Hh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008249 393 LE--KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG--VSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIF 468 (572)
Q Consensus 393 ~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (572)
.. .+..++... -.+.-++......+....+.....+.. +.-+...|.-+..+|...|++.+|++++..+......
T Consensus 368 ~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 368 CEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred ccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 00 112222222 122223334444444444444444444 3334566777777888888888888888877766444
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCCC
Q 008249 469 PDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ--------TLGLAID 540 (572)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--------~~g~~p~ 540 (572)
-+...|-.+..+|...|.+++|.+.|+..+... +.+...-.+|...+-+.|+.++|.+.++.+. ..+..|+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 456677777788888888888888888777642 3344555667777777888888888777743 2234444
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 541 HIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
..........+...|+.++-...-.+|++
T Consensus 526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 54455566667777777776655555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-11 Score=111.46 Aligned_cols=438 Identities=12% Similarity=0.072 Sum_probs=327.5
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh-hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV-LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
..+...|...+..=.++.++..|..++++.... -|-+ ..|...+..=-..|++..|.++|++..+ .+|+..+|++
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~s 179 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLS 179 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHH
Confidence 356678888999999999999999999998875 3444 3445555555667999999999999987 5689999999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
.|..-.+.+.++.|..+|++..- +.|+..+|.-....-.+.|++.-+..+|+.+++.-. ....+...+.+....-.+
T Consensus 180 fI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~-~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 180 FIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG-DDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 469999999999999999999999999998876432 111455677777777778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHH--------HHHHHHCCCCCCHhHHHHHHHHHHH
Q 008249 274 NGDKFQALALWNDMFQKNIQTD--IVAYNVLINGFCLNGDISSAFAY--------FCQMLKRGFLPDVITYNTLLNCLCK 343 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (572)
+..++.|.-+|+-..+.= +.+ ...|......--+-|+....... |+.+++. -+.|-.+|-..++.--.
T Consensus 257 qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHh
Confidence 889999999999888762 222 33444444433445554433332 2333333 24567777777888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHH--------HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--
Q 008249 344 QGKLDEASHFYGVLSKTGVAPDQ--ISYKTIIQGL--------CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY-- 411 (572)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~--------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-- 411 (572)
.|+.+...++|+..+.. ++|-. ..|...|-.. ....+++.+.++++..++. ++....|+..+--.|
T Consensus 335 ~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~ 412 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQ 412 (677)
T ss_pred cCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHH
Confidence 89999999999999886 45522 2232222211 2467899999999998884 444556665544444
Q ss_pred --HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 412 --GRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489 (572)
Q Consensus 412 --~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (572)
.+..++..|.+++..... .-|-..+|...|..-.+.++++.+..++++.++.++. |..+|......-...|+.+.
T Consensus 413 feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 413 FEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHH
Confidence 467889999999887664 5678889999999989999999999999999997654 78888888888888999999
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-----hcC--------
Q 008249 490 ALQLYDEMLRRG-ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYR-----RMK-------- 555 (572)
Q Consensus 490 A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-----~~g-------- 555 (572)
|..+|+-++... +......|.+.|..-...|.++.|..+++++++. .+...+|.+...--. ..|
T Consensus 490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~ 567 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEI 567 (677)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhc
Confidence 999999998742 2223466777888888899999999999999986 445556666554322 334
Q ss_pred ---CHHHHHHHHHHHH
Q 008249 556 ---ESDKARDIHQKWL 568 (572)
Q Consensus 556 ---~~~~A~~~~~~~l 568 (572)
....|+.+|+++.
T Consensus 568 ~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 568 TDENIKRARKIFERAN 583 (677)
T ss_pred chhHHHHHHHHHHHHH
Confidence 5667888888764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-13 Score=133.53 Aligned_cols=289 Identities=11% Similarity=-0.012 Sum_probs=174.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHHcCCHH
Q 008249 272 FKNGDKFQALALWNDMFQKNIQTD-IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV--ITYNTLLNCLCKQGKLD 348 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~ 348 (572)
...|+++.|.+.+.+..+.. |+ ...+-.....+...|+++.|.+.+.+..+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 34566666666666655542 33 2233334455666677777777776665542 332 22223355666677777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHH
Q 008249 349 EASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWN-VIIDGY---GRCGDLSNAFSIR 424 (572)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~g~~~~A~~~~ 424 (572)
.|...++.+.+.. +-+..++..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++...+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777766653 335556666667777777777777777777766543 222221 111111 2222222223344
Q ss_pred HHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 425 DLMLSFGV---SSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFT---YNLLIGASCNLGHIHLALQLYDEML 498 (572)
Q Consensus 425 ~~~~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~ 498 (572)
..+.+..+ +.+...+..+...+...|+.++|.+.+++..+.. ||... .....-.....++.+.+.+.+++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 33333221 1266777777778888888888888888887753 33221 1112222234577788888888877
Q ss_pred HCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 499 RRGITPDI--ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 499 ~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
+. .+-|. ....++.+.+.+.|++++|.+.|++.......|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 327 k~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred Hh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 23344 556688888888888888888888544444478888888888888888888888888888653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-13 Score=131.04 Aligned_cols=283 Identities=14% Similarity=0.031 Sum_probs=171.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHHcCCHHHH
Q 008249 274 NGDKFQALALWNDMFQKNIQTDIVA-YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYN--TLLNCLCKQGKLDEA 350 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A 350 (572)
.|+++.|.+.+....+.. +++.. |........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555544431 12222 222233335666666666666666553 33432222 224556666777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 008249 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH-------IWNVIIDGYGRCGDLSNAFSI 423 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~ 423 (572)
...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+....+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77776666653 3345666666666677777777777777766655442221 222223333333444555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008249 424 RDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGIT 503 (572)
Q Consensus 424 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (572)
++.+.+. .+.+......+...+...|+.++|.+.+++..+. .||... .++.+.+..++++++++..+...+. .+
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CC
Confidence 5554332 2236666777777778888888888888777764 334422 1233344557788888888877765 24
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 504 PDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 504 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
-|...+..+...+.+.|++++|.+.|+++.+. .|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566777788888888888888888888775 57777777788888888888888888877653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-12 Score=118.32 Aligned_cols=418 Identities=14% Similarity=0.057 Sum_probs=256.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD-VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
+-...+-+.++|++++|++.+...++. .|+ +.-|.....+|...|++++..+-..+.++..|. -+-.+..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 455667789999999999999999986 577 778888999999999999999988888886653 4556777778888
Q ss_pred hcCCHhHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCCccHHHHHHHHHHHHhcCCH
Q 008249 200 RVNELDKALHLFSTMANN-GIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLA-DDDGKATSDVITSTILMDSYFKNGDK 277 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (572)
..|++++|+.=..-.--. |+. |..+-..+=+.+-+ .|..-.++-.+ .++ ..-|+....++....+...-.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~-p~lPS~~fi~syf~sF~~~~~- 266 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRP-PVLPSATFIASYFGSFHADPK- 266 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCC-CCCCcHHHHHHHHhhcccccc-
Confidence 889988886443333211 221 22221111122211 22333333333 222 222444444444333321100
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--CC---CHHHHHHHHHHHHHC---CCCC---C------HhHHHHHHHH
Q 008249 278 FQALALWNDMFQKNIQTDIVAYNVLINGFCL--NG---DISSAFAYFCQMLKR---GFLP---D------VITYNTLLNC 340 (572)
Q Consensus 278 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g---~~~~a~~~~~~m~~~---g~~p---~------~~~~~~ll~~ 340 (572)
.....+.......+..++.. .+ .+..|...+.+-... .... | ..+.......
T Consensus 267 -----------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 267 -----------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred -----------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 00000011111111111110 11 222333222221110 0000 1 1111111222
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 341 LCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNA 420 (572)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 420 (572)
+.-.|+.-.|..-|+..++.... +...|-.+...|....+.++.++.|.+..+.++. ++.+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 33457777888888888876433 2333777777788888888888888888887766 677777777778888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 421 FSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 421 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
..-|++..+..+. +...|-.+.-+..+.+++++++..|++.++. .+--+..|+.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888888876443 5666777777777788888888888888875 3334677888888888888888888888888763
Q ss_pred CCCCC-------HHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 501 GITPD-------IIT--YTELIKGHCARGNMKEAEEVFAKIQTLGLAID-HIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 501 g~~p~-------~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.|+ ... .-.++-. .-.+++..|..++.++.+. .|. ...|..|...-.+.|+.++|+++|++...
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred --ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333 221 1222222 2347888888888888876 343 34678888888888888888888887643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-11 Score=111.28 Aligned_cols=366 Identities=14% Similarity=0.052 Sum_probs=239.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHH
Q 008249 185 SPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITS 264 (572)
Q Consensus 185 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 264 (572)
..|...+......+-+.|....|...|...... .+-.-..|..|... ..+.+. ........+.. .....-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~----~~~l~~~l~~~--~h~M~~ 230 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEI----LSILVVGLPSD--MHWMKK 230 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHH----HHHHHhcCccc--chHHHH
Confidence 344444444445555677778888877776643 12222333333222 222222 22222222100 111122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHH
Q 008249 265 TILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF--LPDVITYNTLLNCLC 342 (572)
Q Consensus 265 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~ 342 (572)
-.+..++-...+.++++.-.+.....|.+-+...-+....+.....++++|+.+|+++.+... --|..+|..++- .
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence 234455666667788888888888888766666556666666778889999999999887621 125667766653 3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008249 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (572)
+..+-.-+ ++-+-...--+--+.|...+.+.|.-.++.++|...|++.++.++. ....|+.+..-|....+...|.+
T Consensus 309 ~~~~skLs--~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSKLS--YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHHHH--HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 33222211 1111111001223457777888888888999999999999888766 66778888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008249 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 423 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
-++...+-.+. |-..|-.|.++|.-.+.+.=|+-+|++.....+ -|...|..|.++|.+.++.++|++.|.+....|
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 99998886543 888899999999999999999999998887532 268889999999999999999999999988765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 503 TPDIITYTELIKGHCARGNMKEAEEVFAKIQTL----GLAIDHI--PFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 503 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
..+...+..|...|-+.++.++|...+++.++. |...+.. ...-|..-+.+.+++++|..+..+.+
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 446678888999999999999998888877652 3222211 11224445566777777766554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-12 Score=127.99 Aligned_cols=282 Identities=11% Similarity=0.067 Sum_probs=133.2
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHhCCChhHHH
Q 008249 166 IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHN--ILVHALCKKGLLGDAV 243 (572)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~ 243 (572)
.|+++.|++.+....+....| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 467777766665544332211 122322234445667777777777777653 34433222 2245666677777777
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhCCCHHHHH
Q 008249 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV-------AYNVLINGFCLNGDISSAF 316 (572)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~ 316 (572)
+.++++.+..+ .+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...
T Consensus 174 ~~l~~~~~~~P----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 174 HGVDKLLEVAP----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHhcCC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 77777776655 566666667777777777777777777776654322111 1111222222222333333
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008249 317 AYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS 396 (572)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 396 (572)
++++.+.+. .+.+......+...+...|+.++|.++++...+. ++|.... ++.+....++.+++.+.++...+..
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 333333221 1223334444444444555555555544444442 2222111 1111222344444444444444433
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 397 VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEM 462 (572)
Q Consensus 397 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 462 (572)
+. |+..+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++-
T Consensus 325 P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 325 GD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 3334444444444444444444444444442 244444444444444444444444444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-12 Score=127.33 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=63.6
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhCCChhHHH
Q 008249 166 IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR--VTHNILVHALCKKGLLGDAV 243 (572)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~ 243 (572)
.|+++.|.+.+.+..+..+.| ...+-....+..+.|+++.|.+.+++..+.. |+. .........+...|+++.|.
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456666666665555543322 2223333445555566666666666655432 232 22222345555566666666
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
+.++.+.+..| .+..+...+...+...|++++|.+.+..+.+.+
T Consensus 174 ~~l~~l~~~~P----~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 174 HGVDKLLEMAP----RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHhCC----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 66666666554 445555566666666666666666666666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=141.55 Aligned_cols=261 Identities=20% Similarity=0.157 Sum_probs=103.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 008249 301 VLINGFCLNGDISSAFAYFCQMLKRGFLP-DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH 379 (572)
Q Consensus 301 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 379 (572)
.+...+.+.|++++|+++++.......+| |...|..+.......++++.|.+.++.+...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34566667777777777775544432123 3333444455556677778888888777765432 45556666665 577
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG-VSSNVFTFNALILAETRGGSIFDAFSL 458 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~ 458 (572)
+++++|.+++....+.. +++..+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888877766543 455667777778888888888888888876532 345667778888888888888888888
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008249 459 KKEMLLDGIFP-DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 537 (572)
Q Consensus 459 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 537 (572)
+++..+. .| |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 8888875 34 46677788888888888888888888877653 5566777888888888999999999999888762
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 538 AIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 538 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
+.|+.+...+.+++...|+.++|.++.++.++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 33677777888888899999999888887764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-15 Score=140.65 Aligned_cols=262 Identities=19% Similarity=0.131 Sum_probs=95.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCC-CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 123 AVIRDLCLGGKIGTALWLRRKMIQKG-TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
.+...+.+.|++++|++++++..... .+.++..|..+.......++++.|...++++...++. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45677778888888888886554443 2334444555556666677888888888888776553 55666666666 677
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 008249 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 281 (572)
+++++|.++++..-+. .+++..+..++..+...++++++.++++.+..... .+.+...|..+...+.+.|+.++|+
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA--APDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888887766543 34566667777777788888888888888765442 2267777777788888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008249 282 ALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (572)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 361 (572)
+.+++..+.. |.|....+.++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|..+++...+..
T Consensus 167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 8888877764 3356677777777777787777777777766553 3445556677777777777777877777776642
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 362 VAPDQISYKTIIQGLCIHGDIVKAREFLLSML 393 (572)
Q Consensus 362 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (572)
+.|..+...+.+++...|+.++|.++..+..
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 3466777777777777777777777766654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-11 Score=109.76 Aligned_cols=382 Identities=13% Similarity=0.051 Sum_probs=218.6
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH--H
Q 008249 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTH--N 227 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~ 227 (572)
..|+..+-.....+.+.|....|+..|......-| ..=.+|..|... ..+.+ ....... |.+.|.... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-~~W~AWleL~~l---it~~e----~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-WFWSAWLELSEL---ITDIE----ILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-cchHHHHHHHHh---hchHH----HHHHHHh-cCcccchHHHHH
Confidence 44555555555566667777777777777655433 122223222222 12222 2222221 112111111 1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 008249 228 ILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI--QTDIVAYNVLING 305 (572)
Q Consensus 228 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~ 305 (572)
-+..++....+.+++.+-.+.....|. . .+...-+....+.....++++|+.+|+++.+.+. --|..+|+.++-.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf-~--~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGF-P--NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-C--ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 233455555566667666666666654 1 2222333333444556677777777777776520 1244556555432
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 008249 306 FCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKA 385 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 385 (572)
++.+-. +..+-+-.-.--+--+.|...+.+.|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|
T Consensus 309 --~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 --KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred --HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 222111 1111111111011223455666677777777777777777777754 22456777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 386 REFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 465 (572)
++-++..++-++. |-..|-.|..+|.-.+...-|.-.|++.....+ -|...|.+|..+|.+.++.++|++.|......
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7777777776554 667777777777777777777777777776533 36777777778887778888888887777766
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008249 466 GIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLR----RGITPD--IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI 539 (572)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 539 (572)
|-. +...+..|.+.|-+.++.++|...|+..++ .|...+ .....-|..-+.+.+++++|.......... .+
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~ 538 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ET 538 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cc
Confidence 432 556777777777777777777777776654 232222 222233555666777777777766665543 34
Q ss_pred ChHHHHHHHHHHHh
Q 008249 540 DHIPFRILKKRYRR 553 (572)
Q Consensus 540 ~~~~~~~l~~~~~~ 553 (572)
...--..|++.+.+
T Consensus 539 e~eeak~LlReir~ 552 (559)
T KOG1155|consen 539 ECEEAKALLREIRK 552 (559)
T ss_pred hHHHHHHHHHHHHH
Confidence 44445556555544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-12 Score=112.90 Aligned_cols=302 Identities=13% Similarity=0.175 Sum_probs=205.8
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC---ChhhHHHH
Q 008249 83 PQAVFNALDLILKENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVP---DVLTHNYL 159 (572)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~l 159 (572)
|..++..++.++++.-+++.+.+..+.+ +-+.+..+.-+|.+-|.+.|..+.|+++...+.++.-.+ ...+...|
T Consensus 36 sr~Yv~GlNfLLs~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 36 SRDYVKGLNFLLSNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred cHHHHhHHHHHhhcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4556777777776655555544444321 112344566778888888899999999888888762111 11233456
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHh
Q 008249 160 VNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR----VTHNILVHALCK 235 (572)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~ 235 (572)
..-|...|-++.|+.+|..+.+.+. --..+...|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 6778888888999888888876543 34567788888888888899998888888876654432 235556666666
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 008249 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 315 (572)
..+++.|..++.+..+.++ ..+.+--.+.+.+...|+++.|.+.|+.+.+.+..--..+...|..+|.+.|+.++.
T Consensus 193 ~~~~d~A~~~l~kAlqa~~----~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 193 SSDVDRARELLKKALQADK----KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhhHHHHHHHHHHHHhhCc----cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 7888888888888888765 667777778888888888999988888888876555566777888888888888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH---cCCHHHHHHHHHHH
Q 008249 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI---HGDIVKAREFLLSM 392 (572)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 392 (572)
...+..+.+... ....-..+........-.+.|..++.+-.+. +|+...+..+++.... .|...+...++++|
T Consensus 269 ~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 269 LNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred HHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 888888877633 3333333333333334445555555444443 5788888888876654 33455556666666
Q ss_pred HhC
Q 008249 393 LEK 395 (572)
Q Consensus 393 ~~~ 395 (572)
...
T Consensus 345 vge 347 (389)
T COG2956 345 VGE 347 (389)
T ss_pred HHH
Confidence 543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.6e-12 Score=110.48 Aligned_cols=291 Identities=16% Similarity=0.133 Sum_probs=148.5
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHH
Q 008249 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 280 (572)
.++.++|.++|-+|.+.. +-+..+..+|.+.|.+.|.+|.|+++...+.++..........+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 455667777777776532 2233445556666777777777777777666643322112233445556666666666677
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHH
Q 008249 281 LALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV----ITYNTLLNCLCKQGKLDEASHFYGV 356 (572)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (572)
+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|..++..
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 76666666544 233445556666666666666666666666655433321 1233333344444555555555555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 357 LSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV 436 (572)
Q Consensus 357 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 436 (572)
..+.+ +..+..--.+.+.....|++..|.+.++.+.+.++..-+.+...|..+|...|+.++....+..+.+....++
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~- 283 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD- 283 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-
Confidence 55542 1123333344445555566666666666665555444444555555566666666665555555554322222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN---LGHIHLALQLYDEML 498 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~ 498 (572)
.-..+...-......+.|..++.+-... +|+...+..|++.... .|...+.+.+++.|+
T Consensus 284 -~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 284 -AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred -HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2222222222233334444433333322 3555555555554432 233444444444444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.8e-13 Score=127.84 Aligned_cols=285 Identities=13% Similarity=0.036 Sum_probs=188.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG--FLPDVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
+.++|+..|..+..+- .-.......+..+|...+++++|.++|+.+.+.. ..-+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 4567777777755442 2233455567777888888888888887776641 11245566665543322 112222
Q ss_pred H-HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008249 354 Y-GVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV 432 (572)
Q Consensus 354 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 432 (572)
+ +.+.+. -+-.+.+|.++.++|.-.++.+.|++.|++....+.. ...+|+.+..-+.....+|.|...|+......+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 223332 2345678888888888888888888888888776543 566777777777777888888888887766422
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008249 433 SSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTEL 512 (572)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 512 (572)
. +...|-.+...|.+.++++.|+-.|+++.+-+.. +.+....+...+-+.|+.++|+++++++.... +-|+..-...
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2 3345555667788888888888888887775433 56666677777778888888888888887653 3344444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 513 IKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
+..+...+++++|...++++.+. ++.+...+..++..|.+.|+.+.|..-|-=+.+.|
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 66677778888888888888875 23345567777888888888888887776665544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-11 Score=110.34 Aligned_cols=285 Identities=12% Similarity=0.060 Sum_probs=167.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 008249 274 NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
.|++..|++...+-.+.+ +.....|..-.++.-+.|+.+.+-.++.+..+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554 3334445555555556666666666666665543334444555555566666666666666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 354 YGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH-------IWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
.+++.+.+ +.+.........+|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66665553 2345556666666666666666666666666665543332 344455444444444444445554
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008249 427 MLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI 506 (572)
Q Consensus 427 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 506 (572)
..+. ...++..-.+++.-+...|+.++|.++.++..+.+..|+.. ..-.+.+-++...-++..+..... .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 4332 22244455566666667777777777777777666555511 122344556666655555555443 23444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 507 ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|..+.+++.+.|+.++|.+.+++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66667777777777777777777766654 5677777777777777777777777776654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-11 Score=109.07 Aligned_cols=292 Identities=16% Similarity=0.108 Sum_probs=131.4
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHH
Q 008249 166 IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKF 245 (572)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 245 (572)
.|++.+|+++..+-.+.+..| ...|..-+.+.-+.|+.+.+-.++.+..+..-.++...+.+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555554444432 2334444444445555555555555554432233334444444555555555555555
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 246 LGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
++++.+..+ ..+.+.....++|.+.|++.+...++.++.+.|.-.+...- +
T Consensus 176 v~~ll~~~p----r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~-------- 226 (400)
T COG3071 176 VDQLLEMTP----RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R-------- 226 (400)
T ss_pred HHHHHHhCc----CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H--------
Confidence 555555443 44445555555555555555555555555544432222100 0
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008249 326 GFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWN 405 (572)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 405 (572)
....+|..+++-....+..+.-...++...+. .+.++..-.+++.-+.+.|+.++|.++..+..+++..|. ..
T Consensus 227 ---le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~ 299 (400)
T COG3071 227 ---LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC 299 (400)
T ss_pred ---HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH
Confidence 00123334444333333333333333333322 233344444455555555555555555555555544433 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008249 406 VIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG 485 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 485 (572)
. .-.+.+-++.+.-.+..+...+..+ -+...+.+|...|.+.+.|.+|...|+...+ ..|+..+|+.+.+++.+.|
T Consensus 300 ~-~~~~l~~~d~~~l~k~~e~~l~~h~-~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 300 R-LIPRLRPGDPEPLIKAAEKWLKQHP-EDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLG 375 (400)
T ss_pred H-HHhhcCCCCchHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcC
Confidence 1 1122333444444444433333211 1224444455555555555555555554443 2344555555555555555
Q ss_pred CHHHHHHHHHHHH
Q 008249 486 HIHLALQLYDEML 498 (572)
Q Consensus 486 ~~~~A~~~~~~m~ 498 (572)
+..+|.+..++..
T Consensus 376 ~~~~A~~~r~e~L 388 (400)
T COG3071 376 EPEEAEQVRREAL 388 (400)
T ss_pred ChHHHHHHHHHHH
Confidence 5555555544443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-10 Score=106.71 Aligned_cols=264 Identities=14% Similarity=0.053 Sum_probs=124.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 008249 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH 379 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 379 (572)
..-..-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+-..+.+. .|..+.+|-++.-.|.-.
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 33334444455555555555555543 2333333334444555555555554444455443 233445555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLK 459 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (572)
|+.++|.+.|.+....+.. -...|-.+...|+-.|..++|...+....+.-.. ....+--+..-|.+.++.+.|.+.|
T Consensus 326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHH
Confidence 5555555555555443322 2234555555555555555555555444332100 1111112222344455555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 460 KEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR--GIT----PDIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 460 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
.+..... +-|+..++-+.-.....+.+.+|..+|+..... .+. --..+++.|..+|.+.+.+++|+..+++..
T Consensus 404 ~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 404 KQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 5554421 113444444444444455555555555554421 000 112334555555555555555555555555
Q ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 534 TLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 534 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.. .+.|..++.+++-.|...|+++.|.+.|.+.|-
T Consensus 483 ~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 483 LL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred Hc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 54 233445555555555555555555555555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.7e-12 Score=122.63 Aligned_cols=285 Identities=14% Similarity=0.022 Sum_probs=171.6
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhCCChhHHHHH
Q 008249 168 DLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG--IRPNRVTHNILVHALCKKGLLGDAVKF 245 (572)
Q Consensus 168 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 245 (572)
+..+|...|+.+.+.-. -+......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+-.+-+. -+---+
T Consensus 334 ~~~~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHHHH
Confidence 34566666666433222 233445556666667777777777777665542 111445555555433221 111122
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 246 LGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
-+++++..+ ..+.+|-++.++|.-+++.+.|++.|++..+.+ +....+|+.+.+-+.....+|.|...|+..+..
T Consensus 410 aq~Li~~~~----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 410 AQDLIDTDP----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHhhCC----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 233444343 566677777777777777777777777777654 335667777777777777777777777665543
Q ss_pred CCCCCHhHHH---HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008249 326 GFLPDVITYN---TLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH 402 (572)
Q Consensus 326 g~~p~~~~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (572)
|...|+ -+.-.|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.++|+++++++...+.+ |+.
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 333333 34556677777777777777776653 234555666666666777777777777777766555 444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008249 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIF 468 (572)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (572)
.--..+..+...+++++|...++++.+.- +-+...|..+...|.+.|+.+.|+.-|--+.+.+.+
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 44445556666777777777777776642 224456666667777777777777777666665433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-11 Score=122.63 Aligned_cols=428 Identities=15% Similarity=0.090 Sum_probs=272.8
Q ss_pred CCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
|+.||.+||..+|..||..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 88999999999999999999999998 9999998888889999999999999999988873 57889999
Q ss_pred HHHHHHHhcCCHhH---HHHHHHHHH----HCCCCCCHhHH--------------HHHHHHHHhCCChhHHHHHHHHHHh
Q 008249 193 AFITGYCRVNELDK---ALHLFSTMA----NNGIRPNRVTH--------------NILVHALCKKGLLGDAVKFLGEVLA 251 (572)
Q Consensus 193 ~li~~~~~~g~~~~---A~~~~~~m~----~~g~~p~~~~~--------------~~ll~~~~~~g~~~~a~~~~~~~~~ 251 (572)
.|..+|...|+... +.+.++... ..|+......+ ...+....-.|-++.+.+++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999998654 333222221 12221111111 1223333444556666666655543
Q ss_pred CCCCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 008249 252 DDDGKATSDVITSTILMDSYFKN-GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD 330 (572)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (572)
..... |... .++-.... ..+++-...-....+ .|++.+|..++..-.-+|+.+.|..++.+|.+.|++.+
T Consensus 168 sa~~~--p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 168 SAWNA--PFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred ccccc--hHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 33211 1111 12222222 223333333333332 58999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH------------------------HH
Q 008249 331 VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVK------------------------AR 386 (572)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------------------------A~ 386 (572)
..-|-.++-+ .++...+..++.-|...|+.|+..|+...+-.+.++|.... |.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 8878777755 88889999999999999999999998776665554332111 11
Q ss_pred HHHHHHH------------hCCCCCCHHHHHHHHHHHHhcCCHH--------------------------HHHHHHHHHH
Q 008249 387 EFLLSML------------EKSVVPEPHIWNVIIDGYGRCGDLS--------------------------NAFSIRDLML 428 (572)
Q Consensus 387 ~~~~~~~------------~~~~~~~~~~~~~li~~~~~~g~~~--------------------------~A~~~~~~~~ 428 (572)
+.++.-. -.|.......|...+...- .|.-+ .+.+.|.+..
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 1111000 0011111111211111100 01000 0111111110
Q ss_pred hC-----------------------------CCCCC----------------------------HHHHHHHHHHHHhcCC
Q 008249 429 SF-----------------------------GVSSN----------------------------VFTFNALILAETRGGS 451 (572)
Q Consensus 429 ~~-----------------------------~~~p~----------------------------~~~~~~ll~~~~~~g~ 451 (572)
.. ...|| ...-+.++..++..-+
T Consensus 395 ~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 395 RHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred hhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 00 00011 1122556666776666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 452 IFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR--GITPDIITYTELIKGHCARGNMKEAEEVF 529 (572)
Q Consensus 452 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 529 (572)
..++...-+..... .-| ..|..||+-++...+.+.|..+.++.... .+..|..-+..+.+.+.+.+....+..++
T Consensus 475 ~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 66666554444332 122 57889999999999999999999998753 34567778888999999999999999999
Q ss_pred HHHHHcC-CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 530 AKIQTLG-LAID-HIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 530 ~~m~~~g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
+++.+.- ..|+ ..++-.+.+.....|+.+...++++-+.
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 9998742 1222 3345567777778888888887776553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-08 Score=98.78 Aligned_cols=435 Identities=13% Similarity=0.102 Sum_probs=279.9
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhC-CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQK-GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
..|-..+..+.++|++..-+..|++.+.. .+......|...+......|-++.+..++++.++..| ..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP----EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHH
Confidence 46888888889999999999999998765 3444566788889989999999999999999987554 335677888
Q ss_pred HHhcCCHhHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhCCChh---HHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 008249 198 YCRVNELDKALHLFSTMANNG------IRPNRVTHNILVHALCKKGLLG---DAVKFLGEVLADDDGKATSDVITSTILM 268 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (572)
++..+++++|.+.+...+... .+.+-..|..+-+..++.-+.- ....+++.++.... . .-...|++|.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft-D--q~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT-D--QLGFLWCSLA 255 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc-H--HHHHHHHHHH
Confidence 999999999999999886432 2334455666666555544332 33445555554432 1 2356899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----------------C------CHHHHHHHHHHHHHCC
Q 008249 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN----------------G------DISSAFAYFCQMLKRG 326 (572)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~a~~~~~~m~~~g 326 (572)
+.|.+.|.++.|.++|++.... ...+.-|..+.++|..- | +++-.+..|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999998876 23333444444444321 1 1222334444443331
Q ss_pred C-----------CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHHcCCHHHHHHHH
Q 008249 327 F-----------LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD------QISYKTIIQGLCIHGDIVKAREFL 389 (572)
Q Consensus 327 ~-----------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~ 389 (572)
. +.++..|..-+. ...|+..+-...+.+..+. +.|. ...|..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 0 112222222221 3345666667777777664 3332 246788888999999999999999
Q ss_pred HHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------CHHHHHHHHHHHHhc
Q 008249 390 LSMLEKSVVPE---PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS-----------------NVFTFNALILAETRG 449 (572)
Q Consensus 390 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------------~~~~~~~ll~~~~~~ 449 (572)
++..+...+-- ..+|.....+-.+..+++.|.++.+......-.| +...|+..++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99987654422 2456666666778888999998887765431111 223455555656667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHH
Q 008249 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIKGHCA---RGNMKEA 525 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~---~g~~~~A 525 (572)
|-++....+|+++.+..+. ++.........+-...-++++.++|++-+..=-.|++ ..|+..+.-+.+ .-+.+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8888888899988877554 3332222333334455677888887765543123444 566666655543 2367888
Q ss_pred HHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 008249 526 EEVFAKIQTLGLAIDHIPFR--ILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 526 ~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..+|+++++ |.+|...-+. .....=.+-|....|..+++++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888888 5666443222 2222223457777788887775
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.6e-10 Score=105.89 Aligned_cols=454 Identities=13% Similarity=0.065 Sum_probs=294.2
Q ss_pred ccccCCCCchhHHHHHHHHH-HHhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHH----HhCC-
Q 008249 75 KDSDNEGNPQAVFNALDLIL-KENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKM----IQKG- 148 (572)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g- 148 (572)
+-.....+|..+|-....++ .+...++..+..... -...|..+.......+.+..+++.|..++... ....
T Consensus 41 kV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~---le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~y 117 (611)
T KOG1173|consen 41 KVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYK---LEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSY 117 (611)
T ss_pred HHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhh
Confidence 33344466776665554443 222333333333321 12456677777778888888999998888722 1110
Q ss_pred --------CCCChhh-----------HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008249 149 --------TVPDVLT-----------HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH 209 (572)
Q Consensus 149 --------~~~~~~~-----------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (572)
..+|..- +-.-...|....++++|...+.+.....+ .+-..+..++.... -.+.+
T Consensus 118 y~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~-~c~Ea~~~lvs~~m-----lt~~E 191 (611)
T KOG1173|consen 118 YEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA-KCFEAFEKLVSAHM-----LTAQE 191 (611)
T ss_pred cchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-hhHHHHHHHHHHHh-----cchhH
Confidence 0011110 00011234445567777777777654333 12223333333322 22333
Q ss_pred HHHHHHHCCC----CCCHhHHHHHHHHH-HhCCChhHHHHHHH-HHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 210 LFSTMANNGI----RPNRVTHNILVHAL-CKKGLLGDAVKFLG-EVLADDDGKATSDVITSTILMDSYFKNGDKFQALAL 283 (572)
Q Consensus 210 ~~~~m~~~g~----~p~~~~~~~ll~~~-~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 283 (572)
.++.+..... .-+......+.... ++..+. .....-+ +-+. ....+......-.+-+...+++.+..++
T Consensus 192 e~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~----~l~~~~dll~~~ad~~y~~c~f~~c~ki 266 (611)
T KOG1173|consen 192 EFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLI----GLAENLDLLAEKADRLYYGCRFKECLKI 266 (611)
T ss_pred HHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhh----hhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence 3333332111 11222222222211 111110 0000000 0000 1115666777778888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008249 284 WNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363 (572)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 363 (572)
++...+.. ++....+..-|.++...|+..+-+.+=.++++. .+....+|-++.-.|.-.|+.++|.+.|......+
T Consensus 267 t~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-- 342 (611)
T KOG1173|consen 267 TEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-- 342 (611)
T ss_pred hHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC--
Confidence 99999876 777778888888999999999888888888876 44567889888888888999999999999887643
Q ss_pred CC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 364 PD-QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442 (572)
Q Consensus 364 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 442 (572)
|. ...|-.+...|.-.|..++|+..+...-+.-.. ...-+-.+.--|.+.++.+.|.+.|.......+ -|+...+-+
T Consensus 343 ~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~El 420 (611)
T KOG1173|consen 343 PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHEL 420 (611)
T ss_pred ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-Ccchhhhhh
Confidence 32 467888999999999999999998887663211 111133345567889999999999998877533 377788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008249 443 ILAETRGGSIFDAFSLKKEMLLD--GIF----PDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGH 516 (572)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 516 (572)
.-.....+.+.+|..+|+..... .+. --..+++.|..+|.+.+++++|+..+++.... .+-+..++.++.-.|
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIY 499 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHH
Confidence 77777889999999999987732 111 13456889999999999999999999999986 477889999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008249 517 CARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 517 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
...|+++.|.+.|.+.... .||..+...++..+
T Consensus 500 ~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 9999999999999999875 78776655555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-08 Score=97.52 Aligned_cols=449 Identities=16% Similarity=0.089 Sum_probs=292.1
Q ss_pred HHhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHH
Q 008249 95 KENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADH 174 (572)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 174 (572)
+.++..+..+...++ -.+++ .....-.+...|+-++|....+...+.. .-+.+.|..+.-.+....++++|++
T Consensus 24 kkgLK~~~~iL~k~~----eHges--lAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 24 KKGLKLIKQILKKFP----EHGES--LAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HhHHHHHHHHHHhCC----ccchh--HHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 344555566666543 22333 2333334566689999999888877754 3466778888888888899999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 175 VIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.++.....++ .|...|.-+.-.-++.|+++..........+.. +-....|..+..+..-.|+...|..++++..+...
T Consensus 97 cy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999998876 578888888777888899988888888887752 22455677888888889999999999999887653
Q ss_pred CCCCccHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 008249 255 GKATSDVITSTILM------DSYFKNGDKFQALALWNDMFQKNIQTDIVAY-NVLINGFCLNGDISSAFAYFCQMLKRGF 327 (572)
Q Consensus 255 ~~~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~ 327 (572)
.. ++...+.... ....+.|..++|++.+...... ..|...+ .+-...+.+.++.++|..++..++..
T Consensus 175 ~~--~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-- 248 (700)
T KOG1156|consen 175 TS--PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-- 248 (700)
T ss_pred cC--CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--
Confidence 22 5554444332 3446678888888877766543 2233333 34456778899999999999999987
Q ss_pred CCCHhHHHHHHH-HHHHcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008249 328 LPDVITYNTLLN-CLCKQGKLDEAS-HFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWN 405 (572)
Q Consensus 328 ~p~~~~~~~ll~-~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 405 (572)
.||...|...+. ++.+..+..++. .+|....+. .+.....-..=+.......-.+..-+++..+.+.|+++ ++.
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~ 324 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFK 324 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhh
Confidence 567666655544 443444444444 666665543 21111111111111111223444556777777887664 344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----CC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008249 406 VIIDGYGRCGDLSNAFSIRDLMLS----FG----------VSSNVFT--FNALILAETRGGSIFDAFSLKKEMLLDGIFP 469 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~----~~----------~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 469 (572)
.+...|-.-...+-..++...+.. .| -+|.... +-.++..+-+.|+++.|..+++..+.+ .|
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 444444332222211111111111 11 1345444 445678889999999999999999886 56
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH------
Q 008249 470 D-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI------ 542 (572)
Q Consensus 470 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------ 542 (572)
+ ...|..=.+.+...|++++|..++++.++.+ .||...=.--+.-..++++.++|.++.....+.|. +..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~m 479 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEM 479 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHh
Confidence 6 4456666788999999999999999999864 45554444555666789999999999999988764 221
Q ss_pred --HHHH--HHHHHHhcCCHHHHHHHHHHH
Q 008249 543 --PFRI--LKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 543 --~~~~--l~~~~~~~g~~~~A~~~~~~~ 567 (572)
.|-. =+.+|.+.|++..|.+=|..+
T Consensus 480 qcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 480 QCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 1222 245688888888887665544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.3e-10 Score=104.02 Aligned_cols=191 Identities=10% Similarity=0.055 Sum_probs=151.3
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 377 CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAF 456 (572)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 456 (572)
.-.|+...|.+-|+..++....++. .|-.+..+|....+.++....|.+..+.++. |..+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 3468889999999999987665333 3878888999999999999999999987654 6677777777777889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008249 457 SLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 457 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
.-|++.+..... +...|--+.-+..+.+++++++..|++..++ +|-.+..|+.....+..+++++.|.+.|+.+.+..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999999985322 4666777777777899999999999999876 67778999999999999999999999999998762
Q ss_pred CC-----CChHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 537 LA-----IDHIP--FRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 537 ~~-----p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
.. .+... -..++-.-. .+++..|.+++++.++.|+
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDP 534 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCc
Confidence 11 12222 222222222 3889999999999988764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-08 Score=98.42 Aligned_cols=430 Identities=16% Similarity=0.081 Sum_probs=291.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
|..++. +...+++...+++.+.++. +.+....+.....-.+...|+-++|....+.-...++ .+.+.|..+.-.+-.
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhh
Confidence 444444 4566889999999999888 4555667777777778888999999998888887666 467889888888888
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHH
Q 008249 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 280 (572)
..++++|++.|......+ +-|...+.-+.-.=.+.|+++.....-...++..+ .....|..++.++.-.|+...|
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~----~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP----SQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998864 33666777776666778888888888888888665 6778899999999999999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHH------HHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 008249 281 LALWNDMFQKN-IQTDIVAYNVLI------NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 281 ~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
..++++..+.. -.|+...|.... ....+.|..++|++.+..-... +.-....-.+-...+.+.+++++|..+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 99999988764 346666664432 2345678888888887665443 221223334556678899999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHH-HHHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 354 YGVLSKTGVAPDQISYKTII-QGLCIHGDIVKAR-EFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG 431 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 431 (572)
+..++.. .||..-|...+ .++.+..+.-++. .+|....+.-...... -..=++......-.+....++..+.+.|
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-RRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999986 36665555444 4444444444454 5555554432211111 1111111111222344445667777788
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 008249 432 VSSNVFTFNALILAETRGGSIFDAFSLKKEML----LDG----------IFPDVFT--YNLLIGASCNLGHIHLALQLYD 495 (572)
Q Consensus 432 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~----~~~----------~~p~~~~--~~~li~~~~~~g~~~~A~~~~~ 495 (572)
+++- +..+...|-.-...+-..++.-.+. ..| -.|.... +-.++..+-+.|+++.|...++
T Consensus 319 ~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 7653 3333333322111111111111111 111 1345444 4456777889999999999999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 496 EMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 496 ~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
..+.+ .|+. ..|..-.+.+...|++++|..++++..+.. .+|...=..-++-..++++.++|.++..+.-
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 99976 5665 567777889999999999999999999874 5566655566777788899999988876653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.2e-08 Score=88.65 Aligned_cols=290 Identities=13% Similarity=0.008 Sum_probs=195.3
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHHcCCHHHH
Q 008249 273 KNGDKFQALALWNDMFQK-NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVI-TYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A 350 (572)
-.++...|...+-.+... -++-|+.....+...+...|+.++|...|++..-. .|+.. ......-.+.+.|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 344444444444433332 23556677777888888888888888888876653 33221 122222334677777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 430 (572)
..+...+.... +-....|-.-...+...+++..|+.+-++.+..+.. +...|-.-...+...|+.++|.-.|+.....
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 77777666542 223344444445555677888888888887776544 5556666667777888888888888887764
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH-H
Q 008249 431 GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLI-GASC-NLGHIHLALQLYDEMLRRGITPDI-I 507 (572)
Q Consensus 431 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~-~ 507 (572)
.+ -+...|..|++.|...|.+.+|...-+...+. +..+..+.+.+. ..|. .-..-++|.++++...+. .|+- .
T Consensus 364 ap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~ 439 (564)
T KOG1174|consen 364 AP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP 439 (564)
T ss_pred ch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence 32 36788888888888888888888777666553 233555555442 2232 223357788888877663 5554 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 508 TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
..+.+...+...|+.+.++.++++.... .||....+.|++.+...+.+++|.+.|...+..|+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 6677788888888888888888888875 67888888888888888888899888888887664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-10 Score=106.16 Aligned_cols=201 Identities=20% Similarity=0.170 Sum_probs=132.8
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..+ .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 34566777777777888888888887776653 33456667777777777888888777777777655 34556666777
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIR-PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
.+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++.+...+ .+...+..+...+...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP----QRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CChHHHHHHHHHHHHcC
Confidence 777777777777777777654211 1234455566666777777777777777776554 44556666667777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
++++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus 184 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777777666552 34455555566666666666666666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-10 Score=104.98 Aligned_cols=201 Identities=15% Similarity=0.081 Sum_probs=134.8
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 366 QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILA 445 (572)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 445 (572)
...+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 345555666666666777777766666654322 4555666666777777777777777766664332 44566666667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 446 ETRGGSIFDAFSLKKEMLLDGIFP-DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
+...|++++|.+.+++.......| ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776542222 24455666777778888888888888877652 3345677777788888888888
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 525 AEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 525 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
|.+.++++.+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888887776 2335555666777777788888888887776554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-10 Score=117.20 Aligned_cols=266 Identities=14% Similarity=0.058 Sum_probs=166.1
Q ss_pred CCHHHHHHHHHHHHh-----cCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH---------hCCChhHHHHHHHHHH
Q 008249 186 PNCATYNAFITGYCR-----VNELDKALHLFSTMANNGIRPN-RVTHNILVHALC---------KKGLLGDAVKFLGEVL 250 (572)
Q Consensus 186 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~ 250 (572)
.+...|...+.+... .+..++|.++|++..+. .|+ ...|..+..++. ..+++++|...+++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455555555555322 13356788888877764 343 444555544433 2234678888888888
Q ss_pred hCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 008249 251 ADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD 330 (572)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (572)
+.++ .+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +
T Consensus 332 ~ldP----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~ 405 (553)
T PRK12370 332 ELDH----NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-R 405 (553)
T ss_pred hcCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 8766 677778888888888888888888888888775 455667777778888888888888888887776322 2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 331 VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG 410 (572)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 410 (572)
...+..++..+...|++++|...++++.....+.+...+..+...+...|+.++|...+.++...... +....+.+...
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~ 484 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAE 484 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHH
Confidence 22233344456667788888888887766432224445666777777888888888888776554322 33445555566
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 411 YGRCGDLSNAFSIRDLMLSF-GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 465 (572)
|...| ++|...++.+.+. ...+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 66666 3666666665442 111222222 23334445666665555 666654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-09 Score=104.56 Aligned_cols=436 Identities=14% Similarity=0.014 Sum_probs=261.5
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
++-|...|..|.-++...|+++.+.+.|++.... ..-....|+.+...|...|.-..|..+++.-....+.|+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4467788888888899999999999999887764 234667788888888888888899888888777664454333323
Q ss_pred HH-HHHH-hcCCHhHHHHHHHHHHHC--CC--CCCHhHHHHHHHHHHhC-----------CChhHHHHHHHHHHhCCCCC
Q 008249 194 FI-TGYC-RVNELDKALHLFSTMANN--GI--RPNRVTHNILVHALCKK-----------GLLGDAVKFLGEVLADDDGK 256 (572)
Q Consensus 194 li-~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 256 (572)
++ ..|. +.+.+++++..-.+.... +. ...+..|..+.-+|... ....++.+.+++.++.++
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-- 475 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-- 475 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC--
Confidence 33 3333 346777777777666551 11 11233444444444321 123467788888888776
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 008249 257 ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNT 336 (572)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (572)
.|+.+...+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+. ..-|......
T Consensus 476 --~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~ 552 (799)
T KOG4162|consen 476 --TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDG 552 (799)
T ss_pred --CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchh
Confidence 3444444445567778889999999888888755778888888888888888999999888876654 1111111112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 008249 337 LLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK--SVVPEPHIWNVIIDGYGRC 414 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~ 414 (572)
-++.-...++.+++......+... +. +.... ...++-....+....+.-. ...-.+.++..+......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~-we-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~- 622 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLAL-WE-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS- 622 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHH-HH-hhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh-
Confidence 222223356666665555444331 00 00000 0011111111111111100 111112222222221111
Q ss_pred CCHHHHHHHHHHHHhCCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 415 GDLSNAFSIRDLMLSFGV--SSN------VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH 486 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~--~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 486 (572)
+...+..-.. +.+... .|+ ...|......+.+.+..++|...+.+..... ......|......+...|.
T Consensus 623 -~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 623 -QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred -hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHh
Confidence 1111000000 111111 122 2234455566777888888887777776642 2245566666677778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 487 IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEE--VFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIH 564 (572)
Q Consensus 487 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (572)
.++|.+.|......+ |.++....++..++.+.|+..-|.. ++..+.+.+ +.++..|..++..+.+.|+.+.|.+.|
T Consensus 700 ~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 700 LEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 888888888887642 3345677888888888887777777 888888874 347778888888888888888888888
Q ss_pred HHHHhc
Q 008249 565 QKWLLR 570 (572)
Q Consensus 565 ~~~l~~ 570 (572)
...++.
T Consensus 778 ~aa~qL 783 (799)
T KOG4162|consen 778 QAALQL 783 (799)
T ss_pred HHHHhh
Confidence 877654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-10 Score=117.09 Aligned_cols=269 Identities=13% Similarity=0.024 Sum_probs=185.6
Q ss_pred CCChhhHHHHHHHHHH-----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 008249 150 VPDVLTHNYLVNELCK-----IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR---------VNELDKALHLFSTMA 215 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 215 (572)
+.+...|...+.+... .+.+++|...|++..+..|. +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3455655555554322 13467899999999887763 55666666555442 245789999999998
Q ss_pred HCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008249 216 NNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD 295 (572)
Q Consensus 216 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 295 (572)
+.+ +-+...+..+...+...|++++|...|+++++.++ .+...+..+...+...|++++|+..+++..+.+ +.+
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P----~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~ 405 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP----ISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTR 405 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 764 23677788888888899999999999999999776 677888889999999999999999999998875 223
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 008249 296 IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQG 375 (572)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 375 (572)
...+..++..+...|++++|...+++..+...+-+...+..+...+...|+.++|...+..+... .+.+....+.+...
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~ 484 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAE 484 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHH
Confidence 33344445556678899999999988876532224455677778888999999999999887664 22234445556666
Q ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 376 LCIHGDIVKAREFLLSMLEKS-VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG 431 (572)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 431 (572)
|...| ++|...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 67666 47777777766532 11221222 44445566777777666 7776643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-07 Score=89.91 Aligned_cols=369 Identities=12% Similarity=0.080 Sum_probs=174.5
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC------CCCC-----
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR------PSPN----- 187 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~----- 187 (572)
.+|...+......|-++.++.++++.++. ++..-.-.|..+++.+++++|.+.+..+.... .+.+
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 35666677666667777777777777664 34445666677777777777766665553221 0111
Q ss_pred ---------------------------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 008249 188 ---------------------------------CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC 234 (572)
Q Consensus 188 ---------------------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 234 (572)
...|++|...|.+.|++++|..+|++..+. ..+..-|+.+.++|+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHH
Confidence 234556666666666666666666665543 223334444444443
Q ss_pred hCC----------------------ChhHHHHHHHHHHhCCCC--------CCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 235 KKG----------------------LLGDAVKFLGEVLADDDG--------KATSDVITSTILMDSYFKNGDKFQALALW 284 (572)
Q Consensus 235 ~~g----------------------~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 284 (572)
.-. +++-...-|+.+....+. +.+.++..|..-+. +..|+..+-...+
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHH
Confidence 211 111112222222221110 00022222222222 2234444555555
Q ss_pred HHHHhCCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHH
Q 008249 285 NDMFQKNIQT------DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD---VITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 285 ~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
.+..+.- .| -...|..+...|-..|+.+.|..+|++..+-..+-- ..+|..-...=.+..+++.|.++.+
T Consensus 371 teAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 371 TEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5554321 11 123445555666666666666666666554322110 1223333333334455555665555
Q ss_pred HHHhCCC-----------CC------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008249 356 VLSKTGV-----------AP------DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLS 418 (572)
Q Consensus 356 ~~~~~~~-----------~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 418 (572)
......- ++ +...|...++.--..|-++....+++++.+..+. ++.........+-.+.-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHH
Confidence 4432210 00 1223444444444555666666666666655443 2222222222233344556
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHH
Q 008249 419 NAFSIRDLMLSFGVSSNV-FTFNALILAETR---GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGA--SCNLGHIHLALQ 492 (572)
Q Consensus 419 ~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~ 492 (572)
++.+++++-...-..|++ ..|+..+.-+.+ ...++.|..+|++..+ |+.|...-+-.|+-+ --+.|-...|+.
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666655443333443 345555544433 2356777777777777 455543222222211 123455666666
Q ss_pred HHHHHH
Q 008249 493 LYDEML 498 (572)
Q Consensus 493 ~~~~m~ 498 (572)
++++..
T Consensus 608 iyerat 613 (835)
T KOG2047|consen 608 IYERAT 613 (835)
T ss_pred HHHHHH
Confidence 666654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-10 Score=103.30 Aligned_cols=230 Identities=13% Similarity=0.033 Sum_probs=165.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 008249 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH 379 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 379 (572)
+.+.++|.+.|.+.+|.+.|+...++ .|-+.||..|-+.|.+..++..|+.++.+-.+. ++-|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 55777888888888888888777765 456667777778888888888888888777664 333444444555666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLK 459 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (572)
++.++|.++++...+.... ++.....+...|.-.++++-|...++++.+.|+. +...|+.+.-+|...++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7788888888887776433 5566666667777778888888888888887775 6777777777777788888888877
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 460 KEMLLDGIFPD--VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 460 ~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
++....-..|+ ...|-.+.......|++.-|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++.+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77776533344 4456666666777788888888887777653 345577777777777888888888888777664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-08 Score=90.74 Aligned_cols=410 Identities=13% Similarity=0.070 Sum_probs=234.0
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE 203 (572)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (572)
+...+.+.|++++|...+..+.+.. .++...+-.|...+.-.|.+.+|..+-.+. + .+.-.-..++....+.|+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~-k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA----P-KTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC----C-CChHHHHHHHHHHHHhCc
Confidence 4455667788888888888777643 456666666777777778888886555543 2 233344445555566777
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHH-HHHHHHhcCCHHHHHH
Q 008249 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI-LMDSYFKNGDKFQALA 282 (572)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~ 282 (572)
-++-..+.+.+.+. ..--.+|.......-.+++|++++..++..++ +-...|. +.-+|.+..-++-+.+
T Consensus 137 Ek~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~-----ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 137 EKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP-----EYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred HHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh-----hhhhhHHHHHHHHHhcchhhhHHH
Confidence 66666666655432 12233444444445567788888888877653 3333333 3445667777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC-----CHHHHHHHHHHH
Q 008249 283 LWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG-----KLDEASHFYGVL 357 (572)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~A~~~~~~~ 357 (572)
++.-..+.- +.++...|.......+.=.-..|..-.+.+.+.+-.. | ..+.-+++.+ .-+.|++++--+
T Consensus 207 vl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L 280 (557)
T KOG3785|consen 207 VLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSL 280 (557)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHH
Confidence 777666542 3344555554444444322233444444444432111 1 1223333332 346677777666
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhC
Q 008249 358 SKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD-------LSNAFSIRDLMLSF 430 (572)
Q Consensus 358 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~ 430 (572)
.+. -|. .--.++-.|.+.+++.+|..+..++.- . ++.-|-.-.-.++..|+ ..-|.+.|...-+.
T Consensus 281 ~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--t--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S 352 (557)
T KOG3785|consen 281 MKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--T--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES 352 (557)
T ss_pred Hhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--C--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence 553 232 233455567889999999988776532 1 33333222223333333 44555555555444
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008249 431 GVSSNVF-TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITY 509 (572)
Q Consensus 431 ~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 509 (572)
+..-|.. --.++..++.-..++++.+.++..+..-=..-|...| .+..+.+..|++.+|.++|-+.....++.+..-.
T Consensus 353 a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~ 431 (557)
T KOG3785|consen 353 ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYK 431 (557)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHH
Confidence 4332221 1233444455556778888888777765333344444 4678888889999999988777654344333444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 510 TELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIP-FRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 510 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..|.++|.+.++++-|..++-++.. +.+..+ ...+.+-|.+.+.+--|-+.|+.+
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 5677888888888887766554432 223333 334455677778776666666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-09 Score=108.80 Aligned_cols=256 Identities=15% Similarity=0.097 Sum_probs=155.7
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 008249 139 WLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG 218 (572)
Q Consensus 139 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (572)
.++..+...|+.|+.+||..+|..||..|+.+.|- +|.-|.-.....+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35567778899999999999999999999999998 8888877777778889999999999998887775
Q ss_pred CCCCHhHHHHHHHHHHhCCChhH---HHHHHHHHHh----CCCCCCCccHHH-------------HHHHHHHHHhcCCHH
Q 008249 219 IRPNRVTHNILVHALCKKGLLGD---AVKFLGEVLA----DDDGKATSDVIT-------------STILMDSYFKNGDKF 278 (572)
Q Consensus 219 ~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~----~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~ 278 (572)
.|.+.||..|..+|...|++.. ..+.+..+.. .|... +.... -.+.+....-.|-++
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs--~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGS--PERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCc--HHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 6889999999999999998754 3332222221 12111 11111 112222333344444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 358 (572)
.+++++..+......- +. ...++-+.... ....++........-.|+..+|..+++.-...|+++.|..++..|.
T Consensus 157 qllkll~~~Pvsa~~~-p~--~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNA-PF--QVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHhhCCcccccc-hH--HHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 4444444443221100 00 01133222222 1222222222211114666667777776667777777777777777
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 359 KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD 416 (572)
Q Consensus 359 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 416 (572)
+.|++.+..-|-.++-+ .++..-+..++.-|.+.|+.|+..|+...+..+...|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77766666555555444 56666666666667777777777776666655555444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-09 Score=103.65 Aligned_cols=130 Identities=18% Similarity=0.126 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 368 SYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAET 447 (572)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 447 (572)
++..+...|...|++++|++++++.+++.+. .+..|..-...+-..|++.+|...++..+..... |...-+..+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 4455566666777777777777777776533 4566677777777777777777777777765443 5566666666677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 448 RGGSIFDAFSLKKEMLLDGIFPDVFTY--------NLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
++|++++|.+++....+.+..|-...+ .-...+|.+.|++..|++-|....+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777776655433322111 2345566777777777666655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-10 Score=102.83 Aligned_cols=229 Identities=16% Similarity=0.112 Sum_probs=132.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 192 NAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
+.+.++|.+.|.+.+|.+.++.-+.. .|-+.||..|-++|.+..++..|+.++.+-++..+ .++.....+.+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP----~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP----FDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC----chhhhhhhhHHHH
Confidence 34556666666666666666665543 44555666666666666666666666666665443 5555555566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 008249 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS 351 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 351 (572)
-..++.++|.++++...+.. +.++.....+..+|.-.++++-|+.+|+++...|+. +...|+.+.-+|.-.+++|.++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 66666666666666665543 344555555555566666666666666666666544 4455555555666666666666
Q ss_pred HHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 352 HFYGVLSKTGVAPD--QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 352 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
--|.+....--.|+ ..+|..+.......||+.-|.+.|+-.+..+.. ....++.|.-.-.+.|++++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66655554332232 234555555555556666666666655554433 444555555555566666666666655544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-07 Score=90.78 Aligned_cols=415 Identities=16% Similarity=0.168 Sum_probs=238.8
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH--HHHHH
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA--FITGY 198 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~ 198 (572)
.-+=++.+...|++++|.+....++..+ +.+...+..-+.++.+.+++++|+.+.+.-.. ..+++. +=.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHH
Confidence 3445667788899999999999988865 66677788888888889999999866554321 112222 23444
Q ss_pred H--hcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 199 C--RVNELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 199 ~--~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
| +.++.++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.+++... .+...-..++..-.
T Consensus 88 c~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd--~d~~~r~nl~a~~a--- 157 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD--QDEERRANLLAVAA--- 157 (652)
T ss_pred HHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHH---
Confidence 4 6788999988887 33333 3366666777888999999999999998866522 22222222222211
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHCC-------------CCCCHh-HHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLI---NGFCLNGDISSAFAYFCQMLKRG-------------FLPDVI-TYNTLL 338 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~-~~~~ll 338 (572)
+... +.+......| ..+|..+. -.+...|++.+|+++++...+.+ +.-... .-..+.
T Consensus 158 ----~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 158 ----ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred ----hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 1111 0111111122 23444433 34556788888888888773211 000111 112344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhh----HHHHHHHHHHc-----------------------------------
Q 008249 339 NCLCKQGKLDEASHFYGVLSKTGVAPDQIS----YKTIIQGLCIH----------------------------------- 379 (572)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~----------------------------------- 379 (572)
..+-..|+.++|..++...++... +|... -|.++..-...
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 556778888888888888877643 33321 12221110000
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 380 ----------GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR--CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAET 447 (572)
Q Consensus 380 ----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 447 (572)
+..+.+.++.... .+..|. ..+..++..+.+ ...+.++..++...-+....-.....-.++....
T Consensus 311 ~N~~lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 311 RNNALLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 0001111111000 011222 223333333322 2245666666666655433333455566667778
Q ss_pred hcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHH
Q 008249 448 RGGSIFDAFSLKK--------EMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR--GITPD----IITYTELI 513 (572)
Q Consensus 448 ~~g~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~ 513 (572)
..|+++.|.+++. .+.+.+..|-. ...+...+.+.++-+.|..++++.+.. .-.+. ..++.-++
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 8899999999988 55554444444 445666677777777777777776541 01122 23344445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 514 KGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQK 566 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (572)
..-.+.|+.++|..+++++.+.. ++|..+...++.+|++.. .++|..+-+.
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 55567899999999999999863 567778888888888754 6666665443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-08 Score=101.24 Aligned_cols=130 Identities=15% Similarity=0.098 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482 (572)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 482 (572)
++..+...|...|++++|....+..++..+. .+..|..-...+-+.|++.+|.+.++.....+.. |...-+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 4466778888999999999999999886433 4778888899999999999999999999987654 7777777888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 483 NLGHIHLALQLYDEMLRRGITPDII------TY--TELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~~p~~~------~~--~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
++|++++|.+++....+.+..|-.. .| .....+|.+.|++..|.+.|....+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998776433321 23 4457789999999999887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-08 Score=89.54 Aligned_cols=389 Identities=13% Similarity=0.109 Sum_probs=247.4
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.++...+..|...+.-.|++.+|.++-.... .++..-..|.+.-.+.|+-++-...-+.+.+ ...---+|
T Consensus 88 ~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSL 157 (557)
T KOG3785|consen 88 DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSL 157 (557)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhH
Confidence 5666777778777777899999988866543 3444455566777788887777666665533 22333455
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNI-LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
.+..-..-.+++|+++|.+.... .|+-...+. +.-+|.+..-++-+.++++-.+++.+ .++.+.|..+....+
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p----dStiA~NLkacn~fR 231 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP----DSTIAKNLKACNLFR 231 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC----CcHHHHHHHHHHHhh
Confidence 66665666889999999999875 345555554 44577889999999999999998665 777888887777776
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 008249 274 NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN-----GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLD 348 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 348 (572)
.=.-..|.+-..++.+.+-.. | -.+.-.++. .+-+.|++++-.+.+. .|.. -..++-.|.+.+++.
T Consensus 232 l~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVq 302 (557)
T KOG3785|consen 232 LINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQ 302 (557)
T ss_pred hhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHH
Confidence 544445555556665543111 1 122223332 3557888888777664 3332 234555788999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHH-----HHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 008249 349 EASHFYGVLSKTGVAPDQISYKTIIQG-----LCIHGDIVKAREFLLSMLEKSVVPEPH-IWNVIIDGYGRCGDLSNAFS 422 (572)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 422 (572)
+|..+.+++... .|-......++.+ ........-|.+.|+-.-+.+..-|.. --..+.+.+.-..++++...
T Consensus 303 eA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 303 EAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 999988776432 2332222222221 111223455666666555544332222 23445556666678888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008249 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTY-NLLIGASCNLGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 423 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g 501 (572)
.+..+...-...|...| .+.++++..|.+.+|+++|-.+....++ |..+| ..|.++|.+.++++.|..++-.+..
T Consensus 381 YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-- 456 (557)
T KOG3785|consen 381 YLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT-- 456 (557)
T ss_pred HHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--
Confidence 88888776544444444 4677888889999999988777655444 44555 4566788888999888777655532
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 502 ITPDIITY-TELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 502 ~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+.+..+. ..+..-|-+.+.+=-|.+.|+.+...
T Consensus 457 -~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 457 -PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 2333333 34455677777777777777777665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=81.71 Aligned_cols=49 Identities=53% Similarity=0.930 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008249 469 PDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 517 (572)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 517 (572)
||..+||+++++|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=82.10 Aligned_cols=50 Identities=38% Similarity=0.567 Sum_probs=41.6
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCK 165 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 165 (572)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.6e-09 Score=88.22 Aligned_cols=206 Identities=18% Similarity=0.128 Sum_probs=161.1
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
+...|.-.|.+.|++..|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++.....| .+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 56677778889999999999999988874 44567888888889999999999999998888776 47778888888889
Q ss_pred hcCCHhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008249 200 RVNELDKALHLFSTMANNGI-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
..|++++|.+.|++....-. .--..+|..+.-+..+.|+.+.|...|++.++..+ ....+.-.+.....+.|++-
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp----~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP----QFPPALLELARLHYKAGDYA 190 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc----CCChHHHHHHHHHHhcccch
Confidence 99999999999988876532 22356788888888888999999999998888776 55566677788888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHH
Q 008249 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITY 334 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (572)
.|...++.....+. ++..+.-..|+.--..|+.+.+.++=..+.+. -|...-|
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 88888888877764 77788777788877888887777766666554 3444433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-07 Score=83.77 Aligned_cols=306 Identities=14% Similarity=0.059 Sum_probs=188.3
Q ss_pred CCCCHhHHHHHHHHHHh--CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 219 IRPNRVTHNILVHALCK--KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI 296 (572)
Q Consensus 219 ~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 296 (572)
++|...+....+.+++. .++-..|...+-.+.... ..+.|+.....+..++...|+.++|+..|+.....+ +-+.
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~--~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i 266 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNT--TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNV 266 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhc--cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhh
Confidence 44444444444444433 344444444433333222 233778888888888888888888888888776542 1222
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 008249 297 VAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGL 376 (572)
Q Consensus 297 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 376 (572)
.........+.+.|+.+....+...+.... .-+...|..-+.......+++.|+.+-+..++.. +.+...+-.-...+
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL 344 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL 344 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence 222223334456777777777666665431 1122223333334445667777777777776653 22444454445566
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHH
Q 008249 377 CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI-LAET-RGGSIFD 454 (572)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll-~~~~-~~g~~~~ 454 (572)
...+++++|.-.|+......+. +..+|..|+..|...|++.+|...-+...+. ++.+..+...+. ..+. ....-++
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence 7778888888888877665432 6677888888888888888887766655443 222444544442 2222 2223467
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 455 AFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 455 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
|.++++.-.. +.|+ ....+.+...+...|+.++++.++++... ..||....+.|...+...+.+.+|++.|..+.
T Consensus 423 AKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 423 AKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7777777665 3555 34556666777788888888888888776 36788888888888888888888888888877
Q ss_pred Hc
Q 008249 534 TL 535 (572)
Q Consensus 534 ~~ 535 (572)
+.
T Consensus 499 r~ 500 (564)
T KOG1174|consen 499 RQ 500 (564)
T ss_pred hc
Confidence 65
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-08 Score=93.66 Aligned_cols=411 Identities=16% Similarity=0.079 Sum_probs=215.8
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL 204 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 204 (572)
.++.+..|+++.|+..|.+.+... ++|.+.|..-..+|.+.|++++|++=-.+-.+..|. -...|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 456677889999999998888774 557788888888888889988887766666666553 356788888888888899
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC-HHHHHHH
Q 008249 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD-KFQALAL 283 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 283 (572)
++|+.-|.+-++.. +.+...++.+..++ ..+.+. + .- . .++..|..+..--...+- .+.+...
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~--~~--~--~~p~~~~~l~~~p~t~~~~~~~~~~~ 150 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----D--QL--F--TKPYFHEKLANLPLTNYSLSDPAYVK 150 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----h--hh--c--cCcHHHHHhhcChhhhhhhccHHHHH
Confidence 99988888877652 22445566666665 111111 0 00 1 222233322221111110 0111111
Q ss_pred HHHHHhCCCCCCHHHHH---HHHHHHHhCCCHHH-HHHHHHHHH-HCCCCC----------------------CHhHHHH
Q 008249 284 WNDMFQKNIQTDIVAYN---VLINGFCLNGDISS-AFAYFCQML-KRGFLP----------------------DVITYNT 336 (572)
Q Consensus 284 ~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~-a~~~~~~m~-~~g~~p----------------------~~~~~~~ 336 (572)
.-+..+.+ +.+...|. .++.+.......+. .+..-..+. ..+..| -..-...
T Consensus 151 ~l~~~~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 151 ILEIIQKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHHhhcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 11111111 11111110 01111110000000 000000000 000111 0112345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHH
Q 008249 337 LLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV-------IID 409 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~ 409 (572)
+.+...+..+++.|.+-+....... -+..-++....+|...|.+.+......+..+.|-. ...-|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 6677777788888888888887754 45566677777888888888777777776666533 2222333 334
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHH
Q 008249 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDV-FTYNLLIGASCNLGHIH 488 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~ 488 (572)
+|.+.++++.+...|.+.......|+..+ +....+++....+...-. .|.. .-...=.+.+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHH
Confidence 56667788888888887665444443222 122233333333322221 1221 11111144455566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 489 LALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 489 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
.|+..|.+++... |-|...|....-+|.+.|.+..|..-.+...+. .| ....|.-=+.++....++++|.+.|++.
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666553 445556666666666666666666665555554 22 2233444444555555666666666666
Q ss_pred HhcC
Q 008249 568 LLRN 571 (572)
Q Consensus 568 l~~~ 571 (572)
++.|
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 5544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.9e-09 Score=103.40 Aligned_cols=241 Identities=17% Similarity=0.136 Sum_probs=165.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhC-----CC-CCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHC-----C-
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEM-----RP-SPNCA-TYNAFITGYCRVNELDKALHLFSTMANN-----G- 218 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 218 (572)
-..+...+...|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++.+|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456666888888888888888888877664 11 23333 3444777888888888888888888542 2
Q ss_pred CCC-CHhHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 008249 219 IRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLAD-----DDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK-- 290 (572)
Q Consensus 219 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 290 (572)
..| -..+++.|..+|.+.|++++|...++.+.+. +. ..+.-...++.+...+...+++++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 122 2346777778888888888888777766532 11 11123345677778888888888888888776542
Q ss_pred -CCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----C-CCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 291 -NIQ----TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR-----G-FLP-DVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 291 -~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 358 (572)
-.. --..+++.|...|.+.|++++|.+++++.+.. | ..+ ....++.+...|.+.+++.+|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 111 12457888888899999999999998887643 1 122 24567778888888888888888887643
Q ss_pred h----CCC--CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 359 K----TGV--APDQISYKTIIQGLCIHGDIVKAREFLLSML 393 (572)
Q Consensus 359 ~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (572)
. .|. +-...+|..|...|...|++++|.++.+.+.
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 221 2234678888999999999999998888776
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-08 Score=99.93 Aligned_cols=243 Identities=21% Similarity=0.155 Sum_probs=118.8
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CCCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C
Q 008249 223 RVTHNILVHALCKKGLLGDAVKFLGEVLAD-----DDGKATSDVI-TSTILMDSYFKNGDKFQALALWNDMFQK-----N 291 (572)
Q Consensus 223 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 291 (572)
..+...+...|...|+++.|..+++..++. |... +.+. ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~h--l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKH--LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccC--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 345555777777888888888777777654 1101 2222 2333666667777777777777666542 1
Q ss_pred --CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CC-CCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Q 008249 292 --IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR-----GF-LPDV-ITYNTLLNCLCKQGKLDEASHFYGVLSKT-- 360 (572)
Q Consensus 292 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-- 360 (572)
.+.-..+++.|...|.+.|++++|...++...+- |. .|.+ ..++.+...++..+++++|..++....+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1222345555566667777776666666554421 11 1111 12334444555555555555555433221
Q ss_pred -CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--C
Q 008249 361 -GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF-----G--V 432 (572)
Q Consensus 361 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~--~ 432 (572)
-+.++. ..-..+++.|...|...|++++|.++++.+... | .
T Consensus 357 ~~~g~~~-------------------------------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 357 DAPGEDN-------------------------------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred hhccccc-------------------------------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 001111 001223444444444455555554444443221 0 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 433 SSNVFTFNALILAETRGGSIFDAFSLKKEMLL----DGI-FPD-VFTYNLLIGASCNLGHIHLALQLYDEML 498 (572)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (572)
.-....++.+...|.+.+.+++|.++|.+... .|+ .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11123344444555555555555555444321 111 122 3455666666666666666666655554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-08 Score=85.00 Aligned_cols=199 Identities=18% Similarity=0.083 Sum_probs=155.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008249 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
..-|.-.|...|+...|..-+++.++..| .+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 34466678888888888888888888776 467788888888888888888888888888764 2256778888888888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 008249 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 315 (572)
.|++++|...|++.+...... .-..+|..+.-+..+.|+.+.|.+.|++..+.. +-.+.+.-.+.....+.|++-.|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~--~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCC--CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 888888888888888765322 455678888888888888888888888888775 44556677777888888888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
...++.....+. ++..+.-..|+.--+.|+.+.+.++=.++.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888777754 77777777788888888888877776666654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-07 Score=83.34 Aligned_cols=353 Identities=13% Similarity=0.100 Sum_probs=212.8
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH-HHHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA-FITG 197 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~ 197 (572)
--+++.+..+.+..++.+|++++..-.++. +.+......|..+|-...++..|-..++.+....|+ ..-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHH
Confidence 346778888888999999999988877763 237777888888999999999999999998876543 333322 2345
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHH--HHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVH--ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
+-+.+.+..|+.+...|.+. |+...-..-+. .....+++..+..++++.... .+..+.+.......+.|
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e------n~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE------NEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC------Cccchhccchheeeccc
Confidence 56788999999999888652 33322222222 234568888888888877542 34455666777778999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhH----HHHHHHHHHHcCCHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVIT----YNTLLNCLCKQGKLDEAS 351 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~~~A~ 351 (572)
++++|.+-|+...+-+.--....|+..+.. .+.|+++.|+++..+++++|++..+.. -.-.++. ...|+. .
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~ 233 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---L 233 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---H
Confidence 999999999998886544556677766544 467899999999999999887632110 0000000 000000 0
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 352 HFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS-VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 430 (572)
.+. ..+ =...+|.-...+.+.|+++.|.+.+.+|.-+. ...|++|...+.-.- ..+++.+..+-+.-+...
T Consensus 234 ~lh----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 VLH----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHH----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 000 000 01223333444566777888877777775432 334666655443221 234444444444445454
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 008249 431 GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGI-FPDVFTYNLLIGASC-NLGHIHLALQLYDEML 498 (572)
Q Consensus 431 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 498 (572)
++ -...||..++-.||+..-++.|-+++.+-..... -.+...|+ |++++. ..-.+++|.+-++.+.
T Consensus 306 nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 306 NP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred CC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 44 3456777777778887777777777654322110 11233333 233333 3345566655554443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-08 Score=93.51 Aligned_cols=94 Identities=15% Similarity=-0.025 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 305 (572)
|..+...+...|+.++|...|++.++..+ .+...|+.+...+...|++++|.+.|++..+.. +-+..+|..+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRP----DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44444444555555555555555555443 444555555555555555555555555554432 2233444444444
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 008249 306 FCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~ 324 (572)
+...|++++|.+.|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-08 Score=92.59 Aligned_cols=122 Identities=15% Similarity=0.001 Sum_probs=68.7
Q ss_pred CCChhhHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008249 131 GGKIGTALWLRRKMIQKG-TVP--DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKA 207 (572)
Q Consensus 131 ~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 207 (572)
.++.+.++.-+.+++... ..| ....|..+...|.+.|+.++|...|++..+..| .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 355556666666665432 111 123455555566666666666666666666554 3455666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 208 LHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 208 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.+.|++..+... -+..++..+..++...|++++|.+.|+..++..+
T Consensus 118 ~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 118 YEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 666666655321 1344555555556666666666666666665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-07 Score=89.47 Aligned_cols=199 Identities=11% Similarity=-0.017 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHH
Q 008249 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-SSNV--FTFNALILAE 446 (572)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~~~ll~~~ 446 (572)
..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|...+++...... .|+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34444555666666666666666665433 445555666666666666666666666554322 1221 2344555666
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCCC--CCHHHHHHHHHHHHh
Q 008249 447 TRGGSIFDAFSLKKEMLLDGI-FPDVFTY-N--LLIGASCNLGHIHLALQL--YDEMLRRGIT--PDIITYTELIKGHCA 518 (572)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~A~~~--~~~m~~~g~~--p~~~~~~~l~~~~~~ 518 (572)
...|++++|..++++...... .+..... + .++.-+...|....+.+. +........+ ...........++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666777777776666543221 1111111 1 222222333332222222 1111110001 111222345666777
Q ss_pred cCCHHHHHHHHHHHHHcCCC-------C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 519 RGNMKEAEEVFAKIQTLGLA-------I-DHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 519 ~g~~~~A~~~~~~m~~~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.|+.++|.++++.+...... . ..........++...|++++|.+.+.+.+.
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888888888777653211 0 111122233345578888888888877764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.5e-07 Score=88.98 Aligned_cols=432 Identities=15% Similarity=0.060 Sum_probs=265.5
Q ss_pred CchhHHHHHHHHHHHhHHHHHHHHhcCCC-CCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-hhhHHHH
Q 008249 82 NPQAVFNALDLILKENLDRLKTMRDTGPV-RCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD-VLTHNYL 159 (572)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l 159 (572)
+.+.+|..|.-.+.. ++.+..+.+.|.+ .+++-.....|+.+-..|.-.|.-..|+.+.+.-....-.|+ ...+-..
T Consensus 321 nd~ai~d~Lt~al~~-~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSR-CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 345555554443321 2333333332221 124445667899999999999999999999988665432243 3333333
Q ss_pred HHHHHH-cCChhHHHHHHHHHhhCC----CCCCHHHHHHHHHHHHhc-----------CCHhHHHHHHHHHHHCCCCCCH
Q 008249 160 VNELCK-IGDLEKADHVIREMSEMR----PSPNCATYNAFITGYCRV-----------NELDKALHLFSTMANNGIRPNR 223 (572)
Q Consensus 160 i~~~~~-~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~ 223 (572)
-..|.+ .+.++++++.-.++.... .......|..+.-+|... ....++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 344433 366777766666655511 112234454444444432 2246788889998776532 44
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 303 (572)
.....+.--|+..++++.|.+...+.++.++ . .+...|..|.-.+.-.+++.+|+.+.+.....- ..|......-+
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-~--~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNR-G--DSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-C--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 4444455567888999999999999999854 4 889999999999999999999999998877641 12222222223
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCC
Q 008249 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT--GVAPDQISYKTIIQGLCIHGD 381 (572)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 381 (572)
+.-...++.++++.....+..- .. +.. ..-..++-....+....+.-. ...-...++..+...... +
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~-we-~~~-------~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~ 623 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLAL-WE-AEY-------GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--Q 623 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHH-HH-hhh-------hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--h
Confidence 3334467777777766665532 00 000 011111112222222222111 011112233332222211 1
Q ss_pred HHHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008249 382 IVKAREFLLSMLEKSVVP--E------PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIF 453 (572)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 453 (572)
...+..-.. +...-..| + ...|......+.+.+..++|...+.+..... +.....|......+...|.++
T Consensus 624 ~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 624 LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhH
Confidence 111000000 11111112 2 2245666777888889999987777776542 335667777777888899999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008249 454 DAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQ--LYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFA 530 (572)
Q Consensus 454 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 530 (572)
+|.+.|...... .|+ ......+...+.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.++|.+.|+
T Consensus 702 EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 702 EAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999988874 455 6678899999999999888888 999999875 6678999999999999999999999999
Q ss_pred HHHHc
Q 008249 531 KIQTL 535 (572)
Q Consensus 531 ~m~~~ 535 (572)
...+.
T Consensus 779 aa~qL 783 (799)
T KOG4162|consen 779 AALQL 783 (799)
T ss_pred HHHhh
Confidence 98876
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.8e-07 Score=87.93 Aligned_cols=198 Identities=16% Similarity=0.082 Sum_probs=93.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHHh
Q 008249 337 LLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV-PE--PHIWNVIIDGYGR 413 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~--~~~~~~li~~~~~ 413 (572)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... |+ ...|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555555555555555532 223344445555555555555555555555443211 11 1223345555556
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 008249 414 CGDLSNAFSIRDLMLSFGV-SSNVFTF-N--ALILAETRGGSIFDAFSL--KKEMLLDGI--FPDVFTYNLLIGASCNLG 485 (572)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~ll~~~~~~g~~~~a~~~--~~~m~~~~~--~p~~~~~~~li~~~~~~g 485 (572)
.|++++|..+++....... .+..... + .++.-+...|....+.+. +........ ............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 6666666666655543221 1111111 1 112222223322222221 111111000 111122224566677888
Q ss_pred CHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 486 HIHLALQLYDEMLRRGIT--------PDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 486 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+.++|..+++.+...... ...........++...|+.++|.+.+......
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888653211 01222333444566889999999999888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-07 Score=87.22 Aligned_cols=387 Identities=15% Similarity=0.049 Sum_probs=211.6
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD-VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
++|.+.|..=..+|...|++++|++=-.+-++. .|+ +..|.....++.-.|++++|+..|.+-++..+ .|...++.
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~-~n~~L~~g 109 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDP-SNKQLKTG 109 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCC-chHHHHHh
Confidence 458889999999999999999998877666654 344 46899999999999999999999999988776 47777888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCCccHHHH---HHHHH
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG-LLGDAVKFLGEVLADDDGKATSDVITS---TILMD 269 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~l~~ 269 (572)
+..++.. +.+. +.. --++..|..+..--.... ..+.+.....+.+..++ .++..| ..++.
T Consensus 110 l~~a~~~----~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p----~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 110 LAQAYLE----DYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP----TSLKLYLNDPRLMK 173 (539)
T ss_pred HHHhhhH----HHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc----HhhhcccccHHHHH
Confidence 8777711 1111 110 011222221111000000 00111111111111111 111110 00111
Q ss_pred HHHhcCCHHH-HHHHHHHHHh-CCCC----------------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 270 SYFKNGDKFQ-ALALWNDMFQ-KNIQ----------------------TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 270 ~~~~~g~~~~-A~~~~~~~~~-~~~~----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+.......+. ....-..+.. .+.. .-..-...+.+...+..+++.|++.+....+.
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 1100000000 0000000000 0000 01122345666777777888888888887776
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHH-------HHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008249 326 GFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYK-------TIIQGLCIHGDIVKAREFLLSMLEKSVV 398 (572)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (572)
. -+..-++....+|...|.+.+....-+...+.|.. ...-|+ .+..+|.+.++.+.++..|.+.+.....
T Consensus 254 ~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 254 A--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred h--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 3 35555566667778888777776666665555422 111222 2333556667788888888887665433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 399 PEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLI 478 (572)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 478 (572)
|+. ..+....+++....+...-.++.. ..-...-...+.+.|++..|+..|.+++...+. |...|....
T Consensus 331 ~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRA 399 (539)
T KOG0548|consen 331 PDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRA 399 (539)
T ss_pred HHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHH
Confidence 322 122333444444444333322221 111112244566777777787777777776522 577777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 479 GASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
-+|.+.|.+..|++-.+..++.. ++....|..=..++....+++.|.+.|++.++.
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777777777766652 333455555555666666777777777777765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-07 Score=82.86 Aligned_cols=324 Identities=11% Similarity=0.012 Sum_probs=201.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHH-HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNY-LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
+.+......|...|....++..|-..++.+-.. .|...-|.. -...+-+.+.+.+|+++...|.+. ++...-..
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~l 115 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVL 115 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHH
Confidence 347778888999999999999999999998876 466665544 456778889999999999888653 22221111
Q ss_pred HHH--HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 194 FIT--GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 194 li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
-+. ..-..+++..+..+.++....| +..+.+...-...+.|+.+.|.+-|+...+.+. - .....||. .-+.
T Consensus 116 qLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG-y--qpllAYni-ALaH 188 (459)
T KOG4340|consen 116 QLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSG-Y--QPLLAYNL-ALAH 188 (459)
T ss_pred HHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcC-C--CchhHHHH-HHHH
Confidence 122 2335788999999988876433 455556666666799999999999999998775 2 33445554 4456
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 008249 272 FKNGDKFQALALWNDMFQKNIQTDIVA----YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL 347 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 347 (572)
.+.|+.+.|++...+++++|++..+.. -.-.++.- ..|+. . .|..++ -+..+|.-...+.+.|++
T Consensus 189 y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~----~lh~Sa---l~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 189 YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---L----VLHQSA---LVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---H----HHHHHH---HHHHhhhhhhhhhhcccH
Confidence 678999999999999999986533221 00001000 00000 0 011110 122344445556788888
Q ss_pred HHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 348 DEASHFYGVLSKTG-VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 348 ~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
+.|.+.+-+|..+. ...|++|...+.-. -..+++.+..+-+.-+.+.++- ...||..++-.||+..-++.|-.++-+
T Consensus 258 eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 258 EAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 88888887775432 23455665444321 1245566666666667766654 466788888889998888888877654
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 427 MLSFGV-SSNVFTFNALILAETRGGSIFDAFSLKKEML 463 (572)
Q Consensus 427 ~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 463 (572)
-...-. -.+...|+.|=......-..++|.+-+..+.
T Consensus 336 n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 336 NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 222111 0133344433222233445666666555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-06 Score=82.56 Aligned_cols=393 Identities=14% Similarity=0.080 Sum_probs=228.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008249 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
..+=++.+...|++++|.+...++...+| .+...+..-+-++.+.+++++|+.+.+.-... ..+..-+..-..+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 33445667788999999999999999875 45666777777889999999999666543211 1111111223344558
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCCHHH
Q 008249 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC-LNGDISS 314 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 314 (572)
.+..++|...++-+- . .+..+...-...+.+.|++++|+++|+.+.+.+. ++ +...+++-+ ..+-
T Consensus 92 lnk~Dealk~~~~~~-----~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~a--- 157 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD-----R--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVAA--- 157 (652)
T ss_pred cccHHHHHHHHhccc-----c--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHHH---
Confidence 999999999998221 2 4555667777889999999999999999987753 22 222221111 1110
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHH---HHHHHcCCHHHHHHHHHHHHhCC-------CC------CCH-hhHHHHHHHHH
Q 008249 315 AFAYFCQMLKRGFLPDVITYNTLL---NCLCKQGKLDEASHFYGVLSKTG-------VA------PDQ-ISYKTIIQGLC 377 (572)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~g~~~~A~~~~~~~~~~~-------~~------~~~-~~~~~li~~~~ 377 (572)
+... ..+......| ..+|..+. -.+...|++.+|++++....+.+ -. .+. ..--.+.-.+-
T Consensus 158 ~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 158 ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 1111 1122222233 33444443 35567899999999999883221 01 011 11223444566
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCC----------------HHHH-----------------
Q 008249 378 IHGDIVKAREFLLSMLEKSVVPEPHIW----NVIIDGYGRCGD----------------LSNA----------------- 420 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~----------------~~~A----------------- 420 (572)
..|+-.+|..++...++.++. |.... |-++..-....- .+.+
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999887654 32111 111111000000 0000
Q ss_pred ---------HHHHHHHHh-CCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008249 421 ---------FSIRDLMLS-FGVSSNVFTFNALILAET--RGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIH 488 (572)
Q Consensus 421 ---------~~~~~~~~~-~~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 488 (572)
.++.+.... .+..|. ..+..++..+. +...+.++..++...-+....-.....-..+......|+++
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 001111111 112222 23333333322 22246677777777666533323455556677788899999
Q ss_pred HHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChH----HHHHHHHHHHhc
Q 008249 489 LALQLYD--------EMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL--GLAIDHI----PFRILKKRYRRM 554 (572)
Q Consensus 489 ~A~~~~~--------~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----~~~~l~~~~~~~ 554 (572)
.|.+++. ...+.+..| .+..++...+.+.++.+.|..++..+... .-.+... ++.-+...-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 444444334 44556777778888877787777776542 1112222 233333334467
Q ss_pred CCHHHHHHHHHHHHhcC
Q 008249 555 KESDKARDIHQKWLLRN 571 (572)
Q Consensus 555 g~~~~A~~~~~~~l~~~ 571 (572)
|+-++|..+++++++.+
T Consensus 472 G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN 488 (652)
T ss_pred CchHHHHHHHHHHHHhC
Confidence 99999999999998865
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-06 Score=93.65 Aligned_cols=340 Identities=14% Similarity=0.038 Sum_probs=214.1
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---Cc--cHHHHHHHHHHH
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKA---TS--DVITSTILMDSY 271 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 271 (572)
.+...|+++.+..+++.+.......+..........+...|+++++...+..+...-.... .+ .......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777766552211111222333444556678999999999988765321000 01 222333445566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHhHHHHHHHHHH
Q 008249 272 FKNGDKFQALALWNDMFQKNIQTDI----VAYNVLINGFCLNGDISSAFAYFCQMLKR----GF-LPDVITYNTLLNCLC 342 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~ll~~~~ 342 (572)
...|++++|...+++....-...+. ...+.+...+...|++++|...+.+.... |. .+...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999988763111121 34455666778899999999999887643 11 111234556667788
Q ss_pred HcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHH
Q 008249 343 KQGKLDEASHFYGVLSKT----GVA--P-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKS--VVP--EPHIWNVIIDGY 411 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~ 411 (572)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999988776542 211 1 22334455666777899999999988876531 111 233455566677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHH
Q 008249 412 GRCGDLSNAFSIRDLMLSFGVS-SNVFTF-----NALILAETRGGSIFDAFSLKKEMLLDGIFPDV---FTYNLLIGASC 482 (572)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~-p~~~~~-----~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~ 482 (572)
...|+++.|...++........ .....+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999988887542110 011111 11224445678999999888775542211111 11345677788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008249 483 NLGHIHLALQLYDEMLRR----GITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
..|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.++.+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999988753 33322 2466777888999999999999999998763
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-06 Score=87.05 Aligned_cols=216 Identities=19% Similarity=0.171 Sum_probs=124.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 008249 305 GFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVK 384 (572)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 384 (572)
.+...|+++.|...|-+... ....+.+......+.+|..+++.+.... .-..-|..+.+.|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence 34445555555555533221 1223445556667777777777666542 223445666677777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 385 AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 464 (572)
|.++|.+.- .++-.|.+|.+.|+++.|.++-++.. |+......|-.-..-.-+.|++.+|.++|-...
T Consensus 784 ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 784 AEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 777775532 25556777777777777777665543 333344555555555666777777777664332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHH
Q 008249 465 DGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPF 544 (572)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 544 (572)
.|+ ..|..|-+.|..+..+++.++-.- ..-..|...+..-|-..|+...|.+.|-+... |
T Consensus 852 ---~p~-----~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~ 911 (1636)
T KOG3616|consen 852 ---EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------F 911 (1636)
T ss_pred ---Cch-----HHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------H
Confidence 244 235566677777777666655321 11124555666666677777777666654433 4
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 008249 545 RILKKRYRRMKESDKARDI 563 (572)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~ 563 (572)
.+-++.|..++.|++|.++
T Consensus 912 kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHH
Confidence 4455555555555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-05 Score=74.60 Aligned_cols=135 Identities=9% Similarity=0.069 Sum_probs=91.5
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+-|..+|+.||+-+..+ .+++++..++++... .+-.+..|..-|..-.+.++++..+.+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 56889999999977665 999999999999875 35566788999999999999999999999987643 467778777
Q ss_pred HHHHHhc-CCHh----HHHHHHHHH-HHCCCCCC-HhHHHHHHHHH---------HhCCChhHHHHHHHHHHhCC
Q 008249 195 ITGYCRV-NELD----KALHLFSTM-ANNGIRPN-RVTHNILVHAL---------CKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 195 i~~~~~~-g~~~----~A~~~~~~m-~~~g~~p~-~~~~~~ll~~~---------~~~g~~~~a~~~~~~~~~~~ 253 (572)
++.--+. |+.. ...+.|+-. .+.|+.+- ...|+..+..+ ....+++...+++.+++...
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 7654432 2222 233334433 33454432 23355444433 23345666777888877644
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-06 Score=92.62 Aligned_cols=336 Identities=12% Similarity=-0.030 Sum_probs=212.9
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHH
Q 008249 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI------QTD--IVAYNVLI 303 (572)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~li 303 (572)
.....|+++.+...++.+..... . .+..........+...|+++++...+......-- .+. ......+.
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~-~--~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVL-L--ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHH-h--cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 34456777777777665421110 1 1222234455566788999999999987754310 111 11222233
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHH
Q 008249 304 NGFCLNGDISSAFAYFCQMLKRGFLPDV----ITYNTLLNCLCKQGKLDEASHFYGVLSKT----GVA-PDQISYKTIIQ 374 (572)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~ 374 (572)
..+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+.... |.. ....++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4566789999999999988763111121 23455666778899999999998887643 111 11234556667
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 008249 375 GLCIHGDIVKAREFLLSMLEK----SVV--P-EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF----GVSSNVFTFNALI 443 (572)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~ll 443 (572)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... +.......+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788899999999998887652 211 1 2233445566677889999999998877542 2111233455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 008249 444 LAETRGGSIFDAFSLKKEMLLDG--IFPDVF--TY--NLLIGASCNLGHIHLALQLYDEMLRRGITPD---IITYTELIK 514 (572)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~--~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~ 514 (572)
..+...|++++|.+.+....... ...... .. ...+..+...|+.+.|...+........... ...+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 67888999999999988875421 111111 10 1122444568999999999877654211111 112456778
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 515 GHCARGNMKEAEEVFAKIQTL----GLAID-HIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
++...|+.++|...++++... |..++ ..+...+..++.+.|+.++|.+.+.+.++.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888999999999999988763 33322 235667778899999999999999998764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-06 Score=87.56 Aligned_cols=185 Identities=14% Similarity=0.051 Sum_probs=122.5
Q ss_pred ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008249 133 KIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFS 212 (572)
Q Consensus 133 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (572)
+...|+..|-+..+... .=...|..|...|+..-+...|.+.|++..+.++ .+...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 35666666655555421 1234677888888877788888888888888765 467778888888888888888888743
Q ss_pred HHHHCCC-CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 213 TMANNGI-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 213 ~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
..-+... ..-...|....-.|.+.++..+|..-|+..++..| .|...|..++.+|...|++..|+++|.+.....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP----kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP----KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc----hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 3322210 00112233344456677888888888888888766 788888888888888888888888888777653
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 292 IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
+.+...--...-.-+..|.+.+++..+.....
T Consensus 627 -P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 -PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22222222233345567777777777766543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.6e-05 Score=76.68 Aligned_cols=383 Identities=14% Similarity=0.111 Sum_probs=259.9
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
|+..-...+.++...+-+.+-+++++++.-.. +..+...-|.|+-.-.+. +..+..+.++++...+. |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------H
Confidence 44555667778888888888888888776432 122333444455444443 34455556666544332 33 2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
.......+-+++|..+|++.. .+......|+. ..+.++.|.++-++. ..+.+|..+..+-.+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~---------n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC---------NEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh---------CChHHHHHHHHHHHhc
Confidence 344556677888888887753 35555666654 346667777776655 5567899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFY 354 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 354 (572)
|.+.+|++-|-+. .|+..|..+++...+.|.+++-.+++....+..-.|.+. ..++-+|++.++..+.++++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 9999998877554 377889999999999999999999887777665566554 46788899999988776654
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008249 355 GVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS 434 (572)
Q Consensus 355 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 434 (572)
.-|+......+.+-|...+.++.|.-++... ..|..|...+...|++..|...-++. .
T Consensus 1190 -------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------n 1247 (1666)
T KOG0985|consen 1190 -------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------N 1247 (1666)
T ss_pred -------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------c
Confidence 3478888888888899999998887777543 45888888899999999888765543 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
+..||-.+-.+|...+.+.-| +|...++.....-..-|+..|-..|-+++-+.+++...... +.....|+-|.-
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELai 1321 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAI 1321 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHH
Confidence 667888888888877766543 34333344456667788899999999999998887765321 234456777776
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCC------CChHHHHHHHHHHHhcCCHHHHH
Q 008249 515 GHCARGNMKEAEEVFAKIQTL-GLA------IDHIPFRILKKRYRRMKESDKAR 561 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~-g~~------p~~~~~~~l~~~~~~~g~~~~A~ 561 (572)
.|.+- ++++..+.++-.... +++ .....|.-++-.|.+-..+|.|.
T Consensus 1322 LYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1322 LYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 66655 466666666655443 111 01223555665666655555543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-05 Score=72.22 Aligned_cols=305 Identities=12% Similarity=0.061 Sum_probs=203.4
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH-HHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCA-TYNA 193 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ 193 (572)
+.++.-..-+...+...|++.+|+.-|...++.. +.+-.++..-...|...|+...|+.=+.++++.. ||-. +-..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQ 111 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHH
Confidence 3466667778889999999999999999888752 2223344444567888899999999999988854 5533 2223
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HhH------------HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCc
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPN--RVT------------HNILVHALCKKGLLGDAVKFLGEVLADDDGKATS 259 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 259 (572)
-...+.+.|++++|..=|+..++....-+ ... ....+..+...|+...|+.....+++..+ .
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~----W 187 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP----W 187 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc----c
Confidence 34567899999999999999987642111 111 22334455678899999999999998766 8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHH----
Q 008249 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYN---- 335 (572)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~---- 335 (572)
+...|..-..+|...|++..|+.-++...+.. ..+..++..+-..+...|+.+.++...++..+. .||...+-
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 88899999999999999999988887776654 456677777778888899999999988888875 55543221
Q ss_pred HH---------HHHHHHcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 336 TL---------LNCLCKQGKLDEASHFYGVLSKTGVAPDQ---ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHI 403 (572)
Q Consensus 336 ~l---------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 403 (572)
.+ +......+++.++.+-.+...+....... ..+..+-.++...+++.+|++...++++.... |+.+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHH
Confidence 11 11123344555555555555443222111 22333444555566666776666666654322 4556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 404 WNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 430 (572)
+.--..+|.-...++.|+.-|+...+.
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 666666666666666666666666654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.7e-08 Score=89.05 Aligned_cols=24 Identities=8% Similarity=-0.140 Sum_probs=9.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 300 NVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
...+..|.+.++++.|.+.++.|.
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.9e-05 Score=69.10 Aligned_cols=317 Identities=18% Similarity=0.095 Sum_probs=170.3
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHH-HHH
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHN-ILV 230 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll 230 (572)
++.-..-+...+...|++.+|+.-|....+.+| .+-.++..-...|...|+-..|+.=+++.++. +||...-. .-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 344445567778888999999999999887554 23334444556788889999999999998874 77754322 234
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITST------------ILMDSYFKNGDKFQALALWNDMFQKNIQTDIVA 298 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 298 (572)
..+.+.|.+++|..-|+.++...+.. ......+. ..+..+...|+...|++....+.+.. +-|...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 56789999999999999999877521 11111111 11223333444444544444444432 333444
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 008249 299 YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI 378 (572)
Q Consensus 299 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 378 (572)
|..-..+|...|.+..|+.-++..-+.. ..+..++-.+-..+...|+.+.++...++..+. .||...+...-.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK---- 264 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK---- 264 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH----
Confidence 4444444444555544444443333221 112333333344444444444444444444442 233322111100
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHH
Q 008249 379 HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFT---FNALILAETRGGSIFDA 455 (572)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~g~~~~a 455 (572)
.+.+..+.++. +......+++.++.+..+...+..+...... +..+-.++...|++.+|
T Consensus 265 --klkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 265 --KLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred --HHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 00001111111 1112344556666666666555443322222 23344555666777777
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 456 FSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 456 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
++.-.+..+. .|| ..++.--..+|.-...++.|+.-|+...+.
T Consensus 327 iqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 327 IQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 7777766653 344 666666666777777777777777776664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-07 Score=88.02 Aligned_cols=257 Identities=17% Similarity=0.104 Sum_probs=165.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 008249 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL 347 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 347 (572)
++-+.-.|++..++.-.+ .....-..+......+.+++...|+++.++. ++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccch
Confidence 345566899999887666 3322222334455667888999998776543 433333 66666665555444433444
Q ss_pred HHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 348 DEASHFYGVLSKTGVAP-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 348 ~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
+.+..-++........+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444443333222 2222223334455678999999887643 3667777888999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008249 427 MLSFGVSSNVFTFNALILAETR----GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 427 ~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
|.+.. .| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++++..+.+
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 98753 33 344445544432 34689999999998765 56788889999999999999999999999987653
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChH
Q 008249 503 TPDIITYTELIKGHCARGNM-KEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 503 ~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ 542 (572)
+-+..+...++.+....|+. +.+.+++.++... .|+..
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~ 270 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHP 270 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCCh
Confidence 44567777788888888887 6778888888875 45543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-07 Score=87.44 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=61.2
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 008249 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312 (572)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 312 (572)
+.+.|++.+|.-.|+..++.+| .+...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP----QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 4566777777777777777665 667777777777777777777777777777665 55666666666777777777
Q ss_pred HHHHHHHHHHHHC
Q 008249 313 SSAFAYFCQMLKR 325 (572)
Q Consensus 313 ~~a~~~~~~m~~~ 325 (572)
.+|+..++..+..
T Consensus 370 ~~Al~~L~~Wi~~ 382 (579)
T KOG1125|consen 370 NQALKMLDKWIRN 382 (579)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-05 Score=79.71 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHH-----HHHHHhcC-CHHHHHHHH
Q 008249 511 ELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL-----KKRYRRMK-ESDKARDIH 564 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-----~~~~~~~g-~~~~A~~~~ 564 (572)
.+...+-..|++++|-+.+-+..+.+. -..||-.. -.-+.+.| +.++|.++|
T Consensus 1000 k~a~~ledegk~edaskhyveaiklnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHHhhccc--ccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 344455677888888777777776531 12233221 12245566 667777665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-05 Score=78.86 Aligned_cols=241 Identities=16% Similarity=0.131 Sum_probs=151.3
Q ss_pred CHHhHHHHHH--HHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC---------CC
Q 008249 117 DYRRHVAVIR--DLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR---------PS 185 (572)
Q Consensus 117 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~ 185 (572)
|..|-..+++ .|..-|+.+.|.+-.+.+. +...|..+...+.+.++++-|.-.+-.|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445555554 3566788888877766554 34568888888888777776655544442210 11
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH
Q 008249 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (572)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (572)
++ .+=....-.....|..++|..+|.+-++ |..|=..|-..|.+++|.++-+.--.. .-..||.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi------HLr~Tyy 862 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI------HLRNTYY 862 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce------ehhhhHH
Confidence 11 1112222334467888888888887764 233445567788888888776543221 2234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----------hCC---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008249 266 ILMDSYFKNGDKFQALALWNDMF----------QKN---------IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG 326 (572)
Q Consensus 266 ~l~~~~~~~g~~~~A~~~~~~~~----------~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 326 (572)
....-+-..++.+.|++.|++.. ... -..|...|.-....+-..|+.+.|+.+|....+
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 66666667778888877776532 111 012334444445555567788888887776553
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008249 327 FLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLE 394 (572)
Q Consensus 327 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 394 (572)
|-.+++..|-.|+.++|.++-++- -|......+...|-..|++.+|...|.+...
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 456677777888888888776543 2667777888899999999999988887653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-05 Score=79.73 Aligned_cols=165 Identities=12% Similarity=-0.034 Sum_probs=123.6
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-CCHHHHHHHHHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPS-PNCATYNAFITG 197 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~ 197 (572)
..|..|...|+...+...|.+.|+...+.+ .-+........+.|++..+++.|..+.-...+..+. .-...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 478999999998889999999999988764 346677888999999999999998885554443321 112234445556
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCH
Q 008249 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK 277 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (572)
|...++...|+.-|+...+..+ -|...|..+..+|...|++..|.+.|.++....| .+...-.-..-..+..|.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP----~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP----LSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc----HhHHHHHHHHHHHHHhhhH
Confidence 7778888999999988887543 3777888999999999999999999988887654 4444433444456778888
Q ss_pred HHHHHHHHHHHh
Q 008249 278 FQALALWNDMFQ 289 (572)
Q Consensus 278 ~~A~~~~~~~~~ 289 (572)
.+|+..+..+..
T Consensus 647 keald~l~~ii~ 658 (1238)
T KOG1127|consen 647 KEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-06 Score=84.71 Aligned_cols=217 Identities=17% Similarity=0.121 Sum_probs=109.4
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKA 207 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 207 (572)
+.+.|++.+|.-.|+...... |-+..+|..|.......++-..|+..+++..+..| .|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 455566666666666655543 33555666666666666666666666666666555 3555666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHH-----------HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 208 LHLFSTMANNGIRPNRVTHNILV-----------HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 208 ~~~~~~m~~~g~~p~~~~~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
+..++..+...++ |..+. ..+.....+....++|-++....+.. .|..++..|.-.|.-.|+
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~--~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK--IDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC--CChhHHhhhHHHHhcchH
Confidence 6666655433210 00000 00111112223344444444433322 445555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHH
Q 008249 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
+++|.+.|+..+... +-|...||.|...++...+.++|+.-|.+.++. +|+ +.....|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 555555555555543 334455555555555555555555555555543 333 1222233334555555555555444
Q ss_pred H
Q 008249 356 V 356 (572)
Q Consensus 356 ~ 356 (572)
.
T Consensus 523 ~ 523 (579)
T KOG1125|consen 523 E 523 (579)
T ss_pred H
Confidence 3
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00022 Score=73.85 Aligned_cols=204 Identities=16% Similarity=0.122 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 008249 295 DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQ 374 (572)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 374 (572)
.+..|..+..+-.+.|.+.+|++-|-+. .|+..|..+++...+.|.+++-.+++....+..-.|.. =+.++-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 3456777777777777777776655432 25666777777777777777777777666665444433 346677
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 375 GLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFD 454 (572)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 454 (572)
+|++.++..+..+++ ..|+......+.+-|...|.++.|.-+|. ++..|..|...+...|++..
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHH
Confidence 777777766554443 23566666777777777777777776665 44456677777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 455 AFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 455 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
|.+.-++. -+..||.-+-.+|...+.+.-|. |....+.....-..-++.-|...|.+++.+.+++...
T Consensus 1239 AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1239 AVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 76665543 25667877777777766655442 2222233444556677778888888888777776554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.7e-06 Score=87.89 Aligned_cols=188 Identities=14% Similarity=0.085 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 335 NTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC 414 (572)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 414 (572)
.++++.-..-|.-+...++|+++.+. .....+|..|...|.+.+..++|.++++.|.++-- .....|...+..+.+.
T Consensus 1501 iA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1501 IAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcc
Confidence 33333333334444444555544442 11223444555555555555555555555554321 2344455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 415 GDLSNAFSIRDLMLSFGVS-SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQL 493 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 493 (572)
.+-+.|..++.+..+.-+. -........+..-.+.|+.+.+..+|+......++ -...|+.+++.-.++|+.+.+..+
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHH
Confidence 5555555555554442111 01223333334444555555555555555544221 344566666666666666666666
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 008249 494 YDEMLRRGITPDI--ITYTELIKGHCARGNMKEAE 526 (572)
Q Consensus 494 ~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~ 526 (572)
|++....++.|-. ..|...+.---..|+-+.++
T Consensus 1657 feRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1657 FERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 6666655554443 34444444444445544333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-06 Score=87.01 Aligned_cols=231 Identities=14% Similarity=0.043 Sum_probs=121.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHH
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQK-NIQ---TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITY 334 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (572)
.+...|-..|......++.++|.+++++.... +.+ --.-.|.++++.-..-|.-+...++|+++.+. + -....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-c-d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-C-DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-c-chHHHH
Confidence 44455555555555555555555555555432 111 11223444444444445555556666655543 1 123345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 008249 335 NTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP-EPHIWNVIIDGYGR 413 (572)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 413 (572)
..|...|.+.+++++|.++++.|.+. +......|...++.+.+.++-+.|..++.+.++.-++. ........+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 55666666666666666666666554 23445566666666666666666666666655532110 12233444455556
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 008249 414 CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD--VFTYNLLIGASCNLGHIHLAL 491 (572)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 491 (572)
.|+.+++..+|+.....-++ -...|+..++.-.++|+.+.+..+|++....++.|- -..|...+..--..|+-+.+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 66666666666666554222 445666666666666666666666666666655544 234444444444445544433
Q ss_pred HH
Q 008249 492 QL 493 (572)
Q Consensus 492 ~~ 493 (572)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-05 Score=74.40 Aligned_cols=124 Identities=11% Similarity=0.080 Sum_probs=52.5
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCh-
Q 008249 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN-ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL- 239 (572)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~- 239 (572)
.+...+..++|+.+..++.+..| -+..+|+..-.++...| ++++++..++++.+...+ +..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence 33344445555555555554443 13334444433444444 344455555444443211 223333333333333331
Q ss_pred -hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 240 -GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 240 -~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
+++..+++++++.++ .+..+|+...-.+...|+++++++.++++++.+
T Consensus 124 ~~~el~~~~kal~~dp----kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 124 ANKELEFTRKILSLDA----KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 334444444444333 444444444444444444444444444444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00014 Score=73.63 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=41.6
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKA 207 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 207 (572)
-...|.+++|..+|++-.+. ..|-..|...|.+++|.++-+.-.+... ..||......+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 34557778888887776552 3344455666777777666554433222 23444444455555556666
Q ss_pred HHHHHH
Q 008249 208 LHLFST 213 (572)
Q Consensus 208 ~~~~~~ 213 (572)
++.|++
T Consensus 878 leyyEK 883 (1416)
T KOG3617|consen 878 LEYYEK 883 (1416)
T ss_pred HHHHHh
Confidence 555553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-06 Score=78.55 Aligned_cols=187 Identities=12% Similarity=0.047 Sum_probs=126.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh---hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH--H
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV---LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC--A 189 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 189 (572)
+.....+..+...+.+.|+++.|...|+++.... +.++ .++..+...+.+.|++++|...++++.+..|.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456678888889999999999999999988763 2222 46777888999999999999999999887664322 2
Q ss_pred HHHHHHHHHHhc--------CCHhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCcc
Q 008249 190 TYNAFITGYCRV--------NELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD 260 (572)
Q Consensus 190 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 260 (572)
++..+..++... |++++|.+.|+.+... .|+. ..+..+..... . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~----------- 165 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL----------- 165 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH-----------
Confidence 444455555544 6788888888888765 3332 22222211100 0 0000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 261 VITSTILMDSYFKNGDKFQALALWNDMFQKN--IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
......+...|.+.|++++|+..++...+.. .+.....+..+...+.+.|++++|...++.+...
T Consensus 166 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112245667888888888888888887652 1223567788888888888888888888877654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-05 Score=74.06 Aligned_cols=214 Identities=14% Similarity=0.073 Sum_probs=143.7
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC-ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG-DLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (572)
++..+-..+...++.++|+.+.+.+++.. +-+..+|+.-..++.+.| ++++++..++++.+..++ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 55555666677789999999999998863 335567777777777777 578999999999988774 666788776666
Q ss_pred HhcCCH--hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc--
Q 008249 199 CRVNEL--DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN-- 274 (572)
Q Consensus 199 ~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 274 (572)
.+.|+. ++++.+++++.+... -|..+|.....++...|+++++++.++++++.++ .+..+|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~----~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV----RNNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC----CchhHHHHHHHHHHhccc
Confidence 666763 678889988887653 3778888888888899999999999999999876 7788888777666554
Q ss_pred -CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 008249 275 -GDK----FQALALWNDMFQKNIQTDIVAYNVLINGFCLN----GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLC 342 (572)
Q Consensus 275 -g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (572)
|.. ++.++...+++... +-|...|+-+...+... +...+|.+.+.+....+ +.+...+..|++.|+
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred cccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 222 34455554555443 44555666555555442 22334555544443321 223344444444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-08 Score=59.31 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=24.4
Q ss_pred CCCcCHHhHHHHHHHHHhCCChhhHHHHHHHH
Q 008249 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKM 144 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 144 (572)
|++||+.+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777776
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4e-06 Score=73.82 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=109.4
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL 204 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 204 (572)
+..|...|+++......+.+... . ..+...++.+++...++...+..| .+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 34566677776654443322211 0 011225666777777788777776 5788888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhCCC--hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 008249 205 DKALHLFSTMANNGIRPNRVTHNILVHAL-CKKGL--LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 281 (572)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++.++.++ .+..++..+...+.+.|++++|+
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP----~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA----NEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC----CChhHHHHHHHHHHHcCCHHHHH
Confidence 88888888888764 22666777777654 56666 4888888888888776 77788888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHH
Q 008249 282 ALWNDMFQKNIQTDIVAY 299 (572)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~ 299 (572)
..|+++.+.. +|+..-+
T Consensus 165 ~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 165 ELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHhhC-CCCccHH
Confidence 8888888765 4454433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-08 Score=58.60 Aligned_cols=32 Identities=50% Similarity=0.871 Sum_probs=15.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 466 GIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.9e-06 Score=84.39 Aligned_cols=214 Identities=16% Similarity=0.080 Sum_probs=147.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 335 NTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC 414 (572)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 414 (572)
..+...+.+.|-...|..+++++. .|...+.+|+..|+..+|..+..+-.++ +|++..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345566777777888888776653 3556777788888888888887777773 56777787777777666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 415 GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLY 494 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 494 (572)
.-+++|.++.+..... .-..+.......++++++.+.|+.-.+... .-..+|-.+..+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677777776654321 111112222336778888888877666422 24566667777777788888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 495 DEMLRRGITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 495 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
...... .|| ...||.+-.+|.+.|+-.+|...++++.+.+ .-+...|...+-...+.|.+++|++.+.++++.
T Consensus 543 ~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 887763 444 4778888888888888888888888888775 334455666666677888888888888877653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.8e-06 Score=72.41 Aligned_cols=156 Identities=10% Similarity=0.024 Sum_probs=114.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 373 IQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSI 452 (572)
Q Consensus 373 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 452 (572)
+..|...|+++......+.+.. |. ..+...++.+++...++...+..+ .|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 4467788888876444322211 10 122346777888888888777654 3788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 453 FDAFSLKKEMLLDGIFPDVFTYNLLIGAS-CNLGH--IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVF 529 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 529 (572)
++|...|++..+.... +...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998886433 577777777764 56676 589999999998864 456788888889999999999999999
Q ss_pred HHHHHcCCCCChHHH
Q 008249 530 AKIQTLGLAIDHIPF 544 (572)
Q Consensus 530 ~~m~~~g~~p~~~~~ 544 (572)
+++.+.. +|+..-+
T Consensus 168 ~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHhhC-CCCccHH
Confidence 9998873 4554433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.5e-06 Score=75.17 Aligned_cols=188 Identities=11% Similarity=0.005 Sum_probs=130.3
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH--hHH
Q 008249 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPS-P-NCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR--VTH 226 (572)
Q Consensus 151 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 226 (572)
.....+..+...+.+.|+++.|...|+++....|. | ...++..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35566777888888999999999999998876653 1 1246777888888999999999999999875321111 134
Q ss_pred HHHHHHHHhC--------CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 227 NILVHALCKK--------GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVA 298 (572)
Q Consensus 227 ~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 298 (572)
..+..++... |+.++|.+.++.++...+ .+...+..+..... .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~a~~~~~~----~~~~------~--------~~~ 168 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP----NSEYAPDAKKRMDY----LRNR------L--------AGK 168 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC----CChhHHHHHHHHHH----HHHH------H--------HHH
Confidence 4555555544 678889999999888765 33333322221111 0000 0 011
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 299 YNVLINGFCLNGDISSAFAYFCQMLKRGF--LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 299 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
...+...+.+.|++++|...+....+... +.....+..+...+.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22456678999999999999999987621 223567889999999999999999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-05 Score=70.86 Aligned_cols=158 Identities=19% Similarity=0.123 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC
Q 008249 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 236 (572)
..+-..+.-.|+-+.+..+........+ .+....+..+....+.|++.+|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 3344444455555555555544433222 244444445555566666666666666655432 44555666666666666
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 008249 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAF 316 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 316 (572)
|+++.|..-|.+.++..+ .+....|.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~----~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 148 GRFDEARRAYRQALELAP----NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred cChhHHHHHHHHHHHhcc----CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHH
Confidence 666666666666665443 445555566666666666666666665555543 234455555555555566666665
Q ss_pred HHHHH
Q 008249 317 AYFCQ 321 (572)
Q Consensus 317 ~~~~~ 321 (572)
.+...
T Consensus 223 ~i~~~ 227 (257)
T COG5010 223 DIAVQ 227 (257)
T ss_pred hhccc
Confidence 55443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00071 Score=65.63 Aligned_cols=410 Identities=12% Similarity=0.097 Sum_probs=239.9
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH
Q 008249 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNIL 229 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 229 (572)
+-|..+|..||.-+..+ ..+++.+.++++...-| -....|..-|..-.+..+++....+|.+-+..-+ +...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP-SSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 56888899998887766 88899999998887655 3567788888888889999999999988876533 45555555
Q ss_pred HHHHHh-CCChhH----HHHHHHHHHhCCCCCCCccHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCCCCC-
Q 008249 230 VHALCK-KGLLGD----AVKFLGEVLADDDGKATSDVITSTILMDSY---------FKNGDKFQALALWNDMFQKNIQT- 294 (572)
Q Consensus 230 l~~~~~-~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~~~~~- 294 (572)
++--.+ .|+... ..+.|+-.+..-. ....+-..|+..+..+ ..+.+++...++++++....+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 543222 333333 3344444443222 2224445566665533 33445666677777776532111
Q ss_pred -----CHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHH--CCCCCCHhH---------------HHHHHHHHHHcC
Q 008249 295 -----DIVAYNVLINGFC-------LNGDISSAFAYFCQMLK--RGFLPDVIT---------------YNTLLNCLCKQG 345 (572)
Q Consensus 295 -----~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~--~g~~p~~~~---------------~~~ll~~~~~~g 345 (572)
|-..|..=|+... +...+..|.++++++.. .|+.-...+ |..+|.- -+.+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcC
Confidence 1122222222111 12244556666665543 243322222 2222211 1111
Q ss_pred CHH---------HHHHHHHHH-HhCCCCCCHhhHHHHHHHHHHcCC--------------HHHHHHHHHHHHhCCCCCCH
Q 008249 346 KLD---------EASHFYGVL-SKTGVAPDQISYKTIIQGLCIHGD--------------IVKAREFLLSMLEKSVVPEP 401 (572)
Q Consensus 346 ~~~---------~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~ 401 (572)
-.. ...-.+++. .-.+..|+ .|.-....+...++ -+++..+++...+.-..-+.
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~pe--iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPE--IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 110 011111111 11122222 22222222222222 34555555554443222233
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 008249 402 HIWNVIIDGYGRCG---DLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFP-DVFTYNLL 477 (572)
Q Consensus 402 ~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l 477 (572)
.+|..+.+---..- ..+.....++++......--..+|..++..-.+...+..|..+|.++.+.+..+ +...++++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 33433332221111 255566666666553222233567778888888888999999999999988777 67788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcC
Q 008249 478 IGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDH--IPFRILKKRYRRMK 555 (572)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g 555 (572)
+.-+| .++...|.++|+--..+ ...+..--...+.-+...|+-..|..+|++....++.||. .+|..+++-=..-|
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 88777 48889999999986654 3344455577888888999999999999999998766654 57999999888999
Q ss_pred CHHHHHHHHHHHHh
Q 008249 556 ESDKARDIHQKWLL 569 (572)
Q Consensus 556 ~~~~A~~~~~~~l~ 569 (572)
+..-+.++-+++..
T Consensus 487 dL~si~~lekR~~~ 500 (656)
T KOG1914|consen 487 DLNSILKLEKRRFT 500 (656)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999988877653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.5e-06 Score=83.11 Aligned_cols=221 Identities=15% Similarity=0.068 Sum_probs=137.3
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHH
Q 008249 149 TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNI 228 (572)
Q Consensus 149 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 228 (572)
.+|--..-..+...+.+.|-...|..+|+++ ..|.-+|.+|+..|+..+|..+..+-.+. +||+..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 3444444455566667777777777777665 34555666777777777777766666552 566666666
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL 308 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (572)
+.+.....--+++|.++.+..-. .+-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+
T Consensus 463 LGDv~~d~s~yEkawElsn~~sa----------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISA----------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhH----------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 66666555556666666654322 122222333344667777777777666554 4456666666666677
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 008249 309 NGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKARE 387 (572)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (572)
.+++..|.+.|...... .|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++
T Consensus 532 lek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence 77777777777666653 333 4567777777777777777777777776665 3344555566666667777777777
Q ss_pred HHHHHHh
Q 008249 388 FLLSMLE 394 (572)
Q Consensus 388 ~~~~~~~ 394 (572)
.+.++..
T Consensus 609 A~~rll~ 615 (777)
T KOG1128|consen 609 AYHRLLD 615 (777)
T ss_pred HHHHHHH
Confidence 7766654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0014 Score=67.49 Aligned_cols=453 Identities=16% Similarity=0.164 Sum_probs=250.2
Q ss_pred HHHHHHHH-HHHhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHH--HHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHH
Q 008249 86 VFNALDLI-LKENLDRLKTMRDTGPVRCTLETDYRRHVAVIRD--LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNE 162 (572)
Q Consensus 86 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 162 (572)
+|..+++- .+..+.....+.+.. ||.. |..++.+ +.+.|+.++|..+++.....+.. |..+...+-..
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~-------Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~ 86 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKH-------PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNV 86 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHC-------CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHH
Confidence 55555543 244555566666554 3332 4444444 46789999999888887766533 78889999999
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC-----
Q 008249 163 LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG----- 237 (572)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----- 237 (572)
|.+.|+.++|..++++.....| +......+..+|.+.+.+.+-.+.--+|-+. ++-+...+-++++.....-
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~P--~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKYP--SEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcc
Confidence 9999999999999999988664 5777788888999988877665555555442 3445555555665554321
Q ss_pred -----ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 008249 238 -----LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALW-NDMFQKNIQTDIVAYNVLINGFCLNGD 311 (572)
Q Consensus 238 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (572)
-..-|.+.++.+++.+... .+..-.......+...|++++|++++ ....+.-...+...-+.-+..+...++
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~--~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~ 241 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKI--ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR 241 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCcc--chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence 1234667777777765211 33333334455566788899999999 444444334455555667788888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 008249 312 ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK----------------QGKLDEASHFYGVLSKTGVAPDQISYKTIIQG 375 (572)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 375 (572)
|.+..++-.++...|. |. |...++.+.+ .+..+...+......... ....|-+-+..
T Consensus 242 w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel 314 (932)
T KOG2053|consen 242 WQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLEL 314 (932)
T ss_pred hHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHH
Confidence 9999999999888753 32 3332222111 112222222222222211 11223333333
Q ss_pred HH---HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHH
Q 008249 376 LC---IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVF-------TFNALILA 445 (572)
Q Consensus 376 ~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~ll~~ 445 (572)
+. .-|+.+++.-.|-+-. |..| .|..=+..|...=..+.-..++....... ++.. .+...+..
T Consensus 315 ~kr~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~ 387 (932)
T KOG2053|consen 315 DKRYKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLL 387 (932)
T ss_pred HHHhcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHH
Confidence 33 3467776554443222 2111 22222333333333333333333332211 1110 01111111
Q ss_pred HHhcCC-----HHHHHHHHHHHH---hCC------CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHHHH
Q 008249 446 ETRGGS-----IFDAFSLKKEML---LDG------IFPDVF---------TYNLLIGASCNLGHIH---LALQLYDEMLR 499 (572)
Q Consensus 446 ~~~~g~-----~~~a~~~~~~m~---~~~------~~p~~~---------~~~~li~~~~~~g~~~---~A~~~~~~m~~ 499 (572)
-...|. -+.-..++++.. ++| +-|+.. +-+.|++.+-+.++.. +|+-+++.-..
T Consensus 388 ~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt 467 (932)
T KOG2053|consen 388 LRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT 467 (932)
T ss_pred HHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 111221 122222222221 112 223322 2356677777777655 45555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 500 RGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 500 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
.. +-|..+--.+|+.|+-.|-+..|.++|+.+.-..+.-|...|. +...+...|++..+...++..+
T Consensus 468 ~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 468 KS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHL 534 (932)
T ss_pred cC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHH
Confidence 32 3344555677888888888888888888887666666655543 3345556677777776666544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-05 Score=81.10 Aligned_cols=242 Identities=10% Similarity=0.026 Sum_probs=160.7
Q ss_pred CCCc-CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh-hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHH
Q 008249 113 TLET-DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV-LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCAT 190 (572)
Q Consensus 113 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 190 (572)
+..| +...|..|+..+...+++++|.++.+...+. .|+. ..|-.+...+...++.+++..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--------------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--------------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh---------------
Confidence 3444 6678999999999999999999999987775 4544 3444444567777776666443
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008249 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
.++.......++.-...++..|... .-+...+..+..+|-+.|+.++|..+++++++..+ .++.+.|.+...
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~----~n~~aLNn~AY~ 159 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR----DNPEIVKKLATS 159 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc----ccHHHHHHHHHH
Confidence 2333333444444444444555543 23555788899999999999999999999999876 889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 008249 271 YFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 350 (572)
|... +.++|++++.+.... +...+++.++.++|.++..... .+...+..+++.....-
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~----- 217 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHR----- 217 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhh-----
Confidence 9999 999999988887753 5566788888888888877521 12222222222111110
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYG 412 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 412 (572)
|...-+.++..+-..|-..+++++++.+++.+++.... |.....-++.+|.
T Consensus 218 ----------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ----------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 12223344555556666677777777777777776554 4555555555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00027 Score=62.28 Aligned_cols=249 Identities=16% Similarity=0.101 Sum_probs=146.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 008249 270 SYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDE 349 (572)
Q Consensus 270 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 349 (572)
-+.-.|.+..++..-...... +.+...-.-+.++|...|.+..... +.... -.|.......+......-+..+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhHH
Confidence 344455565555444333322 1233333344556666665543322 22222 13333333333333333333333
Q ss_pred H-HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 350 A-SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLML 428 (572)
Q Consensus 350 A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 428 (572)
- .++.+.+.......+......-...|+..|++++|++.+.... +......=+..+.+..+.+-|...++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3344444444333343444444456777888888888776621 23333333455667778888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008249 429 SFGVSSNVFTFNALILAETR----GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITP 504 (572)
Q Consensus 429 ~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 504 (572)
+. -+..|.+.|..++.+ .+++.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++...+. .-
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 74 356677777777654 35678888888888764 67888888888888888899999999998888764 44
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 008249 505 DIITYTELIKGHCARGNM-KEAEEVFAKIQTL 535 (572)
Q Consensus 505 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 535 (572)
++.+...++-+-...|.. +-..+.+.++...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 566666666655566654 3445566666654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-05 Score=70.35 Aligned_cols=164 Identities=17% Similarity=0.118 Sum_probs=136.4
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
|..+ ..+-..+...|+-+....+....... .+.+....+..+....+.|++..|...|++.....| +|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 4444 66777788888888887777665443 234566777789999999999999999999988776 78999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
+|.+.|++++|..-|.+..+.- .-++..++.+.-.+.-.|+.+.|..++......+. .+..+-..+.......|+
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~----ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA----ADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC----CchHHHHHHHHHHhhcCC
Confidence 9999999999999999998863 23567788888889999999999999999998775 788899999999999999
Q ss_pred HHHHHHHHHHHH
Q 008249 277 KFQALALWNDMF 288 (572)
Q Consensus 277 ~~~A~~~~~~~~ 288 (572)
+++|.++-..-.
T Consensus 218 ~~~A~~i~~~e~ 229 (257)
T COG5010 218 FREAEDIAVQEL 229 (257)
T ss_pred hHHHHhhccccc
Confidence 999998776554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.4e-05 Score=81.84 Aligned_cols=136 Identities=13% Similarity=0.018 Sum_probs=70.6
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+.++..+-.|.....+.|.+++|..+++...+.. +.+......+...+.+.+++++|+..+++.....| .+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 3445555555555555555555555555555541 22334444455555555555555555555555444 244455555
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 253 (572)
..++.+.|++++|..+|++....+ +-+..++..+..++.+.|+.++|...|+..++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 555555555555555555555422 1234455555555555555555555555555533
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.6e-05 Score=78.11 Aligned_cols=146 Identities=10% Similarity=-0.053 Sum_probs=91.3
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 363 APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442 (572)
Q Consensus 363 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 442 (572)
+.+...+..|.....+.|..++|..+++...+..+. +......++..+.+.+++++|....++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 445666666666666777777777777777665443 4455566666667777777777777766665433 45555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008249 443 ILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTEL 512 (572)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 512 (572)
..++.+.|++++|..+|+++...+.. +..++..+..++...|+.++|...|++..+. ..|-...|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 66666777777777777777663221 3566666666677777777777777776654 23444444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.2e-05 Score=79.07 Aligned_cols=169 Identities=9% Similarity=0.069 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHH
Q 008249 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITS 264 (572)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 264 (572)
.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+...++.+++.-+ .+...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~------------ 92 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS------------ 92 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh------------
Confidence 46678888888888888888888888876654 4443 3333344456666666555544 33332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 008249 265 TILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (572)
Q Consensus 265 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (572)
.....++.-...+...|.+. .-+...+..+..+|-+.|+.+++..+|+++.+.. +-|+...|.+...|...
T Consensus 93 ------~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 93 ------FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred ------cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 22222232222222333332 2233456666666777777777777777776664 34566666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 345 GKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (572)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (572)
+.++|.+++.+.... +...+++..+.+++.++...
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 777777666665543 34444555555555555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00066 Score=59.92 Aligned_cols=222 Identities=15% Similarity=0.087 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008249 84 QAVFNALDLILKENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNEL 163 (572)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 163 (572)
...|++=...+.++......-...+. +.+.++..-.-+-++|...|++.....- +.. |-.|.......+....
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~---~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFS---SSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYL 82 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhc---cccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHh
Confidence 45666666656555443333333222 2223444444455666666665443322 111 2223333333333333
Q ss_pred HHcCChhHHH-HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHH
Q 008249 164 CKIGDLEKAD-HVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242 (572)
Q Consensus 164 ~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 242 (572)
..-++.++-. ++.+.+.......+......-...|+..|++++|++...... +......=...+.+..+++-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222 233333333222232223333345556666666666555411 112222222334455556666
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 008249 243 VKFLGEVLADDDGKATSDVITSTILMDSYFK----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAY 318 (572)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 318 (572)
.+.++.|.+. .+-.+.+-|..++.+ .+.+.+|.-+|++|-++- +|++.+.+-...++...|++++|..+
T Consensus 157 ~~~lk~mq~i------ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 157 EKELKKMQQI------DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHcc------chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHH
Confidence 6666666552 222333333333332 334555566666655432 45555555555555556666666666
Q ss_pred HHHHHHC
Q 008249 319 FCQMLKR 325 (572)
Q Consensus 319 ~~~m~~~ 325 (572)
++.....
T Consensus 230 L~eaL~k 236 (299)
T KOG3081|consen 230 LEEALDK 236 (299)
T ss_pred HHHHHhc
Confidence 6555554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-05 Score=65.85 Aligned_cols=93 Identities=12% Similarity=-0.006 Sum_probs=43.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC
Q 008249 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 238 (572)
+...+...|++++|...|+......| .+...|..+..++.+.|++++|...|+...... +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 34444444555555555544444443 244444444444444555555555555444432 2234444444444444455
Q ss_pred hhHHHHHHHHHHhCC
Q 008249 239 LGDAVKFLGEVLADD 253 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~ 253 (572)
.++|...|+..+...
T Consensus 108 ~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 108 PGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHHhC
Confidence 555555555444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00042 Score=66.55 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=56.0
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHH
Q 008249 307 CLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD-QISYKTIIQGLCIHGDIVKA 385 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 385 (572)
...|++++|+..+..+.+. .+-|..........+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3455555555555555544 1222333333344555555555555555555553 233 34444455555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008249 386 REFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422 (572)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (572)
+.+++........ |+..|..|..+|...|+..++..
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 5555555544333 55555555555555555554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-05 Score=64.59 Aligned_cols=95 Identities=15% Similarity=-0.020 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008249 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
+..+...+...|++++|...|+...... +.+...+..+..++.+.|++++|...|+.++...+ .+...+..+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p----~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA----SHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCcHHHHHHHHH
Confidence 3445566666777777777777766543 23556666666677777777777777777776554 666667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 008249 271 YFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~ 290 (572)
+...|+.++|...|+.....
T Consensus 102 l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00018 Score=68.96 Aligned_cols=183 Identities=19% Similarity=0.197 Sum_probs=119.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.|+...+...+.+......-..+..++.+..+. -......-..-.+...|++++|+..++.+...-| .|+..+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHH
Confidence 345555555555544443333333333332221 1222222233344456788888888888777655 466677777
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
...+.+.|+.++|.+.++++... .|+ ......+..++.+.|++.+|..+++......+ .++..|..|..+|..
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p----~dp~~w~~LAqay~~ 420 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP----EDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----CCchHHHHHHHHHHH
Confidence 77888888888888888888765 455 44555677788888888888888888887665 777888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 274 NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
.|+..++.....+ +|...|+++.|...+....+.
T Consensus 421 ~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 421 LGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred hCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 8887777654433 345677888888877777665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-05 Score=65.58 Aligned_cols=118 Identities=13% Similarity=0.022 Sum_probs=85.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008249 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 423 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
.++...+..+. +......+...+...|++++|...++.+...+. .+...+..+...+...|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 44555554322 345566667778888888888888888877542 267777788888888888888888888887753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHH
Q 008249 503 TPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFR 545 (572)
Q Consensus 503 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 545 (572)
+.+...+..+...+...|++++|...|++..+. .|+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 556677777888888888888888888888876 45544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0008 Score=58.97 Aligned_cols=187 Identities=14% Similarity=0.150 Sum_probs=124.3
Q ss_pred CChhhHHHHHHHHHhC---C-CCCChh-hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 008249 132 GKIGTALWLRRKMIQK---G-TVPDVL-THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDK 206 (572)
Q Consensus 132 g~~~~A~~~~~~m~~~---g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 206 (572)
.+.++.++++..++.. | ..++.. .|-.++-+....|+.+.|...++.+.+.-|... ..-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-RVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHhhchhh
Confidence 4556666666665542 2 334443 234455566677888888888888777654322 111111222335688888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 207 ALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWND 286 (572)
Q Consensus 207 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 286 (572)
|.++|+.+.+.+ +.|..++..-+...-..|+.-+|++-+.+.++... .|...|.-+...|...|++++|.-.+++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~----~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM----NDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 888888888775 44667777666677777888888888888888555 8888888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHC
Q 008249 287 MFQKNIQTDIVAYNVLINGFCLNG---DISSAFAYFCQMLKR 325 (572)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 325 (572)
+.-.. |.++..+..+...+.-.| +.+-+.++|.+..+.
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 87664 445555555655554444 445567777776664
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.001 Score=58.28 Aligned_cols=187 Identities=15% Similarity=0.178 Sum_probs=99.0
Q ss_pred CCHhHHHHHHHHHHH---CC-CCCCHhH-HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 202 NELDKALHLFSTMAN---NG-IRPNRVT-HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 202 g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.+.++.++++.++.. .| ..|+..+ |..++-+....|+.+.|...++.+....+ .+..+-..-.-.+-..|+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp----~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP----GSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC----CChhHHHHHHHHHHHhhc
Confidence 455666666665543 22 3444433 33444555566666677776666666544 222222222223344566
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 008249 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGV 356 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (572)
+++|+++++.+.+.+ +.|.+++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 666666666666655 445555554444444555555666655555554 444666666666666666666666666666
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 008249 357 LSKTGVAPDQISYKTIIQGLCIHG---DIVKAREFLLSMLEK 395 (572)
Q Consensus 357 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~ 395 (572)
+.-.. |.++..+..+.+.+.-.| +..-|.++|.+.++.
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 65531 223334444444443333 344555666665554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.3e-05 Score=62.62 Aligned_cols=95 Identities=17% Similarity=0.047 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008249 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
...+...+...|++++|.+.|+.....+ +.+...+..+...+.+.|++++|...++..+..++ .+...+..+...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~ 94 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP----DDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CChHHHHHHHHH
Confidence 3344444444445555555554444432 22334444444444444455555554444444332 344444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 008249 271 YFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~ 290 (572)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 44445555555544444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.011 Score=61.30 Aligned_cols=415 Identities=14% Similarity=0.114 Sum_probs=234.1
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHH--HHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNE--LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELD 205 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 205 (572)
....+++..|++..+.+.+. .|+.. |..++.+ +.+.|+.++|..+++.....++. |..|...+-.+|-..|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34568899999999998876 35544 3334443 56889999999999888776664 8889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC----------
Q 008249 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG---------- 275 (572)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 275 (572)
+|..+|+..... .|+......+..+|.+.+.+.+-.+.--++-+.-+ .+...+=++++.+...-
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p----k~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP----KRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----cccchHHHHHHHHHHhccCCcccccch
Confidence 999999999865 57777778888889998887665555444444333 44444444455444321
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 008249 276 DKFQALALWNDMFQKN-IQTDIVAYNVLINGFCLNGDISSAFAYFC-QMLKRGFLPDVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
-..-|.+.++.+.+.+ -.-+..-...-...+...|++++|.+++. ...+.-..-+...-+.-++.+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1234566666666654 11122222222344556889999999994 333332333445556677888899999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHH----------------HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---Hhc
Q 008249 354 YGVLSKTGVAPDQISYKTIIQGLC----------------IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY---GRC 414 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~----------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~ 414 (572)
-.++...|. |. |...++.+. ..+..+...+..++......+ ++ |-+-+.++ ..-
T Consensus 249 ~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-gp--~LA~lel~kr~~~~ 321 (932)
T KOG2053|consen 249 SSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-GP--YLARLELDKRYKLI 321 (932)
T ss_pred HHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-Cc--HHHHHHHHHHhccc
Confidence 988888763 32 333333222 122333333444443332111 12 22223332 345
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCC-
Q 008249 415 GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVF-------TYNLLIGASCNLGH- 486 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~- 486 (572)
|+.+++...|-+ +.|-.| .|..=+..|...=..+.-..++...... .++.. .+.+.+..-.-.|.
T Consensus 322 gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~ 394 (932)
T KOG2053|consen 322 GDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLY 394 (932)
T ss_pred CChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhcc
Confidence 777776655432 222222 1111111111111222222233222211 11110 01111111111221
Q ss_pred ----HHHHHHHHHHHH---HCC------CCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCh
Q 008249 487 ----IHLALQLYDEML---RRG------ITPDI---------ITYTELIKGHCARGNMK---EAEEVFAKIQTLGLAIDH 541 (572)
Q Consensus 487 ----~~~A~~~~~~m~---~~g------~~p~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~p~~ 541 (572)
-+.-..++.+.. ++| +-|+. .+.+.|+..+.+.++.. +|+-+++.-.... +-|.
T Consensus 395 ~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf 473 (932)
T KOG2053|consen 395 EKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNF 473 (932)
T ss_pred ccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccH
Confidence 122222222221 122 22332 24567888899988866 4555555555541 2244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 542 IPFRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
.+--.+++.|+-.|-+..|.++|+.+
T Consensus 474 ~~KLlLiriY~~lGa~p~a~~~y~tL 499 (932)
T KOG2053|consen 474 QTKLLLIRIYSYLGAFPDAYELYKTL 499 (932)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHhc
Confidence 45557899999999999999999876
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0001 Score=61.57 Aligned_cols=128 Identities=19% Similarity=0.179 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 008249 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPD--VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI--ITYTELI 513 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~ 513 (572)
.|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444445444 36777888777888777532211 223334556777888888888888888876422221 3445577
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 514 KGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
..+...|++++|...++..... ...+..+...++.|.+.|++++|+..|++.+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888888999988888664332 2344566778888888999999998888754
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00017 Score=69.86 Aligned_cols=121 Identities=19% Similarity=0.161 Sum_probs=72.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC
Q 008249 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 238 (572)
|+..+...++++.|..+|+++.+..| + ....++..+...++..+|.+++.+..... +-+...+..-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~p--e--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDP--E--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCC--c--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 33344445666677777777666542 2 22345555656666666666666666542 2244455555566666666
Q ss_pred hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
.+.|.++.+++....| .+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 250 ~~lAL~iAk~av~lsP----~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSP----SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCc----hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666554 556666666666666666666666666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00011 Score=71.03 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 008249 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (572)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (572)
..-..++..+...++++.|.++|+++.+.. |+ ....+++.+...++-.+|.+++.+.++..+ .+........
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p----~d~~LL~~Qa 241 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP----QDSELLNLQA 241 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----CCHHHHHHHH
Confidence 344456667777899999999999998763 44 445577888888889999999999998665 7788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
..+.+.++.+.|+++.+++.... +-+..+|..|..+|.+.|+++.|+..++.+-
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88999999999999999999874 4456699999999999999999998888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00031 Score=58.71 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=9.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 008249 268 MDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
...+...|++++|...|+....
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444444444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.1e-06 Score=49.31 Aligned_cols=33 Identities=33% Similarity=0.624 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD 152 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 152 (572)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.2e-05 Score=48.32 Aligned_cols=33 Identities=55% Similarity=0.967 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRRGITPD 505 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 505 (572)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00015 Score=55.14 Aligned_cols=95 Identities=21% Similarity=0.205 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 008249 475 NLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRM 554 (572)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 554 (572)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344555566666677776666666542 3333555666666666677777777776666642 22334556666666667
Q ss_pred CCHHHHHHHHHHHHhcC
Q 008249 555 KESDKARDIHQKWLLRN 571 (572)
Q Consensus 555 g~~~~A~~~~~~~l~~~ 571 (572)
|++++|...+++.++.+
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 77777777776665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.028 Score=56.58 Aligned_cols=206 Identities=12% Similarity=0.010 Sum_probs=118.7
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhC-CCCC--------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 008249 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEM-RPSP--------NCATYNAFITGYCRVNELDKALHLFSTMANNGIR 220 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 220 (572)
.|.+..|..+...-...-.++.|+..|-+..+. |++. +...-.+ ..-.--|++++|.++|-+|.+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHhhhhhhccchhh--
Confidence 588888888887777777788887777665442 2110 0011111 12223588899998888876542
Q ss_pred CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008249 221 PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYN 300 (572)
Q Consensus 221 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 300 (572)
..+..+.+.|++-...++++.--...... .-..+|+.+...+.....+++|.+.+..-.. ..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~--~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDE--GKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hH
Confidence 23455667777766666654322111101 2346777788888777778877777654331 12
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 008249 301 VLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (572)
Q Consensus 301 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (572)
..+.++.+..++++-..+... ++.+....-.+..++.+.|.-++|.+.+-+. + .| ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHH
Confidence 345555555555554443333 3334555666777777777777776655332 1 12 13345566667
Q ss_pred CHHHHHHHHHH
Q 008249 381 DIVKAREFLLS 391 (572)
Q Consensus 381 ~~~~A~~~~~~ 391 (572)
+|.+|.++-+.
T Consensus 893 QW~~avelaq~ 903 (1189)
T KOG2041|consen 893 QWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHh
Confidence 77777766554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.4e-05 Score=47.64 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVP 151 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 151 (572)
.+|+.+|.++++.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888877766
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.3e-05 Score=46.65 Aligned_cols=32 Identities=47% Similarity=0.759 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRRGITP 504 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 504 (572)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00058 Score=54.79 Aligned_cols=97 Identities=19% Similarity=0.103 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGIR--PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
.+...+.+.|++++|.+.|+.+...... .....+..+..++.+.|++++|...++.+....+ ..+.....+..+..+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-KSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-CCCcccHHHHHHHHH
Confidence 3333444444444444444444332110 0012233344444444444444444444444332 100112333444444
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 008249 271 YFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~ 290 (572)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 44444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00043 Score=55.57 Aligned_cols=99 Identities=12% Similarity=0.005 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIF-P-DVFTYNLLIGASCNLGHIHLALQLYDEMLRRG--ITPDIITYTEL 512 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l 512 (572)
.++..+...+.+.|++++|.+.+..+...... | ....+..+...+.+.|+++.|...|+.+.... .+.....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556667777788888888888888764321 1 13455667777888888888888888877642 11124566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 008249 513 IKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
..++...|+.++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 77788888888888888888776
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0046 Score=56.43 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=51.5
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhH---HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTH---NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
+...+-.....+.+.|++++|...|+.+...- +-+.... -.++.++.+.++++.|...+++..+..|......|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34344445555677788888888888887752 2222222 3456777888888888888888887766544444444
Q ss_pred HHHHHH
Q 008249 194 FITGYC 199 (572)
Q Consensus 194 li~~~~ 199 (572)
.+.+.+
T Consensus 110 Y~~g~~ 115 (243)
T PRK10866 110 YMRGLT 115 (243)
T ss_pred HHHHHh
Confidence 444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00037 Score=67.85 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=100.8
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 361 GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS--VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFT 438 (572)
Q Consensus 361 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 438 (572)
+.+.+......+++.+....+++.+..++.+..... ...-+.|..++++.|...|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345677777788888888888888999888887652 223345567899999999999999999998889999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 439 FNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNL 484 (572)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 484 (572)
+|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999888877777777777777776665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0004 Score=67.60 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=96.1
Q ss_pred CCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVA 298 (572)
Q Consensus 219 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 298 (572)
.+.+...+..+++.+....+++.+..++-+...... ....-..+..++++.|.+.|..+.++++++.=...|+-||..+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~-~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPN-CSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcc-cccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344666777777777777788888888888776532 1112234556888888999999999998888888898999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 008249 299 YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (572)
Q Consensus 299 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (572)
+|.||+.+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888888777666777777767666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00091 Score=54.95 Aligned_cols=95 Identities=9% Similarity=-0.072 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008249 439 FNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA 518 (572)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 518 (572)
.-.+...+...|++++|.++|+-+...... +..-|-.|.-++-..|++++|+..|....... +.|+..+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334444456667777777777776654322 34555566666666777777777777776654 4455666677777777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 008249 519 RGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 519 ~g~~~~A~~~~~~m~~~ 535 (572)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777766654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00057 Score=51.86 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=35.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++......+ .+...+..+...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 80 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP----DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----cchhHHHHHHHHHHH
Confidence 3334444444444444444443321 11223333334444444444444444444443332 222333344444444
Q ss_pred cCCHHHHHHHHHHH
Q 008249 274 NGDKFQALALWNDM 287 (572)
Q Consensus 274 ~g~~~~A~~~~~~~ 287 (572)
.|+.++|...+...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 44444444444333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0063 Score=57.34 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=93.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 008249 409 DGYGRCGDLSNAFSIRDLMLSF---GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNL 484 (572)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 484 (572)
+-..+.|++..|.+.|.+.+.. +..|+...|........+.|+.++|+.--++..+. .|. ...|..-..++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHH
Confidence 3456789999999999988763 33455666777777788889999999888887763 222 22333334455667
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH--H-hcCCHHHH
Q 008249 485 GHIHLALQLYDEMLRRGITP-DIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY--R-RMKESDKA 560 (572)
Q Consensus 485 g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~--~-~~g~~~~A 560 (572)
+++++|.+-|+...+....+ ...++.-...++-+..+.+. ..++.-.......|....|..+.-.+ . ..|.-.+|
T Consensus 335 e~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~ea 413 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEA 413 (486)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHH
Confidence 88999999998887653222 22444444444443333221 22222222222344555665433222 2 35666788
Q ss_pred HHHHHHH
Q 008249 561 RDIHQKW 567 (572)
Q Consensus 561 ~~~~~~~ 567 (572)
...|++.
T Consensus 414 E~kFkev 420 (486)
T KOG0550|consen 414 EAKFKEV 420 (486)
T ss_pred HHHHHHH
Confidence 8777765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.002 Score=53.04 Aligned_cols=94 Identities=10% Similarity=0.002 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008249 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
.-.+...+...|++++|..+|+.+....| .+..-|..|..++-..|++++|+..|.......+ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 33444445555666666666666555544 3445555555555556666666666666555442 245555555556666
Q ss_pred CCChhHHHHHHHHHHh
Q 008249 236 KGLLGDAVKFLGEVLA 251 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~ 251 (572)
.|+.+.|++-|+.++.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.8e-05 Score=55.26 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 008249 484 LGHIHLALQLYDEMLRRGI-TPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKAR 561 (572)
Q Consensus 484 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 561 (572)
.|+++.|+.+++++.+..- .++...+..+..+|.+.|++++|.+++++ .+. .| +......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4678888888888877531 12345555678888888888888888877 322 22 2234445577788888888888
Q ss_pred HHHHHH
Q 008249 562 DIHQKW 567 (572)
Q Consensus 562 ~~~~~~ 567 (572)
+.+++.
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 887763
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.7e-05 Score=44.16 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG 148 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 148 (572)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67777888888888888888887777765
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00064 Score=51.69 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=41.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 407 IIDGYGRCGDLSNAFSIRDLMLSFGV-SSNVFTFNALILAETRGG--------SIFDAFSLKKEMLLDGIFPDVFTYNLL 477 (572)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~l 477 (572)
.|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-+.+.+|++|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 33444444666666666666666666 566666666665554432 123344455555555555555555555
Q ss_pred HHHHH
Q 008249 478 IGASC 482 (572)
Q Consensus 478 i~~~~ 482 (572)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.019 Score=48.12 Aligned_cols=124 Identities=14% Similarity=0.062 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHH
Q 008249 399 PEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDG---IFPDVFTYN 475 (572)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~ 475 (572)
|+...--.|..+....|++.+|...|++...--+.-|....-.+.++....+++..|...++++.+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444445555555555555555555555443333444455555555555555555555555554432 1122 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 476 LLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAE 526 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 526 (572)
.+.+.+...|++.+|..-|+..... -|+...-......+.++|+.+++.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 3444555555555555555555542 344433333333444555444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.7e-05 Score=43.79 Aligned_cols=28 Identities=46% Similarity=0.845 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.015 Score=53.00 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 372 IIQGLCIHGDIVKAREFLLSMLEKS--VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLM 427 (572)
Q Consensus 372 li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 427 (572)
+...|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4445666666666666666666542 2223344555666666666666666655444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0038 Score=53.89 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHH
Q 008249 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPN--RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI 266 (572)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 266 (572)
..+..+...+...|++++|...|++....+..+. ...+..+...+.+.|++++|...+++.+...+ .+...+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~ 111 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP----KQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHHH
Confidence 3455555566666666666666666654332221 24566666666777777777777777766544 45556666
Q ss_pred HHHHHHhcCCHHHHH
Q 008249 267 LMDSYFKNGDKFQAL 281 (572)
Q Consensus 267 l~~~~~~~g~~~~A~ 281 (572)
+...+...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 666666666644433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=55.98 Aligned_cols=80 Identities=13% Similarity=-0.027 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHH
Q 008249 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRP--NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI 266 (572)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 266 (572)
..|..+...+...|++++|...|++.......| ...++..+...+...|+.++|...++..+...+ .....+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~----~~~~~~~~ 111 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP----FLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CcHHHHHH
Confidence 344555555555566666666666655432121 123455555666666666666666666665443 33444444
Q ss_pred HHHHHH
Q 008249 267 LMDSYF 272 (572)
Q Consensus 267 l~~~~~ 272 (572)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0022 Score=62.47 Aligned_cols=88 Identities=11% Similarity=-0.039 Sum_probs=43.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (572)
.+...|++++|...|+++.+.... +...|..+..+|.+.|++++|+..+++++..... +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 344445555555555555544322 3444444455555555555555555555543211 34444444555555555555
Q ss_pred HHHHHHHHHH
Q 008249 490 ALQLYDEMLR 499 (572)
Q Consensus 490 A~~~~~~m~~ 499 (572)
|...|++..+
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0047 Score=62.91 Aligned_cols=146 Identities=11% Similarity=0.037 Sum_probs=96.4
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 008249 395 KSVVPEPHIWNVIIDGYGRC-----GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG--------SIFDAFSLKKE 461 (572)
Q Consensus 395 ~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~ 461 (572)
...+.+...|...+.+.... ++.+.|..+|++..+..+. ....|..+..++.... ++..+.+..+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556778888888775432 2367888888888885432 3455555544443221 12333444444
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008249 462 MLLDG-IFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540 (572)
Q Consensus 462 m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 540 (572)
..... ...+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.++++... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 33321 2234566777766666778899999999988885 468888888888888999999999999888876 565
Q ss_pred hHHHH
Q 008249 541 HIPFR 545 (572)
Q Consensus 541 ~~~~~ 545 (572)
..+|.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 55553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.002 Score=60.33 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 402 HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILA-ETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGA 480 (572)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 480 (572)
.+|..++...-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|.++|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688888888888999999999999986432 233444444444 33356777799999998876 44577888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008249 481 SCNLGHIHLALQLYDEMLRRGITPDI---ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
+...|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++.+. .|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999999875 33333 58999999999999999999999999886 45544444454444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0016 Score=49.55 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=32.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008249 270 SYFKNGDKFQALALWNDMFQKNI-QTDIVAYNVLINGFCLNG--------DISSAFAYFCQMLKRGFLPDVITYNTLLNC 340 (572)
Q Consensus 270 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (572)
.+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|..|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33334555555555555555554 445555555544444332 112334444444444444444444444443
Q ss_pred H
Q 008249 341 L 341 (572)
Q Consensus 341 ~ 341 (572)
+
T Consensus 114 L 114 (120)
T PF08579_consen 114 L 114 (120)
T ss_pred H
Confidence 3
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.076 Score=50.91 Aligned_cols=138 Identities=9% Similarity=-0.021 Sum_probs=89.4
Q ss_pred CCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
.-|.|..+|-.||.-|..+|..++..+++++|..- .+--+.+|..-+.+=...+++...+.+|.+.+.... +...|.
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~ 113 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM 113 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence 34678889999999999999999999999999764 344556777777777777899999999998877543 567777
Q ss_pred HHHHHHHhcCCH------hHHHHHHHHHHH-CCCCCCH-hHHHHHHHHHH---hC------CChhHHHHHHHHHHhCC
Q 008249 193 AFITGYCRVNEL------DKALHLFSTMAN-NGIRPNR-VTHNILVHALC---KK------GLLGDAVKFLGEVLADD 253 (572)
Q Consensus 193 ~li~~~~~~g~~------~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~---~~------g~~~~a~~~~~~~~~~~ 253 (572)
..+..--+.+.. ....+.|+-... .++.|-. ..|+..+..+- .. .+++...+.+.+++...
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP 191 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP 191 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc
Confidence 777655554321 122333443332 3445432 33444433322 22 34555667777777644
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0023 Score=62.28 Aligned_cols=89 Identities=15% Similarity=-0.034 Sum_probs=43.1
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.+...|++++|++.|++.++.. +-+...|..+..++.+.|++++|...+++++...+ .+...|..+..+|...|+
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P----~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP----SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHhCC
Confidence 3334455555555555554432 11344444444555555555555555555555443 344445555555555555
Q ss_pred HHHHHHHHHHHHhC
Q 008249 277 KFQALALWNDMFQK 290 (572)
Q Consensus 277 ~~~A~~~~~~~~~~ 290 (572)
+++|+..|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0002 Score=53.36 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=5.4
Q ss_pred HHHhcCCHhHHHHHH
Q 008249 197 GYCRVNELDKALHLF 211 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~ 211 (572)
++.+.|++++|..++
T Consensus 34 ~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 34 CYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 333333333333333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0057 Score=52.81 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 404 WNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN--VFTFNALILAETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 464 (572)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444455555555555555443322111 23344444444455555555555544444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00041 Score=49.30 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 008249 505 DIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMK-ESDKARDIHQKWLLRNK 572 (572)
Q Consensus 505 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~~ 572 (572)
+..+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777888888888888888888888763 224556777777888888 68888888888877664
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0021 Score=55.23 Aligned_cols=96 Identities=17% Similarity=0.016 Sum_probs=58.9
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 223 RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL 302 (572)
Q Consensus 223 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 302 (572)
...+..+...+...|++++|...|++.+...+ .......++..+...+...|++++|++.+++..... +....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34556666667777888888888887776543 111234567777777778888888888877777653 3334445555
Q ss_pred HHHHH-------hCCCHHHHHHHHH
Q 008249 303 INGFC-------LNGDISSAFAYFC 320 (572)
Q Consensus 303 i~~~~-------~~g~~~~a~~~~~ 320 (572)
...+. ..|+++.|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 55554 4555554444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.08 Score=50.26 Aligned_cols=278 Identities=12% Similarity=-0.019 Sum_probs=131.0
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 122 VAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 122 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
.-..+.+.+..++..|+..+...++.+ +.+...|..-...+...|++++|.--.+.-.+..+. ....+.-.-.++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhh
Confidence 334455667778888888888888764 334555555566666667777766555444443221 111222223333333
Q ss_pred CCHhHHHHHHHH---------------HHHCCC-CCCHhHHHHHH-HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHH
Q 008249 202 NELDKALHLFST---------------MANNGI-RPNRVTHNILV-HALCKKGLLGDAVKFLGEVLADDDGKATSDVITS 264 (572)
Q Consensus 202 g~~~~A~~~~~~---------------m~~~g~-~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 264 (572)
++..+|.+.++. ...... +|...++..+- .++.-.|+.++|.++--.+++.+. .+....
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~----~n~~al 206 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA----TNAEAL 206 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc----chhHHH
Confidence 344444433331 111100 12222222221 233344555555555555444332 222222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 008249 265 TILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (572)
Q Consensus 265 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (572)
-.-..++.-.++.+.|...|++.+..+ |+... .+..-.-.+.++.+..+ .+-..+.
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~----------sk~~~~~~k~le~~k~~------------gN~~fk~ 262 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLD--PDHQK----------SKSASMMPKKLEVKKER------------GNDAFKN 262 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccC--hhhhh----------HHhHhhhHHHHHHHHhh------------hhhHhhc
Confidence 222223333444555555555444332 22111 01111111111222222 1234567
Q ss_pred CCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 345 GKLDEASHFYGVLSKTG---VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAF 421 (572)
Q Consensus 345 g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 421 (572)
|.+..|.+.|.+.+... ..++...|........+.|+..+|+.--+...+.+.. -...|..-..++...+++++|.
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766532 3344455555555666777777777777666654211 1112233334455566777777
Q ss_pred HHHHHHHhC
Q 008249 422 SIRDLMLSF 430 (572)
Q Consensus 422 ~~~~~~~~~ 430 (572)
+-++...+.
T Consensus 342 ~d~~~a~q~ 350 (486)
T KOG0550|consen 342 EDYEKAMQL 350 (486)
T ss_pred HHHHHHHhh
Confidence 777666553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0054 Score=48.63 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=54.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPN--RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.....+ ..+.+......+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHH
Confidence 34455566777777777777766665443 23455566666677777777777777666543 1111333333344455
Q ss_pred HhcCCHHHHHHHHHHHH
Q 008249 272 FKNGDKFQALALWNDMF 288 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~ 288 (572)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666665544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0019 Score=60.49 Aligned_cols=83 Identities=10% Similarity=-0.007 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCc-cHHHHHHHHHHHHhcCCHHHHHH
Q 008249 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATS-DVITSTILMDSYFKNGDKFQALA 282 (572)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 282 (572)
.+.|.++|+...+. +..+...|...++.+.+.|+.+.|..+|+..+..-... . ....|...+..-.+.|+.+.+.+
T Consensus 52 ~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~--~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 52 PKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKE--KQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH--HHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33344444444432 22333344444444444444444444444444332100 1 12344444444444444444444
Q ss_pred HHHHHHh
Q 008249 283 LWNDMFQ 289 (572)
Q Consensus 283 ~~~~~~~ 289 (572)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.011 Score=52.50 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
.+-.....+.+.|++.+|...|+.+...- -+--..+...++.++.+.|+++.|...++++.+..|......+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 34445566778888999998888888752 1122345566778888888888888888888776654333333333333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.021 Score=53.76 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=39.5
Q ss_pred HHHhC-CCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHh-hHHH
Q 008249 305 GFCLN-GDISSAFAYFCQMLKR----GFLPD--VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP-----DQI-SYKT 371 (572)
Q Consensus 305 ~~~~~-g~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~-~~~~ 371 (572)
.|... |++++|++.|.+..+. | .+. ...+..+...+.+.|++++|.++|+++....... +.. .+-.
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5666666666655432 1 111 2234445555666666666666666655432111 111 1112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 372 IIQGLCIHGDIVKAREFLLSMLEK 395 (572)
Q Consensus 372 li~~~~~~g~~~~A~~~~~~~~~~ 395 (572)
.+-++...||...|.+.+++....
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 222333455555565555555543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.15 Score=51.71 Aligned_cols=203 Identities=10% Similarity=0.020 Sum_probs=127.9
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHH----------HHHcCChhHHHHHHHHHhhCCC
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNE----------LCKIGDLEKADHVIREMSEMRP 184 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~----------~~~~g~~~~A~~~~~~~~~~~~ 184 (572)
.|-+..|..|...-.+.-.++-|...|-+.... +.......|-.. -.--|++++|++++-++.+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 466778988888777777888888887665443 222211111111 122488999999888775533
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHH
Q 008249 185 SPNCATYNAFITGYCRVNELDKALHLFSTMANNGI--RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVI 262 (572)
Q Consensus 185 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 262 (572)
..|..+.+.|++-...++++.--. +. ..-...++.+...+.....+++|.+.+.....
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------- 824 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------- 824 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 345667788888887777654211 11 11135688888888888888888888865422
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 008249 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLC 342 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (572)
....+.++.+..++++...+-..+ +.+....-.+...+...|.-++|.+.|-+. +. | ...+..|.
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv 889 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCV 889 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHH
Confidence 123566677766666665555544 345556667778888888888888766432 21 2 13455667
Q ss_pred HcCCHHHHHHHHHH
Q 008249 343 KQGKLDEASHFYGV 356 (572)
Q Consensus 343 ~~g~~~~A~~~~~~ 356 (572)
..+++.+|.++-+.
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.04 Score=46.24 Aligned_cols=103 Identities=8% Similarity=0.037 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH
Q 008249 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (572)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (572)
|++.--..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++.+.+..+.. .++.+.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~--r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF--RSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc--CCCCchH
Confidence 44444555556666666666666666665542234455555555555556666666666666655544333 2223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 266 ILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 266 ~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+.+.+...|...+|...|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 4445555555555555555555544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0018 Score=58.44 Aligned_cols=97 Identities=21% Similarity=0.171 Sum_probs=72.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 008249 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIH 488 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 488 (572)
-..+.+++.+|+..|.+.++..+. |.+-|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 355677888888888888876443 6777777778888888888888877777763 444 567888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 008249 489 LALQLYDEMLRRGITPDIITYTE 511 (572)
Q Consensus 489 ~A~~~~~~m~~~g~~p~~~~~~~ 511 (572)
+|++.|++.++ +.|+..+|-.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHH
Confidence 88888888776 5677666644
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.01 Score=60.42 Aligned_cols=144 Identities=14% Similarity=0.041 Sum_probs=96.7
Q ss_pred CCCCCHhhHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHH
Q 008249 361 GVAPDQISYKTIIQGLCIHG-----DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCG--------DLSNAFSIRDLM 427 (572)
Q Consensus 361 ~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~ 427 (572)
+.+.+...|..++.+..... +...|..+|++..+..+. ....|..+..++.... +...+.+..+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34567788888888765422 367888889988887654 4555555544443321 123333344433
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008249 428 LSF-GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI 506 (572)
Q Consensus 428 ~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 506 (572)
... ....+...|..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+++..+. .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 332 123345677777666667789999999999988854 67888888888899999999999999888774 5665
Q ss_pred HHH
Q 008249 507 ITY 509 (572)
Q Consensus 507 ~~~ 509 (572)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00078 Score=47.17 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=25.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 479 GASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
..+...|++++|...|+++++.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555554432 22334444455555555555555555555444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0028 Score=54.66 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 008249 400 EPHIWNVIIDGYGR-----CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG----------------GSIFDAFSL 458 (572)
Q Consensus 400 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----------------g~~~~a~~~ 458 (572)
+..+|..+++.|.+ .|..+-....++.|.+.|+.-|..+|+.|++.+-+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444432 345555555556666666666666666666554431 123445556
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008249 459 KKEMLLDGIFPDVFTYNLLIGASCNLG 485 (572)
Q Consensus 459 ~~~m~~~~~~p~~~~~~~li~~~~~~g 485 (572)
+++|...|+-||..++..|++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 666666666666666666655554433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.013 Score=53.41 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=81.5
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC---CChhHHHHHHHHHHhCC
Q 008249 177 REMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK---GLLGDAVKFLGEVLADD 253 (572)
Q Consensus 177 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 253 (572)
+.-...+| -|...|-.|..+|...|+++.|...|.+..+.. .+++..+..+..++... ....++..+|++++..+
T Consensus 146 e~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 146 ETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 44445555 477888888888888888888888888887753 34566666666555433 23567888888888877
Q ss_pred CCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 254 DGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
+ .++.+...|...+...|++.+|...|+.|.+..
T Consensus 224 ~----~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 224 P----ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred C----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6 788888888888888888888888888888764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.012 Score=51.96 Aligned_cols=134 Identities=10% Similarity=0.071 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC---CCccHHHHHH
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK---ATSDVITSTI 266 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~ 266 (572)
.-+.++..+.-.|.+.-...++.+..+...+.++.....|.+.-.+.|+.+.|...|+...+... . ...+..+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 34566666667777777777777777765555666777777777778888888887775554321 1 0123333344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 267 LMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 267 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
....|.-.+++.+|...+.++...+ +.++..-|.-.-+..-.|+..+|++.++.|+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666777777877787777665 445555555444455567788888888888776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0037 Score=56.54 Aligned_cols=86 Identities=19% Similarity=0.123 Sum_probs=48.1
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHH
Q 008249 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (572)
+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+..+..++ ....+|..|..+|...|++++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp----~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP----HYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHccCcHHH
Confidence 4555556666665555532 22444455555556666666666665555555544 455556666666666666666
Q ss_pred HHHHHHHHHhC
Q 008249 280 ALALWNDMFQK 290 (572)
Q Consensus 280 A~~~~~~~~~~ 290 (572)
|++.|++.++.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 66665555544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.009 Score=47.36 Aligned_cols=91 Identities=26% Similarity=0.193 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 008249 442 LILAETRGGSIFDAFSLKKEMLLDGIFPD--VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPD----IITYTELIKG 515 (572)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~ 515 (572)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++.... .|+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 34456667777888888887777765544 334555666777777888888777777654 132 2222333445
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008249 516 HCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 516 ~~~~g~~~~A~~~~~~m~~ 534 (572)
+...|+.++|++.+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6677777777777766554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0036 Score=54.04 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=61.3
Q ss_pred ccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhH
Q 008249 259 SDVITSTILMDSYFK-----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVIT 333 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 333 (572)
.+..+|..+++.|.+ .|.++-....+..|.+-|+..|..+|+.|++.+=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 455566666666554 46777777778888888888888888888777654 2211 110 0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 008249 334 YNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGD 381 (572)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 381 (572)
+..+..-| -.+.+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 108 fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111101 11234566777777777777777777777777655543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.12 Score=46.27 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
.|+. +..-.+.|++++|...|+.+..+. -+-...+...++-++-+.++++.|+..+++.....|......|...|.+
T Consensus 37 LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3444 444678899999999999998762 1223455666777888999999999999999887776555567777777
Q ss_pred HHh
Q 008249 198 YCR 200 (572)
Q Consensus 198 ~~~ 200 (572)
++.
T Consensus 116 Ls~ 118 (254)
T COG4105 116 LSY 118 (254)
T ss_pred HHH
Confidence 664
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.033 Score=52.41 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQK----GTVPD-VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.|....+.|-..|++++|...|....+. +-+.. ...|......|.+ +++++|.+ .|...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~---------------~~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIE---------------CYEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHH---------------HHHHH
Confidence 4666666777777777777777665432 10000 0111111111111 13333322 33334
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC-CChhHHHHHHHHHHhCCCC--CCCccHHHHHHHHHHH
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK-GLLGDAVKFLGEVLADDDG--KATSDVITSTILMDSY 271 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 271 (572)
+..|...|++..|-+.+..+ ...|-.. |++++|.+.|+++...... ....-..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 44555566655555544443 3345455 6777777777766542110 1001234555666667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 272 FKNGDKFQALALWNDMFQKNIQT-----DIV-AYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
.+.|++++|.++|++........ +.. .+-..+-++...|++..|.+.+++....
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777666542111 111 1222233445566666666666666543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=46.90 Aligned_cols=63 Identities=21% Similarity=0.282 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 008249 482 CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 547 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 547 (572)
...|++++|+++|+++.... +-+...+..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 35677777777777777652 446666677777777777777777777777765 4554444433
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0055 Score=56.37 Aligned_cols=104 Identities=12% Similarity=-0.027 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD--VFTYNLLIGASCNLGHIHLALQLYDEMLRRG--ITPDIITYTEL 512 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l 512 (572)
..|...+..+.+.|++++|...|+.+.+.-+... ...+-.+...|...|++++|...|+.+.+.- -+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555544566778888888888777532211 2456677777777888888888888877641 11123445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008249 513 IKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
+..+...|+.++|.++|+++.+. .|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 66677778888888888877775 45544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.017 Score=52.72 Aligned_cols=116 Identities=16% Similarity=0.030 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 008249 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG---HIHLALQL 493 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~ 493 (572)
.+....-++.-...++. |...|-.|..+|...|+.+.|..-|....+.. .+|...+..+..++.... .-.++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44444445544444443 77888888888888888888888888887752 235666666666655432 35678888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 494 YDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 494 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
|+++.... +-|+.+...|...+...|++.+|...|+.|.+.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 88888763 556677777778888888888888888888886
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=46.94 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=27.2
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 235 KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
+.|++++|.++|+++....+ .+...+..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP----DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT----TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555555555555555443 44555555555555555555555555555544
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.048 Score=48.44 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=22.6
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
+...|++++|.+.|+.+....+ ..+......-.++.++.+.|+++.|...+++..+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444333 1112233333444444444444444444444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.19 Score=47.50 Aligned_cols=121 Identities=16% Similarity=0.116 Sum_probs=71.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 008249 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLD-GIFPD-VFTYNLLIGASCNL 484 (572)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~ 484 (572)
-..++.+.|+..++-.+++.+-+..+.|+. +. +..+.+.|+ .+..-+++.... .++|| ....-.+..+-...
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 345667777777777777777665544442 11 111233333 333333332211 23444 45555666777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 008249 485 GHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR-GNMKEAEEVFAKIQTL 535 (572)
Q Consensus 485 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 535 (572)
|++..|..--+...+ ..|....|..|.+.-... |+-.++...+.+..+.
T Consensus 343 ~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 343 GEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888777776666655 367777777777765544 8888888888777764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0019 Score=45.18 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=31.0
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
..+.+.|++++|.+.|+++++..+ .+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP----DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555666666665555443 45555555555555555555555555555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0066 Score=57.08 Aligned_cols=284 Identities=16% Similarity=0.092 Sum_probs=141.8
Q ss_pred HHHHhCCChhhHHHHHHHHHhCCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHhh----CCCC-CCHHHHHHHHHH
Q 008249 126 RDLCLGGKIGTALWLRRKMIQKGTVP---DVLTHNYLVNELCKIGDLEKADHVIREMSE----MRPS-PNCATYNAFITG 197 (572)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~ 197 (572)
.-+|+.|+....+.+|+..++.|... =..+|..|.++|.-.+++++|++....=.. .|-+ -...+...|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 34788888888888888888876321 123455666777777777777654322100 0000 011122223333
Q ss_pred HHhcCCHhHHHHHHHHH----HHCCC-CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008249 198 YCRVNELDKALHLFSTM----ANNGI-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m----~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
+--.|.+++|+-...+- .+.|- ......+-.+...|...|+.-....- .+.+ . .+..+-.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g--~--f~~ev~~------- 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKG--A--FNAEVTS------- 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcc--c--ccHHHHH-------
Confidence 44455566555443322 11110 11223333444444444431100000 0000 0 0000000
Q ss_pred hcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----HCCCC-CCHhHHHHHHHHHH
Q 008249 273 KNGDKFQALALWNDMF----QKNI-QTDIVAYNVLINGFCLNGDISSAFAYFCQML----KRGFL-PDVITYNTLLNCLC 342 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~-p~~~~~~~ll~~~~ 342 (572)
.++.|.+.|.+=. +.|- -.--..|..|.+.|.-.|+++.|+...+.-. +-|-. .....+..+.+++.
T Consensus 170 ---al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 170 ---ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 1122222222211 1110 0122355666666677778888776654322 22211 22445667777788
Q ss_pred HcCCHHHHHHHHHHHH----hCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHH
Q 008249 343 KQGKLDEASHFYGVLS----KTG-VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK----S-VVPEPHIWNVIIDGYG 412 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~----~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~ 412 (572)
-.|+++.|.+.|+... +.| -........+|.+.|.-..++++|+.++.+-+.. + ..-....+-+|..+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888877776542 222 1234456677777777777888888777653321 1 1113456677788888
Q ss_pred hcCCHHHHHHHHHHH
Q 008249 413 RCGDLSNAFSIRDLM 427 (572)
Q Consensus 413 ~~g~~~~A~~~~~~~ 427 (572)
..|..++|....+.-
T Consensus 327 alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 327 ALGEHRKALYFAELH 341 (639)
T ss_pred hhhhHHHHHHHHHHH
Confidence 888888877766554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.011 Score=55.55 Aligned_cols=131 Identities=16% Similarity=0.035 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHH
Q 008249 404 WNVIIDGYGRCGDLSNAFSIRDLM----LSFGVS-SNVFTFNALILAETRGGSIFDAFSLKKEMLLD----G-IFPDVFT 473 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~ 473 (572)
|..|.+.|.-.|+++.|+...+.- .+.|-. .....+..+..++.-.|+++.|.+.|+..... | -.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 445555555566666666544321 222211 12345566666666667777777666654321 1 1112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 474 YNLLIGASCNLGHIHLALQLYDEMLR----R-GITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
..+|.+.|.-..++++|+.++++-.. . ...-....+.+|..+|...|..++|+.+.+.-.+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44566666666667777766655332 1 1122345666777777777777777766655443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0037 Score=44.28 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 008249 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG-DKFQALALWNDMF 288 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 288 (572)
.+|..+...+...|++++|+..|++.++..+ .+...|..+..+|...| ++++|++.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p----~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP----NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST----THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444445555555555555555555555443 44455555555555555 4555555555444
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.019 Score=52.85 Aligned_cols=98 Identities=20% Similarity=0.213 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNR----VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (572)
.|...+..+.+.|++++|...|+.+.+.. |+. ..+..+...|...|++++|...|+.+++..+ ..+.....+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHH
Confidence 34444444445566666666666666542 222 3455555666666666666666666665544 2223344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 266 ILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 266 ~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.++..+...|+.++|.+.|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555555666666666666666554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.24 Score=44.16 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI- 303 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li- 303 (572)
..+.++.++.-.|.+.-...++.++++..+ . .++.....|++.-.+.||.+.|...|+...+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~-e--~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYP-E--QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCC-c--ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 344555666666666666777777766543 2 566666777777777777777777777655543333333333332
Q ss_pred ----HHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 304 ----NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 304 ----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
..|.-++++.+|...+.++.... +-|+...|.-.-+..-.|+..+|.+.++.|...
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23444566666776666666542 223444444444445566677777777777664
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.028 Score=46.94 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHhH
Q 008249 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK-----RGFLPDVIT 333 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 333 (572)
+...++..+...|++++|.+..+.+.... +.+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44555666666777777777777776665 55666777777777777777777777766543 366666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.45 Score=45.92 Aligned_cols=419 Identities=13% Similarity=0.085 Sum_probs=232.5
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008249 136 TALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMA 215 (572)
Q Consensus 136 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (572)
+-+++-+++.+. |.|..+|-.|+.-|..+|.+++..+++++|..-.| --..+|...+++-...+++.....+|.+-+
T Consensus 27 D~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp-~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 27 DELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP-IMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred hHHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc-cccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 344666666665 66889999999999999999999999999976333 234678888888888899999999999998
Q ss_pred HCCCCCCHhHHHHHHHHHHhCCCh------hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH---hcCC------HHHH
Q 008249 216 NNGIRPNRVTHNILVHALCKKGLL------GDAVKFLGEVLADDDGKATSDVITSTILMDSYF---KNGD------KFQA 280 (572)
Q Consensus 216 ~~g~~p~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~------~~~A 280 (572)
...+. ...|...+.--.+.+.. ....+.|+-.+.--. ..+.....|+..+..+- ..|. .+..
T Consensus 104 ~k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~-~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 104 KKSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAI-FEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred hhhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhccc-ccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 76444 55555555443333211 112233333333111 11133444555444322 2233 4445
Q ss_pred HHHHHHHHhCCCCC------CHHHHHHHHHHHHh---CC----CHHHHHHHHHHHHH--CCCC----CCHhHHHHH----
Q 008249 281 LALWNDMFQKNIQT------DIVAYNVLINGFCL---NG----DISSAFAYFCQMLK--RGFL----PDVITYNTL---- 337 (572)
Q Consensus 281 ~~~~~~~~~~~~~~------~~~~~~~li~~~~~---~g----~~~~a~~~~~~m~~--~g~~----p~~~~~~~l---- 337 (572)
.+.+.++..-.+.- |-..|..=++.... .| -+-.|.+.++++.. .|+. .+..+++.+
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s 260 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS 260 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence 55565555431110 11111111111100 01 12345555555432 2322 122233221
Q ss_pred -------HHHHHHc-----CC-H-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 338 -------LNCLCKQ-----GK-L-DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHI 403 (572)
Q Consensus 338 -------l~~~~~~-----g~-~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 403 (572)
|+-=... |+ . ....-++++.... +.-....|--.-..+...++-+.|++......+- .|+ .
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L 335 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--L 335 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--h
Confidence 1110000 01 0 1111122222221 2223334444444455667777777766554332 122 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH-------hC-------CC---------------CCCHHHHHHHHHHHHhcCCHHH
Q 008249 404 WNVIIDGYGRCGDLSNAFSIRDLML-------SF-------GV---------------SSNVFTFNALILAETRGGSIFD 454 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~-------~~---------------~p~~~~~~~ll~~~~~~g~~~~ 454 (572)
-..+...|.-..+.+.....|+... +. +. ..-...|...+..-.+...++.
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~a 415 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEA 415 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHH
Confidence 1111112222222222221111110 00 00 0123456667777777788999
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHH
Q 008249 455 AFSLKKEMLLDG-IFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITY-TELIKGHCARGNMKEAEEVFAKI 532 (572)
Q Consensus 455 a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m 532 (572)
|..+|-++.+.+ +.++...+++++..++ .|++..|..+|+--..+ -||...| +-.+..+.+-++-+.|..+|+..
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 999999999888 6788888999888776 58889999999876554 3555444 56777788899999999999977
Q ss_pred HHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 533 QTLGLAID--HIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 533 ~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
... +..+ ..+|..+++-=..-|+...+..+=+++.+
T Consensus 493 v~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 493 VER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 764 3334 56799999988899999999888777754
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.46 Score=45.94 Aligned_cols=393 Identities=14% Similarity=0.112 Sum_probs=204.7
Q ss_pred HHHHHHHH--HhCCChhhHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCC
Q 008249 121 HVAVIRDL--CLGGKIGTALWLRRKMIQK--GTVP------------DVLTHNYLVNELCKIGDLEKADHVIREMSEMRP 184 (572)
Q Consensus 121 ~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 184 (572)
|-.|..++ .+.+++++|.+.+...... +..| |-..-+..++.+.+.|++.+++.+++++...-.
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 55555443 5678999999888877655 3222 112224567788899999999988888766443
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH---CCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 008249 185 ----SPNCATYNAFITGYCRVNELDKALHLFSTMAN---NGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKA 257 (572)
Q Consensus 185 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 257 (572)
..+..+|+.++-.+++. .|-++++ ..+-|+ |--++-.|.+.=..-++.. +++. .
T Consensus 160 krE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~-Y~k~------~- 220 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRP-YEKF------I- 220 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhch-HHhh------C-
Confidence 37888999877777654 2333322 112222 2233333432211111100 0000 0
Q ss_pred CccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC----CC
Q 008249 258 TSDVITSTILMDSYFKNG--DKFQALALWNDMFQKNIQTDI-VAYNVLINGFCLNGDISSAFAYFCQMLKRGFL----PD 330 (572)
Q Consensus 258 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~ 330 (572)
|.......++....-.. +..--.++++.....-+.|+- -....+...+.. +.+++..+-+.+....+. -=
T Consensus 221 -peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~l 297 (549)
T PF07079_consen 221 -PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEEL 297 (549)
T ss_pred -cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHH
Confidence 22223333333222211 111112222222222233432 222333333333 444444444443332111 12
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH-------HHHHHHH----cCCHHHHHHHHHHHHhCCCCC
Q 008249 331 VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKT-------IIQGLCI----HGDIVKAREFLLSMLEKSVVP 399 (572)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~~----~g~~~~A~~~~~~~~~~~~~~ 399 (572)
..++..++....+.++...|.+.+..+... .|+...-.. +.+..+. .-+..+-+.+++.....++.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD- 374 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID- 374 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-
Confidence 456778888888889999998888877663 344332222 2222221 11223334455555544332
Q ss_pred CHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhc---CCHHHHHHHHHHHHhCCCC
Q 008249 400 EPHIWNVIID---GYGRCGD-LSNAFSIRDLMLSFGVSSNVFTFNALI----LAETRG---GSIFDAFSLKKEMLLDGIF 468 (572)
Q Consensus 400 ~~~~~~~li~---~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll----~~~~~~---g~~~~a~~~~~~m~~~~~~ 468 (572)
.......|+. -+-+.|. -++|..+++.+.+... -|...-|.+. ..|..+ ..+.+-..+-.-+.+.|+.
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 1122222222 2333444 7888999888877422 2333333222 233322 2344444444445566777
Q ss_pred CC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008249 469 PD----VFTYNLLIGA--SCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 469 p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
|- ...-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|.+++..+ +|+..
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~ 526 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNER 526 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchh
Confidence 64 3344555544 4568999988766555555 6899999999999999999999999988764 55665
Q ss_pred HHHH
Q 008249 543 PFRI 546 (572)
Q Consensus 543 ~~~~ 546 (572)
++++
T Consensus 527 ~~ds 530 (549)
T PF07079_consen 527 MRDS 530 (549)
T ss_pred hHHH
Confidence 5553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.4 Score=46.11 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=54.7
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCC---CCCChhhHHHHHHHHHH---cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 124 VIRDLCLGGKIGTALWLRRKMIQKG---TVPDVLTHNYLVNELCK---IGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
++-+|....+++..+++.+.+.... +..+...-....-++-+ .|+.++|++++..+......++..+|..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3335777777888888888777651 11122222334445555 67778888887775555555677777766665
Q ss_pred HHh---------cCCHhHHHHHHHHHHH
Q 008249 198 YCR---------VNELDKALHLFSTMAN 216 (572)
Q Consensus 198 ~~~---------~g~~~~A~~~~~~m~~ 216 (572)
|-. ....++|...|.+.-+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 543 1134556666655443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0034 Score=45.83 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 507 ITYTELIKGHCARGNMKEAEEVFAKIQTL----GLA-ID-HIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
.+|+.+...|...|++++|+..+++..+. |-. |+ ..++..++..+...|++++|.+++++.++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46677777888888888888888777643 211 12 345677777888888888888888887653
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.049 Score=45.19 Aligned_cols=88 Identities=10% Similarity=-0.039 Sum_probs=57.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 446 ETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEA 525 (572)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 525 (572)
+...|++++|..+|+-+...+.. |..-|..|..++-..+++++|+..|......+ .-|+..+.....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 44567777777777776654332 44445566666666777777777777766543 34445555667777777777777
Q ss_pred HHHHHHHHHc
Q 008249 526 EEVFAKIQTL 535 (572)
Q Consensus 526 ~~~~~~m~~~ 535 (572)
+..|+.....
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 7777777663
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.39 Score=48.36 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=51.7
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
+-...+.+-+..|..+|.+++|.++-- .|+ ...-|..|...-...=+++-|.+.+.++..
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iac----lgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRd-------------- 613 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIAC----LGV--TDTDWRELAMEALEALDFETARKAYIRVRD-------------- 613 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccc----cce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhc--------------
Confidence 333445555566777777777765422 121 222344444333333344444444444322
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHH
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGE 248 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 248 (572)
-.+-+...-++++++.|-.|+... +...++-.|++.+|.++|.+
T Consensus 614 ------l~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 614 ------LRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ------cHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 112233334566677776666653 33445556777777777644
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.011 Score=42.37 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=39.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 479 GASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
..|.+.+++++|.++++++...+ |.+...|.....++...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777653 445566667777777777777777777777765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0064 Score=43.65 Aligned_cols=59 Identities=14% Similarity=0.023 Sum_probs=50.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 513 IKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
...|.+.+++++|.++++++...+ +.+...|......+.+.|++++|.+.|+++++.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 457889999999999999999973 33666788899999999999999999999987653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.70 E-value=1 Score=47.11 Aligned_cols=181 Identities=13% Similarity=0.113 Sum_probs=118.9
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh--hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV--LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
.....-+..+++...+..|+.+...- +..++. .......+-+.+.|++++|..-+-+-... .+|. .+|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 34567888899999999999886542 222222 23344556667889999998877665432 1222 3566
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
-|....+..+--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|... -| ....+..+.+.+-
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd---~e~al~Ilr~sny 478 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FD---VETALEILRKSNY 478 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--ee---HHHHHHHHHHhCh
Confidence 677777788888889999998876 66666789999999999998887776654 22101 12 2344555666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
.++|..+-.+... +......+ +-..+++++|++++..+.
T Consensus 479 l~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 479 LDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 6666655544432 33333333 345688999999887653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.44 Score=48.05 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhHH-----HHHHHHHHcCCHHHHHH
Q 008249 314 SAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD-QISYK-----TIIQGLCIHGDIVKARE 387 (572)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~ 387 (572)
+...-+++++++|-.|+... +...++-.|++.+|.++|.+- |.... ...|+ -..+-+...|..++-..
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKm 691 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKM 691 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHH
Confidence 34444567777777777643 334556677777777777543 21100 00111 01122223333333222
Q ss_pred HHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 388 FLLSMLE--KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRD------LMLSFGV---SSNVFTFNALILAETRGGSIFDAF 456 (572)
Q Consensus 388 ~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~~~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~ 456 (572)
+.++--+ .+++- -.+....+...|+.++|..+.- .+.+-+- ..+..+...+...+.+...+.-|-
T Consensus 692 L~RKRA~WAr~~ke----PkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 692 LIRKRADWARNIKE----PKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHHhhhcCC----cHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 2222111 11110 1223344555666666655421 1111111 113334444444444455555666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 457 SLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAK 531 (572)
Q Consensus 457 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (572)
++|..|-+. ..+++.....+++++|..+-++..+ +.||+ |.....-++...++++|.+.|.+
T Consensus 768 eIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dV--y~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 768 EIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDV--YMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred HHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccc--cchHHHHhhhhhhHHHHHHHHHH
Confidence 666555421 2455556666677777666655544 23333 23333444445555555544443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.5 Score=45.53 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 404 WNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
+.+++.++.-.|++++|.+..+.|.+
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 34444444444455555554444444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.029 Score=46.84 Aligned_cols=71 Identities=24% Similarity=0.266 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChHHH
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT-----LGLAIDHIPF 544 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 544 (572)
....++..+...|++++|..+.+.+.... |.|...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456666677788888888888877753 55667778888888888888888888777643 4777776653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.1 Score=43.31 Aligned_cols=86 Identities=10% Similarity=-0.093 Sum_probs=35.0
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKA 207 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 207 (572)
+.+.|++++|..+|.-+...+ +-+..-|..|..++-..+++++|...+......++ -|...+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 344444444444444444332 11233333344444444444444444444333222 1222233334444444444444
Q ss_pred HHHHHHHH
Q 008249 208 LHLFSTMA 215 (572)
Q Consensus 208 ~~~~~~m~ 215 (572)
...|+...
T Consensus 125 ~~~f~~a~ 132 (165)
T PRK15331 125 RQCFELVN 132 (165)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.1 Score=42.78 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482 (572)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 482 (572)
+.+.-+.-+...|+...|..+..+. .+ |+..-|...+.+++..++|++-.++... +-.+.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444556666778877777775544 23 6788888888888888888877665432 123467778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAK 531 (572)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (572)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888877662 1 24566677788888887765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.1 Score=42.70 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG 449 (572)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 449 (572)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-...... . -++..|-..+.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 333444455566555555544331 24666666666666666666655544321 1 1235566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQL 493 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 493 (572)
|...+|..+...+ . +..-+..|.++|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 6666666665541 1 13344556666666666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.9 Score=40.83 Aligned_cols=223 Identities=20% Similarity=0.075 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 008249 310 GDISSAFAYFCQMLKRGFL-PDVITYNTLLNCLCKQGKLDEASHFYGVLSKT-GVAPDQISYKTIIQGLCIHGDIVKARE 387 (572)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (572)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555443221 12445555566666666677666666665542 123344555555556666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 388 FLLSMLEKSVVPEPHIWNVIID-GYGRCGDLSNAFSIRDLMLSFGV--SSNVFTFNALILAETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 464 (572)
.+.........+ ......... .+...|+++.|...++....... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666544332 111222222 55666666666666666644211 01222333333334455666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 465 DGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.........+..+...+...++++.|...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 321112445555555555666666666666666553 222 333333444444445566666666555554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.12 E-value=2.1 Score=44.36 Aligned_cols=347 Identities=11% Similarity=0.029 Sum_probs=181.3
Q ss_pred hCCCCCChhhHH-----HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH--hHHHHHHHHHHHCC
Q 008249 146 QKGTVPDVLTHN-----YLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL--DKALHLFSTMANNG 218 (572)
Q Consensus 146 ~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g 218 (572)
..|++.+..-|. .+++.+...+.+..|+++-..+...-... ...|.....-+.+..+. +++++..++=....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 446666666554 46778888899999998888775422211 45566666666665321 23333333322222
Q ss_pred CCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKAT--SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI 296 (572)
Q Consensus 219 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 296 (572)
. .....|..+.+.....|+.+-|..+++.=...+. .++ .+..-+..-+.-..+.|+.+-...++-.+... .+.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~-qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGE-QVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccc-hhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 2 3455678888878888999999888764322211 000 01111222222333334444333333333321 011
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH--HHHhC-CCCCCHhhHHHHH
Q 008249 297 VAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYG--VLSKT-GVAPDQISYKTII 373 (572)
Q Consensus 297 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~--~~~~~-~~~~~~~~~~~li 373 (572)
..+.. -..+...|..+|.+..+.. |..+ +-+.| +.++-.++..-|. ..... .+.+-........
T Consensus 579 s~l~~------~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a 645 (829)
T KOG2280|consen 579 SSLFM------TLRNQPLALSLYRQFMRHQ---DRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAA 645 (829)
T ss_pred HHHHH------HHHhchhhhHHHHHHHHhh---chhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHH
Confidence 11111 1123344556666555421 1111 11122 2222222222111 10000 0111122223333
Q ss_pred HHHHHcCCHHH----------HHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 374 QGLCIHGDIVK----------AREFLLSMLE-KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442 (572)
Q Consensus 374 ~~~~~~g~~~~----------A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 442 (572)
..+.+.....- -+++.+.+.. .+......+.+--+.-+...|+..+|.++-.+.+- ||...|-.-
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk 721 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLK 721 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHH
Confidence 44444333111 1122222221 12222333455556667778888888888776543 788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 443 ILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNM 522 (572)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 522 (572)
+.+++..+++++-+++-+.+. .+.-|...+.+|.+.|+.++|.+++-+... .. -...+|.+.|++
T Consensus 722 ~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDV 786 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccH
Confidence 899999999988777665543 245567788889999999999988766532 11 567788888888
Q ss_pred HHHHHHHH
Q 008249 523 KEAEEVFA 530 (572)
Q Consensus 523 ~~A~~~~~ 530 (572)
.+|.++--
T Consensus 787 ~eAad~A~ 794 (829)
T KOG2280|consen 787 KEAADLAA 794 (829)
T ss_pred HHHHHHHH
Confidence 88876543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.033 Score=40.53 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 262 ITSTILMDSYFKNGDKFQALALWNDM 287 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 287 (572)
.++..+..+|...|++++|++.+++.
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444444444444443
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.6 Score=41.55 Aligned_cols=120 Identities=17% Similarity=0.090 Sum_probs=65.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcC
Q 008249 373 IQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS-FGVSS-NVFTFNALILAETRGG 450 (572)
Q Consensus 373 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p-~~~~~~~ll~~~~~~g 450 (572)
..++.+.|+..++-.+++.+-+..+.|+. +... .+.+.|+. +..-+++..+ ...+| +......+..+-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i--a~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI--ALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH--HHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 34566777777777777777766444432 2221 22344432 2222222221 11222 3445555666666777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 008249 451 SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN-LGHIHLALQLYDEMLRR 500 (572)
Q Consensus 451 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 500 (572)
++..|..--+.... ..|....|..|.+.--. .|+-.++...+.+.++.
T Consensus 344 e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 344 EFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77776665555544 35666677666665443 47777777777777653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.045 Score=53.24 Aligned_cols=64 Identities=17% Similarity=0.097 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 470 DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI----ITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778999999999999999999999999885 5664 35899999999999999999999999986
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.8 Score=42.07 Aligned_cols=430 Identities=13% Similarity=0.079 Sum_probs=224.4
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCC------hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH--HH
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPD------VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG--YC 199 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~ 199 (572)
+.+++++.+|..+|.++-+.- ..+ ...-+.++++|.-. +.+.....+....+..+ + ..|-.+..+ +-
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~--~-s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG--K-SAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC--C-chHHHHHHHHHHH
Confidence 456678888888887776542 112 22335567777653 45555444445444332 1 223333322 22
Q ss_pred hcCCHhHHHHHHHHHHHC--CCCC------------CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-CCCccHHHH
Q 008249 200 RVNELDKALHLFSTMANN--GIRP------------NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG-KATSDVITS 264 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 264 (572)
+.+++.+|.+.+..-... +..| |...=+..++.+...|++.+++.+++++...-.. ....+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 567788888777766544 2221 1111234566777888888888888777653210 111567777
Q ss_pred HHHHHHHHhcCC---------------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 008249 265 TILMDSYFKNGD---------------KFQALALWNDMFQK------NIQTDIVAYNVLINGFCLN--GDISSAFAYFCQ 321 (572)
Q Consensus 265 ~~l~~~~~~~g~---------------~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~ 321 (572)
+.++-.+.+.-- ++.+.-..++|... .+.|.......++....-. .+..--+++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 775554443211 11122222222211 1223333333333332221 122223333333
Q ss_pred HHHCCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008249 322 MLKRGFLPDVI-TYNTLLNCLCKQGKLDEASHFYGVLSKTGVA----PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS 396 (572)
Q Consensus 322 m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 396 (572)
....-+.|+.. ....+...+.+ +.+++..+-+.+....+. .=..++..++....+.++...|.+.+.-+.-.+
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 33444555532 22334444443 555555555554433211 123467777777788888888888887776543
Q ss_pred CCCCHH-----HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHHHH
Q 008249 397 VVPEPH-----IWNVIIDGYGR----CGDLSNAFSIRDLMLSFGVSSNVFTFNALI---LAETRGGS-IFDAFSLKKEML 463 (572)
Q Consensus 397 ~~~~~~-----~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll---~~~~~~g~-~~~a~~~~~~m~ 463 (572)
+..... +-..+.+..+. .-+...-..+|+......+. ....-..|+ .-+.+.|. -++|.++++...
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 321110 01122222221 11233344556666555432 111222232 33455555 889999999888
Q ss_pred hCCCCC-CHHHHHHH----HHHHHh---cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHhcCCHHHHHHHH
Q 008249 464 LDGIFP-DVFTYNLL----IGASCN---LGHIHLALQLYDEMLRRGITPDI----ITYTELIKG--HCARGNMKEAEEVF 529 (572)
Q Consensus 464 ~~~~~p-~~~~~~~l----i~~~~~---~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~--~~~~g~~~~A~~~~ 529 (572)
+- .| |...-|.+ =..|.. ...+..-..+-+-..+.|++|-. ..-|.|.+| +..+|++.++.-.-
T Consensus 408 ~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 408 QF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred Hh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 74 33 33332222 222322 23344444444445567877743 344555544 45789999987655
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 530 AKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 530 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.-+.+ +.|.+.+|..++-++....++++|..++.++.-
T Consensus 486 ~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 486 SWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 55554 689999999999999999999999999987643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.59 Score=47.43 Aligned_cols=164 Identities=18% Similarity=0.168 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCCH-----hHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCCcc
Q 008249 191 YNAFITGYCRVNELDKALHLFSTMANNG-IRPNR-----VTHNILVHALCK----KGLLGDAVKFLGEVLADDDGKATSD 260 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 260 (572)
...++....-.|+-+.+++++.+..+.+ +.-.. -+|...+..++. ....+.|.++++.+.+..| ..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP----~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP----NS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC----Cc
Confidence 3355555566666666666666654432 11111 123333332322 3456677777777776553 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008249 261 VITSTILMDSYFKNGDKFQALALWNDMFQKN--I-QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTL 337 (572)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 337 (572)
....-.-.+.+...|++++|++.|++..... . ......+--+.-.+.-.++|++|.+.|..+.+.. .-+..+|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 4444444556666777777777777544311 0 1123344445556666777777777777777642 1223333333
Q ss_pred HH-HHHHcCCH-------HHHHHHHHHHHh
Q 008249 338 LN-CLCKQGKL-------DEASHFYGVLSK 359 (572)
Q Consensus 338 l~-~~~~~g~~-------~~A~~~~~~~~~ 359 (572)
.. ++...|+. ++|.++|.++..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 22 33445555 677777776644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.2 Score=48.95 Aligned_cols=66 Identities=14% Similarity=0.013 Sum_probs=47.1
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV----LTHNYLVNELCKIGDLEKADHVIREMSEM 182 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 182 (572)
+.+...|+.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3355677777778888888888888887777653 442 34777777777777777777777777664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.27 Score=39.42 Aligned_cols=98 Identities=14% Similarity=0.035 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
|..++..++.++++.|+.+....+++..-. +.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345677777777777777777777655432 2211100 0000 0012234577777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHH
Q 008249 515 GHCARGNMKEAEEVFAKIQTL-GLAIDHIPFRILKKRYR 552 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~ 552 (572)
+|+..|++..|.++++...+. +++.+..+|..|++-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777776653 55556666776665433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.8 Score=41.94 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=69.8
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHH
Q 008249 163 LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242 (572)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 242 (572)
....|++.+|..+|.......++ +...--.++.+|...|+++.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34455666666666665555443 23444455566666666666666666554331111111212223333444433333
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCC
Q 008249 243 VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN-IQTDIVAYNVLINGFCLNGD 311 (572)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 311 (572)
..+-...-. ++ .|...-..+...+...|+.++|++.+-.+.+++ -.-|...-..++..+.-.|.
T Consensus 223 ~~l~~~~aa-dP----dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 QDLQRRLAA-DP----DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHh-CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333333322 11 455566666666666666666666655555431 12344455555555555553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.6 Score=40.09 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=25.4
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
...|+..+|..+|.......+ .+...-..++.+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~----~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAP----ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCc----ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555554443 333444445555555555555555555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.26 Score=39.99 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
.+-.-.....+.|++++|.+.|+.+..+- .+-...+...++.+|.+.|+++.|...+++..+..|..--..|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34444555678899999999999998871 1223456677889999999999999999999998876545566666666
Q ss_pred HHhcC
Q 008249 198 YCRVN 202 (572)
Q Consensus 198 ~~~~g 202 (572)
++...
T Consensus 92 L~~~~ 96 (142)
T PF13512_consen 92 LSYYE 96 (142)
T ss_pred HHHHH
Confidence 65543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.21 Score=45.20 Aligned_cols=99 Identities=19% Similarity=0.146 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNGIR--PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (572)
.|+.-+..+ +.|++..|.+.|...++.... -....+--|..++...|++++|..+|..+.+..+ ..+.-+...--|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P-~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP-KSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC-CCCCChHHHHHH
Confidence 455444333 555566666666666654211 1123344566666666666666666666666555 333444555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 008249 268 MDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
..+..+.|+.++|...|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66666666666666666666654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.22 Score=40.01 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIG 479 (572)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 479 (572)
|..++..++.++++.|+.+....+.+.. .|+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4567899999999999999999888654 344332110 0010 1123457899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 008249 480 ASCNLGHIHLALQLYDEMLR-RGITPDIITYTELIKGHCA 518 (572)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~ 518 (572)
+|+..|++..|+++.+...+ .+++.+..+|..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999876 4677788889888865443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.9 Score=37.43 Aligned_cols=126 Identities=9% Similarity=0.060 Sum_probs=79.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
-..+|..+.+.+.+..+..+++.+...+ ..++..++.++..|++.+ .++..+.++. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3467777877888888888888888776 367778888888888764 3333344332 1223334456777777
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC-CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008249 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK-GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
.+.++++.-++.++.. +...+..+... ++++.|.+++.+. .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~---------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ---------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC---------CCHHHHHHHHHHHH
Confidence 7777788777776632 11222223333 6777777776542 44556666665554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.27 Score=46.86 Aligned_cols=61 Identities=16% Similarity=0.050 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
+..+.-++.+.+++.+|++..+..+..++ .|+....--..++...|+++.|+..|+++.+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~----~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDP----NNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCC----CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44444445555555555555555555443 44444444455555555555555555555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.26 Score=47.02 Aligned_cols=140 Identities=14% Similarity=0.022 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008249 406 VIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG 485 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 485 (572)
.-.+.|.+.|++..|...|++....=- |...-+.++..... ..-...+..|.-++.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhh
Confidence 345677788888888888877654200 00001111111111 012234556666777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHhcCC-HHHHHHH
Q 008249 486 HIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIP-FRILKKRYRRMKE-SDKARDI 563 (572)
Q Consensus 486 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~-~~~A~~~ 563 (572)
++.+|++.-+...+.+ ++|......-..+|...|+++.|+..|+++++. .|+... -.-|+..-.+..+ .++..++
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777764 566666666777777777788888877777775 454433 3344444333333 3344677
Q ss_pred HHHHHh
Q 008249 564 HQKWLL 569 (572)
Q Consensus 564 ~~~~l~ 569 (572)
|.+|+.
T Consensus 349 y~~mF~ 354 (397)
T KOG0543|consen 349 YANMFA 354 (397)
T ss_pred HHHHhh
Confidence 777764
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.61 E-value=3 Score=42.21 Aligned_cols=410 Identities=11% Similarity=0.064 Sum_probs=229.6
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChh-hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVL-THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.+...|+.||.---...+.+.+...++.++.. .|... -|......=.+.|..+.+.++|++-...-| .++..|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip-~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP-LSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh-hHHHHHHHH
Confidence 45557888887666666667777888887765 35444 444555556778899999999998877544 677777776
Q ss_pred HHHHHh-cCCHhHHHHHHHHHHHC-CCC-CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 195 ITGYCR-VNELDKALHLFSTMANN-GIR-PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 195 i~~~~~-~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
...++. .|+.+.....|+..+.. |.. -....|...|..-...+++.....+++.+++... .....+-.--..+
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHH
Confidence 665554 47788888888887653 322 1345577777777778888888888888887432 1111111111111
Q ss_pred HhcC------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhH--HHHHH-----
Q 008249 272 FKNG------DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVIT--YNTLL----- 338 (572)
Q Consensus 272 ~~~g------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll----- 338 (572)
.... ..+++.++-...... ..-...+...+-.+ ..+...+-+.+..+ .+.+-
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~--~~v~~~~~~s~~l~~~~~~l~~~~~~ 260 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELE--IGVKDSTDPSKSLTEEKTILKRIVSI 260 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHH--HHHhhccCccchhhHHHHHHHHHHHH
Confidence 1111 122222221111110 00000111111111 11111111111111 11111
Q ss_pred --HHHHHcCCHHHHHHHHHHHHhCC---C----CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 339 --NCLCKQGKLDEASHFYGVLSKTG---V----APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID 409 (572)
Q Consensus 339 --~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 409 (572)
..+-..-...+....++.-++.. + +++..+|...+..-.+.|+.+...-++++..-- +..-...|-..+.
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~ 339 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYAR 339 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHH
Confidence 11122222223333344333321 1 234578888999999999999999999988652 1123344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCC
Q 008249 410 GYGRCGDLSNAFSIRDLMLSFGVS--SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFT-YNLLIGASCNLGH 486 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~ 486 (572)
-....|+.+-|..++....+...+ |....+.+.+ .-..|++..|..+++..... . |+..- -..-+....+.|+
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~ 415 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGN 415 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcc
Confidence 555669999998888777664332 3333333332 23457999999999999876 3 66432 2233445567888
Q ss_pred HHHHHH---HHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 008249 487 IHLALQ---LYDEMLRRGITPDIITYTELIK-----GHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMK 555 (572)
Q Consensus 487 ~~~A~~---~~~~m~~~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 555 (572)
.+.+.. ++..... | .-+..+...+.- .+.-.++.+.|..++.++... ++++...|..+++.....+
T Consensus 416 ~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 416 LEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 888873 3333222 1 222222222222 233467899999999999986 5667777888888776655
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.39 Score=43.46 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC-CHhHHHHHH
Q 008249 155 THNYLVNELCKIGDLEKADHVIREMSEMRPS--PNCATYNAFITGYCRVNELDKALHLFSTMANNGI-RP-NRVTHNILV 230 (572)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~ll 230 (572)
.|+.-+..| +.|++..|...|....+..|. -....+.-|...+...|++++|..+|..+.+.-. .| -+..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444433 345566666666666665542 1223444456666666666666666666654321 11 124455555
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCC
Q 008249 231 HALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
....+.|+.++|...|+++++..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 556666666666666666666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.99 Score=44.35 Aligned_cols=80 Identities=16% Similarity=0.061 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 453 FDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAK 531 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (572)
.+|.++.+...+.+.. |......+..+..-.++++.|..+|++.... .||. .+|......+.-.|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444322 4455445555445555555555555555553 2332 4444444455555555555555555
Q ss_pred HHHc
Q 008249 532 IQTL 535 (572)
Q Consensus 532 m~~~ 535 (572)
..+.
T Consensus 398 alrL 401 (458)
T PRK11906 398 SLQL 401 (458)
T ss_pred Hhcc
Confidence 5443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.3 Score=44.91 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=72.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHH
Q 008249 449 GGSIFDAFSLKKEMLLDGIFPDVFTYNLL-IGASCNLGHIHLALQLYDEMLRRG--I-TPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 449 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
....+.|.++++.+... -|+...|... .+.+...|++++|++.|++..... . +.....+.-+...+...+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34567777888877764 4665555333 344556788888888888765311 0 1223445566777778888888
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHH-HHHhcCCH-------HHHHHHHHHHH
Q 008249 525 AEEVFAKIQTLGLAIDHIPFRILKK-RYRRMKES-------DKARDIHQKWL 568 (572)
Q Consensus 525 A~~~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~l 568 (572)
|.+.|.++.+.. .-...+|..+.. ++...|+. ++|.++|+++.
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 888888888752 223334443332 34456777 77777777763
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.48 Score=37.41 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=24.3
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008249 163 LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
+...|+.+.|++.|.+....-| .....||.-..++--.|+.++|++=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444444455444444444333 2344444444444444444444444444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.37 E-value=5.5 Score=43.76 Aligned_cols=141 Identities=18% Similarity=0.100 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 369 YKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR 448 (572)
Q Consensus 369 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 448 (572)
|.-.++..-++|.+++|..++..=.+. -...|.+..+.+...+.+++|.-.|+..-+. ...+.+|..
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~ 977 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKE 977 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHH
Confidence 334444445566666666554321111 1223444445555566777776666654321 234566777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 449 GGSIFDAFSLKKEMLLDGIFPDVF--TYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAE 526 (572)
Q Consensus 449 ~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 526 (572)
+|+|.+|+.+..++... -|.. +-..|+.-+...+++-+|-++..+.... | .-.+..|++...+++|.
T Consensus 978 ~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred hccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHH
Confidence 78888888877766532 1222 2246667777788888888887776542 1 22344455566666666
Q ss_pred HHHHHHH
Q 008249 527 EVFAKIQ 533 (572)
Q Consensus 527 ~~~~~m~ 533 (572)
++.....
T Consensus 1047 rva~~~~ 1053 (1265)
T KOG1920|consen 1047 RVASKAK 1053 (1265)
T ss_pred HHHHhcc
Confidence 6554443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.51 Score=43.73 Aligned_cols=153 Identities=10% Similarity=-0.026 Sum_probs=100.7
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH----HHHHHHHHhCCCh
Q 008249 164 CKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTH----NILVHALCKKGLL 239 (572)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~ 239 (572)
.-.|++.+|-..++++.+..| .|..+++..=.++...|+.+.-...+++.... -.||...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345777777777888877665 47777777777888888888888888887643 12333222 2233344577888
Q ss_pred hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCHHHHH
Q 008249 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK---NIQTDIVAYNVLINGFCLNGDISSAF 316 (572)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~ 316 (572)
++|++.-++..+.++ .|...-.++.+.+-..|+..++.+...+-... +.-.-...|-...-.+...+.++.|+
T Consensus 192 ~dAEk~A~ralqiN~----~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 192 DDAEKQADRALQINR----FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hhHHHHHHhhccCCC----cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 888888888888776 77777788888888888888888776654321 10011122223333455667888888
Q ss_pred HHHHHH
Q 008249 317 AYFCQM 322 (572)
Q Consensus 317 ~~~~~m 322 (572)
++|+.-
T Consensus 268 eIyD~e 273 (491)
T KOG2610|consen 268 EIYDRE 273 (491)
T ss_pred HHHHHH
Confidence 888753
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.72 Score=36.45 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=24.6
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
...|+++.|++.|.+.+..-+ .....||.-..++--.|+.++|++-+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P----~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAP----ERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHhcc----cchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344445555555544444332 4444455544554445555555544444444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.33 Score=48.48 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
.+.++.-+-+.|.++.|+++-.+-. .-.....+.|+++.|.++.++. .+...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 5667777777777777776644322 2234455667777774443332 356677777777777
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHH
Q 008249 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 280 (572)
.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.....+. +|....++.-.|+.++.
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD---------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----------HHHHHHHHHHHT-HHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC---------HHHHHHHHHHcCCHHHH
Confidence 7777777777766532 44455556667777666666666655543 33444445555666666
Q ss_pred HHHHHH
Q 008249 281 LALWND 286 (572)
Q Consensus 281 ~~~~~~ 286 (572)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.24 E-value=4 Score=41.36 Aligned_cols=393 Identities=12% Similarity=0.019 Sum_probs=221.7
Q ss_pred HHHHHHHHhcCCCCCCCCcCHH-hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH-HcCChhHHHHH
Q 008249 98 LDRLKTMRDTGPVRCTLETDYR-RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELC-KIGDLEKADHV 175 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~ 175 (572)
.+.++.....+. +--|... -|-.....=.+.|..+.+.++|++..+ |++-+...|......++ ..|+.+...+.
T Consensus 61 ~~~~r~~y~~fL---~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 61 VDALREVYDIFL---SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHH---hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 344555555543 2334444 455555555677999999999999887 46667777777666554 44778888888
Q ss_pred HHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH---hCC------ChhHHHH
Q 008249 176 IREMSEMR-PS-PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC---KKG------LLGDAVK 244 (572)
Q Consensus 176 ~~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~g------~~~~a~~ 244 (572)
|+.....- .. .+...|...|..-..++++.....+|++.++. | ...|+....-|. +.. ..+++.+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence 88887632 21 34567888998888899999999999999874 2 222333322222 111 1222222
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH-------HHHHHhCCCHHHH
Q 008249 245 FLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI--VAYNVL-------INGFCLNGDISSA 315 (572)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l-------i~~~~~~g~~~~a 315 (572)
+-...... ......+...+-.+ ..+...+.+.+. ...+.+ -..+.......+.
T Consensus 213 l~~~~~~~----------------~~~~~~~~~~e~~~--~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 213 LRSDVAER----------------SKITHSQEPLEELE--IGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred HhhhHHhh----------------hhcccccChhHHHH--HHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 21111110 00000111111111 111111101111 111111 1122222333334
Q ss_pred HHHHHHHHHCC---C----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 008249 316 FAYFCQMLKRG---F----LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREF 388 (572)
Q Consensus 316 ~~~~~~m~~~g---~----~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 388 (572)
...|+.-.++- + .++..+|..-+..-.+.|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..+
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 44444443321 2 234567888888888999999999999887542 222234455555555666999999888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHh
Q 008249 389 LLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVF-TFNALILAETRGGSIFDAF---SLKKEMLL 464 (572)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~---~~~~~m~~ 464 (572)
+....+--.+..+.+--.-....-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. .++.....
T Consensus 354 ~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~ 431 (577)
T KOG1258|consen 354 LARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE 431 (577)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc
Confidence 8877665443233222222222345689999999999998753 4432 2222334456778888877 33333333
Q ss_pred CCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 465 DGIFPDVFTYNLLIGA-----SCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNM 522 (572)
Q Consensus 465 ~~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 522 (572)
... +....+.+.-- +.-.++.+.|..++.++.+. ++++...|..++..+..++..
T Consensus 432 ~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 432 GKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred ccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 222 22222222222 23468999999999999987 577888899999887766633
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.15 Score=45.81 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 453 FDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH 486 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 486 (572)
+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 4567777777777777777777777777766654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.2 Score=38.37 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=38.1
Q ss_pred HhCCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 008249 307 CLNGDISSAFAYFCQMLKRG--FLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 377 (572)
.+.|++++|.+.|+.+..+- -+-...+...++.++.+.+++++|....++..+.-......-|...|.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 35667777777777666541 111233444555566667777777776666665432222233444444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.78 Score=42.59 Aligned_cols=157 Identities=9% Similarity=0.006 Sum_probs=113.8
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
-..|+..+|-..++++++. .+.|...+.-.-+++.-.|+.+.-...+++++..-....|....+-..+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3568888888899999875 566777888888889999999999999999887633133334555556667778899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 008249 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR---GFLPDVITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
+|.+.-++..+.+ +.|.-.-.+..+.+-..|++.++.++..+-... +--.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999998876 667777788888888999999998877653321 100011122233344566789999999997
Q ss_pred HH
Q 008249 356 VL 357 (572)
Q Consensus 356 ~~ 357 (572)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.08 E-value=5 Score=41.71 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
..-+.+--+.-+...|+..+|.++-.+.. -||...|-.=+.+++..+++++-+++-+.+. .+.-|.....
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 33445555666777899999998887765 4788899888999999999998777765543 2455778899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008249 515 GHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDI 563 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 563 (572)
+|.+.|+.++|.+++-+.... .-.+.+|.+.|++.+|.++
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 999999999999988765432 1456677788888777654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.07 E-value=2.5 Score=41.86 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 476 LLIGASCNLGHIHLALQLYDEMLRRGITP--DIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
.|..++-+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555556677777777777665431 22 234555666677777777777766666543
|
The molecular function of this protein is uncertain. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.18 Score=45.37 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=78.2
Q ss_pred CCCcCHHhHHHHHHHHHhC-----CChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC
Q 008249 113 TLETDYRRHVAVIRDLCLG-----GKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN 187 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 187 (572)
+-+.|-.+|-+.+..+... +.++--...+..|.+.|+.-|..+|+.|++.+-|..-.. ..+|++..
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~F------- 132 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKVF------- 132 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHHH-------
Confidence 4556777777777766543 455666666777788888888888888887775532111 11222221
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCh-hHHHHHHHHHHh
Q 008249 188 CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL-GDAVKFLGEVLA 251 (572)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 251 (572)
--|- .+-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.+
T Consensus 133 --------~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 133 --------LHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred --------hhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 1111 22356789999999999999999999999999887753 344444444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=3 Score=41.10 Aligned_cols=146 Identities=10% Similarity=0.043 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHh---hCCCCCCHHHHHHHHHHHHh---------cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC
Q 008249 169 LEKADHVIREMS---EMRPSPNCATYNAFITGYCR---------VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (572)
Q Consensus 169 ~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 236 (572)
.+.|..+|.+.. +..|. ....|..+..++.. .....+|.++-++..+.+ +-|+.....+..+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 457778888887 44331 23444443333222 223456666666666654 23666666666666667
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCCHHHH
Q 008249 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI-QTDIVAYNVLINGFCLNGDISSA 315 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a 315 (572)
++++.|...|++....++ ....+|....-...-.|+.++|.+.+++..+... +.-.......++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~L~P----n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIHST----DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhcCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 777777777777777665 4455555555555667777777777777655421 11112222233344433 34555
Q ss_pred HHHHHH
Q 008249 316 FAYFCQ 321 (572)
Q Consensus 316 ~~~~~~ 321 (572)
+++|-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.82 Score=45.73 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=26.8
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
+...|..|.+...+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555544432 44444445555555554444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.76 E-value=2 Score=35.39 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 371 TIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413 (572)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 413 (572)
.++..+...+.......+++.+...+. .++...+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444445555555555444432 244444444444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.4 Score=40.96 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 441 ALILAETRGGSIFDAFSLKKEMLLDGIFP-DVFTYNLLIGASCNLGHIHLALQLYDEML 498 (572)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (572)
.+..++.+.|+.++|.+.+++|.+..... +......|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34444555566666666666665432111 22344456666666666666666665554
|
The molecular function of this protein is uncertain. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.7 Score=34.52 Aligned_cols=62 Identities=27% Similarity=0.305 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008249 335 NTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV 397 (572)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 397 (572)
...++.+...|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-++|.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33445555566666666666555542 244555555566666666666666666666655554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.8 Score=34.37 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
....+..+...|+-++-.+++.++.+.+. +++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~----~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEE----INPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH---------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccC----CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444555566666666666666654332 555555566666666666666666666666555
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.5 Score=35.65 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=23.7
Q ss_pred HhcCCHhHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 199 CRVNELDKALHLFSTMANNGI--RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.+.|++++|.+.|+.+...-. +-.......++.+|.+.+++++|...+++.++..|
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 344445555554444443310 00122233344444444444444444444444444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.2 Score=41.80 Aligned_cols=230 Identities=11% Similarity=0.048 Sum_probs=112.6
Q ss_pred HHhCCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHH
Q 008249 306 FCLNGDISSAFAYFCQMLKR--GFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT--GVAPD---QISYKTIIQGLCI 378 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~li~~~~~ 378 (572)
+....+.++|+..+.+...+ ....--.+|..+..+.++.|.+++++..--..+.. ..... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888877766543 11112345666667777777777665433211110 00111 1233344444444
Q ss_pred cCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc
Q 008249 379 HGDIVKAREFLLSMLEK-SVVP---EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-----SSNVFTFNALILAETRG 449 (572)
Q Consensus 379 ~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~ 449 (572)
.-++.+++.+-..-... |..| .-....++..++...+.++++.+.|+...+... ......+..|-..|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44455555444433332 1111 112233455666666677777777766654211 11234566666667777
Q ss_pred CCHHHHHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHH
Q 008249 450 GSIFDAFSLKKEMLLD----GIFPDVFTYN-----LLIGASCNLGHIHLALQLYDEMLR----RGITPD-IITYTELIKG 515 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~----~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~ 515 (572)
.++++|.-+..+..+. ++.--..-|. .+.-++-..|++..|.+.-++..+ .|-.+. ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7777776665554431 2111011121 222334455666666666655543 231211 1223445566
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 008249 516 HCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 516 ~~~~g~~~~A~~~~~~m~~~ 535 (572)
|...|+.+.|..-|+.+...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 66666766666666665543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.30 E-value=3.7 Score=36.60 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=8.3
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 008249 513 IKGHCARGNMKEAEEVFAK 531 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~ 531 (572)
|-.+....++..|.+.++.
T Consensus 197 ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHhhHHHHHHHHHHhcc
Confidence 3333344444444444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.16 Score=31.92 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=14.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
+..+...|...|++++|.++|+++++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34444445555555555555555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.30 E-value=10 Score=41.78 Aligned_cols=149 Identities=13% Similarity=-0.009 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI----LAETRGGSIFDA 455 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll----~~~~~~g~~~~a 455 (572)
++++.|+..+.++. ...|.-.++.--+.|-+.+|..++. |+...+.... ..+...+.+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 45555555555443 1223444444456677777766643 5555554444 444455667777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 456 FSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI--ITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 456 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
.-.|+..-+ ..-.+.+|..+|++.+|+.+..++.. .-+. .+-..|+.-+..+++.-+|-+++.+..
T Consensus 959 al~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 666654322 12346677888999999988887753 1222 223567778888888888888887766
Q ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008249 534 TLGLAIDHIPFRILKKRYRRMKESDKARDI 563 (572)
Q Consensus 534 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 563 (572)
.. ..-.+..|++...|++|.++
T Consensus 1027 sd--------~~~av~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 1027 SD--------PEEAVALLCKAKEWEEALRV 1048 (1265)
T ss_pred cC--------HHHHHHHHhhHhHHHHHHHH
Confidence 53 12233344555555555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.22 E-value=8.8 Score=40.61 Aligned_cols=148 Identities=12% Similarity=0.068 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
..-...+-+.+.|++++|...|-+-+.. +.|. .++.-|....+..+--..++.+.+.|. .+...-..|+.+|.
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYi 442 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHH
Confidence 3444556677889999999888776543 1222 244455555566666777788888877 46666678999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHH
Q 008249 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (572)
+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|.-+-..... ....... .+-..|++++
T Consensus 443 Klkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~--------he~vl~i---lle~~~ny~e 508 (933)
T KOG2114|consen 443 KLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK--------HEWVLDI---LLEDLHNYEE 508 (933)
T ss_pred HhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc--------CHHHHHH---HHHHhcCHHH
Confidence 9999988777766554 2311 11134456666777777777766554422 2223333 3345688889
Q ss_pred HHHHHHHHH
Q 008249 280 ALALWNDMF 288 (572)
Q Consensus 280 A~~~~~~~~ 288 (572)
|++.+..+.
T Consensus 509 Al~yi~slp 517 (933)
T KOG2114|consen 509 ALRYISSLP 517 (933)
T ss_pred HHHHHhcCC
Confidence 988887764
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.11 Score=31.03 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 543 PFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888854
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.04 E-value=7 Score=38.78 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=54.4
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH-HcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELC-KIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
++.|+..|...+.-+-+.+.+.+.-.+|..|.... +.++..|-.-..-.. ...+++.|..+|.+-.+..|. ++..|.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd-sp~Lw~ 178 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD-SPKLWK 178 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC-ChHHHH
Confidence 34588899999987777777999999999999863 334555544443333 334589999999988887663 444444
Q ss_pred HH
Q 008249 193 AF 194 (572)
Q Consensus 193 ~l 194 (572)
..
T Consensus 179 ey 180 (568)
T KOG2396|consen 179 EY 180 (568)
T ss_pred HH
Confidence 33
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=3.4 Score=34.64 Aligned_cols=123 Identities=20% Similarity=0.162 Sum_probs=52.2
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHH-H--HHHHHHHHHhc
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRV-THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVI-T--STILMDSYFKN 274 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~ 274 (572)
.+.|..++|+.-|..+.+.|...-+. ............|+...|...|+++-...+ . |.+. - --.-.-.+...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~--P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-I--PQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-C--cchhhHHHHHHHHHHHhcc
Confidence 34555666666666666555432111 111222334455666666666665554332 1 1111 0 00111123344
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
|.+++.....+.+...+-+.-...-..|.-+-.+.|++.+|.++|..+..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44444444444443333222223333344444444555555555544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.23 Score=31.19 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=11.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCC
Q 008249 157 NYLVNELCKIGDLEKADHVIREMSEMR 183 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 183 (572)
..+...|...|++++|+++|+++.+..
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 333444444444444444444444433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.8 Score=42.17 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----CCCCCCHhHHHH
Q 008249 154 LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN-----NGIRPNRVTHNI 228 (572)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 228 (572)
.++..++..+...|+++.+.+.++++....| -+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3456677778888999999999999988877 5788899999999999999999999988865 578887777665
Q ss_pred HHHH
Q 008249 229 LVHA 232 (572)
Q Consensus 229 ll~~ 232 (572)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.60 E-value=6.4 Score=36.92 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCChh---HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 225 THNILVHALCKKGLLG---DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
++..++.++...+..+ +|.++++.+....+ ..+.++-.-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~----~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG----NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC----CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3445555555555433 34445445544332 22334444445555566666666666666654
|
It is also involved in sporulation []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.56 E-value=1.2 Score=38.34 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CChHHHHH
Q 008249 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI--ITYTELIKGHCARGNMKEAEEVFAKIQTLGLA---IDHIPFRI 546 (572)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ 546 (572)
..+..+.+.|++.|+.++|.+.|.++.+....+.. ..+..+++.....|++..+...+.++...--. ++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45566777777777777777777777765433332 45566777777777777777777766543111 11111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHH
Q 008249 547 LKK--RYRRMKESDKARDIHQKW 567 (572)
Q Consensus 547 l~~--~~~~~g~~~~A~~~~~~~ 567 (572)
... .+...|++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 233566777777666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.55 E-value=6.5 Score=36.86 Aligned_cols=163 Identities=12% Similarity=0.043 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 403 IWNVIIDGYGRCGDLS---NAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIG 479 (572)
Q Consensus 403 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 479 (572)
++..++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+++.+.+.+|...-.. ....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 4566777777766654 455555555443222 2444445556666678888888888888875211 2233333333
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHH-HHHH---HHHhcCC------HHHHHHHHHHHHHc-CCCCChHH-
Q 008249 480 AS---CNLGHIHLALQLYDEMLRRGITPDII-TYT-ELIK---GHCARGN------MKEAEEVFAKIQTL-GLAIDHIP- 543 (572)
Q Consensus 480 ~~---~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~-~l~~---~~~~~g~------~~~A~~~~~~m~~~-g~~p~~~~- 543 (572)
.+ .. .....|...++.+....+.|... ... .++. .....++ .+...++++...+. +.+.+..+
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 33 33455666666665443444443 111 1111 1112111 44444555543332 22233332
Q ss_pred --HHHHH----HHHHhcCCHHHHHHHHHHHH
Q 008249 544 --FRILK----KRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 544 --~~~l~----~~~~~~g~~~~A~~~~~~~l 568 (572)
..+++ ..+.+.+++++|.++|+-.+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222 34667899999999998554
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.97 Score=41.63 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChHHHHHHH
Q 008249 474 YNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT-----LGLAIDHIPFRILK 548 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~ 548 (572)
+..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3444455555555555555555555442 33445555555555555555555555555443 35555555444443
Q ss_pred HH
Q 008249 549 KR 550 (572)
Q Consensus 549 ~~ 550 (572)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.22 Score=29.02 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 543 PFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
+|..++..|...|++++|+..|+++++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 466667777777777777777777766553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.41 E-value=6.8 Score=37.09 Aligned_cols=229 Identities=12% Similarity=0.123 Sum_probs=144.7
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC---HhHHHHHHHHHHH
Q 008249 271 YFKNGDKFQALALWNDMFQK--NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR--GFLPD---VITYNTLLNCLCK 343 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~ 343 (572)
+....+.++|+..|.+-..+ +...-..+|..+..+.++.|.+++++..--.-+.. ..... ...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999887764 11223456777788888888888876653322221 11111 1234445555555
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc
Q 008249 344 QGKLDEASHFYGVLSKT-GVAPD---QISYKTIIQGLCIHGDIVKAREFLLSMLEKS-----VVPEPHIWNVIIDGYGRC 414 (572)
Q Consensus 344 ~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~ 414 (572)
.-++.+++.+-..-... |..|. -...-++..++...+.++++++.|+...+-. .......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555665555443332 22231 1334456667777888999999999887532 222345788999999999
Q ss_pred CCHHHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHH
Q 008249 415 GDLSNAFSIRDLMLS----FGVSSNVFTFN-----ALILAETRGGSIFDAFSLKKEMLL----DGIFPD-VFTYNLLIGA 480 (572)
Q Consensus 415 g~~~~A~~~~~~~~~----~~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~ 480 (572)
.++++|.-...+..+ .++.--..-|. .+..++...|...+|.+.-++..+ .|-.|. ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999877665533 34332222233 334567788988888888877654 342222 3345567888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008249 481 SCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~ 499 (572)
|-..|+.+.|..-|+....
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 8899999999888887653
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.32 E-value=13 Score=39.53 Aligned_cols=191 Identities=18% Similarity=0.118 Sum_probs=96.5
Q ss_pred HcCCHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHH
Q 008249 378 IHGDIVKAREFLLSMLEKSV-VPE-------PHIWNVIIDGYGRCGDLSNAFSIRD--------LMLSFGVSSNVFTFNA 441 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~ 441 (572)
-.+++..|...+..+.+... .|+ +..+....-.+-..|+.+.|...|. .....+...+..++..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 47889999999998886421 111 2222222233345799999999997 4445555544444433
Q ss_pred H--HHHH--HhcCCHHH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHHhcC--CHHHHHHHHHHHHHC---CCCCCH
Q 008249 442 L--ILAE--TRGGSIFD--AFSLKKEMLLD-GIFP--DVFTYNLL-IGASCNLG--HIHLALQLYDEMLRR---GITPDI 506 (572)
Q Consensus 442 l--l~~~--~~~g~~~~--a~~~~~~m~~~-~~~p--~~~~~~~l-i~~~~~~g--~~~~A~~~~~~m~~~---g~~p~~ 506 (572)
+ +..+ ......++ +.++++.+... .-.| +..++..+ +.++.... ...++...+.+..+. ....+.
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 2 1112 22222333 66666655532 1122 33333333 33333221 122444444333221 111121
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC--ChHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 507 ---ITYTELIKGHCARGNMKEAEEVFAKIQTLGL-AI--DHIPFR-----ILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 507 ---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.+++.+..-+. .|+..+..+.......... .| ....|. .+.+.+...|+.++|.+..++.-.
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 22333333333 7888877666665443211 12 333452 344558889999999999887654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.23 E-value=7.6 Score=36.65 Aligned_cols=132 Identities=11% Similarity=0.154 Sum_probs=70.6
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh--CC----ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC-
Q 008249 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCK--KG----LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD- 276 (572)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 276 (572)
+++...+++.|.+.|+.-+..+|....-.... .. ....|..+++.|.+..+.-..++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788888888888777666553333222 12 345677888888877654444555555555443 2222
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008249 277 ---KFQALALWNDMFQKNIQTDIV-AYNVLINGFCLN-G--DISSAFAYFCQMLKRGFLPDVITYNTL 337 (572)
Q Consensus 277 ---~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g--~~~~a~~~~~~m~~~g~~p~~~~~~~l 337 (572)
.+.+..+|+.+.+.|...+-. -+.+-+-++... . ....+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 245555666666655443322 111111122111 1 133566666666666666655555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.17 E-value=4.6 Score=33.95 Aligned_cols=136 Identities=17% Similarity=0.128 Sum_probs=88.3
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHH-HHH-
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD-VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCAT-YNA- 193 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~- 193 (572)
+...|..-++ +.+.+..++|+.-|..+.+.|...= +.............|+...|...|+++-...+.|-+.- ...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445655555 6777888999999999888765422 22233344556778888888888988877655554431 111
Q ss_pred -HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 008249 194 -FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 194 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 253 (572)
-.-.+...|.+++.....+-+...+-+.....-..|.-+-.+.|++.+|.+.|..+....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 122345678888887777777655433334444556666678888888888888877643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.26 Score=28.62 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 543 PFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
.|..+...+...|++++|++.|++.++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455666777777777777777777766543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.97 E-value=1.5 Score=40.42 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=76.1
Q ss_pred CCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 008249 147 KGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRP---SPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR 223 (572)
Q Consensus 147 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 223 (572)
.|.+....+...++..-....+++++...+-+++...- .|+.. -.+.++.+ -.-++++++.++..=.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 45555666667777777777888888888877765211 11111 11223333 334677999999888899999999
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
++++.+++.+.+.+++.+|.++...++....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888876543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.81 E-value=8.8 Score=36.23 Aligned_cols=132 Identities=12% Similarity=0.049 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC-
Q 008249 382 IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR--C----GDLSNAFSIRDLMLSFGV---SSNVFTFNALILAETRGGS- 451 (572)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~---~p~~~~~~~ll~~~~~~g~- 451 (572)
+++.+.+++.+.+.|..-+..+|-+....... . ....+|..+|+.|.+..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677777777776665555443222222 1 134567777888877533 3445555555543 2233
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008249 452 ---IFDAFSLKKEMLLDGIFPDVF-TYNLLIGASCNL-G--HIHLALQLYDEMLRRGITPDIITYTELIKG 515 (572)
Q Consensus 452 ---~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~-g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 515 (572)
.+.++.+|+.+.+.|...+.. -+.+-+-+++.. . ....+.++++.+.+.|+++....|..++-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 245566677777766654422 222222222221 1 144677777777777777776666555443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.71 E-value=11 Score=40.05 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=30.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
+......+|-.+.++|.+++|.++..+..... ......+...+..|...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHhC
Confidence 44556677778888888888888775544322 23344566666676654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.50 E-value=7.4 Score=34.62 Aligned_cols=222 Identities=17% Similarity=0.077 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQ-TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR-GFLPDVITYNTLLNCLCKQGKLDEASH 352 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~~ 352 (572)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444454555444443211 02345555555556666666666665555432 122334444455555555555666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHH-HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 353 FYGVLSKTGVAPDQISYKTIIQ-GLCIHGDIVKAREFLLSMLEKSV--VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666555532222 111122222 45566666666666666544211 11222333333334455666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 430 FGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 430 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
.........+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 322112445555555555666666666666665553 222 22333333333344556666666665554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.20 E-value=7.5 Score=34.05 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=44.3
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANN 217 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (572)
-+.+||.|.--+...|+++.|.+.|+...+.+|.-+-...|.-|.. ---|++.-|.+-|...-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhc
Confidence 3567888888888888888888888888887765443333333322 2467888887777666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.18 E-value=3.6 Score=35.46 Aligned_cols=97 Identities=19% Similarity=0.058 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHhHHHH
Q 008249 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD--IVAYNVLINGFCLNGDISSAFAYFCQMLKR---GFLPDVITYNT 336 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ 336 (572)
..+..+...|++.|+.++|++.|.++.+....+. ...+-.+|+.....+++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566777778888888888888887776532222 344556677777777877777777665543 11111111111
Q ss_pred HHH--HHHHcCCHHHHHHHHHHHH
Q 008249 337 LLN--CLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 337 ll~--~~~~~g~~~~A~~~~~~~~ 358 (572)
... .+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1234566777666665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.2 Score=29.41 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=19.2
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 008249 246 LGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (572)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 281 (572)
|++.++..| .+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P----~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP----NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC----CCHHHHHHHHHHHHHCcCHHhhc
Confidence 344445444 56666666666666666666664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.87 E-value=6.7 Score=32.73 Aligned_cols=53 Identities=17% Similarity=0.023 Sum_probs=27.9
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+.++.+++..++..+.-..|.. +...++.. ..+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~--~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEF--PELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCc--hHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666665544422 33333332 2345566666666666665544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.42 Score=28.43 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 508 TYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
+|..|...|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.81 E-value=19 Score=37.73 Aligned_cols=245 Identities=16% Similarity=0.097 Sum_probs=131.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCccHHHHHHHH--HH-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHh
Q 008249 239 LGDAVKFLGEVLADDDGKATSDVITSTILM--DS-YFKNGDKFQALALWNDMFQ-------KNIQTDIVAYNVLINGFCL 308 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~ 308 (572)
...+.++++...+.+. ........++ .+ +....+.+.|+..|+.+.+ .| .+....-+...|.+
T Consensus 228 ~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4577888888777654 2222222222 22 3456788888888888876 44 33455666666666
Q ss_pred CC-----CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH----H
Q 008249 309 NG-----DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK-QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC----I 378 (572)
Q Consensus 309 ~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~ 378 (572)
.. +.+.|+.++.+..+.|. |+.......+..... ..+...|.++|....+.|.. ..+..+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 43 56778888888887764 344333322222222 24567888888888887742 22222222222 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hh----cC
Q 008249 379 HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE----TR----GG 450 (572)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~----~~----~g 450 (572)
..+...|..++.+.-+.| .|....-...+..+.. ++++.+...+..+.+.|.. ...+-...+..- .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccccc
Confidence 346788888888888887 2232222233333444 7777777776666665543 222222222110 00 12
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHC
Q 008249 451 SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNL----GHIHLALQLYDEMLRR 500 (572)
Q Consensus 451 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~ 500 (572)
+.+.+..++......| +......|.+.|... .+++.|...+......
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 3445555555555443 334444444443322 2456666666665554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.67 E-value=14 Score=35.99 Aligned_cols=66 Identities=14% Similarity=0.010 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 434 SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFP---DVFTYNLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 434 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
....+|..+...+.+.|.++.|...+..+...+..+ ++...-.-.+.+-..|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888888899998888888887643211 233333445666677888888888888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.46 E-value=2.9 Score=35.99 Aligned_cols=90 Identities=16% Similarity=0.017 Sum_probs=58.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008249 444 LAETRGGSIFDAFSLKKEMLLDGIFPD-----VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA 518 (572)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 518 (572)
.-+.+.|++++|..-|.+.++. +.+. ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 4466778888888888877765 2221 3344445556677778888877777777653 2223344444556777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 008249 519 RGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 519 ~g~~~~A~~~~~~m~~~ 535 (572)
...+++|++=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 77788888888887775
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.90 E-value=8.5 Score=32.12 Aligned_cols=50 Identities=22% Similarity=0.039 Sum_probs=24.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 448 RGGSIFDAFSLKKEMLLDGIFPDVFTY-NLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
+.++.+++..++..+.-. .|..... ..-...+...|++.+|.++|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 445556666666555542 3332221 1122334455666666666666544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.63 E-value=24 Score=36.90 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHH--H-HHhcCCHhHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHHhCC-
Q 008249 169 LEKADHVIREMSEMRPSPNCATYNAFIT--G-YCRVNELDKALHLFSTMAN-------NGIRPNRVTHNILVHALCKKG- 237 (572)
Q Consensus 169 ~~~A~~~~~~~~~~~~~~~~~~~~~li~--~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g- 237 (572)
...|.+.++...+.|- .........+. + +....+.+.|+..|+.+.. .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 3567777777766553 11111111221 2 3355678888888888766 44 3334555666665533
Q ss_pred ----ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----h
Q 008249 238 ----LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK-NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC----L 308 (572)
Q Consensus 238 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~ 308 (572)
+.+.|..++....+.+. ++....-..+..... ..+...|.+.|....+.|. +..+-.+..+|. .
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN----PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGV 376 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC----chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCc
Confidence 55668888887777665 554443333332222 2356778888877777762 222222222221 1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008249 309 NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (572)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 361 (572)
..+.+.|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+...|
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 236677777777777776 2222222222233333 55666655555555544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.51 E-value=9.9 Score=33.08 Aligned_cols=75 Identities=16% Similarity=0.038 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHH
Q 008249 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 280 (572)
++|.+.|-.+...+.--++.....|...|. ..+.+++.+++..+++........|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 556666666665554434444444444433 556666777666666544322235666666666666666666655
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.44 E-value=9.9 Score=32.14 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=8.9
Q ss_pred CCCCCChhhHHHHHHHHHHcCC
Q 008249 147 KGTVPDVLTHNYLVNELCKIGD 168 (572)
Q Consensus 147 ~g~~~~~~~~~~li~~~~~~g~ 168 (572)
.+++|+...+..+++.+.+.|+
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCC
Confidence 3333444444444444444443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.67 Score=26.87 Aligned_cols=29 Identities=24% Similarity=0.309 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 543 PFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
+|..+...|...|++++|.+.|++.++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45566677777777777777777776544
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.20 E-value=13 Score=33.24 Aligned_cols=205 Identities=14% Similarity=0.015 Sum_probs=93.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 305 (572)
|..-..+|....++++|...+.+..+-.. .+...| -....++.|.-+.+++.+. +--+..|+.-...
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yE----nnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYE----NNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHH----hcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 44445566667777777776666653221 111111 1122234444444444432 1223344555556
Q ss_pred HHhCCCHHHHHHHHHHHHHC--CCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 008249 306 FCLNGDISSAFAYFCQMLKR--GFLPDV--ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGD 381 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~--g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 381 (572)
|...|.++.|-..+++.-+. ++.|+. ..|..-+...-..++...|.++ +...-..+.+..+
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEK 165 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHH
Confidence 66666666555555443321 223321 1122222222222222222222 2333344555555
Q ss_pred HHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHH
Q 008249 382 IVKAREFLLSMLEK----SVVPEP-HIWNVIIDGYGRCGDLSNAFSIRDLMLSFG---VSSNVFTFNALILAETRGGSIF 453 (572)
Q Consensus 382 ~~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~ 453 (572)
+++|-..+.+-... ...++. ..|...|-.+.-..++..|...++.-.+.+ -+-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 55554444332211 111111 224455556666677888888777643321 123556677777766 346666
Q ss_pred HHHHHH
Q 008249 454 DAFSLK 459 (572)
Q Consensus 454 ~a~~~~ 459 (572)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 655443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.17 E-value=7 Score=39.67 Aligned_cols=98 Identities=16% Similarity=0.081 Sum_probs=51.2
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 008249 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDIS 313 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (572)
.+.|+++.|.++..+. .+..-|..|.+.....|++..|.+.|....+ |..|+-.+...|+-+
T Consensus 648 l~lgrl~iA~~la~e~---------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA---------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhcCcHHHHHHHHHhh---------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 4556666666655443 4455566666666666666666666655442 334444555555555
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 008249 314 SAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
....+-....+.|.. |.-.-+|...|+++++.+++.
T Consensus 710 ~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 710 GLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 444444444444321 222234445566666555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=17 Score=34.15 Aligned_cols=219 Identities=14% Similarity=0.108 Sum_probs=110.6
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh----hHHHHHHHHHhhCCCCCCHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDL----EKADHVIREMSEMRPSPNCAT 190 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~ 190 (572)
.+|.......+.++...|. ..+...+..+... +++..-...+.+++..|.. +++...+..+.... ++...
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHH
Confidence 3566666677777777775 3444444445443 4666666677777777763 45666666664433 34444
Q ss_pred HHHHHHHHHhcCCH-----hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH
Q 008249 191 YNAFITGYCRVNEL-----DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (572)
Q Consensus 191 ~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (572)
-...+.++...+.. ..+.+.+..... .++..+-...+.++.+.++ +++...+-.+++.. +..+-.
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d~------~~~VR~ 177 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKDP------NGDVRN 177 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcCC------CHHHHH
Confidence 44555555544321 223333333332 2355555556666666665 45556665555532 222333
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 008249 266 ILMDSYFKNG-DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (572)
Q Consensus 266 ~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (572)
..+.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.|+. .|+..+-...+.+ + .....+.++...
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhc
Confidence 3333333332 13345555554443 34555555666666666653 4444444444432 1 122444555555
Q ss_pred CCHHHHHHHHHHHHh
Q 008249 345 GKLDEASHFYGVLSK 359 (572)
Q Consensus 345 g~~~~A~~~~~~~~~ 359 (572)
|+. +|...+..+.+
T Consensus 249 g~~-~a~p~L~~l~~ 262 (280)
T PRK09687 249 GDK-TLLPVLDTLLY 262 (280)
T ss_pred CCH-hHHHHHHHHHh
Confidence 553 45555555444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.72 E-value=12 Score=32.20 Aligned_cols=129 Identities=13% Similarity=0.055 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---
Q 008249 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFN--ALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYN--- 475 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--- 475 (572)
...|..++.... .+.. +.....+.+.........-++. .+...+...|++++|..-++..... |....+.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 444555555543 2333 4444444444432111111222 2234566677777777777766643 2222222
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008249 476 --LLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 476 --~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
.|.+.....|.+++|+..++...+.+. .......-.+.+...|+-++|+.-|++....+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 234445567777777777766554321 22233444566777777777777777777664
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=23 Score=35.08 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=82.7
Q ss_pred HHHHHhCCChhhHHH-HHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 125 IRDLCLGGKIGTALW-LRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE 203 (572)
Q Consensus 125 i~~~~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (572)
|.--...|+...|.+ +|+.+....-.|+... .....+...|.++.+...+......- .....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhh
Confidence 444455677777764 5555554433344333 33344566789999988877664432 2345677788888889999
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
+++|..+-+-|....++ ++.......-..-..|-++++.-.++++....+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 99999999999887666 444444443344456778888888888876554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.49 Score=27.71 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 008249 542 IPFRILKKRYRRMKESDKA 560 (572)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A 560 (572)
..|..+...|...|++++|
T Consensus 14 ~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.22 E-value=13 Score=31.55 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=23.0
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHH
Q 008249 177 REMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHN 227 (572)
Q Consensus 177 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 227 (572)
+.+.+.+..|+...|..++..+.+.|++..- ..+...++-+|.....
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA 64 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLA 64 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHH
Confidence 3334445555555666666666666654333 2333334444444433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.01 E-value=6.7 Score=36.40 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=52.5
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008249 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS---VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFN 440 (572)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 440 (572)
....+...++..-....+++.++..+-++.... ..|+.. -.+.++.+ -.-+.++++.++..=+..|+-||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhhHH
Confidence 334444444444444556666666666665431 111111 11122222 2235556666666666666666777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 441 ALILAETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~m~~ 464 (572)
.+++.+.+.+++.+|..+.-.|..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 777766666666666666555554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.50 E-value=40 Score=36.38 Aligned_cols=225 Identities=14% Similarity=0.042 Sum_probs=120.8
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCH-------hHHHHHHH-HHHHcCCHHHHHHHHHHHHhC----CCCCCHhhHHHHHH
Q 008249 307 CLNGDISSAFAYFCQMLKRGFLPDV-------ITYNTLLN-CLCKQGKLDEASHFYGVLSKT----GVAPDQISYKTIIQ 374 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 374 (572)
....++.+|..++.++...-..|+. ..++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567899999988887654222221 12333322 234568889988888776653 12345566777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHH--HHHHhcCCHH--HHHHHHHHHHhC-----CC-CCCHHHHHH
Q 008249 375 GLCIHGDIVKAREFLLSMLEKSVVPEPHIW---NVII--DGYGRCGDLS--NAFSIRDLMLSF-----GV-SSNVFTFNA 441 (572)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li--~~~~~~g~~~--~A~~~~~~~~~~-----~~-~p~~~~~~~ 441 (572)
+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+.. +....|...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999999888877654222233322 2222 2344556332 223333333221 00 112344555
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 008249 442 LILAETRG-GSIFDAFSLKKEMLLDGIFPDVFT--YNLLIGASCNLGHIHLALQLYDEMLRRGITP----DIITYTELIK 514 (572)
Q Consensus 442 ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~ 514 (572)
++.++.+. +...++..-++--......|-... +..|+......|++++|...++++......+ +...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555552 122222222222222222222222 2367778888999999999999988643222 2222222222
Q ss_pred H--HHhcCCHHHHHHHHHH
Q 008249 515 G--HCARGNMKEAEEVFAK 531 (572)
Q Consensus 515 ~--~~~~g~~~~A~~~~~~ 531 (572)
. ....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2357888877776665
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.43 E-value=29 Score=34.77 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=82.5
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL 444 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 444 (572)
|....-+++..+..+.++.-...+..+|.+-| -+...|..++..|... ..+.-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445555566655555555566666666543 2445566666666655 445556666666665443 3444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 008249 445 AETRGGSIFDAFSLKKEMLLDGIFPD------VFTYNLLIGASCNLGHIHLALQLYDEMLR-RGITPDIITYTELIKGHC 517 (572)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~ 517 (572)
.|.+ ++.+.+..+|.++... +-|. ...|.-|...- ..+.+..+.+...... .|..--...+.-+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4443 5556666666555543 1111 11233222211 2344555555555543 232333344455555566
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 008249 518 ARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 518 ~~g~~~~A~~~~~~m~~~ 535 (572)
...++++|++++....+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 666666666666665554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.31 E-value=1.5 Score=25.35 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 508 TYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+|..+..+|...|++++|+..|+++.+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.25 E-value=5 Score=34.85 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChHHHHHHHHHHHhcCCHHHHH
Q 008249 488 HLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL---GLAIDHIPFRILKKRYRRMKESDKAR 561 (572)
Q Consensus 488 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~ 561 (572)
+.|.+.|-++...+.--++.....|+..|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566777777766655556666666666555 45677777777777664 23567777888888888888877764
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.20 E-value=10 Score=38.59 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=48.5
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
.+.|+.+.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD------------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc------------hhhhhhhhhhcCChh
Confidence 35556666555544332 344456666666666666666666544322 333444444555554
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008249 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQ 321 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 321 (572)
....+-....+.| .-|. ..-+|...|+++++.+++..
T Consensus 710 ~l~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 710 GLAVLASLAKKQG-KNNL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhc-ccch-----HHHHHHHcCCHHHHHHHHHh
Confidence 4444444444444 2221 12234455666666655543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.10 E-value=70 Score=38.76 Aligned_cols=319 Identities=10% Similarity=0.030 Sum_probs=159.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 228 ILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307 (572)
Q Consensus 228 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (572)
.+..+-.+.+.+..|...++.-..... .-......|..+...|...++++...-+...-.. .|+ .+ .-|-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek-~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK-EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHH
Confidence 344455677888888888887421111 1002334555566688888888887777664211 122 22 3344456
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHHcCCHHHHH
Q 008249 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKT-IIQGLCIHGDIVKAR 386 (572)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~ 386 (572)
..|++..|...|+.+...+ ++...+++-+++.....|.++...-..+-.... ..+....++. =+.+--+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7889999999999888763 223667777777777777777776655554443 1222222222 233335666777666
Q ss_pred HHHHHHHhCCCCCCHHHHHHH--HHHHHhcC--CHHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCCHH
Q 008249 387 EFLLSMLEKSVVPEPHIWNVI--IDGYGRCG--DLSNAFSIRDLMLSFGVSS---------NVFTFNALILAETRGGSIF 453 (572)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~~~~~~~~p---------~~~~~~~ll~~~~~~g~~~ 453 (572)
..+. .. +..+|... .....+.. +.-.-....+.+.+.-+.| -...|..++....-..-
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-- 1609 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-- 1609 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH--
Confidence 6555 11 22223222 22222221 1111112222222211110 11223333322211110
Q ss_pred HHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HC----CCC-CCHHHHHHHHHHHHhcCC
Q 008249 454 DAFSLKKEMLLDGIFPD------VFTYNLLIGASCNLGHIHLALQLYDEML-RR----GIT-PDIITYTELIKGHCARGN 521 (572)
Q Consensus 454 ~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~----g~~-p~~~~~~~l~~~~~~~g~ 521 (572)
....+... +..++ ..-|-.-+..-....+..+-+--+++.. .. ++. --..+|....+.....|+
T Consensus 1610 --~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1610 --ENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred --HHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 01111111 12222 1111111111111111222111111111 11 111 123678888888888999
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 522 MKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 522 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
++.|...+-++.+.+ .| ..+.-..+.+...|+...|..++++.++.+
T Consensus 1686 ~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999888888764 22 334456677888999999999999888654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.6 Score=25.16 Aligned_cols=28 Identities=32% Similarity=0.304 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 508 TYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.|..+...+...|++++|++.+++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777776664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.61 E-value=1.4 Score=26.91 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 543 PFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
+++.|...|...|++++|..++++.++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666677777777777777776654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.24 E-value=5 Score=30.00 Aligned_cols=42 Identities=7% Similarity=0.166 Sum_probs=19.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 492 QLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 492 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
+-++.+....+.|++....+.+++|.+.+++..|.++++-.+
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333334444555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.89 E-value=21 Score=31.43 Aligned_cols=84 Identities=14% Similarity=0.033 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 008249 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAF 316 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 316 (572)
|-++-|.--|.+.+...| .-+.+||-|.--+...|+++.|.+.|+...+.+..-+-...|--|. +.-.|++.-|.
T Consensus 79 GL~~LAR~DftQaLai~P----~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq 153 (297)
T COG4785 79 GLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQ 153 (297)
T ss_pred hHHHHHhhhhhhhhhcCC----CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhH
Confidence 444444455555555554 5566777777777888888888888888877642222222222222 22457777777
Q ss_pred HHHHHHHHC
Q 008249 317 AYFCQMLKR 325 (572)
Q Consensus 317 ~~~~~m~~~ 325 (572)
+-+-+.-+.
T Consensus 154 ~d~~~fYQ~ 162 (297)
T COG4785 154 DDLLAFYQD 162 (297)
T ss_pred HHHHHHHhc
Confidence 766665544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.86 E-value=16 Score=30.04 Aligned_cols=51 Identities=10% Similarity=0.002 Sum_probs=24.8
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.++.+++..+++.+.-..|.. +...++... .+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~--~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNL--KELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCc--cccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555555444322 233333322 234555566666666555544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.45 E-value=2.3 Score=39.65 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=62.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008249 443 ILAETRGGSIFDAFSLKKEMLLDGIFP-DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGN 521 (572)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 521 (572)
..-|.+.|.+++|+..|...+.. .| |.+++..-..+|.+..++..|..-....+..+ ..-...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 45688899999999999887764 45 88888888889999999988887777776532 1111223333333333455
Q ss_pred HHHHHHHHHHHHHcCCCCCh
Q 008249 522 MKEAEEVFAKIQTLGLAIDH 541 (572)
Q Consensus 522 ~~~A~~~~~~m~~~g~~p~~ 541 (572)
..+|.+=++..++. .|+.
T Consensus 181 ~~EAKkD~E~vL~L--EP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPKN 198 (536)
T ss_pred HHHHHHhHHHHHhh--Cccc
Confidence 55666656665554 5654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.10 E-value=35 Score=33.17 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=40.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP---EPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
...+|..+...+.+.|.++.|...+..+...+... .+...-.-+..+-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777777777777777777777776643211 233334445555666777777777766655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.02 E-value=1.4 Score=25.08 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 546 ILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
.++.++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666666677777777666654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.33 E-value=7.6 Score=29.39 Aligned_cols=41 Identities=7% Similarity=0.183 Sum_probs=18.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 494 YDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 494 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
++.+....+.|++.+..+.+++|.+.+++..|+++++-.+.
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333344445555555555555555555555555554443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.11 E-value=27 Score=30.24 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=51.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 008249 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (572)
Q Consensus 230 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (572)
...+...|++++|...++..+.... .......+--.|.+.....|.+++|+..++.....+. .......-.+.+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~-De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTK-DENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3455667777777777776664321 1001122333455566666777777777666654321 112223334556666
Q ss_pred CCHHHHHHHHHHHHHCC
Q 008249 310 GDISSAFAYFCQMLKRG 326 (572)
Q Consensus 310 g~~~~a~~~~~~m~~~g 326 (572)
|+-++|..-|.+....+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777776666653
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.08 E-value=10 Score=28.43 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008249 452 IFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELI 513 (572)
Q Consensus 452 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 513 (572)
.-++.+-++.+...++.|++......+++|-+.+++..|.++++-...+ +..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 3445555666666677778887888888888888888888888776643 222444555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.99 E-value=2.9 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 507 ITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887765
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=83.87 E-value=65 Score=34.41 Aligned_cols=234 Identities=10% Similarity=0.015 Sum_probs=122.2
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+.+...-.....+....|+.++|......+-..|. ..+...+.++..+.+.|...... +.++|...-...+...-..+
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l 203 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYL 203 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHH
Confidence 45666667888889999998888877777766653 35677888888888777554332 22222211111122222222
Q ss_pred HHHHHh------------cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--hCCChhHHHHHHHHHHhCCCCCCCcc
Q 008249 195 ITGYCR------------VNELDKALHLFSTMANNGIRPNRVTHNILVHALC--KKGLLGDAVKFLGEVLADDDGKATSD 260 (572)
Q Consensus 195 i~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~ 260 (572)
...+.. ..+...+..++.. +.|+...-..++.++. ...+.+.|..++..............
T Consensus 204 ~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~ 278 (644)
T PRK11619 204 AKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQR 278 (644)
T ss_pred HHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHH
Confidence 221100 0111111111111 1223211121122221 34456788888887655442111122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008249 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNC 340 (572)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (572)
..++..+.......+...++...++...... .+......-++.....++++.+...+..|-... .-...-.--+.++
T Consensus 279 ~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa 355 (644)
T PRK11619 279 QELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADL 355 (644)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHH
Confidence 3344445444444433456666666544332 244445555556667888888888887775432 2233344456666
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 008249 341 LCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~ 358 (572)
+...|+.++|...|..+.
T Consensus 356 ~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 356 LLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHcCCHHHHHHHHHHHh
Confidence 667788888888887763
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.33 E-value=67 Score=34.19 Aligned_cols=416 Identities=14% Similarity=0.088 Sum_probs=212.4
Q ss_pred CHHhHHHHHHHHH-hCCChhhHHHHHHHHHhCCCCCChh-----hHHHHHHHHHHcCChhHHHHHHHHHhhCCCC----C
Q 008249 117 DYRRHVAVIRDLC-LGGKIGTALWLRRKMIQKGTVPDVL-----THNYLVNELCKIGDLEKADHVIREMSEMRPS----P 186 (572)
Q Consensus 117 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~ 186 (572)
+..++-.+...|. ...+++.|...+++.....-.++.. ....++..+.+.+... |...+++..+.--. +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 5567788888887 5689999999999876543233222 2234567777776655 88888876653222 2
Q ss_pred CHHHHHHH-HHHHHhcCCHhHHHHHHHHHHHCC---CCCCHhHHHHHHHHHH--hCCChhHHHHHHHHHHhCC------C
Q 008249 187 NCATYNAF-ITGYCRVNELDKALHLFSTMANNG---IRPNRVTHNILVHALC--KKGLLGDAVKFLGEVLADD------D 254 (572)
Q Consensus 187 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~------~ 254 (572)
-...+..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..+++.+.++++.... +
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 23333333 333334479999999998886532 2344455555555443 4565677777777663311 1
Q ss_pred CCCCccHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhC-----CCC-------------------------CCHHHH---
Q 008249 255 GKATSDVITSTILMDSYF--KNGDKFQALALWNDMFQK-----NIQ-------------------------TDIVAY--- 299 (572)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~-----~~~-------------------------~~~~~~--- 299 (572)
...+|...+|..+++.++ ..|+++.+...++++.+. ... +....|
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 123356777777777654 567776766665555321 000 111111
Q ss_pred ------HHHHH--HHHhCCCHHHHHHHHH-------HHH-HCCCCCC--------HhHHHHHHH---------HHHHcCC
Q 008249 300 ------NVLIN--GFCLNGDISSAFAYFC-------QML-KRGFLPD--------VITYNTLLN---------CLCKQGK 346 (572)
Q Consensus 300 ------~~li~--~~~~~g~~~~a~~~~~-------~m~-~~g~~p~--------~~~~~~ll~---------~~~~~g~ 346 (572)
.-++. ..+..+..+.|.++++ +.. .....+. ...+...+. ..+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 11122 1233444445555544 444 1111111 111211221 2245688
Q ss_pred HHHHHHHHHHHHhCCC-CC-----CHhhHHHHHH--HHHHcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHH---
Q 008249 347 LDEASHFYGVLSKTGV-AP-----DQISYKTIIQ--GLCIHGDIVKAREFLL--------SMLEKSVVPEPHIWNVI--- 407 (572)
Q Consensus 347 ~~~A~~~~~~~~~~~~-~~-----~~~~~~~li~--~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l--- 407 (572)
+..|...+..+.+... .| ....+..++. .+-..|+.+.|...|. .....+...+...+..+
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~ 456 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLA 456 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHH
Confidence 8889998888876421 11 1223333333 3345799999999998 44444444444433321
Q ss_pred -HHHHHhcCCHHH--HHHHHHHHHhC---CCCCCHHHHHHHH-HHHHhcCC--HHHHHHHHHHHHhC---CCCCC---HH
Q 008249 408 -IDGYGRCGDLSN--AFSIRDLMLSF---GVSSNVFTFNALI-LAETRGGS--IFDAFSLKKEMLLD---GIFPD---VF 472 (572)
Q Consensus 408 -i~~~~~~g~~~~--A~~~~~~~~~~---~~~p~~~~~~~ll-~~~~~~g~--~~~a~~~~~~m~~~---~~~p~---~~ 472 (572)
|--+.......+ +..+++.+... ....+..++..++ .++..... ..++...+.+..+. ....+ ..
T Consensus 457 ~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~ 536 (608)
T PF10345_consen 457 IILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAI 536 (608)
T ss_pred HHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 111122222333 66777766442 1122334444443 33322111 12444433332211 11111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRRG-ITP--DIITYTE-----LIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
+++.+...+. .|+..+............ -.| ....|.. +...+...|+.++|.....+...
T Consensus 537 ~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 537 LLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3333333343 688777665555433211 112 3345533 33446678999999998877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.20 E-value=73 Score=34.50 Aligned_cols=227 Identities=15% Similarity=0.052 Sum_probs=124.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHH-HHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 008249 341 LCKQGKLDEASHFYGVLSKTGVAPDQ-------ISYKTIIQG-LCIHGDIVKAREFLLSMLEK----SVVPEPHIWNVII 408 (572)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li 408 (572)
.....++++|..+..++...-..|+. ..++.+-.. ....|++++|.++.+...+. -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567899999988887664222222 123333222 23468889999888877653 2344566778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHH--HHHHhcCCH--HHHHHHHHHHHhC-----CC-CCCHHHHH
Q 008249 409 DGYGRCGDLSNAFSIRDLMLSFGVSSNVFT---FNALI--LAETRGGSI--FDAFSLKKEMLLD-----GI-FPDVFTYN 475 (572)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~ll--~~~~~~g~~--~~a~~~~~~m~~~-----~~-~p~~~~~~ 475 (572)
.+..-.|++++|..+.....+..-.-++.. |..+. ..+...|+. .+....+...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999988877655322223333 33332 234556632 2333333333221 10 11234455
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChHHHHHHH
Q 008249 476 LLIGASCNL-GHIHLALQLYDEMLRRGITPDIIT--YTELIKGHCARGNMKEAEEVFAKIQTLGLAI----DHIPFRILK 548 (572)
Q Consensus 476 ~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l~ 548 (572)
.+..++.+. +...++..-+.--......|-..- +..|+..+...|+.++|...+.++......+ +...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555551 222222222222222211121222 2367788889999999999999988753333 222222222
Q ss_pred H--HHHhcCCHHHHHHHHHHH
Q 008249 549 K--RYRRMKESDKARDIHQKW 567 (572)
Q Consensus 549 ~--~~~~~g~~~~A~~~~~~~ 567 (572)
+ .....|+.+++.....+-
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hHHHhcccCCHHHHHHHHHhc
Confidence 2 234678888887776663
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.04 E-value=69 Score=34.09 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=59.7
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVP---DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
|+-+.+.+.+++|+.+.+..... .| .......+|..+...|++++|-...-.|.. -+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 45567777888887776654432 33 234566777777778888888777777743 4555666666666555
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008249 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
++......+ +.......++..|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554433222 2211112345566666666655
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.69 E-value=7.5 Score=36.49 Aligned_cols=94 Identities=17% Similarity=0.054 Sum_probs=64.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 408 IDGYGRCGDLSNAFSIRDLMLSFGVSS-NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH 486 (572)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 486 (572)
.+-|.+.|.+++|+..|...... .| |.+++..-..+|.+...+..|+.-....+..+ ..-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 35689999999999999887764 34 78888888889999998888777666655431 1112334444444444566
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 008249 487 IHLALQLYDEMLRRGITPDI 506 (572)
Q Consensus 487 ~~~A~~~~~~m~~~g~~p~~ 506 (572)
..+|.+-++...+ +.|+.
T Consensus 181 ~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHHhHHHHHh--hCccc
Confidence 7777777776666 46663
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.68 E-value=31 Score=29.97 Aligned_cols=21 Identities=38% Similarity=0.382 Sum_probs=10.9
Q ss_pred HHHcCChhHHHHHHHHHhhCC
Q 008249 163 LCKIGDLEKADHVIREMSEMR 183 (572)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~ 183 (572)
+.+.|++++|..-+.+.++.-
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c 125 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC 125 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC
Confidence 445555555555555555433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.62 E-value=2.3 Score=24.22 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 511 ELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.+..++.+.|++++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455556666666666666666654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.21 E-value=42 Score=31.08 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
+.+.....|..+|.+.+|.++-+.....+ +.+...+-.++..+...|+--.+.+.++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34444556666777777777666666654 5566666666677777776666666655554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.79 E-value=44 Score=30.98 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChHHH
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT-----LGLAIDHIPF 544 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 544 (572)
+++.....|..+|.+.+|.++.++.+... +.+...|-.++..+...|+--.|.+.++++.+ .|+..|..++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34455667788888899988888888753 56677788888888888887778777777653 3666665543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.78 E-value=13 Score=32.61 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=25.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVL 250 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 250 (572)
++.+.+.+...+++.+.++-.+.. +.|..+-..++..+|-.|++++|..-++-+-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 444445555555555554444432 1133334444455555555555554444433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.47 E-value=0.54 Score=38.91 Aligned_cols=122 Identities=9% Similarity=0.040 Sum_probs=77.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008249 441 ALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARG 520 (572)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 520 (572)
.++..+.+.+.++....+++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356777778888888888888887665667888888999999888878888777621 1122345777788888
Q ss_pred CHHHHHHHHHHHHHcC--CC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 521 NMKEAEEVFAKIQTLG--LA--IDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 521 ~~~~A~~~~~~m~~~g--~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.+++|.-++.++.... +. -+...+...+..+.+.++.+-...+.+..++
T Consensus 85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~ 137 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLD 137 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 8888888888765431 11 1222344444445555554444444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.28 E-value=11 Score=33.02 Aligned_cols=59 Identities=20% Similarity=0.146 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 227 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
+.-++.+.+.+.+++++...++-++..+ .+...-..+++.+|-.|++++|..-++..-+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakP----tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKP----TDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCC----ccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3445556666777777777777776555 5566666677777777777777766665544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.76 E-value=17 Score=31.06 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHH-------HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 008249 417 LSNAFSIRDLMLSFGVSSNVFTFNA---LILAETRGGSIFDA-------FSLKKEMLLDGIFPD-VFTYNLLIGASCNLG 485 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~~a-------~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g 485 (572)
++.|.+.++.-...++ .|...++. .+.-+++..+..++ +.-|++.+. +.|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 3455555555444332 24443333 33333333443334 333444444 4565 466667777766443
Q ss_pred C-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008249 486 H-----------IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 486 ~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
. +++|...|++..+ ..|+..+|+.-+... ++|-++..++.+.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 2 4455555555555 367777777766654 24566666666554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.46 E-value=0.68 Score=38.33 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=58.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008249 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (572)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (572)
.+|..+.+.+.+..+.++++.+...+...+....+.++..|++.+..++..+.++.... .-...++..+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 36677777888888888888888776566788888999999998877887666652211 22335566666677
Q ss_pred CHhHHHHHHHHH
Q 008249 203 ELDKALHLFSTM 214 (572)
Q Consensus 203 ~~~~A~~~~~~m 214 (572)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 777776666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.9 bits (182), Expect = 3e-14
Identities = 23/190 (12%), Positives = 55/190 (28%), Gaps = 9/190 (4%)
Query: 141 RRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM---RPSPNCATYNAFITG 197
+ Q L A H++ R YNA + G
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174
Query: 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV-KFLGEVLADDDGK 256
+ R + +++ + + G+ P+ +++ + + ++ + + L + +G
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ--MSQEGL 232
Query: 257 ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT-DIVAYNVLINGFCLNGDISSA 315
+ T+ +L S +A+ F Q V + L+ S
Sbjct: 233 KLQALFTAVLL--SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY 290
Query: 316 FAYFCQMLKR 325
+
Sbjct: 291 PKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.5 bits (176), Expect = 2e-13
Identities = 24/196 (12%), Positives = 50/196 (25%), Gaps = 4/196 (2%)
Query: 321 QMLKRGFLPDVITYNTLLNCLCKQGKLDEASH---FYGVLSKTGVAPDQISYKTIIQGLC 377
Q + C +L A H + + Y ++ G
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS-IRDLMLSFGVSSNV 436
G + L + + + P+ + + GR + + M G+
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDE 496
L+ E R + +K L P + L+ +L+
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296
Query: 497 MLRRGITPDIITYTEL 512
+ + + EL
Sbjct: 297 LKTLQCLFEKQLHMEL 312
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.4 bits (173), Expect = 4e-13
Identities = 28/239 (11%), Positives = 77/239 (32%), Gaps = 13/239 (5%)
Query: 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLL---SMLEKSVVP 399
+ LD G S+ ++ Q + + + A L+ +K +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFS-L 458
++N ++ G+ R G + ++ G++ ++ ++ A + R
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 459 KKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA 518
++M +G+ +L+ + ++ P + ++L++ A
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 519 RGNMKEAEEVFAKIQTLGLAID---------HIPFRILKKRYRRMKESDKARDIHQKWL 568
+ ++ ++TL + + ++K KE AR +
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLR 342
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.5 bits (168), Expect = 2e-12
Identities = 26/177 (14%), Positives = 62/177 (35%), Gaps = 6/177 (3%)
Query: 123 AVIRDLCLGGKIGTA---LWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREM 179
A + L ++ A L + QK + + +N ++ + G ++ +V+ +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 180 SEMRPSPNCATYNAFITGYCRVNELDKAL-HLFSTMANNGIRPNRVTHNILVHALCKKGL 238
+ +P+ +Y A + R ++ + M+ G++ + +L+ + +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD 295
L K + V TS +L D Y K+G + +
Sbjct: 252 LKAVHKVKPTF--SLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.5 bits (168), Expect = 2e-12
Identities = 26/235 (11%), Positives = 55/235 (23%), Gaps = 37/235 (15%)
Query: 172 ADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVH 231
A + + SP + LD + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291
L A L + + QK
Sbjct: 136 CCLLTDQLPLA-----------------------------------HHLLVVHHGQRQKR 160
Query: 292 IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA- 350
+ YN ++ G+ G + G PD+++Y L C+ +Q +
Sbjct: 161 KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTI 220
Query: 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWN 405
+S+ G+ + ++ ++KA + P +
Sbjct: 221 ERCLEQMSQEGLKLQALFTAVLLSEEDRAT-VLKAVHKVKPTFSLPPQLPPPVNT 274
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.8 bits (161), Expect = 1e-11
Identities = 25/244 (10%), Positives = 60/244 (24%), Gaps = 42/244 (17%)
Query: 165 KIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN---NGIRP 221
L+ + S+ + S AF ++L A HL
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281
+N ++ ++G + V
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVY------------------------------------- 186
Query: 282 ALWNDMFQKNIQTDIVAYNVLINGFCLNGDIS-SAFAYFCQMLKRGFLPDVITYNTLLNC 340
+ + + D+++Y + + + QM + G + LL+
Sbjct: 187 -VLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245
Query: 341 LCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPE 400
+ L S P ++ +++ + V + L + + E
Sbjct: 246 EDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
Query: 401 PHIW 404
+
Sbjct: 306 KQLH 309
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 5e-10
Identities = 79/469 (16%), Positives = 150/469 (31%), Gaps = 130/469 (27%)
Query: 174 HVIREMSEMRPSPNCATYN--------AFITGY-CR-VNELDKALHLFSTMANNGI--RP 221
H+ E E + Y AF+ + C+ V ++ K++ S + I
Sbjct: 6 HMDFETGEHQ-----YQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSK 58
Query: 222 NRVTHN-ILVHALCKKGLLGDAVK-FLGEVLADDDG----KATSDVITSTILMDSYFKNG 275
+ V+ L L K + V+ F+ EVL + ++ +++ Y +
Sbjct: 59 DAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 276 DKFQALALWND--MF--------------QKNIQTDIVAYNVLINGF------CLNGDIS 313
D+ L+ND +F ++ + A NVLI+G + D+
Sbjct: 117 DR-----LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 314 SAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTII 373
++ C+M I + L NC + L+ + + S +
Sbjct: 172 LSYKVQCKM------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 374 QGLCIHGDIVKAREFLLS-MLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV 432
+ IH + R L S E ++ ++ ++ NA +
Sbjct: 226 R---IHSIQAELRRLLKSKPYENCLL--------VLL------NVQNAKAW--------- 259
Query: 433 SSNVFTFNALILAETRGGSIFDAFSLKK------EMLLDGIFPDVFTYNLLIGASCNLGH 486
N F + IL TR + D S + + PD +LL L
Sbjct: 260 --NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLL--LKY-LDC 313
Query: 487 -----------IH-LALQLYDEMLRRGI-------TPDIITYTELIKGHCARGNMKEAEE 527
+ L + E +R G+ + T +I+ E +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 528 VFAKIQTLGLAI---D-HIPFRILKKRYRRMKESDKARDIHQKWLLRNK 572
+F + L++ HIP +L + + +SD + K L
Sbjct: 374 MFDR-----LSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNK--LHKY 414
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 26/208 (12%), Positives = 73/208 (35%), Gaps = 13/208 (6%)
Query: 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN--ELDKAL 208
+ + + ++A +E + ++ ++ + E D L
Sbjct: 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVL 256
Query: 209 HL-FSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267
L +ST + R + + ++ + L A +L + + +SD++
Sbjct: 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK---SSDLLLC--K 311
Query: 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF 327
D+ F LA+ + + + ++ Y + + +G+ + + ++ R
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369
Query: 328 LPD-VITYNTLLNCLCKQGKLDEASHFY 354
P+ +T+ + K+ EA ++
Sbjct: 370 -PEKAVTWLAVGIYYLCVNKISEARRYF 396
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 572 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.15 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.04 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.04 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.03 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.02 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.99 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.96 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.96 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.95 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.83 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.73 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.73 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.73 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.67 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.66 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.63 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.59 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.54 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.5 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.43 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.41 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.4 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.39 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.39 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.39 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.38 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.32 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.32 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.31 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.3 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.28 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.24 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.19 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.18 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.1 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.1 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.09 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.09 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.08 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.06 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.95 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.91 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.91 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.88 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.84 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.8 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.8 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.75 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.72 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.71 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.71 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.58 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.57 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.56 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.56 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.49 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.45 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.37 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.29 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.07 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.02 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.01 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.0 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.93 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.87 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.86 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.84 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.71 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.54 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.36 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.35 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.02 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.01 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.95 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.82 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.78 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.49 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.38 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.32 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.3 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.02 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.92 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.81 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.22 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.18 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.08 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.91 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.48 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.25 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.03 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.72 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.48 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.53 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.39 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.68 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.03 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.75 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.8 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.72 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.62 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.6 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.97 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.71 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.45 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.78 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.37 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=350.24 Aligned_cols=442 Identities=12% Similarity=0.040 Sum_probs=391.9
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.+++..|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+++... .++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 367889999999999999999999999999864 578899999999999999999999999998653 4788999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC---------------CCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCc
Q 008249 195 ITGYCRVNELDKALHLFSTMANN---------------GIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATS 259 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 259 (572)
+.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++++.++ .
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~ 232 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA----K 232 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----T
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----h
Confidence 99999999999999999953221 2244688999999999999999999999999998765 4
Q ss_pred cHHHHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008249 260 DVITSTIL--------------------------------------MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNV 301 (572)
Q Consensus 260 ~~~~~~~l--------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 301 (572)
+...+..+ +..|.+.|++++|.++|+++.+. +++..+|+.
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLC 310 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHH
Confidence 44443333 55667889999999999999876 689999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 008249 302 LINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGD 381 (572)
Q Consensus 302 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 381 (572)
++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+. .+.+..+++.++..|.+.|+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999875 347788999999999999999999999999875 35578999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 382 IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKE 461 (572)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 461 (572)
+++|.++|+++.+.... +..+|+.++.+|.+.|++++|..+|+++.+.++ .+..+|+.++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999886543 788999999999999999999999999988654 4789999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 462 MLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR----GITPD--IITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 462 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+.+... .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.
T Consensus 467 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 998643 37899999999999999999999999999875 66787 789999999999999999999999999987
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 536 GLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 536 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
+ +.+..+|..++..|.+.|++++|.+.|+++++.++
T Consensus 546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 546 S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 4 44788999999999999999999999999987653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=326.49 Aligned_cols=423 Identities=12% Similarity=0.053 Sum_probs=369.5
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC----------
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR---------- 183 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------- 183 (572)
..|+..++..++..|.+.|++++|..+|+.+... +++..+++.++.+|.+.|++++|.++|+++....
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 4578889999999999999999999999998654 6789999999999999999999999998643221
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH-----------------------------
Q 008249 184 -----PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNIL----------------------------- 229 (572)
Q Consensus 184 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----------------------------- 229 (572)
..++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 1236889999999999999999999999999886422 33333332
Q ss_pred ---------HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008249 230 ---------VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYN 300 (572)
Q Consensus 230 ---------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 300 (572)
+..|.+.|++++|.++|+++.+. + ++..+++.++.+|.+.|++++|+++|+++.+.+ +.+..+++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 343 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-E----KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYP 343 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-G----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-C----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHH
Confidence 44566788999999999998765 2 889999999999999999999999999999876 55888999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 008249 301 VLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (572)
Q Consensus 301 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (572)
.++.++.+.|++++|.++++++.+. .+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999865 35578899999999999999999999999998853 446889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008249 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKK 460 (572)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 460 (572)
++++|+++|+++.+.+.. +..+|..++.+|.+.|++++|..+|+++.+..+ .+..+|+.++..|.+.|++++|.++|+
T Consensus 422 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp CHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999987654 788999999999999999999999999988654 378999999999999999999999999
Q ss_pred HHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 461 EMLLD----GIFPD--VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 461 ~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99876 66787 7899999999999999999999999999864 56889999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHH
Q 008249 535 LGLAIDHIPFRILKKRY 551 (572)
Q Consensus 535 ~g~~p~~~~~~~l~~~~ 551 (572)
.. +.+...+..+...|
T Consensus 579 ~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 579 IS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HC-TTCHHHHHHHHHTT
T ss_pred cC-CCChHHHHHHHHHH
Confidence 73 22556666666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-28 Score=240.60 Aligned_cols=381 Identities=15% Similarity=0.049 Sum_probs=215.9
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL 204 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 204 (572)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+..| .+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 345566677777777777666542 33445555566666667777777777766666554 4566677777777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALW 284 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 284 (572)
++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++++..+ .+...+..+...+...|++++|.+.|
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP----DLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT----TCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 77777777766542 22344566666667777777777777777666554 45556666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008249 285 NDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP 364 (572)
Q Consensus 285 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 364 (572)
+++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..... +.
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 6666553 3345566666666666666666666666665542 1234445555555555555555555555554431 12
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL 444 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 444 (572)
+..++..+...+.+.|++++|.+.++++.+.++. +..+|..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------------------------~~~~~~~l~~ 279 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------------------------------------FPDAYCNLAN 279 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------------------------------------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------------------------------CHHHHHHHHH
Confidence 3444455555555555555555555555443322 3344444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 445 AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
.+.+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+..++..++.+|.+.|++++
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555554432 224455555555555555555555555555543 13334555555555555566666
Q ss_pred HHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcC
Q 008249 525 AEEVFAKIQTLGLAI-DHIPFRILKKRYRRMK 555 (572)
Q Consensus 525 A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 555 (572)
|.+.++++.+. .| +...|..+...+...|
T Consensus 358 A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 358 ALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 66665555543 23 3344555555554443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-28 Score=240.70 Aligned_cols=365 Identities=14% Similarity=0.048 Sum_probs=287.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++..++..+ .+..+|..+...|.+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p----~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP----LLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CchHHHHHHHHHHHHC
Confidence 345556777777777777766542 22344555566667777777777777777777554 6677777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFY 354 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 354 (572)
|++++|++.|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|
T Consensus 81 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 77777777777777653 4455667777777777888888888887777652 223445566667777778888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008249 355 GVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS 434 (572)
Q Consensus 355 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 434 (572)
+.+.+.. +.+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++..+..+.
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence 8777752 335677888888888888888888888888876544 6778888899999999999999999988875432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
+..++..+...+...|++++|.+.++++.+.+.. +..+|..+...+.+.|++++|...|+++.+.. +.+..+|..++.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 6788999999999999999999999999986432 57889999999999999999999999999863 678899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 515 GHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
.+...|++++|.+.++++.+.. +.+..++..++..|.+.|++++|.+.|+++++.++
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999862 34577899999999999999999999999987653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=262.95 Aligned_cols=185 Identities=18% Similarity=0.219 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHHHH
Q 008249 369 YKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD---------LSNAFSIRDLMLSFGVSSNVFTF 439 (572)
Q Consensus 369 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~p~~~~~ 439 (572)
++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444444444444444444444444444444444444444444443332 45556666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008249 440 NALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR 519 (572)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 519 (572)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 008249 520 GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRR 553 (572)
Q Consensus 520 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 553 (572)
|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666555554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=258.97 Aligned_cols=185 Identities=14% Similarity=0.137 Sum_probs=104.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC---------HHHHHHHHHHHHhCCCCCCHhhH
Q 008249 299 YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGK---------LDEASHFYGVLSKTGVAPDQISY 369 (572)
Q Consensus 299 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~~ 369 (572)
++.+|++|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. +++|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 34555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG 449 (572)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 449 (572)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 483 (572)
|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-25 Score=227.11 Aligned_cols=409 Identities=11% Similarity=-0.038 Sum_probs=307.4
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|..+...+.+.|++++|+..|+++++.. |+..++..+..++.+.|++++|...++++.+..| .+..+|..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHH
Confidence 34567888899999999999999999999875 7999999999999999999999999999999876 47789999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHH--------------------------
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVL-------------------------- 250 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------------------------- 250 (572)
++.+.|++++|...|+++...+ +++......++..+........+.+.+..+.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999999875 3344444444444443322222222221110
Q ss_pred --------hCCCCCC-------CccHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHH
Q 008249 251 --------ADDDGKA-------TSDVITSTILMDSYFK---NGDKFQALALWNDMFQ-----KNI--------QTDIVAY 299 (572)
Q Consensus 251 --------~~~~~~~-------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~ 299 (572)
....... +.+...+......+.. .|++++|+..|+++.+ ... +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 0000000 1124555555555554 7888888888888887 311 2235667
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 008249 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH 379 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 379 (572)
..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 778888888888888888888888764 337777888888888888888888888887753 34567788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLK 459 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (572)
|++++|...++++.+.... +...+..+...+...|++++|...++.+.+... .+..++..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888876544 566788888888888888888888888877533 25667888888888888888888888
Q ss_pred HHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 460 KEMLLDGIF-PD----VFTYNLLIGASCN---LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAK 531 (572)
Q Consensus 460 ~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (572)
+++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...|...|++++|.+.+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 887764211 11 3377788888888 888888888888888753 45667788888888888888888888888
Q ss_pred HHHc
Q 008249 532 IQTL 535 (572)
Q Consensus 532 m~~~ 535 (572)
+.+.
T Consensus 475 a~~~ 478 (514)
T 2gw1_A 475 SADL 478 (514)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8886
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-24 Score=220.44 Aligned_cols=404 Identities=13% Similarity=0.033 Sum_probs=213.6
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
....|..+...+.+.|++++|+..|+++++.. +.++.++..+..+|.+.|++++|++.++++.+..| .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34578889999999999999999999999874 55788999999999999999999999999999876 47889999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC-
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG- 275 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 275 (572)
++...|++++|...|+.+ .. .|+.. ...+..+...+...+|...++.++...+... +........+..+....
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRG-SQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-ccccchHhHHHHHHHhcC
Confidence 999999999999999744 22 23322 2223344555566788888888876422100 00001112222233333
Q ss_pred -----------------------------------------CHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHH
Q 008249 276 -----------------------------------------DKFQALALWNDMFQKNIQTDI-------VAYNVLINGFC 307 (572)
Q Consensus 276 -----------------------------------------~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~ 307 (572)
++++|..+++++.+.. +.+. .++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHH
Confidence 3444444444444432 1111 12333334444
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 008249 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKARE 387 (572)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (572)
..|++++|...++++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 445555555555554443 2334444444444445555555555555444432 2234444444445555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008249 388 FLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGI 467 (572)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 467 (572)
.++++.+..+. +...+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++++.+...
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 55554443322 334444444455555555555555554444321 1333444444445555555555555544443210
Q ss_pred -----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 468 -----FPDVFTYNLLIGASCNL----------GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKI 532 (572)
Q Consensus 468 -----~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 532 (572)
......+..+...+... |++++|...|+++.+.. +.+..++..+..+|...|++++|.+.|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 00111122223334444 45555555555544431 233344444555555555555555555554
Q ss_pred HHc
Q 008249 533 QTL 535 (572)
Q Consensus 533 ~~~ 535 (572)
.+.
T Consensus 489 l~~ 491 (537)
T 3fp2_A 489 AIL 491 (537)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-23 Score=209.70 Aligned_cols=387 Identities=16% Similarity=0.080 Sum_probs=214.2
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008249 137 ALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 137 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
+...+.++.... +.+...+..++..+.+.|++++|..+|+++.+..| .+..+|..+..++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444331 34556666667777777777777777777666544 3566666677777777777777777777666
Q ss_pred CCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008249 217 NGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDV---ITSTILMDSYFKNGDKFQALALWNDMFQKNIQ 293 (572)
Q Consensus 217 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 293 (572)
.+ +.+..++..+..++.+.|++++|.+.|++++...+ .+. ..+..++..+...
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~------------------- 144 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP----SENEEKEAQSQLIKSDEMQ------------------- 144 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHHHHHH-------------------
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHH-------------------
Confidence 53 22455666666677777777777777777766554 444 5555554331000
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 008249 294 TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTII 373 (572)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 373 (572)
.+..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...++.+.+.. +.+..++..+.
T Consensus 145 ----~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 218 (450)
T 2y4t_A 145 ----RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIS 218 (450)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 01111223444455555555555544431 2234444455555555555555555555544431 22444555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC----HH
Q 008249 374 QGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVI------------IDGYGRCGDLSNAFSIRDLMLSFGVSSN----VF 437 (572)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~ 437 (572)
..|...|++++|...++++.+..+. +...+..+ ...+...|++++|...|+.+.+..+. + ..
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~ 296 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVR 296 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHH
Confidence 5555555555555555555443222 22223222 66667777777777777777664321 2 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--
Q 008249 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKG-- 515 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-- 515 (572)
.+..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++.+.. +-+...+..+..+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 56666777777777777777777776542 2246677777777777777777777777777642 2334555555522
Q ss_pred ----------HHhcC-----CHHHHHHHHHH-HHHcCCCCC----h-------HHHHHHHHHHHhcCCHHHHH
Q 008249 516 ----------HCARG-----NMKEAEEVFAK-IQTLGLAID----H-------IPFRILKKRYRRMKESDKAR 561 (572)
Q Consensus 516 ----------~~~~g-----~~~~A~~~~~~-m~~~g~~p~----~-------~~~~~l~~~~~~~g~~~~A~ 561 (572)
|...| +.+++.+.+++ ..+. .|| . ..+..+..+|...|+.+++.
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33333 56677888876 3333 232 1 25667777777777766544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-23 Score=207.81 Aligned_cols=301 Identities=15% Similarity=0.123 Sum_probs=218.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+.++..|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+++.+.+| .+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 4577889999999999999999999999999863 55788999999999999999999999999999876 468899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCC-H---hHHHHH------------HHHHHhCCChhHHHHHHHHHHhCCCCCCC
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPN-R---VTHNIL------------VHALCKKGLLGDAVKFLGEVLADDDGKAT 258 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 258 (572)
..+|.+.|++++|.+.|+++.+. .|+ . ..+..+ ...+...|++++|...|++++...+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---- 174 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV---- 174 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Confidence 99999999999999999999875 344 3 455555 3447778888888888888887665
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHH
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTL 337 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 337 (572)
.+..++..++.+|.+.|++++|++.|+++.+.. +.+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~ 251 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHY 251 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 677788888888888888888888888887654 456778888888888888888888888888765 333 3333333
Q ss_pred ------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008249 338 ------------LNCLCKQGKLDEASHFYGVLSKTGVAPD-----QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPE 400 (572)
Q Consensus 338 ------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 400 (572)
...+.+.|++++|...|+.+.+. .|+ ...+..+...+.+.|++++|+..++++.+..+. +
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~ 328 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-N 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-c
Confidence 45555555555555555555543 222 224455555555555555555555555543221 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
...|..+..+|...|++++|...++++.+
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45555555555555555555555555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-22 Score=204.85 Aligned_cols=382 Identities=11% Similarity=0.004 Sum_probs=304.4
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.||..+|..+...+.+.|++++|...++++++.+ +.+..++..+..++.+.|++++|...|+++.+.++ ++......+
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 113 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPM 113 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHH
Confidence 3688999999999999999999999999999874 55678999999999999999999999999999876 344444444
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCC-------------------CCCC-------------------------HhHHHHHH
Q 008249 195 ITGYCRVNELDKALHLFSTMANNG-------------------IRPN-------------------------RVTHNILV 230 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g-------------------~~p~-------------------------~~~~~~ll 230 (572)
+..+........+.+.+..+...+ ..|+ ...+....
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (514)
T 2gw1_A 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193 (514)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 444444333333333332111110 0111 33344444
Q ss_pred HHHHh---CCChhHHHHHHHHHHh-----C--CCCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008249 231 HALCK---KGLLGDAVKFLGEVLA-----D--DDGK---ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV 297 (572)
Q Consensus 231 ~~~~~---~g~~~~a~~~~~~~~~-----~--~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 297 (572)
..+.. .|++++|...+++++. . .+.. .+.+..++..++..+...|++++|...|+++.+.. |+..
T Consensus 194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~ 271 (514)
T 2gw1_A 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVN 271 (514)
T ss_dssp HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHH
Confidence 44554 8999999999999999 6 3211 02457789999999999999999999999999875 3388
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 008249 298 AYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377 (572)
Q Consensus 298 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 377 (572)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHH
Confidence 89999999999999999999999998763 3466788899999999999999999999998864 346778899999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---c
Q 008249 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVS-SN----VFTFNALILAETR---G 449 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~---~ 449 (572)
..|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.... ++ ...+..+...+.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999986544 6778999999999999999999999998764322 12 3488999999999 9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008249 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI 506 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 506 (572)
|++++|...++++.+... .+...+..+...+.+.|++++|...|+++.+. .|+.
T Consensus 429 ~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp THHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred CCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 999999999999988642 25788899999999999999999999999985 4554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-20 Score=194.81 Aligned_cols=372 Identities=11% Similarity=0.051 Sum_probs=290.5
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+.++.+|..+...|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...|+ .....+.+. ...
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~----~~~ 129 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD----GAS 129 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC----hHH
Confidence 3578899999999999999999999999999874 5578899999999999999999999997 444333222 223
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC------CCCCCHhH------------------------------HHHHHHHHHhC--
Q 008249 195 ITGYCRVNELDKALHLFSTMANN------GIRPNRVT------------------------------HNILVHALCKK-- 236 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~------------------------------~~~ll~~~~~~-- 236 (572)
+..+...+...+|...++.+... ...|+... ...+...+...
T Consensus 130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp --CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhh
Confidence 44555566667888888888543 11222222 12222222222
Q ss_pred ------CChhHHHHHHHHHHhCCCCCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 237 ------GLLGDAVKFLGEVLADDDGKATSD-----VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (572)
Q Consensus 237 ------g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 305 (572)
|++++|..+++++++..+.. ++ ..++..+...+...|++++|.+.|+++.+. .|+...+..+...
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLSANTVD--DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCC--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCCc--chhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHH
Confidence 37889999999999987622 21 335777888899999999999999999987 4568889999999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 008249 306 FCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKA 385 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 385 (572)
+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998863 3467889999999999999999999999998864 33567899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc----------C
Q 008249 386 REFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-----SSNVFTFNALILAETRG----------G 450 (572)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~----------g 450 (572)
...++++.+..+. +...+..+...+...|++++|...++.+.+... ......+..+...+... |
T Consensus 364 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 9999999987544 677899999999999999999999999876421 11223345556677777 9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 451 SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 451 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
++++|...++++.+... .+...+..+...+...|++++|...|+++.+.
T Consensus 443 ~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999998643 35788999999999999999999999999985
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-19 Score=174.98 Aligned_cols=314 Identities=13% Similarity=0.073 Sum_probs=205.1
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
|+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+..| .+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 45678888899999999999999999988863 45678888899999999999999999999988765 36788889999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCC----CHhHHHHH------------HHHHHhCCChhHHHHHHHHHHhCCCCCCCcc
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRP----NRVTHNIL------------VHALCKKGLLGDAVKFLGEVLADDDGKATSD 260 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 260 (572)
.+...|++++|...|+++.+. .| +...+..+ ...+...|++++|.+.++++++..+ .+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~ 153 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV----WD 153 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TC
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----Cc
Confidence 999999999999999999875 34 34444444 4667777778888888777777655 56
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008249 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNC 340 (572)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (572)
...+..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 6777777777777777777777777777664 5566777777777777777777777777776642 1122222111000
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCC
Q 008249 341 LCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEP----HIWNVIIDGYGRCGD 416 (572)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~ 416 (572)
. .......+...+.+.|++++|...++++.+.... +. ..+..+...+...|+
T Consensus 232 -----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 232 -----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp -----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccC
Confidence 0 0001111233444555555555555555443322 11 113334455555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 465 (572)
+++|...++...+..+ .+..++..+...+...|++++|...|+++.+.
T Consensus 288 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555555554321 24455555555555555555555555555553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-19 Score=175.00 Aligned_cols=331 Identities=13% Similarity=0.012 Sum_probs=218.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHH
Q 008249 187 NCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI 266 (572)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 266 (572)
++..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++++..+ .+...+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM----DFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CcchHHHH
Confidence 34566777777777888888888888777653 33566777777777778888888888887777654 56677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 008249 267 LMDSYFKNGDKFQALALWNDMFQKNIQ---TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK 343 (572)
Q Consensus 267 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (572)
+...+...|++++|...|+++.+.. + .+...+..+...+. ...+..+...+..
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 7777777888888888777777653 2 23333333311100 0012223445566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 344 QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423 (572)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 423 (572)
.|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665542 334556666666666666666666666666665433 556666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCH
Q 008249 424 RDLMLSFGVSSNVFTFN------------ALILAETRGGSIFDAFSLKKEMLLDGIFPDV----FTYNLLIGASCNLGHI 487 (572)
Q Consensus 424 ~~~~~~~~~~p~~~~~~------------~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~ 487 (572)
++...+..+. +...+. .+...+.+.|++++|...++++.+.... +. ..+..+...+...|++
T Consensus 211 ~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence 6666554322 222222 2356678889999999999888875322 22 2345577888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHh
Q 008249 488 HLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID-HIPFRILKKRYRR 553 (572)
Q Consensus 488 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~ 553 (572)
++|...+++..+.. +.+..+|..+...+...|++++|.+.++++.+. .|+ ...+..+..+...
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 99999999988752 457788889999999999999999999999886 454 4555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-17 Score=168.19 Aligned_cols=364 Identities=14% Similarity=0.056 Sum_probs=273.1
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHH
Q 008249 138 LWLRRKMIQKGTVPDVLTHNYLVNELCK----IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR----VNELDKALH 209 (572)
Q Consensus 138 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 209 (572)
...+....+.| ++.++..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455544443 66667777777776 778888888888877653 45667777777777 778888888
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh----cCCHHHHH
Q 008249 210 LFSTMANNGIRPNRVTHNILVHALCK----KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK----NGDKFQAL 281 (572)
Q Consensus 210 ~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 281 (572)
.|++..+.| +...+..|...|.. .+++++|.+.|++....+ +...+..|...|.. .++.++|+
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG------RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 888887754 55666667777776 678888888888887743 45567777777776 77888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHH
Q 008249 282 ALWNDMFQKNIQTDIVAYNVLINGFCL----NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK----QGKLDEASHF 353 (572)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~ 353 (572)
+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888887764 56777777777777 788888888888887764 45566667777765 6788888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHH
Q 008249 354 YGVLSKTGVAPDQISYKTIIQGLCI----HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC-----GDLSNAFSIR 424 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~ 424 (572)
|+...+.| +...+..+...|.. .++.++|++.|++..+.+ ++..+..+...|... +++++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 88887754 45566667777776 788888888888887764 556677777777776 8888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 008249 425 DLMLSFGVSSNVFTFNALILAETRGG---SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLALQLYDEM 497 (572)
Q Consensus 425 ~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 497 (572)
++..+.+ +...+..+...|...| ++++|.+.|++..+.+ +...+..|...|.. .+++++|...|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8888764 4566777777777656 7788888888888763 67777788888887 78899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 008249 498 LRRGITPDIITYTELIKGHCA----RGNMKEAEEVFAKIQTLGL 537 (572)
Q Consensus 498 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 537 (572)
.+.| +...+..|...|.. .++.++|.+.|++..+.+.
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8865 56777888888887 7889999999999888753
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-17 Score=172.31 Aligned_cols=422 Identities=9% Similarity=-0.015 Sum_probs=267.7
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+-|...|..++. +.+.|++++|..+|+++++. .|.+...|..++..+.+.|++++|..+|++..... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 447778888888 47788999999999998876 35567788888888889999999999999988865 466777777
Q ss_pred HHHH-HhcCCHhHHHH----HHHHHHH-CCCCC-CHhHHHHHHHHHHh---------CCChhHHHHHHHHHHhCCCCCCC
Q 008249 195 ITGY-CRVNELDKALH----LFSTMAN-NGIRP-NRVTHNILVHALCK---------KGLLGDAVKFLGEVLADDDGKAT 258 (572)
Q Consensus 195 i~~~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~ 258 (572)
+... ...|++++|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|+++++. +..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~-- 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMI-- 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCT--
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhh--
Confidence 6533 34577776665 6666654 35444 45667777776655 57788888888888873 211
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HCC---CCC
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML------KRG---FLP 329 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~------~~g---~~p 329 (572)
.....|..........|. . +...++. ...+++..|..++..+. +.. ++|
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 222334333221111110 0 0011110 01234455555554421 111 233
Q ss_pred C--------HhHHHHHHHHHHHc----CCH----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-------cCCHH---
Q 008249 330 D--------VITYNTLLNCLCKQ----GKL----DEASHFYGVLSKTGVAPDQISYKTIIQGLCI-------HGDIV--- 383 (572)
Q Consensus 330 ~--------~~~~~~ll~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~--- 383 (572)
+ ...|...+...... ++. +.+..+|++.... .+.+...|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 12333333222221 122 3566677777664 23466777777777665 57766
Q ss_pred ----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 008249 384 ----KAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN-VFTFNALILAETRGGSIFDAFSL 458 (572)
Q Consensus 384 ----~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 458 (572)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+..+. + ...|..++..+.+.|++++|.++
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHH
Confidence 78888888876222235777888888888888888888888888774321 2 24777777777778888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008249 459 KKEMLLDGIFPDVFTYNLLIGA-SCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 537 (572)
Q Consensus 459 ~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 537 (572)
|++..+.... +...|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|+++...+.
T Consensus 379 ~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 379 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 8888765221 22222222222 235788888888888877652 44567788888888888888888888888887632
Q ss_pred -CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 538 -AID--HIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 538 -~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.|+ ...|...+......|+.+.+..+++++++
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 33677777777778888888888887764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-17 Score=165.13 Aligned_cols=363 Identities=13% Similarity=0.079 Sum_probs=308.7
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----CCChhHHHH
Q 008249 173 DHVIREMSEMRPSPNCATYNAFITGYCR----VNELDKALHLFSTMANNGIRPNRVTHNILVHALCK----KGLLGDAVK 244 (572)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~ 244 (572)
...++...+. .+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4445554443 366778888888888 899999999999998865 67788888888988 899999999
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHH
Q 008249 245 FLGEVLADDDGKATSDVITSTILMDSYFK----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL----NGDISSAF 316 (572)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 316 (572)
.|++..+.+ +...+..|...|.. .+++++|++.|++..+.| ++..+..+...|.. .+++++|+
T Consensus 101 ~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 101 WYKKAALKG------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999998854 45677888899988 889999999999999876 67788888888887 78999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHH
Q 008249 317 AYFCQMLKRGFLPDVITYNTLLNCLCK----QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI----HGDIVKAREF 388 (572)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 388 (572)
++|++..+.| +...+..+...|.. .++.++|.+.|+...+.| +...+..+...|.. .+++++|.+.
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998875 67788888888888 899999999999998865 56778888888886 7899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHH
Q 008249 389 LLSMLEKSVVPEPHIWNVIIDGYGR----CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG-----GSIFDAFSLK 459 (572)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~ 459 (572)
|++..+.+ ++..+..+...|.. .+++++|...|++..+.| +...+..+...|... +++++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99998874 56677778888877 899999999999998764 566777888888887 8999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 008249 460 KEMLLDGIFPDVFTYNLLIGASCNLG---HIHLALQLYDEMLRRGITPDIITYTELIKGHCA----RGNMKEAEEVFAKI 532 (572)
Q Consensus 460 ~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m 532 (572)
++..+.+ +...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999875 5567778888887766 7899999999999864 67888999999998 89999999999999
Q ss_pred HHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 008249 533 QTLGLAIDHIPFRILKKRYRR----MKESDKARDIHQKWLLRN 571 (572)
Q Consensus 533 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~ 571 (572)
.+.| +...+..|...|.. .++.++|...|++.++.+
T Consensus 394 ~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 394 AEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9875 56778889999988 899999999999998754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-17 Score=169.58 Aligned_cols=404 Identities=11% Similarity=0.024 Sum_probs=279.2
Q ss_pred HhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH-HHcCChhHHHH
Q 008249 96 ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNEL-CKIGDLEKADH 174 (572)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~~~~A~~ 174 (572)
+..+.+...++.... -.|.+...|..++..+.+.|++++|..+|++++... |+...|...+... ...|+.+.|.+
T Consensus 26 ~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 26 QPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHH
Confidence 345555555555431 245677899999999999999999999999999873 6888888777543 45688887765
Q ss_pred ----HHHHHhh-CCCC-CCHHHHHHHHHHHHh---------cCCHhHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhC
Q 008249 175 ----VIREMSE-MRPS-PNCATYNAFITGYCR---------VNELDKALHLFSTMANNGIRPNR---VTHNILVHALCKK 236 (572)
Q Consensus 175 ----~~~~~~~-~~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~ 236 (572)
+|++... .|.. ++...|...+....+ .|++++|..+|++..+. |.. ..|..........
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhh
Confidence 6666654 2333 356788888877665 78999999999999873 332 2333332211111
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHH
Q 008249 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDM------FQKN---IQTD--------IVAY 299 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~---~~~~--------~~~~ 299 (572)
|. ..+.. ++. .+.++++.|..++..+ .+.. ++|+ ...|
T Consensus 179 ~~-~~~~~----------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 179 NI-HLAKK----------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp CH-HHHHH----------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred ch-hHHHH----------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 10 00111 110 1223455565555542 2221 2333 2345
Q ss_pred HHHHHHHHhC----CCH----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH-------cCCHH-------HHHHHHHHH
Q 008249 300 NVLINGFCLN----GDI----SSAFAYFCQMLKRGFLPDVITYNTLLNCLCK-------QGKLD-------EASHFYGVL 357 (572)
Q Consensus 300 ~~li~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~~ 357 (572)
...+...... ++. +.+..+|++.... .+.+...|...+..+.+ .|+++ +|..++++.
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 4444332221 222 4677888888875 23456777777777765 68877 899999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 358 SKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPE-PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV 436 (572)
Q Consensus 358 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 436 (572)
.+.-.+.+...|..++..+.+.|++++|..+|+++.+..+. + ...|..++..+.+.|++++|..+|++..+.... +.
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~ 390 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RH 390 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CT
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-ch
Confidence 86323446888999999999999999999999999986433 3 357888888888999999999999999875332 33
Q ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHH
Q 008249 437 FTFNALIL-AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG-ITPD--IITYTEL 512 (572)
Q Consensus 437 ~~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l 512 (572)
..|..... .+...|++++|..+|+...+... -+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 33332222 23468999999999999887532 257889999999999999999999999999863 2232 3478888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 008249 513 IKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+......|+.+.+..+.+++.+.
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888999999999999999876
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-19 Score=169.73 Aligned_cols=199 Identities=10% Similarity=0.022 Sum_probs=84.1
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
.++..+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|...++++.+..| .+...|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 333444444444444444444444444444432 22333334444444444444444444444444333 2333444444
Q ss_pred HHHHhcC-CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 196 TGYCRVN-ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 196 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
..+...| ++++|.+.|++..... +.+...+..+...+...|++++|.+.++++++..+ .+...+..+...|...
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK----GCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT----TCSHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHH
Confidence 4444444 4444444444444332 11233344444444444444444444444444332 2233333344444444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQM 322 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 322 (572)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++.
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44444444444444332 223334444444444444444444444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-18 Score=168.63 Aligned_cols=295 Identities=12% Similarity=0.015 Sum_probs=252.2
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHH
Q 008249 149 TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNI 228 (572)
Q Consensus 149 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 228 (572)
.+.+...+..+...+...|++++|.++|+++.+..| .+...+..++..+...|++++|..+++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 356778888999999999999999999999998776 456677788889999999999999999998864 336788899
Q ss_pred HHHHHHhCC-ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 229 LVHALCKKG-LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307 (572)
Q Consensus 229 ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (572)
+...+...| ++++|.+.|++++...+ .+...|..+...+...|++++|++.++++.+.. +.+...+..+...+.
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK----TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT----TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Confidence 999999999 99999999999999776 677889999999999999999999999999875 445677888999999
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHHc
Q 008249 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG--------VAPDQISYKTIIQGLCIH 379 (572)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~ 379 (572)
..|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. .+.+..++..+...+...
T Consensus 171 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998863 4467889999999999999999999999887642 133467899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE-TRGGSIF 453 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~g~~~ 453 (572)
|++++|...+++..+.... +...+..+...+...|++++|...+++..+..+ .+...+..+..++ ...|+.+
T Consensus 250 g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence 9999999999999987644 678899999999999999999999999887643 3677888888877 4556543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.4e-19 Score=171.83 Aligned_cols=306 Identities=12% Similarity=-0.019 Sum_probs=147.8
Q ss_pred CChhHHHH-HHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 008249 237 GLLGDAVK-FLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (572)
Q Consensus 237 g~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 315 (572)
|++++|.. .+++.+...+..+..+...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 44555554 44444433321111123344455555555555555555555555443 33444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (572)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (572)
...|+++.+.. +.+..++..+...+...|++++|...++.+.+.... +...+..+... ..
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~----------- 177 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG----------- 177 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------------------------
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-----------
Confidence 55555555432 223445555555555555555555555555543211 11111100000 00
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008249 396 SVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS-NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTY 474 (572)
Q Consensus 396 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 474 (572)
... ....+..+...+ ..|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+.. +.+...|
T Consensus 178 ~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 178 GAG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 000 000011111122 4555555555555555432211 35555566666666666666666666655532 1135566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------ChHHH
Q 008249 475 NLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI----------DHIPF 544 (572)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~~~ 544 (572)
..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+..... ...+|
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 333 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 333 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence 666666666666666666666666542 3345666666666666666666666666665531100 14566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 008249 545 RILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..++.+|...|+.++|..++++.
T Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 334 STLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHhCChHhHHHhHHHH
Confidence 66777777777777766665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=171.04 Aligned_cols=304 Identities=13% Similarity=0.043 Sum_probs=175.0
Q ss_pred cCCHhHHHH-HHHHHHHCCC-CC--CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 201 VNELDKALH-LFSTMANNGI-RP--NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 201 ~g~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.|++++|.+ .|++...... .| +...+..+...+...|++++|...|+++++..+ .+..++..+...+...|+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP----KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCcC
Confidence 466666666 6665443211 11 234566677777777777777777777777654 566777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 008249 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGV 356 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (572)
+++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..+... ...
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~------ 178 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG------ 178 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh------
Confidence 777777777777664 456677777777777777777777777777765311 11111111000 000
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008249 357 LSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP-EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (572)
Q Consensus 357 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 435 (572)
..+. ..+..+. .+...|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+..+ .+
T Consensus 179 -----~~~~-~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~ 250 (368)
T 1fch_A 179 -----AGLG-PSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-ND 250 (368)
T ss_dssp -------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred -----hccc-HHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CC
Confidence 0000 0111111 1225566666666666665543221 355566666666666666666666666655432 24
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------
Q 008249 436 VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITP----------- 504 (572)
Q Consensus 436 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------- 504 (572)
..++..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|...|+++.+.. +.
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccch
Confidence 56666666667777777777777776665421 245666677777777777777777777766531 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 505 DIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 505 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
...+|..+..+|...|+.++|..++++..
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 14677777777777777777777766443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-16 Score=160.26 Aligned_cols=385 Identities=9% Similarity=-0.074 Sum_probs=218.0
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC----
Q 008249 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEM--------RPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG---- 218 (572)
Q Consensus 151 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---- 218 (572)
.....|+.|...+...|++++|++.|++..+. .......+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888899999999988876542 112345678888888888889988888888775421
Q ss_pred --CC-CCHhHHHHHHHHHHhC--CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhC
Q 008249 219 --IR-PNRVTHNILVHALCKK--GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY---FKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 219 --~~-p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 290 (572)
.. ....++..+..++... +++++|.+.|+++++..+ .++..+..+...+ ...++.++|++.+++..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p----~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP----KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 11 1345566665555543 467888888888888765 5566666555553 3456777888888877766
Q ss_pred CCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 291 NIQTDIVAYNVLINGFCL----NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQ 366 (572)
Q Consensus 291 ~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 366 (572)
+ +.+...+..+...+.. .|++++|.+.+++..... +.+...+..+...|.+.|++++|...+++..+.. +.+.
T Consensus 205 ~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 205 N-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp C-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred C-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 4 4455666655555444 356777888888777652 3356677778888888888888888888877752 3345
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008249 367 ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE 446 (572)
Q Consensus 367 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 446 (572)
.++..+...|...+.... ... ...........+.++.|...++...+..+. +..++..+...|
T Consensus 282 ~~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~ 344 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHH
Confidence 566666555532211000 000 000000011112345566666665553322 344556666667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008249 447 TRGGSIFDAFSLKKEMLLDGIFPDVF--TYNLLIG-ASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMK 523 (572)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 523 (572)
...|++++|...|++..+....|... .+..+.. .....|++++|+..|++..+. .|+....... .+
T Consensus 345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~ 413 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KD 413 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HH
T ss_pred HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HH
Confidence 77777777777777766643332211 1222222 223566777777777776663 4443322211 23
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 524 EAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 524 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
.+.+++++..+.. +.+..+|..++..|...|++++|.+.|++.++.+
T Consensus 414 ~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 414 KLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3344455554442 3355567777777777777777777777776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-17 Score=164.28 Aligned_cols=265 Identities=12% Similarity=0.054 Sum_probs=188.7
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|..+...+.+.|++++|+..|+.+++.. +.+..++..+...|.+.|++++|+..|+++.+..| .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45568888999999999999999999998864 45778889999999999999999999999988765 46788999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCC-H----------hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPN-R----------VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (572)
.|...|++++|.+.|+++.+.. |+ . ..+..+...+...|++++|.+.+++++...+.. .+..++.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 217 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM--IDPDLQT 217 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS--CCHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc--cCHHHHH
Confidence 9999999999999999987742 22 1 222334677778888888888888888766521 2677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC
Q 008249 266 ILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG 345 (572)
Q Consensus 266 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 345 (572)
.+...|...|++++|++.|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+..++..+...|.+.|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 88888888888888888888877764 4567777778888888888888888887777652 234666777777777777
Q ss_pred CHHHHHHHHHHHHhCCCC-----------CCHhhHHHHHHHHHHcCCHHHHHHHH
Q 008249 346 KLDEASHFYGVLSKTGVA-----------PDQISYKTIIQGLCIHGDIVKAREFL 389 (572)
Q Consensus 346 ~~~~A~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~ 389 (572)
++++|...++++.+.... .+...|..+..++...|+.+.+.++.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 777777777776653210 01344555555555555555444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=162.88 Aligned_cols=277 Identities=14% Similarity=-0.006 Sum_probs=177.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008249 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLN 339 (572)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (572)
+...+..+...+.+.|++++|++.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 33445666666666666666666666666543 3455566666666666666666666666655542 223455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008249 340 CLCKQGKLDEASHFYGVLSKTGVAPDQ-ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLS 418 (572)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 418 (572)
.|...|++++|...++++.+.. |+. ..+..+. .....+..+...+...|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHH
Confidence 5555555555555555555431 111 1111100 01223445577778888888
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 419 NAFSIRDLMLSFGVS-SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 419 ~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
+|...++++.+..+. ++..++..+...+...|++++|...++++.+... .+..+|..+...|...|++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888775432 2577888888888888888888888888887532 25778888888888999999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 498 LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLA-----------IDHIPFRILKKRYRRMKESDKARDIHQK 566 (572)
Q Consensus 498 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (572)
.+.. +.+..+|..+..+|...|++++|.+.++++.+.... .+...|..+..++...|+.+.+....++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8752 445788888888999999999999999988765211 0256788888889999999888877665
Q ss_pred H
Q 008249 567 W 567 (572)
Q Consensus 567 ~ 567 (572)
-
T Consensus 353 ~ 353 (365)
T 4eqf_A 353 D 353 (365)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=160.14 Aligned_cols=238 Identities=11% Similarity=0.083 Sum_probs=65.2
Q ss_pred CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 008249 131 GGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHL 210 (572)
Q Consensus 131 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (572)
.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...
T Consensus 16 ~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 35566666666555 23345666666666666666666666442 3444556666666666666666665
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 211 FSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 211 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
++..++. .+++.+.+.++.+|.+.|+++++.++++ . |+..+|+.++..|...|.+++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------G--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT--------C--C----------------CTTTHHHHHHHT---
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 5444432 3344555556666666666666555542 1 34445666666666666666666666544
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 008249 291 NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYK 370 (572)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 370 (572)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 24555556666666666666555554 14555555556666666655553332221 11222233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 371 TIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413 (572)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 413 (572)
.++..|.+.|.+++|..+++...... +.....|+-+..+|++
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 45555555555555555555555443 2234444444444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-16 Score=159.05 Aligned_cols=387 Identities=11% Similarity=-0.067 Sum_probs=259.7
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhC--------CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC--
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQK--------GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR-- 183 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 183 (572)
.+.....||.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445567999999999999999999999987642 112345688999999999999999999999876521
Q ss_pred ---C--CCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH---HHhCCChhHHHHHHHHHHhCC
Q 008249 184 ---P--SPNCATYNAFITGYCRV--NELDKALHLFSTMANNGIRPNRVTHNILVHA---LCKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 184 ---~--~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~ 253 (572)
+ .....++.....++... +++++|++.|++..+... -++..+..+..+ +...++.++|.+.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 12345666666555554 579999999999987632 245555555544 456788899999999999977
Q ss_pred CCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 008249 254 DGKATSDVITSTILMDSYFK----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLP 329 (572)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 329 (572)
+ .+..++..+...+.. .|+.++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +-
T Consensus 206 p----~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 279 (472)
T 4g1t_A 206 P----DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PN 279 (472)
T ss_dssp S----SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred C----cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CC
Confidence 6 677777777666655 467789999999988775 6678889999999999999999999999998863 23
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID 409 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 409 (572)
+..++..+...|...+.... ... . ..........+..+.|...+++..+..+. +...+..+..
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~ 342 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILAS 342 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHH
Confidence 45666666655543211111 100 0 00011111223467888888888876544 5667888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVF--TFNALIL-AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH 486 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 486 (572)
.|...|++++|...|++..+....+... .+..+.. .....|++++|+..|++..+. .|+..... +.
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~ 411 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KM 411 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HH
Confidence 9999999999999999988765443321 2223322 345678999999999998874 45533222 22
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008249 487 IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 487 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
...+..+++...+.. +.+..+|..+..+|...|++++|++.|+++.+.|
T Consensus 412 ~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344555666666543 6677899999999999999999999999999864
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-17 Score=156.69 Aligned_cols=282 Identities=10% Similarity=-0.050 Sum_probs=187.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008249 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLN 339 (572)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (572)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33445566666666677777777776666553 3455566666666666666666666666666542 224555555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHhcCCH
Q 008249 340 CLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVI-ID-GYGRCGDL 417 (572)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~ 417 (572)
.+...|++++|...++.+.+... .+...+..+... .|+......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 66666666666666666655421 111122111000 0011111112 22 36677888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 418 SNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 418 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
++|...++++.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888775433 677888888888889999999999988887532 25778888899999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 498 LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-----------DHIPFRILKKRYRRMKESDKARDIHQK 566 (572)
Q Consensus 498 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (572)
.+.. +.+..++..+...|...|++++|.+.++++.+..... +...|..+..++.+.|+.++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8753 4567888899999999999999999999988763221 356788899999999999999988876
Q ss_pred HHh
Q 008249 567 WLL 569 (572)
Q Consensus 567 ~l~ 569 (572)
.++
T Consensus 312 ~l~ 314 (327)
T 3cv0_A 312 NVE 314 (327)
T ss_dssp CSH
T ss_pred HHH
Confidence 543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-17 Score=157.58 Aligned_cols=265 Identities=10% Similarity=-0.056 Sum_probs=174.8
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++++.+..+ .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44567788888999999999999999988763 44677888888999999999999999999988765 46788888899
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH--------------HH-HHHhCCChhHHHHHHHHHHhCCCCCCCccH
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNIL--------------VH-ALCKKGLLGDAVKFLGEVLADDDGKATSDV 261 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 261 (572)
.+...|++++|.+.++++...... +...+..+ .. .+...|++++|.+.++++++..+ .+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~ 172 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP----NDA 172 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST----TCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC----CCH
Confidence 999999999999999998875322 22333332 11 24555666777777777666554 556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008249 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCL 341 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 341 (572)
..+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 666666666666777777777666666553 3445566666666666666666666666665542 22345555555666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHHcCCHHHHHHHHH
Q 008249 342 CKQGKLDEASHFYGVLSKTGVAP-----------DQISYKTIIQGLCIHGDIVKAREFLL 390 (572)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 390 (572)
.+.|++++|.+.++.+.+..... +...+..+...+.+.|+.++|..+++
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66666666666665555432110 23445555555555555555555444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=160.10 Aligned_cols=268 Identities=12% Similarity=0.085 Sum_probs=133.2
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
+++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++..++. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 44569999999999999999999999652 57789999999999999999999988777664 34577889999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..++.++.+.|
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLG 162 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------------TCHHHHHHHHHTTT
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhc
Confidence 99999999999998884 367789999999999999999999999866 25899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|.+++|..+++
T Consensus 163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998 27899999999999999999996655442 2233445578899999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 356 VLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK-SVVP------EPHIWNVIIDGYGRCGDLSNAFSI 423 (572)
Q Consensus 356 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 423 (572)
...... +.....|+-+.-.|++- ++++..+.++...++ +++| +...|.-++-.|...++++.|...
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 998764 55677888887777654 344444444433322 2222 355688888888888898888763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-14 Score=154.04 Aligned_cols=379 Identities=14% Similarity=0.124 Sum_probs=289.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGT--VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (572)
-...+.+|...|.+.+|++++++..-.+- .-+...-+.++....+. +..+..+..++.... + ..-+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 35678889999999999999999884421 13445666677777666 556665655555321 1 33467788
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.+++ .+..+|..+..++...|+++
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCHH
Confidence 88999999999999962 12222333332 778899999999865 55778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 358 (572)
+|++.|.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 999999664 478889999999999999999999998877654 33333445889999999988644442
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 359 KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFT 438 (572)
Q Consensus 359 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 438 (572)
+ .++...|..+...|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 2 346677788999999999999999999985 36999999999999999999999876 36789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008249 439 FNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA 518 (572)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 518 (572)
|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|+-+...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999999998877643 3366677899999999999999999998887543 3344677777777776
Q ss_pred c--CCHHHHHHHHHHHHHcCCCC------ChHHHHHHHHHHHhcCCHHHHHH
Q 008249 519 R--GNMKEAEEVFAKIQTLGLAI------DHIPFRILKKRYRRMKESDKARD 562 (572)
Q Consensus 519 ~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~ 562 (572)
. ++..++.++|..-. +++| +...|.-++-.|.+.|+++.|..
T Consensus 1327 y~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred CCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4 34444444444222 2222 45679999999999999999984
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-14 Score=151.24 Aligned_cols=348 Identities=12% Similarity=0.065 Sum_probs=238.1
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
.+....+.|+....+. +..+...+.+++... + ..-+...+...|.+++|..+|++.. -.....+.++
T Consensus 1020 ~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi 1086 (1630)
T 1xi4_A 1020 EHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI 1086 (1630)
T ss_pred ccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH
Confidence 3455666677766666 446666665555422 1 3336677788888888888888852 2222233333
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
. ..+++++|.++.++.. ++.+|..+..++.+.|++++|.+.|.+. .+...|..++..+.+.|
T Consensus 1087 e---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lG 1148 (1630)
T 1xi4_A 1087 E---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSG 1148 (1630)
T ss_pred H---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcC
Confidence 2 6677888888877552 4677888888888888888888888654 56677788888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
++++|.+.+....+.. +++...+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|.
T Consensus 1149 kyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1149 NWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred CHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8888888888777654 33333345778888888877533332 2 3455667778888888888888888887
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008249 356 VLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (572)
Q Consensus 356 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 435 (572)
.. ..|..+...|++.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..+
T Consensus 1220 kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~ 1279 (1630)
T 1xi4_A 1220 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 1279 (1630)
T ss_pred hh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcC
Confidence 74 37888888888888888888888876 25677888888888888888777765432 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHH
Q 008249 436 VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN--LGHIHLALQLYDEMLRRGITP------DII 507 (572)
Q Consensus 436 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p------~~~ 507 (572)
...+..++..|.+.|.+++|+.+++...... .-....|+-|...+++ -++..++.++|..-.. ++| +..
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAH 1356 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHH
Confidence 6667788888888888888888887776543 2234556666666654 3344455555543222 333 446
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 008249 508 TYTELIKGHCARGNMKEAE 526 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~ 526 (572)
.|..++..|.+.|+++.|.
T Consensus 1357 lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHhcccHHHHH
Confidence 6888888888888888777
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-16 Score=146.52 Aligned_cols=272 Identities=12% Similarity=0.027 Sum_probs=162.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 008249 271 YFKNGDKFQALALWNDMFQKNIQTD--IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLD 348 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 348 (572)
....|++..|+..++..... .|+ ......+.++|...|++++|+..++. .-+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44556666666655554332 122 12334455666666666666654433 12445555666666666666666
Q ss_pred HHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 349 EASHFYGVLSKTGVAP-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLM 427 (572)
Q Consensus 349 ~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 427 (572)
+|.+.++.+...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554323 344455555666666666666666665 235566666667777777777777777776
Q ss_pred HhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008249 428 LSFGVSSNVFTF---NALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITP 504 (572)
Q Consensus 428 ~~~~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 504 (572)
.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+.. +.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 6643 332111 122233344577777888887777652 3367777777777888888888888888877653 44
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008249 505 DIITYTELIKGHCARGNMKE-AEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDI 563 (572)
Q Consensus 505 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 563 (572)
+..++..++..+...|+.++ +.++++++.+. .|+.... .+...+.+.++++..-
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHHHHHHHH
Confidence 66777777777777777765 46777777775 4544322 2334455555555443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-16 Score=147.26 Aligned_cols=254 Identities=11% Similarity=0.020 Sum_probs=208.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 008249 303 INGFCLNGDISSAFAYFCQMLKRGFLPDV--ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (572)
Q Consensus 303 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (572)
++-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999998876543 3443 3456678899999999999986644 24567788899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 381 DIVKAREFLLSMLEKSVVP-EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLK 459 (572)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (572)
+.++|++.++++...+..| ++..+..+...+...|++++|...+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999876444 566777888999999999999999987 467889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008249 460 KEMLLDGIFPDVFTY---NLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 460 ~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|.+.++++.+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999864 553221 22334455569999999999999987 47788999999999999999999999999999873
Q ss_pred CCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCC
Q 008249 537 LAIDHIPFRILKKRYRRMKESDK-ARDIHQKWLLRNK 572 (572)
Q Consensus 537 ~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~l~~~~ 572 (572)
+-+..++..++..+...|+.++ +.++++++++.++
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3367789999999999999976 6789999987653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=177.92 Aligned_cols=119 Identities=12% Similarity=0.080 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLS---FGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLL 477 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 477 (572)
..+|+++|++||+.|++++|..+|++|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44677777777777777777777766543 366777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008249 478 IGASCNLGH-IHLALQLYDEMLRRGITPDIITYTELIKGHCAR 519 (572)
Q Consensus 478 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 519 (572)
|+++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 777777776 356677777777777777777777776554443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-18 Score=177.42 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008249 433 SSNVFTFNALILAETRGGSIFDAFSLKKEMLL---DGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITY 509 (572)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 509 (572)
..-..|||++|++|++.|++++|.++|.+|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33467999999999999999999999988764 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 008249 510 TELIKGHCARGNM-KEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKES 557 (572)
Q Consensus 510 ~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 557 (572)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.+..+.+-+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL 252 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH
Confidence 9999999999985 78999999999999999999999888776665433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=8e-15 Score=135.67 Aligned_cols=226 Identities=12% Similarity=0.091 Sum_probs=179.8
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--C----HHHH
Q 008249 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSP--N----CATY 191 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 191 (572)
...|..+...+...|++++|...|+++.+.. .+..++..+...+...|++++|...+++..+..+.. + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4568888889999999999999999988876 778888999999999999999999999887754422 1 5788
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 192 NAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
..+...+...|++++|...|++.... .|+. ..+...|++++|...++.+....+ .+...+..+...+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP----EKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc----chHHHHHHHHHHH
Confidence 88888889999999999999988874 3443 345566778888888888888665 6778888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 008249 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS 351 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 351 (572)
...|++++|.+.|++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88888888888888888765 4567778888888888888888888888877753 334667777777788888888888
Q ss_pred HHHHHHHhC
Q 008249 352 HFYGVLSKT 360 (572)
Q Consensus 352 ~~~~~~~~~ 360 (572)
..++...+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 877777654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.7e-15 Score=148.50 Aligned_cols=347 Identities=13% Similarity=-0.027 Sum_probs=186.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh---hHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008249 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDL---EKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
.+...+.+.|++++|.++|++..+.| ++.++..|...|...|+. ++|...|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677788888899999888888765 455566677777777777 7888888887653 4455666666455
Q ss_pred hcC-----CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhH---HHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 200 RVN-----ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGD---AVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 200 ~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
..+ ++++|...|++..+.|. ...+..|...|...+..++ +.+.+......+ +...+..|...|
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g------~~~a~~~Lg~~y 151 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG------YPEAGLAQVLLY 151 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT------CTTHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC------CHHHHHHHHHHH
Confidence 544 67788888888887653 2266667777776665443 344444443322 234556666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc----
Q 008249 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNG---DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ---- 344 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---- 344 (572)
...+.++++......+.+.-...++..+..+...|...| +.++|+++|++..+.| .++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 776644333333222222111223336667777777777 7777777777777665 23444444555555443
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----C
Q 008249 345 GKLDEASHFYGVLSKTGVAPDQISYKTIIQG-L--CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCG-----D 416 (572)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 416 (572)
+++++|..+|+... . -+...+..+... + ...+++++|.+.|++..+.| ++..+..+...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 56777777777665 2 244455555554 2 34666777777777766654 4555555655555 33 6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 008249 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETR----GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIH 488 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~ 488 (572)
+++|...|++.. . -+...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+++
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHH
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHH
Confidence 666666666555 2 244555555555544 2366666666666665542 2233344444442 34566
Q ss_pred HHHHHHHHHHHCC
Q 008249 489 LALQLYDEMLRRG 501 (572)
Q Consensus 489 ~A~~~~~~m~~~g 501 (572)
+|...|+...+.|
T Consensus 376 ~A~~~~~~A~~~g 388 (452)
T 3e4b_A 376 NAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCC
Confidence 6666666666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=7e-15 Score=147.89 Aligned_cols=378 Identities=14% Similarity=0.029 Sum_probs=235.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008249 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL---DKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
+...+.+.|++++|.++|++..+.+. ...+..+...|...|+. ++|.+.|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 56667778889999999988877552 34455566666667777 8888888888753 45556666665555
Q ss_pred CC-----ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 236 KG-----LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF---QALALWNDMFQKNIQTDIVAYNVLINGFC 307 (572)
Q Consensus 236 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (572)
.+ +.++|...|++..+.+. ++ .+..|...|...+..+ ++.+.+......| ++..+..+...|.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~----~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE----GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC----SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC----HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 54 67888999988888664 33 6677777777665433 3445555555444 4556667777777
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc----C
Q 008249 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG---KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH----G 380 (572)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 380 (572)
..+.++++......+.+.-...+...+..+...|...| +.++|.+.|+...+.| +++...+..+...|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 77755544444333322211223337777888888888 8888888888888876 34555556666666544 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CH
Q 008249 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDG-Y--GRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG-----SI 452 (572)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~ 452 (572)
+.++|++.|++.. . -++..+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 8889999998887 3 255566666666 4 46788999999998888765 5667777777776 44 88
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 008249 453 FDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA----RGNMKE 524 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~ 524 (572)
++|...|++.. . -+...+..|...|.. ..++++|...|++..+.| +......|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHH
Confidence 89998888877 3 256667777777765 348889999999888766 34455566666663 458888
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 525 AEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 525 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
|..+|++..+.|.. +.......+......++.++|.++.+++.+
T Consensus 377 A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 377 AYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999888887632 222222222222334466777777777654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-14 Score=133.83 Aligned_cols=226 Identities=13% Similarity=0.057 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC----HhhH
Q 008249 296 IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA--PD----QISY 369 (572)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 369 (572)
...+..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...++...+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777888888888888888888887775 66777888888888888888888888877664211 11 4667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG 449 (572)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 449 (572)
..+...+...|++++|.+.++++.+.. |+. ..+...|++++|...++.+....+ .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 777777778888888888888777643 332 345556677777777777766432 2455666777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVF 529 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 529 (572)
|++++|...++++.+... .+...|..+...+...|++++|...++++.+.. +.+...|..+..++...|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777777776532 246667777777777777777777777777653 445667777777777777777777777
Q ss_pred HHHHHc
Q 008249 530 AKIQTL 535 (572)
Q Consensus 530 ~~m~~~ 535 (572)
+++.+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=130.32 Aligned_cols=198 Identities=13% Similarity=-0.065 Sum_probs=128.2
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443 (572)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 443 (572)
++...+..+...+.+.|++++|...|++..+..+. ++..+..+...+.+.|++++|...+++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 44555666666666666666666666666665443 5566666666666666666666666666654332 455666666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008249 444 LAETRG-----------GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTEL 512 (572)
Q Consensus 444 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 512 (572)
..+... |++++|...+++..+..+. +...+..+...+...|++++|+..|+++.+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 8888888888887775322 46677778888888888888888888888765 677778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 513 IKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..+|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888888888888888888762 235566777888888888888888877764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-14 Score=129.57 Aligned_cols=194 Identities=15% Similarity=0.078 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 008249 155 THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC 234 (572)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 234 (572)
.+..+...+.+.|++++|...|++..+..| .+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 333333344444444444444444433333 233333344444444444444444444433321 112333333333333
Q ss_pred hC-----------CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 235 KK-----------GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (572)
Q Consensus 235 ~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 303 (572)
.. |++++|...++++++..+ .+...+..+...+...|++++|++.|++..+.. .++..+..+.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNP----RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 33 555555555555555443 445555555555555555555555555555544 4455555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008249 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (572)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 357 (572)
..+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555555555555431 223444445555555555555555555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-12 Score=122.60 Aligned_cols=224 Identities=14% Similarity=-0.037 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 008249 295 DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK----QGKLDEASHFYGVLSKTGVAPDQISYK 370 (572)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 370 (572)
++.++..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777777888888888888888887773 245666777777777 888888888888877764 667777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 371 TIIQGLCI----HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR----CGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442 (572)
Q Consensus 371 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 442 (572)
.+...|.. .+++++|++.+++..+.+ ++..+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888877764 66677777777777 788888888888777754 45566667
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 443 ILAETR----GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 443 l~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777766 777888888877777653 45666677777777 777888888777777753 2566667777
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 008249 515 GHCA----RGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 515 ~~~~----~g~~~~A~~~~~~m~~~g 536 (572)
.|.. .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777 777777777777777764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=126.83 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=151.8
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+..+ .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 5677888888888888888888888887753 44667778888888888888888888888877655 366777788888
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 198 YCRVNELDKALHLFSTMANNGIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
+...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++++..+ .+...+..+...+...|+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR----NQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHcCC
Confidence 888888888888888887632333 455667777777888888888888888777654 567777777788888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888887777654 455666777777777777777777777777665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-14 Score=131.25 Aligned_cols=196 Identities=10% Similarity=0.070 Sum_probs=88.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--CHHHHHHHHHHH
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSP--NCATYNAFITGY 198 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~ 198 (572)
+......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|+..+++..+....+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444455555555555555555555442 2233345555555555555555555555555422111 122344455555
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
...|++++|.+.|++..+.. +.+..++..+...+...|++++|.+.++++++..+ .+...+..+...+...++++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT----TDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC----CCHHHHHHHHHHHHHTTCHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC----CcHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554432 11334444444455555555555555554444332 34444444442222223444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHH
Q 008249 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGD---ISSAFAYFCQML 323 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~ 323 (572)
+|.+.|+++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 4444444444432 2223333334444444343 334444444433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-11 Score=128.92 Aligned_cols=428 Identities=10% Similarity=0.020 Sum_probs=269.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC---hhHHHHHHHHHhhCCC-CCCHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD---LEKADHVIREMSEMRP-SPNCAT 190 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~ 190 (572)
+-|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.|+ ++.+..+|++.....+ .|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 468899999999999999999999999999987 46677888889998888898 9999999999988662 378889
Q ss_pred HHHHHHHHHhcCCH--------hHHHHHHHHHHH-CCC-CCC-HhHHHHHHHHHHh---------CCChhHHHHHHHHHH
Q 008249 191 YNAFITGYCRVNEL--------DKALHLFSTMAN-NGI-RPN-RVTHNILVHALCK---------KGLLGDAVKFLGEVL 250 (572)
Q Consensus 191 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 250 (572)
|...+....+.++. +...++|+.... .|. .|+ ...|...+..... .++++.+..+|+.++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 98888777665553 344578877654 465 554 4677777765442 345778999999998
Q ss_pred hCCCCCCCccHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----CCC----------------
Q 008249 251 ADDDGKATSDVITSTILMDSYFK-------------NGDKFQALALWNDMFQ--KNI----QTD---------------- 295 (572)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~--~~~----~~~---------------- 295 (572)
.... . .-..+|......--. ..+++.|...+.++.. .++ +..
T Consensus 222 ~iP~-~--~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 222 CQPM-D--CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp TSCC-S--SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred hCcc-H--HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 6432 1 223344332222111 1123334444444321 111 100
Q ss_pred ---HHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCC
Q 008249 296 ---IVAYNVLINGFCLNG-------DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS-HFYGVLSKTGVAP 364 (572)
Q Consensus 296 ---~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~ 364 (572)
...|...+.---..+ ..+.+..+|+++... ++-+...|...+..+.+.|+.++|. .+|+..... ++.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC
Confidence 123444433222221 123345667776654 3445666666677677777777775 888877764 445
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHH
Q 008249 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKS---------VVPE------------PHIWNVIIDGYGRCGDLSNAFSI 423 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~ 423 (572)
+...|-..+....+.|++++|.++|+++.+.. ..|+ ...|...+....+.|+.+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666777777777888888888888776531 0121 23566667777777788888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008249 424 RDLMLSFGVSSNVFTFNALILAETRG-GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 424 ~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
|..+.+.........|...+..-.+. ++.+.|.++|+...+. ..-+...|...++.....|+.+.|..+|++......
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 88777641111223333222222233 4478888888877765 223455666777777777888888888888776531
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008249 503 TP--DIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 503 ~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
.+ ....|...+..-...|+.+.+..+.+++.+. .|+......+++-|
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 11 2356777777777788888888888888776 34444444444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-13 Score=123.17 Aligned_cols=203 Identities=13% Similarity=0.056 Sum_probs=136.6
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
.+...|..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|.+.++++.+..+ .+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 345667777777777788888888777777653 34566777777777777777777777777776554 3566677777
Q ss_pred HHHHhc-CCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 196 TGYCRV-NELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 196 ~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
..+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++++..+ .+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP----QFPPAFKELARTKML 159 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHH
Confidence 777777 777777777777766222222 45566666777777777777777777766554 556666677777777
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 274 NGDKFQALALWNDMFQKNIQ-TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
.|++++|.+.++++.+.. + .+...+..+...+...|+.+++..+++.+.+.
T Consensus 160 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777666553 2 45555666666666667777776666666543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-11 Score=127.51 Aligned_cols=433 Identities=6% Similarity=-0.030 Sum_probs=299.6
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---HhHHHHH
Q 008249 134 IGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE---LDKALHL 210 (572)
Q Consensus 134 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 210 (572)
..+.+..|++.+... +-|..+|..++..+.+.+.++.+..+|+++....| .....|...+..-.+.|+ ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445555666665553 56899999999999999999999999999999876 577889999999889898 9999999
Q ss_pred HHHHHHCC-CCCCHhHHHHHHHHHHhCCCh--------hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH---------
Q 008249 211 FSTMANNG-IRPNRVTHNILVHALCKKGLL--------GDAVKFLGEVLADDDGKATSDVITSTILMDSYF--------- 272 (572)
Q Consensus 211 ~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~--------~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 272 (572)
|++..... ..|+...|...+....+.++. +...++|+.++..-....+.+...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998763 137888888887766665543 344578887775322101256678888887654
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHH----------hCCCHHHHHHHHHHHHHC--CC----C-----
Q 008249 273 KNGDKFQALALWNDMFQKNIQTDIVAYNV---LINGFC----------LNGDISSAFAYFCQMLKR--GF----L----- 328 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---li~~~~----------~~g~~~~a~~~~~~m~~~--g~----~----- 328 (572)
..++++.+..+|+.+.......-..+|.. +-.... ....++.|...+.++... ++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34457889999999885321111233322 111110 011233445555443321 11 1
Q ss_pred ------C-----C---HhHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHH-
Q 008249 329 ------P-----D---VITYNTLLNCLCKQG-------KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAR- 386 (572)
Q Consensus 329 ------p-----~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~- 386 (572)
| + ...|...+..--..+ ..+.+..+|++.... ++-+...|-..+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 123333333222221 123455678888775 4557888888898888999999997
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHH
Q 008249 387 EFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV---------SSN------------VFTFNALILA 445 (572)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~p~------------~~~~~~ll~~ 445 (572)
++|++..... +.+...|...+....+.|++++|..+|+.+..... .|+ ...|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999998753 34667788888889999999999999999876310 131 3467777887
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 446 ETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNL-GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
..+.|+.+.|..+|.++.+....+....|...+..-.+. ++++.|..+|+...+. .+-+...|...+......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 788899999999999998761111233343333333344 4599999999999986 45577778889998889999999
Q ss_pred HHHHHHHHHHcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 525 AEEVFAKIQTLGLAI--DHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 525 A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
|..+|+++......+ ....|..+++.-.+.|+.+.+..+.+++.+..
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999873222 23468888888889999999999999997653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-13 Score=127.63 Aligned_cols=253 Identities=15% Similarity=0.072 Sum_probs=201.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HhHHHHH
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN--RVTHNIL 229 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l 229 (572)
|+..+......+...|++++|+..|++..+..| .+...+..+...+...|++++|++.+++..+.+..|+ ...|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 344566778889999999999999999999876 3566888999999999999999999999988432222 2348889
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 008249 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (572)
Q Consensus 230 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (572)
...+...|++++|.+.|+++++..+ .+..++..+...|...|++++|++.|++..+.. +.+...|..+...+...
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDT----TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST----TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCc----ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999776 677899999999999999999999999998874 55677787777344456
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC---HHHHHHHHHHHHhCC-CCCC------HhhHHHHHHHHHHc
Q 008249 310 GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGK---LDEASHFYGVLSKTG-VAPD------QISYKTIIQGLCIH 379 (572)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~ 379 (572)
+++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...++...+.. ..|+ ..+|..+...|...
T Consensus 156 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 69999999999998863 3346777788888888888 888988888876642 1133 25788899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYG 412 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 412 (572)
|++++|.+.++++.+..+. ++..+..+.....
T Consensus 235 ~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPT-NKKAIDGLKMKLE 266 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHhcCcc-HHHHHHHhhhhhc
Confidence 9999999999999987644 5666655544433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-13 Score=124.91 Aligned_cols=201 Identities=11% Similarity=-0.092 Sum_probs=145.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 331 VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG 410 (572)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 410 (572)
...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4566777777888888888888888777653 345677777777888888888888888887776443 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 411 YGRCGDLSNAFSIRDLMLSFGVSS-NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489 (572)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (572)
+...|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888887776632233 455667777777778888888888877776532 246677777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 490 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
|...++++.+.. +.+...+..+...+...|+.++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888887777642 455666777777777788888888888877775
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-13 Score=133.09 Aligned_cols=248 Identities=12% Similarity=0.059 Sum_probs=187.8
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD-LEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
+...|+.+...+.+.|++++|+..++++++.. +-+..+|+.+..++.+.|+ +++|+..|+++.+..| .+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 34578888888888899999999999988763 4467788888888989996 9999999999988777 4778888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh-c
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK-N 274 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 274 (572)
.++...|++++|+..|+++++... -+...|..+..++...|++++|+..++++++..+ .+...|+.+..++.. .
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P----~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV----RNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhc
Confidence 889899999999999999887642 3677888888888889999999999999988776 788888888888888 5
Q ss_pred CCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC--
Q 008249 275 GDKFQA-----LALWNDMFQKNIQTDIVAYNVLINGFCLNG--DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG-- 345 (572)
Q Consensus 275 g~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-- 345 (572)
|..++| ++.+++..... +-+...|+.+...+...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcc
Confidence 554666 47777777664 456677877777777777 577888888776 32 2345666777777777763
Q ss_pred -------CHHHHHHHHHHH-HhCCCCCC-HhhHHHHHHHH
Q 008249 346 -------KLDEASHFYGVL-SKTGVAPD-QISYKTIIQGL 376 (572)
Q Consensus 346 -------~~~~A~~~~~~~-~~~~~~~~-~~~~~~li~~~ 376 (572)
..++|.++++.+ .+. .|. ...|..+...+
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 247777788777 553 232 34444444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-12 Score=119.91 Aligned_cols=225 Identities=12% Similarity=-0.009 Sum_probs=156.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHhHH
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL----NGDISSAFAYFCQMLKRGFLPDVITY 334 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (572)
.+..++..+...+...|++++|++.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45556666667777777777777777776663 244566666666666 777777777777776654 55666
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008249 335 NTLLNCLCK----QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI----HGDIVKAREFLLSMLEKSVVPEPHIWNV 406 (572)
Q Consensus 335 ~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 406 (572)
..+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666776 777777777777776653 56666677777777 777777777777777754 4556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 407 IIDGYGR----CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR----GGSIFDAFSLKKEMLLDGIFPDVFTYNLLI 478 (572)
Q Consensus 407 li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 478 (572)
+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6667766 777777777777777653 45666677777777 778888888888777753 255666777
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 008249 479 GASCN----LGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 479 ~~~~~----~g~~~~A~~~~~~m~~~g 501 (572)
..|.. .+++++|...|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 778888888888877754
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-13 Score=132.26 Aligned_cols=249 Identities=13% Similarity=0.043 Sum_probs=193.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE-LDKALHLFSTMANNGIRPNRVTHNILV 230 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll 230 (572)
+..+|..+...+.+.|++++|+..++++.+..| .+..+|+.+..++...|+ +++|+..|++...... -+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 345678888889999999999999999998877 478889999999999997 9999999999988643 2678889999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-C
Q 008249 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL-N 309 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~ 309 (572)
.++...|++++|+..|+++++..+ .+..+|..+..++.+.|++++|++.|+++++.. +.+...|+.+...+.. .
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP----~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA----KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc----cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999776 888999999999999999999999999999876 5678889888888888 5
Q ss_pred CCHHHH-----HHHHHHHHHCCCCCCHhHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--
Q 008249 310 GDISSA-----FAYFCQMLKRGFLPDVITYNTLLNCLCKQG--KLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG-- 380 (572)
Q Consensus 310 g~~~~a-----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 380 (572)
|..++| ++.|++.++.. +-+...|..+...+.+.| ++++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcc
Confidence 665777 47777777652 224667777777777777 577888877777 32 3445677777777777753
Q ss_pred -------CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 008249 381 -------DIVKAREFLLSM-LEKSVVPEPHIWNVIIDGY 411 (572)
Q Consensus 381 -------~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~ 411 (572)
..++|+++++++ .+.++. ....|..+...+
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 247788888887 554322 344455554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-14 Score=131.85 Aligned_cols=122 Identities=14% Similarity=-0.029 Sum_probs=59.9
Q ss_pred hCCChhhHHHHHHHHHhCCC---CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 008249 130 LGGKIGTALWLRRKMIQKGT---VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDK 206 (572)
Q Consensus 130 ~~g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 206 (572)
..|++++|+..|+.+.+... +.+..++..+...+...|++++|...|+++.+..| .+..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 34555555555555555421 11234445555555555555555555555555443 244455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 008249 207 ALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 207 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 253 (572)
|.+.|++..+.. +.+..++..+...+...|++++|.+.++++++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 555555554432 1134444445555555555555555555554433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-14 Score=131.83 Aligned_cols=118 Identities=11% Similarity=-0.100 Sum_probs=53.5
Q ss_pred CCHhHHHHHHHHHHHCCCC---CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008249 202 NELDKALHLFSTMANNGIR---PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
|++++|++.|+++.+.... .+..++..+...+...|++++|...|+++++..+ .+..++..+...|...|+++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHccCHH
Confidence 4444444444444443110 1233344444444445555555555554444333 34444444455555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
+|++.|+++.+.. +.+...+..+...+...|++++|...|+++.+
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555554444432 22344444444444444455555444444444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-13 Score=119.52 Aligned_cols=208 Identities=13% Similarity=-0.100 Sum_probs=146.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID 409 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 409 (572)
+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 45566777777888888888888888777653 335667777777788888888888888877765433 5667777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 410 GYGRC-GDLSNAFSIRDLMLSFGVSS-NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHI 487 (572)
Q Consensus 410 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 487 (572)
.+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 77778 88888888887777632223 256677777777777888888888777776532 2466777777777777888
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHH
Q 008249 488 HLALQLYDEMLRRGIT-PDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIP 543 (572)
Q Consensus 488 ~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 543 (572)
++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+. .|+...
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~ 217 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHH
Confidence 88888887777643 3 45666666777777777777777777777654 344443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-13 Score=126.98 Aligned_cols=203 Identities=14% Similarity=0.076 Sum_probs=141.4
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
......|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.+..+ .+...+..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 3455677888888888899999999888888753 44677888888888888888888888888887665 467778888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++++..+ .+...+..+...+...
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE----NDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHc
Confidence 888888888888888888887753 33667777788888888888888888888887654 6677778888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
|++++|++.|+++.+.. +.+..++..+...|...|++++|...++++.+.
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888888888877664 445667777777788888888888888777765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-13 Score=125.50 Aligned_cols=201 Identities=14% Similarity=0.031 Sum_probs=137.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID 409 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 409 (572)
....|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 45566677777888888888888888887753 346777777888888888888888888888776443 6677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (572)
.+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888776543 3567777777888888888888888888776532 256677777888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 490 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888888877653 445677778888888888888888888888776
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-13 Score=134.80 Aligned_cols=280 Identities=17% Similarity=0.106 Sum_probs=155.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CC
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI----VAYNVLINGFCLNGDISSAFAYFCQMLKR----GF-LP 329 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p 329 (572)
.....+..+...+...|++++|+..|+++.+.+ +.+. ..|..+...|...|++++|...+++..+. +. ..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 344555566777778888888888888777763 2232 35667777777778888888777776542 11 11
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHHcCC-----------------HHHHHH
Q 008249 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKTG-----VAPDQISYKTIIQGLCIHGD-----------------IVKARE 387 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~ 387 (572)
....+..+...|...|++++|...+++..+.. .+....++..+...|...|+ +++|.+
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 23455566666677777777777666654421 01112344445555555555 444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 388 FLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-SSNVFTFNALILAETRGGSIFDAFSLKKEMLLDG 466 (572)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 466 (572)
.+++..+.. . ..+. .....++..+...|...|++++|...+++..+..
T Consensus 205 ~~~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 205 FYQENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 444432210 0 0000 0112345555555666666666666665554321
Q ss_pred CC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 008249 467 IF-PD----VFTYNLLIGASCNLGHIHLALQLYDEMLRRG----IT-PDIITYTELIKGHCARGNMKEAEEVFAKIQTL- 535 (572)
Q Consensus 467 ~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 535 (572)
.. ++ ...+..+...+...|++++|...+++..+.. .. ....++..+...|...|++++|.+.++++.+.
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00 01 2255566666667777777777766665421 00 11345666667777777777777777766543
Q ss_pred ---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 536 ---GLAI-DHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 536 ---g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
+..+ ...++..+...|.+.|++++|.+.+++.++.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1235566666777777777777777776543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-13 Score=134.20 Aligned_cols=278 Identities=15% Similarity=0.064 Sum_probs=163.6
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHHhhC----CCC-
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD----VLTHNYLVNELCKIGDLEKADHVIREMSEM----RPS- 185 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~- 185 (572)
+.....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++..+. +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4556667778888888899999999999888763 223 356777888888889999888888876542 111
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhCCC--------------------hh
Q 008249 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGI-RPN----RVTHNILVHALCKKGL--------------------LG 240 (572)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~ 240 (572)
....++..+...+...|++++|...+++...... .++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2245677777888888888888888887754310 011 3366667777777777 77
Q ss_pred HHHHHHHHHHhCCCC--CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCCHH
Q 008249 241 DAVKFLGEVLADDDG--KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI-QTD----IVAYNVLINGFCLNGDIS 313 (572)
Q Consensus 241 ~a~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~ 313 (572)
+|.+.+++.+..... ..+....++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 777777766542100 0012344666677777777777777777766654210 011 225555666666666666
Q ss_pred HHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHHcCCHH
Q 008249 314 SAFAYFCQMLKR----GFLPD-VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA-PD----QISYKTIIQGLCIHGDIV 383 (572)
Q Consensus 314 ~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~ 383 (572)
+|...+++..+. +..+. ..++..+...+...|++++|...++...+.... .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 666666665432 10000 334445555555556666655555554332100 00 233444444444455555
Q ss_pred HHHHHHHHHH
Q 008249 384 KAREFLLSML 393 (572)
Q Consensus 384 ~A~~~~~~~~ 393 (572)
+|.+.+++..
T Consensus 325 ~A~~~~~~al 334 (406)
T 3sf4_A 325 QAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-13 Score=132.54 Aligned_cols=156 Identities=13% Similarity=-0.007 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CH
Q 008249 367 ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV-PE----PHIWNVIIDGYGRCGDLSNAFSIRDLMLSF----GVSS-NV 436 (572)
Q Consensus 367 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~ 436 (572)
.++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +..+ ..
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 34555566666666666666666665532100 11 225566666666777777777666665432 1100 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLD----GIFP-DVFTYNLLIGASCNLGHIHLALQLYDEMLRR----GITP-DI 506 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 506 (572)
.++..+...|...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+. |..+ ..
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 45566666677777777777777666542 1011 1445666666777777777777777766542 1111 12
Q ss_pred HHHHHHHHHHHhcCCH
Q 008249 507 ITYTELIKGHCARGNM 522 (572)
Q Consensus 507 ~~~~~l~~~~~~~g~~ 522 (572)
.++..+...+...|+.
T Consensus 348 ~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHh
Confidence 4455566666655554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-13 Score=132.51 Aligned_cols=239 Identities=17% Similarity=0.116 Sum_probs=111.2
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHhhCC-----CCCCHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV----LTHNYLVNELCKIGDLEKADHVIREMSEMR-----PSPNCA 189 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ 189 (572)
..+..+...+...|++++|+..|+++.+.+ +.+. .++..+...|...|++++|...+++..+.. ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 344445555666666666666666666542 1122 345555555566666666666555554320 011223
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--CCCccHHHHHHH
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG--KATSDVITSTIL 267 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~l 267 (572)
++..+...|...|++++|...+++. +..... ..+....++..+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~a-----------------------------------l~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERH-----------------------------------LTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------------------------------HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-----------------------------------HHHHHHhhchHHHHHHHHHH
Confidence 4444444444455555555544444 332000 000233445555
Q ss_pred HHHHHhcCC-----------------HHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 268 MDSYFKNGD-----------------KFQALALWNDMFQK----N-IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 268 ~~~~~~~g~-----------------~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
...|...|+ +++|++.+++..+. + .+....++..+...|...|++++|...+++..+.
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555555 55555555444321 0 0112234555555566666666666666555432
Q ss_pred CCC-CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 326 GFL-PD----VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA-----PDQISYKTIIQGLCIHGDIVKAREFLLSML 393 (572)
Q Consensus 326 g~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (572)
... ++ ...+..+...+...|++++|...++........ ....++..+...+...|++++|.+.+++..
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 100 01 124445555555566666665555554432100 012334444445555555555555555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-13 Score=128.40 Aligned_cols=282 Identities=19% Similarity=0.134 Sum_probs=167.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-C
Q 008249 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD----IVAYNVLINGFCLNGDISSAFAYFCQMLKR----GFLP-D 330 (572)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~ 330 (572)
+...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +..| .
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 34455556667777777777777777777653 222 345666677777777777777777765432 1111 1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHHcCC-------------HHHHHHHHHHH
Q 008249 331 VITYNTLLNCLCKQGKLDEASHFYGVLSKTGV-APD----QISYKTIIQGLCIHGD-------------IVKAREFLLSM 392 (572)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~-------------~~~A~~~~~~~ 392 (572)
...+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ .+++.+.
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 158 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA---- 158 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH----
Confidence 33455555566666666666666655443210 011 1233444444444444 0000000
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 008249 393 LEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF----GV-SSNVFTFNALILAETRGGSIFDAFSLKKEMLLD-- 465 (572)
Q Consensus 393 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-- 465 (572)
+++|...+++.... +. ......+..+...+...|++++|...+++..+.
T Consensus 159 ------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 159 ------------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44444444443221 11 111335666667777777777777777776542
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 008249 466 --GIF-PDVFTYNLLIGASCNLGHIHLALQLYDEMLRR----GITP-DIITYTELIKGHCARGNMKEAEEVFAKIQTL-- 535 (572)
Q Consensus 466 --~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-- 535 (572)
+.. .....+..+...+...|++++|...+++..+. +.++ ...++..+...|...|++++|.+.++++.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 100 11336777788888888888888888887642 1111 1456778888888999999999998888654
Q ss_pred --CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 536 --GLAI-DHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 536 --g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
+..+ ...++..+...|.+.|++++|.+.++++++.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 1336778888899999999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-12 Score=110.49 Aligned_cols=167 Identities=14% Similarity=0.035 Sum_probs=89.7
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL 444 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 444 (572)
+..+|..+...|...|++++|++.|++..+..+. ++..+..+..+|.+.|++++|...++........ +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 3445555566666666666666666665555433 4555555555555666666666555555543322 3444455555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 445 AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
.+...++++.|...+.+....... +...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 555555555555555555543211 34455555555555555555555555555432 3344555555555555555555
Q ss_pred HHHHHHHHHHc
Q 008249 525 AEEVFAKIQTL 535 (572)
Q Consensus 525 A~~~~~~m~~~ 535 (572)
|.+.|+++.+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 55555555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-12 Score=125.52 Aligned_cols=231 Identities=13% Similarity=-0.017 Sum_probs=154.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------CCHHHHH
Q 008249 337 LLNCLCKQGKLDEASHFYGVLSKT----GVAP-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV------PEPHIWN 405 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~ 405 (572)
....+...|++++|...++...+. +-.+ ...++..+...|...|++++|...+.+..+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556677777777777776553 1111 2356666777777777777777777776642111 1134567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 008249 406 VIIDGYGRCGDLSNAFSIRDLMLSFGVS-SN----VFTFNALILAETRGGSIFDAFSLKKEMLLD----GI-FPDVFTYN 475 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~ 475 (572)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888776542110 11 246777888888888888888888887762 22 22366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-hHHHHHH
Q 008249 476 LLIGASCNLGHIHLALQLYDEMLRR----GITPDIITYTELIKGHCARGN---MKEAEEVFAKIQTLGLAID-HIPFRIL 547 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 547 (572)
.+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ .++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888899999999888887753 111122335667778888888 66666666655 33333 3356778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 008249 548 KKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
...|...|++++|.+.|++.++.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88899999999999999988754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.6e-12 Score=109.49 Aligned_cols=165 Identities=16% Similarity=0.085 Sum_probs=78.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008249 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA 232 (572)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 232 (572)
+.+|..+...|.+.|++++|++.|++..+..| -+..+|..+..++.+.|++++|...++...... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 34444444445555555555555555444443 244444444455555555555555554444432 1133344444444
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 008249 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312 (572)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 312 (572)
+...++++.|...+.++....+ .+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+...|.+.|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT----VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 4455555555555555544333 444445555555555555555555555544443 33444445555555555555
Q ss_pred HHHHHHHHHHHH
Q 008249 313 SSAFAYFCQMLK 324 (572)
Q Consensus 313 ~~a~~~~~~m~~ 324 (572)
++|++.|++..+
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555554444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-13 Score=127.10 Aligned_cols=204 Identities=16% Similarity=0.096 Sum_probs=118.1
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHHhhCC-----CCCCHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD----VLTHNYLVNELCKIGDLEKADHVIREMSEMR-----PSPNCA 189 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ 189 (572)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+.. ......
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556677788888888888888887763 222 3566777788888888888888877765421 112245
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhCCC--------------------hhHHHH
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNGI-RPN----RVTHNILVHALCKKGL--------------------LGDAVK 244 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~a~~ 244 (572)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 666777777777888888877777654210 011 2356666666667777 666666
Q ss_pred HHHHHHhCCCC--CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCCHHHHHH
Q 008249 245 FLGEVLADDDG--KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN-----IQTDIVAYNVLINGFCLNGDISSAFA 317 (572)
Q Consensus 245 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~ 317 (572)
.+++.+..... ..+....++..+...+...|++++|.+.+++..+.. ......++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66655432100 000223455556666666666666666666554321 00011244445555555555555555
Q ss_pred HHHHHH
Q 008249 318 YFCQML 323 (572)
Q Consensus 318 ~~~~m~ 323 (572)
.+++..
T Consensus 245 ~~~~al 250 (338)
T 3ro2_A 245 YYKKTL 250 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.8e-11 Score=112.92 Aligned_cols=236 Identities=14% Similarity=0.038 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHhC----CCH----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-------HcCCH-------HHHHHH
Q 008249 296 IVAYNVLINGFCLN----GDI----SSAFAYFCQMLKRGFLPDVITYNTLLNCLC-------KQGKL-------DEASHF 353 (572)
Q Consensus 296 ~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~A~~~ 353 (572)
...|...+..-.+. ++. ++|..+|++.... .+.+...|..++..+. +.|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44566666654443 233 5777888887765 2335666766666654 34765 788888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008249 354 YGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH-IWNVIIDGYGRCGDLSNAFSIRDLMLSFGV 432 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 432 (572)
|++..+.-.+.+...|..++..+.+.|++++|.++|+++.+..+. +.. .|..++..+.+.|++++|..+|++..+..+
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 888877312334567778888888888888888888888875432 233 677777778888888888888888877543
Q ss_pred CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHH
Q 008249 433 SSNVFTFNALILAET-RGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG-ITP--DIIT 508 (572)
Q Consensus 433 ~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~ 508 (572)
++...|........ ..|++++|..+|++..+.... +...|..++..+.+.|++++|..+|++..+.. ++| ....
T Consensus 166 -~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 166 -TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp -CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred -CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 23444443333322 357888888888877764322 56777777777788888888888888887752 344 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 509 YTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 509 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
|..++..+...|+.++|..+++++.+.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777888888888888887775
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.5e-11 Score=113.70 Aligned_cols=217 Identities=10% Similarity=0.007 Sum_probs=130.2
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHH-------cCCh-------hHHHHHHHHHhh-CCCCCCHHHHHHHHHHHH
Q 008249 135 GTALWLRRKMIQKGTVPDVLTHNYLVNELCK-------IGDL-------EKADHVIREMSE-MRPSPNCATYNAFITGYC 199 (572)
Q Consensus 135 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~ 199 (572)
++|..+|++.+... +.++..|..++..+.. .|++ ++|..+|++..+ ..| .+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 56777777777652 4466677777766653 4665 677777777776 343 35566777777777
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCC-Hh-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH-hcCC
Q 008249 200 RVNELDKALHLFSTMANNGIRPN-RV-THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF-KNGD 276 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~ 276 (572)
+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|+++++..+ .+...|...+.... ..|+
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR----TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT----CCTHHHHHHHHHHHHTSCC
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHcCC
Confidence 777777777777777663 343 22 566666666677777777777777776554 33344433333222 2466
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC--CHhHHHHHHHHHHHcCCHHHHHHH
Q 008249 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG-FLP--DVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
.++|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666665542 3345556666666666666666666666666542 233 234455555555556666666666
Q ss_pred HHHHHhC
Q 008249 354 YGVLSKT 360 (572)
Q Consensus 354 ~~~~~~~ 360 (572)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-12 Score=122.83 Aligned_cols=231 Identities=11% Similarity=0.002 Sum_probs=119.4
Q ss_pred HHhCCChhhHHHHHHHHHhC--CCCCC--hhhHHHHHHH--HHHcCChhHHH-----------HHHHHHhhCCCCCCH--
Q 008249 128 LCLGGKIGTALWLRRKMIQK--GTVPD--VLTHNYLVNE--LCKIGDLEKAD-----------HVIREMSEMRPSPNC-- 188 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~--g~~~~--~~~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~-- 188 (572)
+.+.+++++|..+.+++.+. ....+ ...|..++.. ..-.+.++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45678999999998887664 22123 2333333322 11223333333 555554331110010
Q ss_pred --HHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC---CC
Q 008249 189 --ATYNAFITGYCRVNELDKALHLFSTMANN----GIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK---AT 258 (572)
Q Consensus 189 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~ 258 (572)
..+......+...|++++|...|++..+. +-.+ ...++..+...+...|++++|...+.+.++..... .+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 01112445566677777777777777653 1111 23456667777777777777777777766532101 01
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-C
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNI-----QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR----GF-L 328 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~ 328 (572)
....+++.+...|...|++++|++.|++..+... .....++..+...|...|++++|.+.+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 2244566666666777777777766666554210 001124555555666666666666666555441 11 1
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 329 PDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 329 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 358 (572)
....++..+...+.+.|++++|...+++..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 223344555555555555555555555443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-12 Score=127.71 Aligned_cols=212 Identities=14% Similarity=0.038 Sum_probs=172.3
Q ss_pred ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh-hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 008249 133 KIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDL-EKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLF 211 (572)
Q Consensus 133 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 211 (572)
.++++++.++...... +.+...+..+...+...|++ ++|++.|++..+..| .+...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3667777787766542 34677888888999999999 999999999988776 46788999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhC---------CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc--------
Q 008249 212 STMANNGIRPNRVTHNILVHALCKK---------GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN-------- 274 (572)
Q Consensus 212 ~~m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 274 (572)
++..+. .|+...+..+...+... |++++|.+.++++++..+ .+...|..+..+|...
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV----LDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHhhcccc
Confidence 999875 56778888888888888 999999999999998775 7788888999998888
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQ---TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS 351 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 351 (572)
|++++|++.|++..+.. + .+...|..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.
T Consensus 235 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998888764 3 477888888888888888888888888887753 234556777777777778777777
Q ss_pred HHH
Q 008249 352 HFY 354 (572)
Q Consensus 352 ~~~ 354 (572)
+.+
T Consensus 313 ~~~ 315 (474)
T 4abn_A 313 ESK 315 (474)
T ss_dssp HHT
T ss_pred HHh
Confidence 654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-12 Score=126.76 Aligned_cols=211 Identities=9% Similarity=-0.109 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 008249 312 ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL-DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLL 390 (572)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 390 (572)
+++++..++..... .+.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444443332 122444555555555555555 55555555555432 2234455555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 008249 391 SMLEKSVVPEPHIWNVIIDGYGRC---------GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG--------GSIF 453 (572)
Q Consensus 391 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--------g~~~ 453 (572)
+..+.. |+...+..+...+... |++++|...+++..+..+. +...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 555543 3344455555555555 5555555555555443221 344444455554444 4455
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 454 DAFSLKKEMLLDGIF--PDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEV 528 (572)
Q Consensus 454 ~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 528 (572)
+|...|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554442110 134444444555555555555555555544431 22333444444444444444444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.1e-12 Score=118.84 Aligned_cols=241 Identities=15% Similarity=0.080 Sum_probs=172.1
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------C
Q 008249 330 DVITYNTLLNCLCKQGKLDEASHFYGVLSKT-------GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK------S 396 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 396 (572)
+..++..+...+...|++++|..+++.+.+. ..+.....+..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888889999999999999999998773 22334577888999999999999999999998764 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 008249 397 -VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF------GVSS-NVFTFNALILAETRGGSIFDAFSLKKEMLLD--- 465 (572)
Q Consensus 397 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--- 465 (572)
.......+..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2224567888899999999999999999988764 2222 3456788889999999999999999998764
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 008249 466 ---GIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRR-------GITPDI-------ITYTELIKGHCARGNMKEAEE 527 (572)
Q Consensus 466 ---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-------~~~~~l~~~~~~~g~~~~A~~ 527 (572)
+..|+ ..++..+...+...|++++|...++++.+. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 22333 557888899999999999999999998863 112222 122223333444556666666
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 528 VFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 528 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
.++...... +.+..++..++..|.+.|++++|.++|++.++..
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 777766541 2345678899999999999999999999998754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.9e-12 Score=118.54 Aligned_cols=245 Identities=13% Similarity=0.092 Sum_probs=175.7
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhC-------CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhC-----
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQK-------GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM----- 182 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 182 (572)
+.+..+|..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999998873 22345677888999999999999999999988764
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC------CCCC-CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 008249 183 -R-PSPNCATYNAFITGYCRVNELDKALHLFSTMANN------GIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 183 -~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 253 (572)
+ ......++..+...+...|++++|.+.+++..+. +-.| ....+..+...+...|++++|.+.+++++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2234668889999999999999999999998764 2222 34567888899999999999999999988751
Q ss_pred ----CCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCH-------HHHHHHHHHHHhCCCHHHH
Q 008249 254 ----DGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK-------NIQTDI-------VAYNVLINGFCLNGDISSA 315 (572)
Q Consensus 254 ----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-------~~~~~li~~~~~~g~~~~a 315 (572)
....+....++..+...|...|++++|.+.++++.+. ...+.. ..+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 0011256678999999999999999999999998863 111111 1122223333444555566
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
...+...... .+.+..++..+...|.+.|++++|.+.+++..+.
T Consensus 264 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 264 GGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666665543 1334667888999999999999999999988763
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-10 Score=114.56 Aligned_cols=230 Identities=13% Similarity=-0.024 Sum_probs=158.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----C-CCHHHHH
Q 008249 337 LLNCLCKQGKLDEASHFYGVLSKTGV-AP----DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV-----V-PEPHIWN 405 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~-~~~~~~~ 405 (572)
....+...|++++|...+++..+... .+ ...++..+...|...|+++.|...+.+..+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677888888888877765311 11 234667777778888888888888877664211 1 1234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 008249 406 VIIDGYGRCGDLSNAFSIRDLMLSF----GVS-SNVFTFNALILAETRGGSIFDAFSLKKEMLL-----DGIFPDVFTYN 475 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 475 (572)
.+...|...|++++|...+++..+. +.. ....++..+...|...|++++|...+++..+ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7888888888888888888776542 111 1234677788888889999999999888876 4322 367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-hHHHHHH
Q 008249 476 LLIGASCNLGHIHLALQLYDEMLRR----GITPDIITYTELIKGHCARGN---MKEAEEVFAKIQTLGLAID-HIPFRIL 547 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 547 (572)
.+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|...+++ .+..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 8888999999999999999988863 111123445666666777787 6666666665 322333 3356678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 008249 548 KKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
...|...|++++|...|+++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999999999988753
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.6e-10 Score=110.88 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=90.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CCHHHHH
Q 008249 229 LVHALCKKGLLGDAVKFLGEVLADDDGK--ATSDVITSTILMDSYFKNGDKFQALALWNDMFQK----NI-Q-TDIVAYN 300 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~-~~~~~~~ 300 (572)
....+...|++++|...|++++...... .+....++..+...|...|+++.|+..+++..+. +. . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3444566777777777777776542211 0123456677777777777777777777766542 10 0 1234556
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 008249 301 VLINGFCLNGDISSAFAYFCQMLKR----GFLP-DVITYNTLLNCLCKQGKLDEASHFYGVLSK-----TGVAPDQISYK 370 (572)
Q Consensus 301 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 370 (572)
.+...|...|++++|.+.|.+..+. +..+ ...++..+...|...|++++|...+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6666677777777777776665542 1111 123445555556666666666666555544 21 11234444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 008249 371 TIIQGLCIHGDIVKAREFLLSMLE 394 (572)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~ 394 (572)
.+...+.+.|++++|...+++..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-10 Score=110.15 Aligned_cols=301 Identities=13% Similarity=0.010 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----Hh
Q 008249 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV----AYNVLINGFCLNGDISSAFAYFCQMLKRGF-LPD----VI 332 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~ 332 (572)
.........+...|++++|...+++........+.. +++.+...+...|++++|...+.+..+... .++ ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344556667788999999999999988764222222 456677788889999999999988775311 112 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CH
Q 008249 333 TYNTLLNCLCKQGKLDEASHFYGVLSKT----GVA--P-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP----EP 401 (572)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~ 401 (572)
++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566777888999999999998887653 221 2 23456667788889999999999999887643221 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHH
Q 008249 402 HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS-N-VFTFN----ALILAETRGGSIFDAFSLKKEMLLDGIFP---DVF 472 (572)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~ 472 (572)
.++..+...+...|++++|...+++.......+ + ..... ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 457778888889999999999998876531111 1 11111 23344778899999999988877543221 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRR----GITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 547 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 547 (572)
.+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..... +. ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccH
Confidence 4667778888899999999998887642 222233 366677788888999999999999988762 11 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 008249 548 KKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 548 ~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
...+...| +....++++++..
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHHHcc--HHHHHHHHHHHhC
Confidence 23344555 5666777776554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-09 Score=107.46 Aligned_cols=96 Identities=13% Similarity=0.003 Sum_probs=40.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCC----CCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHH
Q 008249 228 ILVHALCKKGLLGDAVKFLGEVLADD----DGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQ----TDIVAY 299 (572)
Q Consensus 228 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~ 299 (572)
.+...+...|++++|...+++.+... ....+.....+..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 34444444555555555554443311 0000012333444444555555555555555544432100 012234
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 300 NVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
..+...+...|++++|...+++..
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444555555555555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9.8e-11 Score=101.73 Aligned_cols=161 Identities=16% Similarity=0.054 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 405 NVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNL 484 (572)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 484 (572)
..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. ..+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 3334444444444444444444433221 133444444444444455555555444444331 11344444445555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 485 GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIH 564 (572)
Q Consensus 485 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (572)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554431 3344445555555555555555555555555442 223344455555555555555555555
Q ss_pred HHHHh
Q 008249 565 QKWLL 569 (572)
Q Consensus 565 ~~~l~ 569 (572)
+++++
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-10 Score=100.27 Aligned_cols=158 Identities=11% Similarity=0.036 Sum_probs=63.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC
Q 008249 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 238 (572)
+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Confidence 33333444444444444444333322 233334444444444444444444444443321 1123333344444444444
Q ss_pred hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 008249 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAY 318 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 318 (572)
+++|.+.++++....+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...
T Consensus 92 ~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 92 YDLAVPLLIKVAEANP----INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc----HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444332 333344444444444444444444444444332 22333444444444444444444444
Q ss_pred HHHHH
Q 008249 319 FCQML 323 (572)
Q Consensus 319 ~~~m~ 323 (572)
+++..
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-11 Score=123.92 Aligned_cols=166 Identities=14% Similarity=0.051 Sum_probs=111.6
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
++.+|+.|...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|+..|++..+..| .+..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45567777777777777777777777776652 33456677777777777777777777777766655 35666777777
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
++...|++++|++.|++..+.. +-+...|..+..++.+.|++++|++.|+++++..+ .+...+..+...+...|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P----~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP----DFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHhhhhhHHHhccc
Confidence 7777777777777777766643 12455666677777777777777777777766554 556666667777777777
Q ss_pred HHHHHHHHHHHHh
Q 008249 277 KFQALALWNDMFQ 289 (572)
Q Consensus 277 ~~~A~~~~~~~~~ 289 (572)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-10 Score=102.01 Aligned_cols=196 Identities=10% Similarity=-0.018 Sum_probs=158.3
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
.|+..|......+...|++++|+..|+..++..-+++...+..+..++...|++++|+..+++..+..|. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888999999999999999999999998753367788888999999999999999999999998763 778899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCH-------hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCc--cHHHHHH
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNR-------VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATS--DVITSTI 266 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~ 266 (572)
..+...|++++|.+.|++..+.. +.+. ..|..+...+...|++++|.+.|+++++..+ . +...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS----KKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC----HHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC----CcccHHHHHH
Confidence 99999999999999999998753 2244 4577888889999999999999999999765 6 6788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 267 LMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 267 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+...|...|+ ..++++...+ ..+...|.... ....+.+++|+..|++..+.
T Consensus 159 l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 9988876553 3445555443 33444454443 23456789999999999886
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.5e-11 Score=123.72 Aligned_cols=168 Identities=14% Similarity=0.063 Sum_probs=152.0
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH
Q 008249 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNIL 229 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 229 (572)
+.+..+++.|...|.+.|++++|++.|++..+..| -+..+|+.+..+|.+.|++++|++.|++..+.. +-+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34568899999999999999999999999999876 478899999999999999999999999998864 2257889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 008249 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (572)
Q Consensus 230 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (572)
..++...|++++|++.|+++++..+ .+..+|+.+...|.+.|++++|++.|++..+.. +-+...|..+...+...
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINP----AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhc
Confidence 9999999999999999999999776 789999999999999999999999999999876 56788999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 008249 310 GDISSAFAYFCQMLK 324 (572)
Q Consensus 310 g~~~~a~~~~~~m~~ 324 (572)
|++++|.+.+++..+
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999998888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-10 Score=101.68 Aligned_cols=197 Identities=11% Similarity=-0.032 Sum_probs=156.9
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008249 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILV 230 (572)
Q Consensus 151 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 230 (572)
.++..+......+.+.|++++|...|++..+..+.++...+..+..++...|++++|++.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888999999999999999999999998775677888889999999999999999999999864 22567888999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHH
Q 008249 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDV-------ITSTILMDSYFKNGDKFQALALWNDMFQKNIQT--DIVAYNV 301 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 301 (572)
..+...|++++|.+.++++++..+ .+. ..|..+...+...|++++|++.|++..+.. +. +...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP----GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHH
Confidence 999999999999999999999776 455 668889999999999999999999999874 33 4567777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008249 302 LINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (572)
Q Consensus 302 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 361 (572)
+...|...| ...++++...+ ..+...|.... ....+.+++|...+++..+..
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 777776544 34455555543 22344444433 334566899999999998863
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-10 Score=109.16 Aligned_cols=229 Identities=14% Similarity=0.059 Sum_probs=159.3
Q ss_pred HHcCCHHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 008249 342 CKQGKLDEASHFYGVLSKT-------GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK------SV-VPEPHIWNVI 407 (572)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 407 (572)
...|++++|..++++..+. ..+....++..+...+...|++++|...++++.+. +. .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777665542 22234677888999999999999999999998864 21 2245678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHH
Q 008249 408 IDGYGRCGDLSNAFSIRDLMLSF------GV-SSNVFTFNALILAETRGGSIFDAFSLKKEMLLD------GIFP-DVFT 473 (572)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~ 473 (572)
...|...|++++|...+++..+. .. +....++..+...|...|++++|..+++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 224567888889999999999999999998864 1133 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCC-
Q 008249 474 YNLLIGASCNLGHIHLALQLYDEMLRR-------GITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQT----LG-LAI- 539 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g-~~p- 539 (572)
+..+...+...|++++|...++++.+. ...+.. ..|..+...+...+....+.. +..+.. .+ ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 888999999999999999999998863 122222 344444444444333332222 222211 11 112
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 540 DHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 540 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
...++..+...|...|++++|.++|++.++..
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34468889999999999999999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=109.06 Aligned_cols=230 Identities=14% Similarity=0.086 Sum_probs=150.9
Q ss_pred HhCCChhhHHHHHHHHHhC-------CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhC------CC-CCCHHHHHHH
Q 008249 129 CLGGKIGTALWLRRKMIQK-------GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEM------RP-SPNCATYNAF 194 (572)
Q Consensus 129 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 194 (572)
...|++++|+..|++.++. ..+....++..+...|...|++++|...+++..+. +. .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665542 22234567778888888888888888888887654 11 2345678888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC------CC-CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CCCCCCccHH
Q 008249 195 ITGYCRVNELDKALHLFSTMANN------GI-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLAD-----DDGKATSDVI 262 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 262 (572)
...+...|++++|.+.|++.... .- +....++..+...+...|++++|...+++++.. +. ..+....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP-DDPNVAK 170 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 88888899999999888888654 11 223566778888889999999999999888775 11 1124577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhCCCHH------HHHHHHHHHHHCCCC
Q 008249 263 TSTILMDSYFKNGDKFQALALWNDMFQK-------NIQT-DIVAYNVLINGFCLNGDIS------SAFAYFCQMLKRGFL 328 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~ 328 (572)
++..+...|...|++++|.+.+++..+. ...+ ....|..+...+...+... .+...+..... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 8888999999999999999999888753 1122 2233333333333333222 22222221111 112
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 329 PDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 329 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
....++..+...|...|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23456788889999999999999999987753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-08 Score=99.02 Aligned_cols=124 Identities=7% Similarity=-0.043 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN-LGHIHLALQLYDEMLRRGITPDIITYTELIKG 515 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 515 (572)
..|...+....+.++.+.|..+|+.. .. ...+...|......-.. .++++.|..+|+...+. .+-+...|...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 34555555555666777788888777 32 11233333322222222 23577788888877764 23334455666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 516 HCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 516 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
....|+.+.|..+|+++. .....|...+..-...|+.+.+..++++++
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677778888888877762 134556666666666788777777777765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=9.5e-10 Score=103.55 Aligned_cols=174 Identities=10% Similarity=-0.014 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHHcCCHHHH
Q 008249 311 DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT----GVAPD-QISYKTIIQGLCIHGDIVKA 385 (572)
Q Consensus 311 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A 385 (572)
++++|...|.+. ...|...|++++|...|.+.... |-+++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 23456667777777776665442 21111 34566666666666666666
Q ss_pred HHHHHHHHhCCCCC-C----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 008249 386 REFLLSMLEKSVVP-E----PHIWNVIIDGYGRC-GDLSNAFSIRDLMLSFGVSS-N----VFTFNALILAETRGGSIFD 454 (572)
Q Consensus 386 ~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~ll~~~~~~g~~~~ 454 (572)
+..+++..+..... + ..++..+...|... |++++|...|++..+..... + ..+++.+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 66666655421100 0 12344444455443 55555555555443321000 0 1234444444445555555
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 455 AFSLKKEMLLDGIFPDV------FTYNLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 455 a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
|...|++..+....... ..|..+..++...|++++|...|++..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555544443211111 1233344444444555555555444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-08 Score=92.60 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=85.5
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 207 ALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWND 286 (572)
Q Consensus 207 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 286 (572)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..++.. .+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE--GTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST--THHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555544433 3334444455555555566666666655555443211 3455555555566666666666666655
Q ss_pred HHhCCCCC-----CHHHHHHHHHHH--HhCC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008249 287 MFQKNIQT-----DIVAYNVLINGF--CLNG--DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (572)
Q Consensus 287 ~~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 357 (572)
|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5543 23 133333333332 1122 556666666665443 233222233333555566666666665544
Q ss_pred HhCC---------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 358 SKTG---------VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (572)
Q Consensus 358 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (572)
.+.- -+.+..+...+|......|+ +|.++++++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3310 02233444344333334444 555555555554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-09 Score=85.91 Aligned_cols=131 Identities=19% Similarity=0.146 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008249 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 517 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 517 (572)
.|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 345555666666677777777766665432 245566666666777777777777777766643 445566667777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 518 ARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 518 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
..|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777776652 2345566667777777777777777777776544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-08 Score=93.44 Aligned_cols=249 Identities=14% Similarity=0.042 Sum_probs=170.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 008249 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL 347 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 347 (572)
++-..-.|.+..++.-...+.. ......-.-+.++|...|++... ..-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence 4555678999988874333221 12223334456888888877642 1223444344444433 3322
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 348 DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV-VPEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 348 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
|...+++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677788777654 45666667888889999999999999999877664 23667788889999999999999999999
Q ss_pred HHhCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 427 MLSFGVSS-----NVFTFNALILAE--TRGG--SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 427 ~~~~~~~p-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
|.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9874 35 355666666553 3334 899999999998765 355444445555888999999999999976
Q ss_pred HHC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008249 498 LRR-----G----ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 498 ~~~-----g----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
.+. . -+.|..++..+|......|+ +|.++++++.+. .|+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 642 0 13456677566666666786 889999999986 56654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.2e-09 Score=96.73 Aligned_cols=102 Identities=12% Similarity=0.115 Sum_probs=80.7
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-CC-HH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD---VLTHNYLVNELCKIGDLEKADHVIREMSEMRPS-PN-CA 189 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~ 189 (572)
+.+...+..+...+.+.|++++|+..|+.+++.. +.+ ..++..+..+|.+.|++++|...|++..+..|. |. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677788888899999999999999988863 223 567888888999999999999999998886552 22 45
Q ss_pred HHHHHHHHHHh--------cCCHhHHHHHHHHHHHC
Q 008249 190 TYNAFITGYCR--------VNELDKALHLFSTMANN 217 (572)
Q Consensus 190 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~ 217 (572)
++..+..++.. .|++++|...|++..+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 67777778888 88999999999988875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-08 Score=83.01 Aligned_cols=127 Identities=19% Similarity=0.279 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008249 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
+..+...+...|++++|..+++++.+..+ .+...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 33444444444555555555544444332 233444444444444444444444444444332 1233334444444444
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
.|++++|.+.++++....+ .+...+..++..+...|++++|.+.++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444444332 333344444444444444444444444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-08 Score=93.01 Aligned_cols=103 Identities=9% Similarity=-0.017 Sum_probs=55.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC-CHhHHH
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN--CATYNAFITGYCRVNELDKALHLFSTMANNGI-RP-NRVTHN 227 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~ 227 (572)
+...+..+...+.+.|++++|...|+++.+..|... ...+..+..++.+.|++++|+..|++..+... .| ....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 444555555566666666666666666665443211 44555555666666666666666666655321 11 123344
Q ss_pred HHHHHHHh--------CCChhHHHHHHHHHHhCCC
Q 008249 228 ILVHALCK--------KGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 228 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~ 254 (572)
.+..++.. .|++++|...|+++++..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 45555555 5666666666666655444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.1e-09 Score=97.54 Aligned_cols=135 Identities=8% Similarity=-0.100 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC---CC--CHhHHHHHHHHHHhC-CChhHHHHHHHHHHhCCCCCCCc--cH
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNGI---RP--NRVTHNILVHALCKK-GLLGDAVKFLGEVLADDDGKATS--DV 261 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~--~~ 261 (572)
+|+.+..+|...|++++|+..|++...... .+ -..++..+...|... |++++|...|++.+...+....+ ..
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 444444444444444444444444432100 00 022444455555553 55555555555554432100000 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI------VAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
.++..+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|...|++..+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555555555555555555555554211111 1344445555555555555555555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=3e-09 Score=112.53 Aligned_cols=130 Identities=15% Similarity=0.040 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 008249 188 CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267 (572)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (572)
...+..+...+...|++++|++.|++..+.. +.+...|..+..++...|++++|.+.|+++++..+ .+...+..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP----GELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----TCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHH
Confidence 3444444444444555555555554444432 11334444444444455555555555555544433 334444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
..+|.+.|++++ ++.|++..+.+ +.+...|..+...+.+.|++++|++.|++..+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 455555555554 44554444433 23344444444555555555555555544443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=90.52 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=38.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
+..++.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++++..+ .+..++..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA----DNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHH
Confidence 4455555555555555555555432 11344455555555555555555555555555443 444555555555443
Q ss_pred c
Q 008249 274 N 274 (572)
Q Consensus 274 ~ 274 (572)
.
T Consensus 135 ~ 135 (208)
T 3urz_A 135 T 135 (208)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-08 Score=89.64 Aligned_cols=132 Identities=14% Similarity=0.047 Sum_probs=85.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 228 ILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307 (572)
Q Consensus 228 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (572)
.+..++.+.|++++|...|+++++..+ .+...+..+...+...|++++|+..|++..+.. +.+..+|..+...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAP----NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 367777888888888888888888665 677788888888888888888888888887765 456677777777765
Q ss_pred hCCC--HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhh
Q 008249 308 LNGD--ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQIS 368 (572)
Q Consensus 308 ~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 368 (572)
..|. ...+...+..... ..|....+.....++...|++++|...|++..+. .|+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 5543 3334444444321 1222223333444555667777777777777663 455433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-06 Score=87.46 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008249 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR-GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGAS 481 (572)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 481 (572)
.|...+....+.++.+.|..+|+.. +. ...+...|......-.. .++.+.|..+|+...+.-. -+...+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 3444444444555566666666665 21 11223333222211111 2246666666666555321 1233344455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 482 CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
...|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55666666666666652 234556666655555666666666666555
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.5e-08 Score=85.66 Aligned_cols=179 Identities=16% Similarity=0.141 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHhHHHHH
Q 008249 135 GTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN----ELDKALHL 210 (572)
Q Consensus 135 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 210 (572)
.+|.+.|++..+.| ++.++..+...|...+++++|...|++..+.+ +...+..+...|.. + ++++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677777777764 67778888888888888888888888887754 45667777777766 5 78888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh----cCCHHHHHH
Q 008249 211 FSTMANNGIRPNRVTHNILVHALCK----KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK----NGDKFQALA 282 (572)
Q Consensus 211 ~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 282 (572)
|++..+.| +...+..|...|.. .+++++|.+.|++..+.++.. ..+..+..|...|.. .++.++|+.
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD--AAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH--HHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc--chHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88887754 56677777777766 778888888888887765300 126777888888877 778888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHHCCC
Q 008249 283 LWNDMFQKNIQTDIVAYNVLINGFCLN-G-----DISSAFAYFCQMLKRGF 327 (572)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~ 327 (572)
.|++..+. ..+...+..|...|... | ++++|..+|++..+.|.
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888776 23455666666666543 2 77888888887777653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=95.17 Aligned_cols=167 Identities=11% Similarity=0.067 Sum_probs=121.5
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHH-
Q 008249 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNI- 228 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~- 228 (572)
+.+...+..+...+...|++++|...|++..+..| .+...+..+...+.+.|++++|...+++.... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 44556677777788888888888888888887766 36777888888888888888888888887654 344433222
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 008249 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQ-TDIVAYNVLINGFC 307 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~ 307 (572)
....+...++.++|.+.+++.+...+ .+...+..+...+...|++++|++.|.++.+.... .+...+..++..+.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P----~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP----EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 22335566777778888888888665 77778888888888888888888888888776411 12567777888888
Q ss_pred hCCCHHHHHHHHHHHH
Q 008249 308 LNGDISSAFAYFCQML 323 (572)
Q Consensus 308 ~~g~~~~a~~~~~~m~ 323 (572)
..|+.++|...|++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 8888888877776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.7e-09 Score=88.48 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHh
Q 008249 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA-LCK 235 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 235 (572)
..+...+.+.|++++|...|++..+..| .+...+..+...+...|++++|+..|++..... |+...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 3344445555555555555555544433 244455555555555555555555555544321 222222111111 111
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHH
Q 008249 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT-DIVAYNVLINGFCLNGDISS 314 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 314 (572)
.+...+|...+++.++..+ .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 87 ~~~~~~a~~~~~~al~~~P----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANP----DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHTSCHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hcccchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1222335566666665544 556666666666666666666666666666553211 23455666666666666666
Q ss_pred HHHHHHHHH
Q 008249 315 AFAYFCQML 323 (572)
Q Consensus 315 a~~~~~~m~ 323 (572)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.96 E-value=8.1e-08 Score=86.35 Aligned_cols=204 Identities=10% Similarity=-0.013 Sum_probs=116.3
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCC-CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH--HHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGT-VP-DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC--ATYN 192 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 192 (572)
+...+..+...+.+.|++++|+..|+++++..- .| ....+..+..+|.+.|++++|+..|+++.+..|.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677778888888888888888887521 11 1356777788888888888888888888876654221 2344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
.+..++...|.. .+ ..|..+...+...|+.++|...|+++++..+ .+..++.......
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P----~~~~a~~a~~~l~- 140 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYP----NSQYTTDATKRLV- 140 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCT----TCTTHHHHHHHHH-
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCc----CChhHHHHHHHHH-
Confidence 444444433210 11 1122233344456788888888888888765 2222222111100
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHHcCCHH
Q 008249 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD----VITYNTLLNCLCKQGKLD 348 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~ 348 (572)
.+...+. .....+...|.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|+.+
T Consensus 141 ---------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 141 ---------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp ---------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcH
Confidence 0000000 111234556677777777777777777652 22 235666777777777777
Q ss_pred HHHHHHHHHHhCC
Q 008249 349 EASHFYGVLSKTG 361 (572)
Q Consensus 349 ~A~~~~~~~~~~~ 361 (572)
+|.+.++.+...+
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 7777777776653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-08 Score=93.85 Aligned_cols=166 Identities=12% Similarity=-0.039 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 008249 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYN-LLI 478 (572)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li 478 (572)
+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++++... .|+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 4556667777888888888888888888775443 6677888888888888888888888887764 34543332 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCH
Q 008249 479 GASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKES 557 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 557 (572)
..+...++.++|...+++..+.. +.+...+..+...|...|++++|.+.++++.+..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33567778888888888888763 5567888889999999999999999999998863221 255788888999999999
Q ss_pred HHHHHHHHHHHh
Q 008249 558 DKARDIHQKWLL 569 (572)
Q Consensus 558 ~~A~~~~~~~l~ 569 (572)
++|...|++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999998888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.2e-09 Score=88.61 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=129.7
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH-H
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG-Y 198 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~ 198 (572)
.+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+..| +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 46677888999999999999999987753 44678899999999999999999999999887665 44433332222 2
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
...+...+|...+++..+.. +-+...+..+...+...|++++|...|+++++..+.. .+...+..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA--QDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT--TTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc--ChHHHHHHHHHHHHHhCCCC
Confidence 23333456788999988753 2257888999999999999999999999999987522 45678999999999999999
Q ss_pred HHHHHHHHHHh
Q 008249 279 QALALWNDMFQ 289 (572)
Q Consensus 279 ~A~~~~~~~~~ 289 (572)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999987653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.95 E-value=5.9e-08 Score=87.26 Aligned_cols=165 Identities=11% Similarity=0.011 Sum_probs=82.3
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV----LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
...+..+...|.+.|++++|+..|+++++.. |+. .++..+..++.+.|.. .+ ..|..
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~~~~~~~-----~~------------~~~~~ 101 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTNMALDDS-----AL------------QGFFG 101 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHHHhhhhh-----hh------------hhhhc
Confidence 4578889999999999999999999999863 332 2455555556543211 00 11222
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
+...+...|++++|...|+++.+. .|+. ..+..... +..+.. ........+...|.
T Consensus 102 ~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~--------------l~~~~~-------~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 102 VDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR--------------LVFLKD-------RLAKYEYSVAEYYT 158 (225)
T ss_dssp ------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH--------------HHHHHH-------HHHHHHHHHHHHHH
T ss_pred cchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH--------------HHHHHH-------HHHHHHHHHHHHHH
Confidence 223334456666666666666654 2222 22211100 000000 00111123445555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 273 KNGDKFQALALWNDMFQKNIQTD---IVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|.+.++.+...
T Consensus 159 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 5666666666666555542 111 134555555666666666666666655554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-09 Score=88.76 Aligned_cols=139 Identities=9% Similarity=0.020 Sum_probs=63.2
Q ss_pred hCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008249 130 LGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH 209 (572)
Q Consensus 130 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (572)
..|++++|+..+....... +.+...+..+...|.+.|++++|++.|++..+..| .+..+|..+..++.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHH
Confidence 3445555555555444321 11233344444555555555555555555554443 244455555555555555555555
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHH-HHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 210 LFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKF-LGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 210 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
.|++..+.. +-+..++..+...+.+.|+.++|.+. ++++++..| .+..+|......+...|
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P----~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP----GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST----TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHhC
Confidence 555554432 11344444455555555554443332 344444333 34444444444443333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4e-09 Score=88.10 Aligned_cols=146 Identities=12% Similarity=-0.003 Sum_probs=111.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC
Q 008249 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 238 (572)
|...+...|++++|+..++......+ .+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 34455667888899888888876543 245566778888999999999999999988764 2367788888899999999
Q ss_pred hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 008249 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALAL-WNDMFQKNIQTDIVAYNVLINGFCLNGD 311 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (572)
+++|...|+++++..+ .+..++..+...|.+.|+.++|.+. +++..+.. |-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP----TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999998776 7788889999999999988776655 47777664 5567778777777776664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-07 Score=83.28 Aligned_cols=176 Identities=13% Similarity=-0.017 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 008249 349 EASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCG----DLSNAFSIR 424 (572)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 424 (572)
+|.+.|+...+.| +...+..+...|...+++++|++.|++..+.+ ++..+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 55556666666666666666666666666654 44555566666655 5 667777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 008249 425 DLMLSFGVSSNVFTFNALILAETR----GGSIFDAFSLKKEMLLDGIF-PDVFTYNLLIGASCN----LGHIHLALQLYD 495 (572)
Q Consensus 425 ~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~ 495 (572)
++..+.| +...+..|...|.. .+++++|..+|++..+.+.. .+...+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7666543 45556666666655 56777777777776665421 015566666666666 667777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 008249 496 EMLRRGITPDIITYTELIKGHCAR-G-----NMKEAEEVFAKIQTLG 536 (572)
Q Consensus 496 ~m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g 536 (572)
+..+. +.+...+..|...|... | +.++|.++|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77664 23444566666666543 2 6777777777777765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=9.6e-09 Score=108.61 Aligned_cols=173 Identities=12% Similarity=-0.088 Sum_probs=101.7
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 342 CKQGKLDEASHFYGVLS--------KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413 (572)
Q Consensus 342 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 413 (572)
...|++++|.+.+++.. +. .+.+...+..+...+...|++++|++.++++.+.+.. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 55666666666666665 32 1234455666666666666666666666666665433 55566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 414 CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQL 493 (572)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 493 (572)
.|++++|...|++..+..+. +...|..+..++.+.|++++ .+.|++..+.+.. +...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666654332 45556666666666666666 6666666654322 455666666666666666666666
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 008249 494 YDEMLRRGITPD-IITYTELIKGHCARGN 521 (572)
Q Consensus 494 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 521 (572)
|+++.+. .|+ ...|..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 6666553 343 3455555555554443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.6e-07 Score=83.09 Aligned_cols=217 Identities=14% Similarity=0.068 Sum_probs=135.6
Q ss_pred hhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC--ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hhc---CCHh
Q 008249 135 GTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG--DLEKADHVIREMSEMRPSPNCATYNAFITGY----CRV---NELD 205 (572)
Q Consensus 135 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 205 (572)
++|+.+++.++... +-+..+|+.-...+...| +++++++.++.+....|+ +..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 57778887777763 334556677667777777 778888888888777663 455666555444 444 6677
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChh--HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC------H
Q 008249 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLG--DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD------K 277 (572)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 277 (572)
+++++++.+.+.. +-+..+|+.-.-++.+.|.++ ++.+.++++++.++ .|..+|+.-...+...+. +
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~----~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL----KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhccccchhhhH
Confidence 7777777777654 236666766666666677766 77777777777665 677777766666666555 6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 008249 278 FQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISS-AFAYFCQMLKRG--FLPDVITYNTLLNCLCKQGKLDEASHFY 354 (572)
Q Consensus 278 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 354 (572)
+++++.++++.... +-|...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..+...+.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66666666666554 4566666666666656555333 333444433321 1224455555556666666666666666
Q ss_pred HHHHh
Q 008249 355 GVLSK 359 (572)
Q Consensus 355 ~~~~~ 359 (572)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.5e-08 Score=102.40 Aligned_cols=154 Identities=11% Similarity=-0.063 Sum_probs=114.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 379 HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSL 458 (572)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 458 (572)
.|++++|.+.+++..+.... +...+..+...+...|++++|...+++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888999999998876544 6778888999999999999999999999886543 678888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 008249 459 KKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR---GNMKEAEEVFAKIQTL 535 (572)
Q Consensus 459 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 535 (572)
+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.++++.+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998876422 57788889999999999999999999988763 45677888899999999 9999999999999887
Q ss_pred C
Q 008249 536 G 536 (572)
Q Consensus 536 g 536 (572)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-06 Score=82.15 Aligned_cols=219 Identities=10% Similarity=-0.016 Sum_probs=149.6
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH----HhC---CC
Q 008249 168 DLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN--ELDKALHLFSTMANNGIRPNRVTHNILVHAL----CKK---GL 238 (572)
Q Consensus 168 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---g~ 238 (572)
..++|+.+++.+....| -+..+|+.--.++...| +++++++.++.+.....+ +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34689999999998877 46778888888888888 999999999999876433 455566544444 444 78
Q ss_pred hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-----
Q 008249 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF--QALALWNDMFQKNIQTDIVAYNVLINGFCLNGD----- 311 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 311 (572)
+++++++++.+++..+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.+ +.|...|+.-...+...+.
T Consensus 126 ~~~EL~~~~~~l~~~p----kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 126 PYREFDILEAMLSSDP----KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp THHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 8899999999988776 78888888888888888877 8888888888776 5677777766666666655
Q ss_pred -HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH-HHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHH
Q 008249 312 -ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDE-ASHFYGVLSKTG--VAPDQISYKTIIQGLCIHGDIVKARE 387 (572)
Q Consensus 312 -~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (572)
++++++.++++.... +-|...|+.+-..+.+.|+... +..+...+...+ -+.+...+..+.+.|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 666777777666653 3355666666666666665333 334444443321 12244555556666666666666666
Q ss_pred HHHHHHh
Q 008249 388 FLLSMLE 394 (572)
Q Consensus 388 ~~~~~~~ 394 (572)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-08 Score=102.45 Aligned_cols=154 Identities=11% Similarity=-0.002 Sum_probs=101.5
Q ss_pred CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 008249 131 GGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHL 210 (572)
Q Consensus 131 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 210 (572)
.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..+..+ .+...|..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367777777777776652 33566777777778888888888888888777665 3567777777788888888888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHH
Q 008249 211 FSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN---GDKFQALALWNDM 287 (572)
Q Consensus 211 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 287 (572)
|++..+.. +.+...+..+..++.+.|++++|.+.++++++..+ .+...+..+...+... |+.++|.+.+++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP----EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88777653 22566777777788888888888888888877665 5677777788888887 8888888888877
Q ss_pred HhCC
Q 008249 288 FQKN 291 (572)
Q Consensus 288 ~~~~ 291 (572)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 7664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.6e-08 Score=92.09 Aligned_cols=124 Identities=10% Similarity=-0.057 Sum_probs=54.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHH
Q 008249 339 NCLCKQGKLDEASHFYGVLSKT----GVAP-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV---VP--EPHIWNVII 408 (572)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li 408 (572)
..|...|++++|...+.+.... +-.+ -..+|+.+...|...|++++|+..+++..+... .+ ...++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666554432 1000 123445555555555555555555555443210 00 012344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 409 DGYGRCGDLSNAFSIRDLMLSFGVSS-----NVFTFNALILAETRGGSIFDAFSLKKEML 463 (572)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 463 (572)
..|.. |++++|...|++..+..... ...+++.+...|...|++++|...|++..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444 55555555554443311000 02334444444444445555544444444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.83 E-value=6.8e-07 Score=83.93 Aligned_cols=163 Identities=9% Similarity=-0.049 Sum_probs=116.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 008249 407 IIDGYGRCGDLSNAFSIRDLMLSFGV-SSNV----FTFNALILAETRGGSIFDAFSLKKEMLLDGIF-PD----VFTYNL 476 (572)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 476 (572)
.+..+...|++++|...++...+... .|+. ..+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776322 2221 12334666667778888998888888874222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hHHHH
Q 008249 477 LIGASCNLGHIHLALQLYDEMLR----R-GITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTL----GLAID-HIPFR 545 (572)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 545 (572)
+...|...|++++|...|+++.+ . +..+.. .+|..+...|.+.|++++|.+.+++..+. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999999988874 1 112222 47788899999999999999999888753 22222 45788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHh
Q 008249 546 ILKKRYRRMKE-SDKARDIHQKWLL 569 (572)
Q Consensus 546 ~l~~~~~~~g~-~~~A~~~~~~~l~ 569 (572)
.++.++.+.|+ +++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999994 6999999998865
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-07 Score=83.12 Aligned_cols=89 Identities=10% Similarity=-0.171 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008249 406 VIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG 485 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 485 (572)
.+...+...|++++|...|++.. .|+...+..+...+...|++++|...+++..+... .+...|..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcc
Confidence 34444445555555555554432 23444555555555555555555555555444321 13444444455555555
Q ss_pred CHHHHHHHHHHHHH
Q 008249 486 HIHLALQLYDEMLR 499 (572)
Q Consensus 486 ~~~~A~~~~~~m~~ 499 (572)
++++|...|++..+
T Consensus 86 ~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 86 KYDLAIKDLKEALI 99 (213)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 55555555555444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.4e-07 Score=87.75 Aligned_cols=161 Identities=9% Similarity=-0.049 Sum_probs=84.9
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCC---CC--CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CCCCccHHHHHHHHH
Q 008249 197 GYCRVNELDKALHLFSTMANNGI---RP--NRVTHNILVHALCKKGLLGDAVKFLGEVLADDD--GKATSDVITSTILMD 269 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 269 (572)
.|...|++++|...|.+...... .+ -..+|..+...|...|++++|...|++.+.... ........+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455566666555555433210 00 123455555666666666666666665543211 010012355666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHH
Q 008249 270 SYFKNGDKFQALALWNDMFQKNI---QT--DIVAYNVLINGFCLNGDISSAFAYFCQMLKR----GFLPD-VITYNTLLN 339 (572)
Q Consensus 270 ~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~ 339 (572)
.|.. |++++|++.|++..+... .+ ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6666 666666666666554210 00 1345666666666777777777776666542 11111 124455555
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 008249 340 CLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~ 358 (572)
.+...|++++|...|++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 6666677777777777666
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=6.6e-07 Score=79.39 Aligned_cols=92 Identities=14% Similarity=-0.010 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC
Q 008249 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 236 (572)
..+...+...|++++|...|++.. .|+...|..+...+...|++++|.+.|++..... +.+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344444555555555555555442 2344455555555555555555555555554432 22344444455555555
Q ss_pred CChhHHHHHHHHHHhCC
Q 008249 237 GLLGDAVKFLGEVLADD 253 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~ 253 (572)
|++++|.+.|+++++..
T Consensus 85 ~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQL 101 (213)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 55555555555555443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-07 Score=75.35 Aligned_cols=97 Identities=13% Similarity=0.019 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGH 516 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 516 (572)
..+......|.+.|++++|++.|++.++.... +...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 45666677777777777777777777765322 56677777777777777777777777777653 44566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 008249 517 CARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 517 ~~~g~~~~A~~~~~~m~~~ 535 (572)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777777775
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-06 Score=79.90 Aligned_cols=166 Identities=8% Similarity=-0.025 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHH
Q 008249 404 WNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV-----FTFNALILAETRGGSIFDAFSLKKEMLLDGI---FPD--VFT 473 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~~ 473 (572)
+...+..+...|++++|...++...+....... ..+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455566667777777666665553222111 1233344556667777777777777764311 111 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-hH
Q 008249 474 YNLLIGASCNLGHIHLALQLYDEMLRR--GITPD----IITYTELIKGHCARGNMKEAEEVFAKIQTLG----LAID-HI 542 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~ 542 (572)
|+.+...|...|++++|...++++.+. ..+.+ ..++..+...|...|++++|.+.+++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777777788888888888888777621 01111 1467777788888888888888888776531 1111 45
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 008249 543 PFRILKKRYRRMKESDKA-RDIHQKWLL 569 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A-~~~~~~~l~ 569 (572)
+|..++..|.+.|+.++| ...+++.++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 677777788888888888 666777653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.4e-07 Score=76.01 Aligned_cols=96 Identities=14% Similarity=0.020 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008249 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 517 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 517 (572)
.+..+...+.+.|++++|...|+++....+. +...|..+..++...|++++|+..|+++.+.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 3444444455555555555555555543211 34445555555555555555555555555432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 008249 518 ARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 518 ~~g~~~~A~~~~~~m~~~ 535 (572)
..|++++|.+.|+++.+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-06 Score=78.80 Aligned_cols=164 Identities=12% Similarity=0.105 Sum_probs=104.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCHh----HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCcc----HHH
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGI-RPNRV----THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD----VIT 263 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~ 263 (572)
..+..+...|++++|..++++...... .|+.. .+..+...+...|++++|...+++++...... .+ ..+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--ccHHHHHHH
Confidence 345667788888888888888776421 22211 23345566666778888888888888743211 22 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-Hh
Q 008249 264 STILMDSYFKNGDKFQALALWNDMFQK-----NIQT-DIVAYNVLINGFCLNGDISSAFAYFCQMLKR----GFLPD-VI 332 (572)
Q Consensus 264 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~ 332 (572)
++.+...|...|++++|+..|+++.+. +..+ ...+|..+...|.+.|++++|+..+++..+. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 788888888888888888888877631 1111 2236667777777778888877777766542 11122 45
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 008249 333 TYNTLLNCLCKQGK-LDEASHFYGVLS 358 (572)
Q Consensus 333 ~~~~ll~~~~~~g~-~~~A~~~~~~~~ 358 (572)
+|..+...+.+.|+ +++|.+.+++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 56666677777773 477776666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=9.3e-06 Score=76.57 Aligned_cols=173 Identities=13% Similarity=0.034 Sum_probs=122.7
Q ss_pred CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC-ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-C-CHhHH
Q 008249 131 GGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG-DLEKADHVIREMSEMRPSPNCATYNAFITGYCRV-N-ELDKA 207 (572)
Q Consensus 131 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A 207 (572)
.+..++|+++++.++... +-+..+|+.--..+...| .+++++..++.+....| .+..+|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHH
Confidence 344467888888888764 345566777777777777 48888888888888877 4777888777777766 6 78888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChh--------HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC---
Q 008249 208 LHLFSTMANNGIRPNRVTHNILVHALCKKGLLG--------DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD--- 276 (572)
Q Consensus 208 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 276 (572)
+++++.+.+... -|..+|+.-.-++.+.|.++ ++.+.++++++..+ .|..+|+.....+.+.+.
T Consensus 145 L~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp----~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 145 IEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG----RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcccccc
Confidence 888888887642 36666766555555555555 78888888888765 778888887777777765
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 008249 277 ----KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD 311 (572)
Q Consensus 277 ----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (572)
++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 577777777777654 5566666665555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-05 Score=75.39 Aligned_cols=172 Identities=14% Similarity=0.100 Sum_probs=129.3
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC-C-ChhHHH
Q 008249 167 GDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN-ELDKALHLFSTMANNGIRPNRVTHNILVHALCKK-G-LLGDAV 243 (572)
Q Consensus 167 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g-~~~~a~ 243 (572)
+..++|+++++++....| -+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 445689999999999887 47788888888888888 599999999999987533 677788777667666 6 889999
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----
Q 008249 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF--------QALALWNDMFQKNIQTDIVAYNVLINGFCLNGD---- 311 (572)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 311 (572)
++++.+++..+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dp----kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 146 EYIHGSLLPDP----KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHTSSCT----TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHhCC----CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 99999998776 78888887776666666555 8888888888776 5677788877777766665
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 008249 312 ---ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGK 346 (572)
Q Consensus 312 ---~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 346 (572)
++++++.++++.... +-|...|+.+-..+.+.|.
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 577777777777652 3355666655555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.4e-07 Score=80.54 Aligned_cols=85 Identities=12% Similarity=-0.044 Sum_probs=35.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCH
Q 008249 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS----FGVS-SNVFTFNALILAETRGGSI 452 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~ll~~~~~~g~~ 452 (572)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..+ .+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 1112334445555555555555555555554433 1111 1123344444444444555
Q ss_pred HHHHHHHHHHH
Q 008249 453 FDAFSLKKEML 463 (572)
Q Consensus 453 ~~a~~~~~~m~ 463 (572)
++|...+++..
T Consensus 83 ~~A~~~~~~al 93 (203)
T 3gw4_A 83 DAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55544444433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.4e-07 Score=71.97 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
|......|.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..+++..+..| .+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 3344444444444444444444443331 22333344444444444444444444444433332 233333334444444
Q ss_pred cCCHhHHHHHHHHHH
Q 008249 201 VNELDKALHLFSTMA 215 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~ 215 (572)
.|++++|.+.|++..
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444444444444433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=5e-07 Score=82.34 Aligned_cols=189 Identities=11% Similarity=-0.119 Sum_probs=107.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHH-------HHHHHHcCCHHHHHHHHHHHHhCCCC-----CC----------
Q 008249 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTI-------IQGLCIHGDIVKAREFLLSMLEKSVV-----PE---------- 400 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~-----~~---------- 400 (572)
..++...|.+.|.++.... +-....|..+ ...+...++..+++..+....+..+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777888887777753 2234556655 34444444455555555544431100 00
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHH
Q 008249 401 -----PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD--VFT 473 (572)
Q Consensus 401 -----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~ 473 (572)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1223345556666777777777776665543 333244444456667777777777776444321 111 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 474 YNLLIGASCNLGHIHLALQLYDEMLRRGITPD--IITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55666667777777777777777664322133 235556666667777777777777777765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-06 Score=73.85 Aligned_cols=127 Identities=10% Similarity=-0.020 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008249 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 517 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 517 (572)
.+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 444555555566666666666666555321 145556666666666666666666666666542 334556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 008249 518 ARGNMKEAEEVFAKIQTLGLAIDHIPFR--ILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 518 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..|++++|.+.++++.+.. +.+...+. ..+..+...|++++|.+.+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666542 11333332 2233355566666666666654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-06 Score=74.00 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008249 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++.+...+ .+...+..+...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~a~~ 90 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHHHHHHH
Confidence 3444444444555555555555444432 11344444444455555555555555555544433 344445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 008249 271 YFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~ 290 (572)
+...|++++|...|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 55555555555555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-06 Score=69.97 Aligned_cols=95 Identities=18% Similarity=0.299 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMD 269 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (572)
.|..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++++....+ .+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~la~ 85 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP----NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC----ccHHHHHHHHH
Confidence 33334444444444444444444443321 11233333444444444444444444444443322 33334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 008249 270 SYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 270 ~~~~~g~~~~A~~~~~~~~~ 289 (572)
.+...|++++|...++++.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444444433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-07 Score=86.46 Aligned_cols=99 Identities=12% Similarity=-0.043 Sum_probs=74.1
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...+..+...+.+.|++++|+..|+..++.. +.+...|..+..+|.+.|++++|...+++..+..+ .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45567777777888888888888888877753 33667777777888888888888888888777665 46677777777
Q ss_pred HHHhcCCHhHHHHHHHHHHHC
Q 008249 197 GYCRVNELDKALHLFSTMANN 217 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~ 217 (572)
++...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888777653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-06 Score=80.30 Aligned_cols=164 Identities=9% Similarity=-0.010 Sum_probs=75.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC---CCC--HhHHHH
Q 008249 159 LVNELCKIGDLEKADHVIREMSEMRPSPNC-----ATYNAFITGYCRVNELDKALHLFSTMANNGI---RPN--RVTHNI 228 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ 228 (572)
.+..+...|++++|.+.+++..+..+.... ..+..+...+...|++++|+..+++...... .+. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 334444555555555555544443221110 1122333444455556666665555543211 111 234555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHh---CCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHHH
Q 008249 229 LVHALCKKGLLGDAVKFLGEVLA---DDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN----IQT-DIVAYN 300 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~ 300 (572)
+...|...|++++|...+++++. ..+........++..+...|...|++++|++.+++..+.. ... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 55556666666666666655552 1110100012455555666666666666666665554321 000 134455
Q ss_pred HHHHHHHhCCCHHHH-HHHHHHH
Q 008249 301 VLINGFCLNGDISSA-FAYFCQM 322 (572)
Q Consensus 301 ~li~~~~~~g~~~~a-~~~~~~m 322 (572)
.+...|.+.|++++| ...+++.
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Confidence 555555666666655 4444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-07 Score=77.72 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=86.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008249 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 423 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
.++++.+..+ .+...+..+...+...|++++|...|+........ +...|..+..++...|++++|+..|++..+..
T Consensus 9 ~~~~al~~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 4555554321 24556777788888899999999999988875432 67788888888999999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 503 TPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 503 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+.+...|..+..+|...|++++|.+.|++..+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 446678888899999999999999999988875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-07 Score=85.65 Aligned_cols=96 Identities=15% Similarity=-0.009 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 303 (572)
..+..+...+.+.|++++|...|++++...+ .+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3444444555555555555555555555433 445555555555555555555555555555443 33444555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 008249 304 NGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~ 324 (572)
.+|...|++++|...|.+..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=70.77 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=42.2
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..+ .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 33444444444445555555555554444431 22334444444444444444444444444444332 13334444444
Q ss_pred HHHhcCCHhHHHHHHHHHH
Q 008249 197 GYCRVNELDKALHLFSTMA 215 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~ 215 (572)
++...|++++|.+.|++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-06 Score=68.71 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=49.0
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
...|..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+..+ .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 3445555555555555555555555555432 22344455555555555555555555555544433 234444444455
Q ss_pred HHhcCCHhHHHHHHHHHHH
Q 008249 198 YCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~ 216 (572)
+...|++++|...|+++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 5555555555555554444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-07 Score=74.60 Aligned_cols=94 Identities=16% Similarity=-0.017 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 305 (572)
+..+...+.+.|++++|...|++++...+ .+...|..+..+|...|++++|++.|++..+.. +.++..|..+..+
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDF----YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 34444444444555555555554444433 444444445555555555555555555444443 2334444444445
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 008249 306 FCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~ 324 (572)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-06 Score=84.15 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008249 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
..|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 556666666666666666666666666542 3455666666666666666666666666666652 22444566666666
Q ss_pred HhcCCHHHH-HHHHHHHH
Q 008249 552 RRMKESDKA-RDIHQKWL 568 (572)
Q Consensus 552 ~~~g~~~~A-~~~~~~~l 568 (572)
.+.|+.++| ...|++|+
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666 44555554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=9e-07 Score=77.73 Aligned_cols=135 Identities=10% Similarity=-0.068 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--CC
Q 008249 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDD--GKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK----NIQ--TD 295 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~ 295 (572)
.++..+...+...|++++|...+++.+.... ...+....++..+...+...|++++|.+.+++..+. +-. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444445555555554444443100 000023344555555555555555555555544432 100 11
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 296 IVAYNVLINGFCLNGDISSAFAYFCQMLKR----GFLP-DVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 358 (572)
...+..+...+...|++++|...+++..+. +... -..++..+...+...|++++|...+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 233444555555555555555555554421 1000 01223444555555555555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=70.13 Aligned_cols=96 Identities=18% Similarity=0.073 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 008249 154 LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHAL 233 (572)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 233 (572)
..+..+...+.+.|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 3344444444444444444444444444332 233444444444444444444444444444321 11233344444444
Q ss_pred HhCCChhHHHHHHHHHHh
Q 008249 234 CKKGLLGDAVKFLGEVLA 251 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~ 251 (572)
...|++++|.+.|++.++
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=79.26 Aligned_cols=126 Identities=10% Similarity=-0.107 Sum_probs=59.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 008249 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT--DIVAYNVLINGF 306 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~ 306 (572)
+...+...|++++|.++|+.+...++ .+. ....+...+.+.+++++|+..|+...... .| ....+..+..++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p----~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGS----EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTC----HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC----chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 33445555555555555555544332 223 44444445555555555555555333211 01 012344455555
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 307 CLNGDISSAFAYFCQMLKRGFLPD--VITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555555555555555543221132 123333444455555555555555555553
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.1e-07 Score=76.24 Aligned_cols=118 Identities=14% Similarity=0.215 Sum_probs=51.6
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHhCCCh--hHHH
Q 008249 167 GDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHA-LCKKGLL--GDAV 243 (572)
Q Consensus 167 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~--~~a~ 243 (572)
|++++|...+++..+..| .+...|..+...+...|++++|...|++..... +.+...+..+..+ +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 444444444444444333 233444444444444444444444444444332 1133334444444 3344444 5555
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
..+++++...+ .+...+..+...|...|++++|...|+++.+.
T Consensus 102 ~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALDS----NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC----CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555444333 33444444555555555555555555554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=6.6e-05 Score=70.42 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=95.0
Q ss_pred hCCCHH-HHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 008249 308 LNGDIS-SAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGK----------LDEASHFYGVLSKTGVAPDQISYKTIIQG 375 (572)
Q Consensus 308 ~~g~~~-~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 375 (572)
+.|.++ +|+++++.+... .|+ ...|+.--..+...+. +++++.+++.+.... +-+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445443 677777777764 333 3334332222222222 455666666665542 2355555555555
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 008249 376 LCIHG--DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD-LSNAFSIRDLMLSFGVSSNVFTFNALILAETRG--- 449 (572)
Q Consensus 376 ~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--- 449 (572)
+...+ ++++++.++.++.+..+. +..+|+.-.-.+...|. ++++...++.+.+..+. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 55555 356666666666665544 55566555555555565 46666666666655443 555555554444333
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHH
Q 008249 450 -----------GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNL-----------GHIHLALQLYDEMLR 499 (572)
Q Consensus 450 -----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 499 (572)
+.++++++.+.......+. |...|+.+-..+.+. +.++++++.++++.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 2345555555555543222 344444443333333 234455555555554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-06 Score=70.32 Aligned_cols=25 Identities=12% Similarity=-0.056 Sum_probs=9.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHH
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMI 145 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~ 145 (572)
|..+...+...|++++|...|++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~ 39 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAI 39 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333333334444444444443333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-06 Score=68.73 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
.+..+...+...|++++|.+.+++.+...+ .+...+..+...+...|++++|...|++..
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDP----AYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcCc----cCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333333334444444444444444433322 233333334444444444444444444333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-06 Score=75.55 Aligned_cols=120 Identities=10% Similarity=0.132 Sum_probs=83.0
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH-HHhcCCH-
Q 008249 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS-YFKNGDK- 277 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 277 (572)
..|++++|...+++..... +.+...+..+...+...|++++|...|++++...+ .+...+..+... +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG----ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTCC
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhcCCcc
Confidence 4567777777777776653 33566777777777778888888888887777654 566677777777 6677777
Q ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 278 -FQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 278 -~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
++|...+++..+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777777664 445666777777777777777777777777765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-06 Score=82.15 Aligned_cols=123 Identities=10% Similarity=-0.083 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 008249 153 VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN--------------CATYNAFITGYCRVNELDKALHLFSTMANNG 218 (572)
Q Consensus 153 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (572)
...+..+...+.+.|++++|...|++..+..+... ...|..+..++.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44556666666666677777666666666544322 3455555555555555555555555555432
Q ss_pred CCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHH
Q 008249 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (572)
Q Consensus 219 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 280 (572)
+.+...+..+..++...|++++|...|+++++..+ .+..++..+..++.+.|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP----NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHH
Confidence 22444455555555555555555555555555443 4444555555555555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=7.4e-07 Score=73.92 Aligned_cols=97 Identities=8% Similarity=-0.082 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 008249 188 CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267 (572)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (572)
...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|++++...+ .+...+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p----~~~~~~~~l 95 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI----XEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCchHHHHH
Confidence 3344444555555555555555555554432 12444445555555555555555555555555443 344445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 008249 268 MDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
..+|...|++++|++.|++..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-06 Score=69.72 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----hHHHH
Q 008249 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG--LAID----HIPFR 545 (572)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~ 545 (572)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++..+.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345556666666677777777776666642 3345666666666777777777777766666531 0111 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 546 ILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
.++.++...|++++|++.|++.++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666666777777777777766653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-06 Score=70.40 Aligned_cols=99 Identities=19% Similarity=0.115 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
+...+..+...+...|++++|...|+........ +...|..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3455666777888899999999999998876432 67788888899999999999999999998863 556678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 008249 515 GHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+|...|++++|.+.|+++.+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998876
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=4e-07 Score=79.87 Aligned_cols=86 Identities=14% Similarity=-0.064 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 303 (572)
..+..+..++...|++++|...+++++...+ .+...+..+..+|...|++++|++.|++..+.. +.+...+..+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 163 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHH
Confidence 3444555555555555555555555555443 445555555555555555555555555555442 23344444444
Q ss_pred HHHHhCCCHHH
Q 008249 304 NGFCLNGDISS 314 (572)
Q Consensus 304 ~~~~~~g~~~~ 314 (572)
..+...++.++
T Consensus 164 ~~~~~~~~~~~ 174 (198)
T 2fbn_A 164 LCVNKLKEARK 174 (198)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 44444443333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=4.9e-07 Score=79.34 Aligned_cols=130 Identities=15% Similarity=0.016 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIF-P--------------DVFTYNLLIGASCNLGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 501 (572)
..+..+...+...|++++|...|++..+.... | ....|..+..++...|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34445555566666666666666666553211 1 02566777777778888888888888877652
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 008249 502 ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKAR-DIHQKWL 568 (572)
Q Consensus 502 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l 568 (572)
+.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|+.+++. ..+.+++
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777888888888888888888877752 224556666777776666666655 4455444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00017 Score=67.61 Aligned_cols=173 Identities=10% Similarity=0.044 Sum_probs=116.9
Q ss_pred HHhCCChh-hHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC----------hhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 128 LCLGGKIG-TALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD----------LEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 128 ~~~~g~~~-~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
..+.|.++ +|+.+++.++... |-+..+|+.--..+...+. +++++..++.+....| .+..+|+.-..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34556655 7888888888763 3344556554444333332 5778888888888776 47778887777
Q ss_pred HHHhcC--CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 197 GYCRVN--ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL-LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 197 ~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
.+.+.| .+++++++++.+.+... -|...|+.-.-++...|. ++++++.++.+++..+ .|..+|+.....+.+
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p----~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF----SNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHH
Confidence 777777 47888888888887653 367777777777777777 5888888888888776 777788777766665
Q ss_pred c--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 274 N--------------GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL 308 (572)
Q Consensus 274 ~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (572)
. +.++++++.+....... +-|...|+-+-..+.+
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHS
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 5 34667777777776654 4555666544333333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.7e-06 Score=66.23 Aligned_cols=92 Identities=16% Similarity=0.073 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
|..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++..+..| .+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 3333344444444444444444433331 12333333344444444444444444444333332 123333333333333
Q ss_pred cCCHhHHHHHHHHH
Q 008249 201 VNELDKALHLFSTM 214 (572)
Q Consensus 201 ~g~~~~A~~~~~~m 214 (572)
.|++++|...|++.
T Consensus 85 ~~~~~~A~~~~~~a 98 (126)
T 3upv_A 85 VKEYASALETLDAA 98 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHH
Confidence 34444444333333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=71.22 Aligned_cols=97 Identities=12% Similarity=-0.045 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 008249 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (572)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (572)
..+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|+.++...+ .+...+..+.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg 93 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI----NEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCTHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCcHHHHHHH
Confidence 344444455555555555555555555432 12444455555555555555555555555555443 4444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 008249 269 DSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+|...|++++|.+.|+...+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.6e-06 Score=67.01 Aligned_cols=107 Identities=10% Similarity=-0.004 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG--ITPD----IITYT 510 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~ 510 (572)
..+..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45566677777778888888888777765322 46677777778888888888888887776531 1111 13567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHH
Q 008249 511 ELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRI 546 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 546 (572)
.+..++...|++++|++.|++..+. .||+.+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 7777888888888888888888775 466655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.3e-06 Score=70.66 Aligned_cols=100 Identities=12% Similarity=-0.057 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008249 434 SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELI 513 (572)
Q Consensus 434 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 513 (572)
.+...+..+...+...|++++|...|++..+.... +...|..+..+|...|++++|+..|++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35667888889999999999999999999886432 68888999999999999999999999999863 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008249 514 KGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.+|...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999886
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.3e-06 Score=65.27 Aligned_cols=92 Identities=16% Similarity=0.017 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008249 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (572)
Q Consensus 227 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (572)
..+...+.+.|++++|...|++.++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+...+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAP----EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3333444444444444444444444332 334444444444444444444444444444432 22334444444444
Q ss_pred HhCCCHHHHHHHHHHHH
Q 008249 307 CLNGDISSAFAYFCQML 323 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m~ 323 (572)
...|++++|...|++..
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 44444444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.5e-06 Score=67.35 Aligned_cols=100 Identities=10% Similarity=-0.070 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008249 434 SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELI 513 (572)
Q Consensus 434 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 513 (572)
.+...+..+...+...|++++|...|++....... +...|..+..++...|++++|...+++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 46778888889999999999999999998876432 57888888999999999999999999988863 45678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008249 514 KGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.+|...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999988875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-05 Score=63.11 Aligned_cols=26 Identities=19% Similarity=-0.024 Sum_probs=10.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHh
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLA 251 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 251 (572)
+..+..++...|++++|.+.+++.++
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333333344444443333333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-05 Score=62.61 Aligned_cols=97 Identities=13% Similarity=-0.054 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 008249 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (572)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (572)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++++...+ .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a 79 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP----DWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc----ccHHHHHHHH
Confidence 445555555556666666666666655432 22445555555566666666666666666665443 4455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 008249 269 DSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
..+...|++++|.+.+++..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHc
Confidence 6666666666666666666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=3.5e-06 Score=67.04 Aligned_cols=95 Identities=12% Similarity=0.034 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 008249 475 NLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRM 554 (572)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 554 (572)
..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..++++.+.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 345556667777777777777776642 3456667777777777777777777777777652 22455666677777777
Q ss_pred CCHHHHHHHHHHHHhcC
Q 008249 555 KESDKARDIHQKWLLRN 571 (572)
Q Consensus 555 g~~~~A~~~~~~~l~~~ 571 (572)
|++++|...++++++.+
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 77777777777776544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.38 E-value=4e-06 Score=65.12 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChHHHHHHHH
Q 008249 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI--DHIPFRILKK 549 (572)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~ 549 (572)
..+..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|.+.++++.+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344455555556666666666666655542 3344555566666666666666666666666542 12 3445555666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcC
Q 008249 550 RYRRM-KESDKARDIHQKWLLRN 571 (572)
Q Consensus 550 ~~~~~-g~~~~A~~~~~~~l~~~ 571 (572)
.+.+. |++++|.+.++++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 66666 66666666666665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=7.8e-06 Score=69.02 Aligned_cols=98 Identities=8% Similarity=0.019 Sum_probs=50.3
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++..+..+ .+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34445555555555555555555555555442 22444555555555555555555555555555443 23444555555
Q ss_pred HHHhcCCHhHHHHHHHHHHH
Q 008249 197 GYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~ 216 (572)
++...|++++|...|++..+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 55555555555555555444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.32 E-value=8.4e-06 Score=63.26 Aligned_cols=94 Identities=6% Similarity=-0.024 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQT--DIVAYNVLI 303 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li 303 (572)
+..+...+...|++++|...++++++..+ .+...+..+...+...|++++|++.|++..+.. +. +...+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP----EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 33344444444444444444444444332 334444444444444444444444444444432 22 334444444
Q ss_pred HHHHhC-CCHHHHHHHHHHHHH
Q 008249 304 NGFCLN-GDISSAFAYFCQMLK 324 (572)
Q Consensus 304 ~~~~~~-g~~~~a~~~~~~m~~ 324 (572)
..+... |++++|.+.+.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 444444 444444444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=4e-05 Score=76.13 Aligned_cols=96 Identities=11% Similarity=-0.044 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-C-C--h
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRR--GIT--P-DIITYTELIKGHCARGNMKEAEEVFAKIQTL--GLA-I-D--H 541 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~ 541 (572)
++..+...+...|++++|..+++++... +.. + ...++..++..|...|++++|..++++.... .+. | . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4444555555555555555555544321 110 1 1234445555555555555555555544331 011 1 0 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 542 IPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
..+..++..+...|++++|...|.+.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 223334444445555555555554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=8.3e-06 Score=65.36 Aligned_cols=112 Identities=9% Similarity=-0.016 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG--ITPD----IITYT 510 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~ 510 (572)
..+..+...+...|++++|...+++..... ..+...+..+...+...|++++|...++++.+.. ..++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455566666677777777777777766643 2246666677777777777777777777776532 0112 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008249 511 ELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
.+..++...|++++|.+.++++.+. .|+......+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 7777788888888888888887775 34555554444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-05 Score=64.30 Aligned_cols=93 Identities=15% Similarity=-0.005 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 304 (572)
.+..+...+...|++++|...|+.++...+ .+...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCc----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 333333444444444444444444443332 333344444444444444444444444443332 223333444444
Q ss_pred HHHhCCCHHHHHHHHHHH
Q 008249 305 GFCLNGDISSAFAYFCQM 322 (572)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m 322 (572)
.+...|++++|...|.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 444444444444444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.3e-05 Score=63.48 Aligned_cols=98 Identities=13% Similarity=-0.004 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHH
Q 008249 187 NCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN----RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVI 262 (572)
Q Consensus 187 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 262 (572)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...+++.+...+ .+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~~~~ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG----GDVK 100 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS----CCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc----cCHH
Confidence 3445555555555555555555555555543 233 34455555555556666666666665555443 4455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 263 TSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+..+..++...|++++|...|++..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555566666666666666555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-05 Score=64.75 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI--QTD----IVAY 299 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 299 (572)
+..+...+...|++++|...+++++...+ .+...+..+...+...|++++|...+++...... .++ ..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 33344444444444444444444444332 3344444444444444444444444444433210 001 3334
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 300 NVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
..+...+...|++++|.+.|++..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444444444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-05 Score=62.55 Aligned_cols=98 Identities=10% Similarity=-0.051 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD----VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYT 510 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 510 (572)
+...+..+...+...|++++|...|++..+. .|+ ...|..+...+...|++++|...+++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4566667777777777777777777777764 344 5667777777778888888888888777642 34566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 511 ELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.+..++...|++++|.+.+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7788888888888888888888775
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.8e-06 Score=69.16 Aligned_cols=134 Identities=19% Similarity=0.101 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIF-PD----VFTYNLLIGASCNLGHIHLALQLYDEMLRR----GITP-DI 506 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 506 (572)
.++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+. +-++ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555566666666777776666665542100 11 235667777778888888888888877642 1111 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 507 ITYTELIKGHCARGNMKEAEEVFAKIQTL----GLAI-DHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
..+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++.++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46777888888888999888888887653 2111 1335677888888899999999999888653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-05 Score=62.25 Aligned_cols=99 Identities=15% Similarity=0.052 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 008249 440 NALILAETRGGSIFDAFSLKKEMLLDGIFPDV---FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPD---IITYTELI 513 (572)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~ 513 (572)
..+...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...|+++.+.. +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34566778889999999999998875322 22 467778888999999999999999988753 333 56788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008249 514 KGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
.++...|++++|...|+++.+. .|+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 8999999999999999999886 35544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00013 Score=72.49 Aligned_cols=199 Identities=14% Similarity=0.041 Sum_probs=116.4
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCC----------------hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC-C
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVPD----------------VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSP-N 187 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 187 (572)
.+.+.+.|++++|++.|..+.+..-... ..++..++..|.+.|++++|.+.+..+....... +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567888999999999999887532111 1235667788888888888888877765422211 1
Q ss_pred H----HHHHHHHHHHHhcCCHhHHHHHHHHHHH----CCCCCC-HhHHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCC
Q 008249 188 C----ATYNAFITGYCRVNELDKALHLFSTMAN----NGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLAD--DDGK 256 (572)
Q Consensus 188 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~ 256 (572)
. ...+.+-..+...|++++|..+++.... .+..+. ..++..+...+...|++++|..+++++... ....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1222233333345777777777766643 222222 345666777777777777777777766542 1101
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 257 ATSDVITSTILMDSYFKNGDKFQALALWNDMFQK----NIQTD--IVAYNVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
.+....++..++..|...|++++|...+++.... +.++. ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1134556677777777777777777777665432 11111 1334444455556666666666665554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=63.51 Aligned_cols=90 Identities=16% Similarity=0.051 Sum_probs=40.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|+++++..+ .+...+..+..++..
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP----KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHH
Confidence 3344444444444444444444432 11334444444444444444444444444444333 334444444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 008249 274 NGDKFQALALWNDMF 288 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~ 288 (572)
.|++++|+..+++..
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.6e-05 Score=78.06 Aligned_cols=132 Identities=11% Similarity=-0.011 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN--------------VFTFNALILAETRGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 465 (572)
....+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677778888888888888888888876432211 456666667777777777777777776664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 008249 466 GIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEE-VFAKIQ 533 (572)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 533 (572)
... +...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|+.+++.+ .+.+|.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 46666666777777777777777777766642 2334556666666666666665543 344443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.10 E-value=7.6e-06 Score=82.32 Aligned_cols=117 Identities=11% Similarity=-0.009 Sum_probs=55.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 446 ETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEA 525 (572)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 525 (572)
+.+.|++++|.+.+++..+.... +...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555555543211 34555555555555555555555555555542 23345555555555555555555
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHH--HHhcCCHHHHHHHHH
Q 008249 526 EEVFAKIQTLGLAIDHIPFRILKKR--YRRMKESDKARDIHQ 565 (572)
Q Consensus 526 ~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 565 (572)
.+.++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555541 1122233333333 445555555555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-05 Score=63.80 Aligned_cols=93 Identities=11% Similarity=-0.061 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 008249 476 LLIGASCNLGHIHLALQLYDEMLRRGITPD--------I-----ITYTELIKGHCARGNMKEAEEVFAKIQTL-----GL 537 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~ 537 (572)
.....+.+.|++++|+..|++.++. .|+ . ..|..+..++.+.|++++|+..+++.++. .+
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344444555555555555555542 222 1 25566666666666666666666666553 11
Q ss_pred CCC-hHHH----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 538 AID-HIPF----RILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 538 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
.|+ ...| ...+.++...|++++|+..|++.++.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 343 2345 56666666666666666666666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.2e-06 Score=65.55 Aligned_cols=87 Identities=14% Similarity=-0.016 Sum_probs=69.3
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 448 RGGSIFDAFSLKKEMLLDGI-FP-DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEA 525 (572)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 525 (572)
..|++++|+..|++..+.+. .| +...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35888999999999988531 13 36678888999999999999999999998863 55678888999999999999999
Q ss_pred HHHHHHHHHc
Q 008249 526 EEVFAKIQTL 535 (572)
Q Consensus 526 ~~~~~~m~~~ 535 (572)
.+.+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999886
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.09 E-value=9.9e-05 Score=58.94 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=8.9
Q ss_pred HHHHhCCChhhHHHHHHHHHh
Q 008249 126 RDLCLGGKIGTALWLRRKMIQ 146 (572)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~m~~ 146 (572)
..+.+.|++++|...|+.+.+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~ 30 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLE 30 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334444444444444444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.8e-05 Score=65.39 Aligned_cols=105 Identities=16% Similarity=0.062 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLD--------GI--------FP-DVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
....+......+.+.|++++|...|.+.... .. .| +...|..+..+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3556778888999999999999999998864 10 12 2467888899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008249 498 LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 498 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
++.. +.+...|..+..+|...|++++|...|++..+. .|+..
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 9863 556788999999999999999999999999987 45543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.8e-05 Score=64.90 Aligned_cols=134 Identities=13% Similarity=0.040 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--CCCccHH
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNGIR-PN----RVTHNILVHALCKKGLLGDAVKFLGEVLADDDG--KATSDVI 262 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~ 262 (572)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++.+..... ..+....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555555555555555554432100 01 124555555566666666666666655442110 0001134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 263 TSTILMDSYFKNGDKFQALALWNDMFQK----NI-QTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
.+..+...+...|++++|.+.+++..+. +. ......+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4555555666666666666665555432 10 0012233444444444555555555544433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=76.89 Aligned_cols=149 Identities=14% Similarity=0.044 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGA 480 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 480 (572)
...+..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445666667777777777777777766532 33221 122233333322211 1267788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHH-HHhcCCHH
Q 008249 481 SCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID-HIPFRILKKR-YRRMKESD 558 (572)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~~~ 558 (572)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988753 456788889999999999999999999998775 443 4445555544 23456778
Q ss_pred HHHHHHHHHHhcC
Q 008249 559 KARDIHQKWLLRN 571 (572)
Q Consensus 559 ~A~~~~~~~l~~~ 571 (572)
++...|++|+..+
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 8888888887654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.04 E-value=5.3e-05 Score=75.81 Aligned_cols=88 Identities=10% Similarity=-0.085 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 303 (572)
..|..+..++.+.|++++|+..+++++...+ .+...|..+..+|...|++++|+..|++..+.. +.+...+..+.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~ 392 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDS----ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3444455555555555555555555555443 444555555555555555555555555555443 23344444454
Q ss_pred HHHHhCCCHHHHH
Q 008249 304 NGFCLNGDISSAF 316 (572)
Q Consensus 304 ~~~~~~g~~~~a~ 316 (572)
..+.+.++.+++.
T Consensus 393 ~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 393 MCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.2e-05 Score=63.32 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=32.4
Q ss_pred CChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008249 132 GKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH 209 (572)
Q Consensus 132 g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (572)
|++++|+..|++.++.+ -+.+..++..+...|.+.|++++|+..|++..+..|. +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444432 1122233344444444444444444444444443331 23334444444444444444444
Q ss_pred HHHHHH
Q 008249 210 LFSTMA 215 (572)
Q Consensus 210 ~~~~m~ 215 (572)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=9.8e-05 Score=61.93 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+..+|..+..+|.+.|++++|+..+++..+.+ +.+...|..+..+|...|++++|...|++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44556666666666666666666666666554 445556666666666666666666666666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.8e-05 Score=79.54 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=75.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
..+.+.|++++|.+.|++..+.. +.+..++..+..++.+.|++++|.+.++++++..+ .+..++..+..+|...|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p----~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----KYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----TCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcC
Confidence 34445677777777777766642 22466677777777777777777777777777654 56677777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLING--FCLNGDISSAFAYFC 320 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 320 (572)
++++|++.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777776653 2334445555444 666777777777776
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.95 E-value=8.3e-05 Score=71.93 Aligned_cols=97 Identities=12% Similarity=-0.036 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCC--------------C-CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNG--------------I-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.|..+...+.+.|++++|++.|++..+.- . +.+...|..+..++.+.|++++|++.++++++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 35555566666666666666666655410 0 11233444444555555555555555555554433
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 255 GKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+...+..+..+|...|++++|++.|++..+.
T Consensus 305 ----~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 305 ----SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44445555555555555555555555554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00013 Score=70.64 Aligned_cols=121 Identities=13% Similarity=-0.002 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHh----------------CCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 224 VTHNILVHALCKKGLLGDAVKFLGEVLA----------------DDDGKATSDVITSTILMDSYFKNGDKFQALALWNDM 287 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 287 (572)
..+..+...+.+.|++++|.+.|+++++ ..+ .+..+|..+..+|.+.|++++|++.+++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP----VALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH----HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3466777888899999999999998886 222 44556666666666667777777766666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 008249 288 FQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 288 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 350 (572)
.+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...++.+++
T Consensus 300 l~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 300 LEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 6654 3455566666666666666666666666666542 12344444444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00046 Score=70.66 Aligned_cols=172 Identities=9% Similarity=-0.006 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 008249 382 IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD----------LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG- 450 (572)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g- 450 (572)
.++|++.++++.+.++. +...|+.--.++...|+ ++++...++.+.+..++ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34567777777766544 45555555555555555 77777777777776544 6777777777777777
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 008249 451 -SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG-HIHLALQLYDEMLRRGITPDIITYTELIKGHCAR--------- 519 (572)
Q Consensus 451 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--------- 519 (572)
+++++.+.++++.+.... |...|+.-...+.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 568888888888876544 6777777777777777 7888888888887753 45667777776666653
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 008249 520 -----GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESD 558 (572)
Q Consensus 520 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 558 (572)
+.++++.+.++++.... +-|...|..+...+.+.++.+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45788888888888763 336677888877777766643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00044 Score=56.10 Aligned_cols=111 Identities=19% Similarity=0.010 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 008249 415 GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLA 490 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A 490 (572)
+++++|...|++..+.|. |+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 467777888877777663 2333 5566666677777888887777754 56666677777766 6777888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 008249 491 LQLYDEMLRRGITPDIITYTELIKGHCA----RGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 491 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 536 (572)
...|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888777754 56666777777777 677778888877777765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00078 Score=68.99 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=122.8
Q ss_pred hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC----------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-
Q 008249 134 IGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD----------LEKADHVIREMSEMRPSPNCATYNAFITGYCRVN- 202 (572)
Q Consensus 134 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 202 (572)
.++|++.++.++... +-+..+|+.--.++.+.|+ ++++++.++.+.+..| .+..+|+.-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccc
Confidence 356788888888763 3355667766666666666 7888888888888777 47778888888888888
Q ss_pred -CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc------
Q 008249 203 -ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG-LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN------ 274 (572)
Q Consensus 203 -~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 274 (572)
+++++++.++++.+.... +..+|+....++.+.| .++++.+.++++++..+ .+..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p----~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF----SNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC----CCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC----CCccHHHHHHHHHHhhcccccc
Confidence 668888888888876533 6777877777777778 78888888888888766 7788888777776663
Q ss_pred --------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 008249 275 --------GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD 311 (572)
Q Consensus 275 --------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (572)
+.++++++.+++..... +-+...|+.+-..+.+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 44567777777666654 4456666665555555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00029 Score=57.80 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhC-------CCCCCCccHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLAD-------DDGKATSDVITS----TILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
.|..+..++.+.|++++|+..+++.++. .+ .+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p----d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ----DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS----THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC----chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5556666666666666666666666654 43 555566 6666666666666666666666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.6e-05 Score=72.25 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 304 (572)
.|..+..++.+.|++++|...+++++...+ .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~ 306 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE----KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRA 306 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 455556666666666666666666666543 455666666666666666666666666655442 222333333332
Q ss_pred H-HHhCCCHHHHHHHHHHHH
Q 008249 305 G-FCLNGDISSAFAYFCQML 323 (572)
Q Consensus 305 ~-~~~~g~~~~a~~~~~~m~ 323 (572)
. ....+..+.+...|..|.
T Consensus 307 l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 2 122334444445555444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00097 Score=54.03 Aligned_cols=111 Identities=11% Similarity=-0.066 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR----GGSIFDA 455 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a 455 (572)
+++++|++.|++..+.+.. .. . +...|...+.+++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-TH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3456666666666665522 22 2 5555555555666666666665543 44555555555555 5566666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 008249 456 FSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 456 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 501 (572)
.++|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666543 44455555555555 566666666666666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.3e-05 Score=59.83 Aligned_cols=93 Identities=9% Similarity=-0.018 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------hH
Q 008249 470 DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID-------HI 542 (572)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 542 (572)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.++++.+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34556666677777777777777777776642 445666777777777777777777777777765 333 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 008249 543 PFRILKKRYRRMKESDKARDIHQ 565 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~ 565 (572)
.+..+..++...|+.++|.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 45555666666666655554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00014 Score=56.92 Aligned_cols=99 Identities=15% Similarity=0.056 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 453 FDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKI 532 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 532 (572)
++|...|++..+... .+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357788888887543 267888899999999999999999999998863 456788899999999999999999999998
Q ss_pred HHcCC-CCChHHHHHHHHHHHh
Q 008249 533 QTLGL-AIDHIPFRILKKRYRR 553 (572)
Q Consensus 533 ~~~g~-~p~~~~~~~l~~~~~~ 553 (572)
.+... ..+......+...+.+
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHH
Confidence 87521 1233444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00024 Score=71.03 Aligned_cols=126 Identities=5% Similarity=-0.096 Sum_probs=71.1
Q ss_pred HHhcCCHhHHHHHHHHHHHCC---CCC----CHhHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCCccHHHHH
Q 008249 198 YCRVNELDKALHLFSTMANNG---IRP----NRVTHNILVHALCKKGLLGDAVKFLGEVLA-----DDDGKATSDVITST 265 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g---~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~ 265 (572)
+...|++++|..++++.++.. +.| ...+++.|..+|...|++++|..++++++. .|+ ..|....+++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 445677777777777665421 111 134566777777777777777777766654 233 2223445666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 266 ILMDSYFKNGDKFQALALWNDMFQK-----N--IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 266 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
.|...|...|++++|+.++++..+. | .+....+.+.+-.++...+.+++|..+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777666665431 2 111122334444455555556666666655543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00047 Score=68.90 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLR-----RG-ITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
+++.|...|...|++++|..++++..+ .| -.|+. .+++.|...|..+|++++|+.+++++.
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444444555554444444432 11 01111 334444555555555555555544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00049 Score=53.60 Aligned_cols=77 Identities=19% Similarity=0.129 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008249 242 AVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQ 321 (572)
Q Consensus 242 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 321 (572)
|...|+++++..+ .+...+..+...|...|++++|+..|++..+.. +.+...|..+...|...|++++|...|++
T Consensus 4 a~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQGT----DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444333 344444455555555555555555555444432 23344444444444555555555555444
Q ss_pred HH
Q 008249 322 ML 323 (572)
Q Consensus 322 m~ 323 (572)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00028 Score=54.39 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+..+...+...|++++|.+.|+++++..+ .+...+..+..++...|++++|++.+++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP----QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344444444444555555555554444333 34444444444455555555555555444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00074 Score=49.71 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=8.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTM 214 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m 214 (572)
.+...+...|++++|...|++.
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a 35 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKA 35 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHH
Confidence 3333333333444444333333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00076 Score=49.63 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 304 (572)
.+..+...+...|++++|...+++.++..+ .+...+..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 444444555555555555555555555433 344455555555555555555555555554443 233444444444
Q ss_pred HH
Q 008249 305 GF 306 (572)
Q Consensus 305 ~~ 306 (572)
.+
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00034 Score=57.27 Aligned_cols=96 Identities=11% Similarity=-0.020 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008249 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH----------IHLALQLYDEMLRRGITPDIITYTELIKGHCAR 519 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 519 (572)
+.+++|.+.++...+.... +...|..+..++...++ +++|+..|++.++.. +.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 3455555555555554322 45555555555554443 346777777766642 33446666777777655
Q ss_pred C-----------CHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 008249 520 G-----------NMKEAEEVFAKIQTLGLAIDHIPFRILKK 549 (572)
Q Consensus 520 g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 549 (572)
| ++++|++.|+++.+. .|+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3 677777777777775 566555544433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00053 Score=51.92 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChHHHHHHH
Q 008249 470 DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG-LAIDHIPFRILK 548 (572)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~ 548 (572)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.+++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 56778888899999999999999999988863 4456788889999999999999999999887642 123455555555
Q ss_pred HHHHhcC
Q 008249 549 KRYRRMK 555 (572)
Q Consensus 549 ~~~~~~g 555 (572)
..+...+
T Consensus 85 ~~l~~~~ 91 (100)
T 3ma5_A 85 DAKLKAE 91 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 5554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00042 Score=56.71 Aligned_cols=38 Identities=3% Similarity=-0.131 Sum_probs=17.2
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCh
Q 008249 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL 239 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 239 (572)
.+.+++|.+.++...+.. +.+...|..+..++...+++
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~ 52 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQF 52 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhccc
Confidence 344455555555544432 12444444444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0012 Score=49.87 Aligned_cols=64 Identities=22% Similarity=0.116 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777788888888888888888888775432 456777788888888888888888887765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0073 Score=56.88 Aligned_cols=143 Identities=9% Similarity=-0.011 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC--CHHHHH---HHHHHHHh
Q 008249 398 VPEPHIWNVIIDGYGR--C---GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR---GG--SIFDAF---SLKKEMLL 464 (572)
Q Consensus 398 ~~~~~~~~~li~~~~~--~---g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~g--~~~~a~---~~~~~m~~ 464 (572)
+.+...|...+.+... . .+..+|..+|++..+..+. ....|..+..+|.. .+ ...... ..++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4466777777765432 2 2346778888887775332 34455544444431 11 111111 11221111
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHH
Q 008249 465 D-GIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIP 543 (572)
Q Consensus 465 ~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 543 (572)
. ....+...|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1 113356667666666666677777777777777753 67666767777777777777777777777775 455555
Q ss_pred HH
Q 008249 544 FR 545 (572)
Q Consensus 544 ~~ 545 (572)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0017 Score=63.68 Aligned_cols=88 Identities=9% Similarity=0.015 Sum_probs=53.4
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HHHHHHH
Q 008249 448 RGGSIFDAFSLKKEMLLD---GIFPD----VFTYNLLIGASCNLGHIHLALQLYDEMLR-----RG-ITPDI-ITYTELI 513 (572)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~l~ 513 (572)
..|++++|..++++..+. -+.|+ ..+++.|...|...|++++|+.++++..+ .| -.|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456677777777665531 11222 34566677777777777777777776653 12 12222 4566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008249 514 KGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
..|..+|++++|+.+++++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 7777777777777777776664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.013 Score=55.14 Aligned_cols=144 Identities=13% Similarity=-0.015 Sum_probs=96.6
Q ss_pred CCCCHhhHHHHHHHHHH--cC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C--CHHHH---HHHHHHHH
Q 008249 362 VAPDQISYKTIIQGLCI--HG---DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC---G--DLSNA---FSIRDLML 428 (572)
Q Consensus 362 ~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g--~~~~A---~~~~~~~~ 428 (572)
.+.+...|...+.+... .+ +..+|..+|++..+..+. ....|..+.-+|... + ..... ...++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 45577788887776543 23 357889999999887544 445555554444311 1 11111 11222211
Q ss_pred h-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008249 429 S-FGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDII 507 (572)
Q Consensus 429 ~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 507 (572)
. ...+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++..+. .|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 1 1224577788888777777799999999999998864 78878888888888999999999999998874 67777
Q ss_pred HHH
Q 008249 508 TYT 510 (572)
Q Consensus 508 ~~~ 510 (572)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0037 Score=50.51 Aligned_cols=87 Identities=11% Similarity=-0.004 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 008249 451 SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG---HIHLALQLYDEMLRRGITP--DIITYTELIKGHCARGNMKEA 525 (572)
Q Consensus 451 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 525 (572)
....+.+-|.+....+. ++..+.-.+..++++.+ ++++++.++++..+.+ .| +...+..+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34556666666666554 56666667777777777 5567888888877753 24 345556677777888888888
Q ss_pred HHHHHHHHHcCCCCCh
Q 008249 526 EEVFAKIQTLGLAIDH 541 (572)
Q Consensus 526 ~~~~~~m~~~g~~p~~ 541 (572)
.+.++.+.+. .|+.
T Consensus 91 ~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHHH--CTTC
T ss_pred HHHHHHHHhc--CCCC
Confidence 8888888875 5644
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0018 Score=48.62 Aligned_cols=57 Identities=23% Similarity=0.203 Sum_probs=35.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 478 IGASCNLGHIHLALQLYDEMLRRGITPDII-TYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
...+...|++++|...++++.+.. +.+.. .|..+..+|...|++++|.+.|+++.+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344556666777777776666542 33445 6666666666777777777777766665
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0036 Score=61.46 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=70.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-H
Q 008249 442 LILAETRGGSIFDAFSLKKEMLLD---GIFPD----VFTYNLLIGASCNLGHIHLALQLYDEMLR-----RG-ITPDI-I 507 (572)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~ 507 (572)
.+..+...|++++|..++++..+. -+.|+ ..+++.|...|...|++++|+.+++++.+ .| -.|+. .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355566788999999999888753 12222 45778888888889999999999988774 22 12333 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 508 TYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+++.|...|...|++++|+.+++++.+.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6788888999999999999999988876
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0087 Score=44.28 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 469 PDVFTYNLLIGASCNLGH---IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 469 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.|...+..+..++...++ .++|..++++..+.. +-+......+...+...|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 466777777777765544 688999999888863 556677888888888999999999999998886
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0067 Score=59.49 Aligned_cols=87 Identities=7% Similarity=-0.074 Sum_probs=44.2
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHH
Q 008249 413 RCGDLSNAFSIRDLMLSF---GVSSN----VFTFNALILAETRGGSIFDAFSLKKEMLLD-----G-IFPD-VFTYNLLI 478 (572)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li 478 (572)
..|++++|..++++..+. -..|+ ..+++.|..+|...|++++|..++++..+. | -.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 345566666665554331 11111 234555566666666666666666655421 1 1222 34455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008249 479 GASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~ 499 (572)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 666666666666666655543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.11 Score=55.77 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=23.1
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDM 287 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 287 (572)
...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+
T Consensus 663 l~~~~~~~A~~~~~~~---------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE---------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh---------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555553221 34455555555555555555555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0042 Score=46.51 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=27.0
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVI-TSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+.+.|++++|.+.++++++..+ .+.. .+..+..+|...|++++|++.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEP----VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCS----STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444555555555555554433 3344 4455555555555555555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.027 Score=41.58 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=44.0
Q ss_pred CCHhHHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 221 PNRVTHNILVHALCKKGL---LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 221 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
.++..+..+..++...++ .++|..++++.++.++ .++.....+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp----~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP----YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355556666665544333 5677777777777665 666777777777777777777777777777653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.031 Score=54.80 Aligned_cols=92 Identities=10% Similarity=-0.032 Sum_probs=46.4
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCC----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHHHHH
Q 008249 232 ALCKKGLLGDAVKFLGEVLADDDG----KATSDVITSTILMDSYFKNGDKFQALALWNDMFQK-----N--IQTDIVAYN 300 (572)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~ 300 (572)
-+.+.|++++|+.++++.++.... ..+....+++.++..|...|++++|+.++++..+. | .+....+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556666666666666543211 11122345556666666666666666665555431 1 111223455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Q 008249 301 VLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 301 ~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
.|...|...|++++|+.++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555555555555555555543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.16 Score=54.65 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=22.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 377 CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLM 427 (572)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 427 (572)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555553222 24445555555555555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.024 Score=42.88 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008249 470 DVFTYNLLIGASCNLGHIHLALQLYDEMLRRG------ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
+..-+-.+...+.+.|++..|...|+.+.+.- -.+....+..+..++.+.|+++.|...++++.+. .|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCH
Confidence 45556678888999999999999999987631 1245678899999999999999999999999986 56543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.11 Score=41.86 Aligned_cols=86 Identities=17% Similarity=0.040 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 008249 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG---SIFDAFSLKKEMLLDGIFP--DVFTYNLLIGASCNLGHIHLAL 491 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 491 (572)
...+.+.|.+....+. ++..+...+..++++.+ +.++++.++++..+.+ .| +...+-.|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555444 46666666666677766 4557777777776653 23 2334445556667777777777
Q ss_pred HHHHHHHHCCCCCCH
Q 008249 492 QLYDEMLRRGITPDI 506 (572)
Q Consensus 492 ~~~~~m~~~g~~p~~ 506 (572)
+.++.+.+. .|+.
T Consensus 92 ~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 92 KYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHhc--CCCC
Confidence 777777763 4543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.038 Score=42.85 Aligned_cols=84 Identities=11% Similarity=-0.047 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 008249 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL---ALQLYDEMLRRGITP--DIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~ 524 (572)
.....+.+-|.+....|. |+..+--.+..++.+..+... ++.++++..+.+ .| .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334445555554444333 455555556666666655444 666666665543 22 22333445556667777777
Q ss_pred HHHHHHHHHHc
Q 008249 525 AEEVFAKIQTL 535 (572)
Q Consensus 525 A~~~~~~m~~~ 535 (572)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.04 Score=41.64 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=47.0
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCC------CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCC
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKG------TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRP 184 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 184 (572)
.+...+..|...+.+.|++..|..+|+...+.- ..+....+..+..++.+.|+++.|...+++..+..|
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 345566778888888888888888888776531 123455666677777777777777777777766554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.13 Score=40.92 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 261 VITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
...|......-.++|+...|.+++......+
T Consensus 94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 94 AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 3344444444444444444444444444433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.36 Score=39.98 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=22.6
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008249 164 CKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTM 214 (572)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 214 (572)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 23445555555555555555555555444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.66 Score=36.14 Aligned_cols=138 Identities=13% Similarity=0.119 Sum_probs=68.8
Q ss_pred hCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008249 130 LGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH 209 (572)
Q Consensus 130 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (572)
-.|..++..++..+.... .+..-+|-+|--....-+-+...++++.+-.. -|.. ..|+......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHH
Confidence 345566666666655543 24444555554444444444444444443221 1110 2233333333
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 210 LFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 210 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
.+-.+- .+.......++.+...|+.++-.+++.+++.... +++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~----~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNE----VSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCC----CChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 332221 1333444455566666666666666666554333 5566666666666666666666666666666
Q ss_pred CCC
Q 008249 290 KNI 292 (572)
Q Consensus 290 ~~~ 292 (572)
.|+
T Consensus 154 kG~ 156 (172)
T 1wy6_A 154 KGE 156 (172)
T ss_dssp TTC
T ss_pred hhh
Confidence 653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.16 Score=45.83 Aligned_cols=86 Identities=12% Similarity=0.019 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CCHH
Q 008249 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFK-----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN-GDIS 313 (572)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 313 (572)
..|...++++++.++.- .+-..|..+...|.+ -|+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleLDP~~--~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLWPSY--QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHCTTH--HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhCCCc--ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 34555555555544311 234455566655555 256666666666665553111355555555555553 5666
Q ss_pred HHHHHHHHHHHCCC
Q 008249 314 SAFAYFCQMLKRGF 327 (572)
Q Consensus 314 ~a~~~~~~m~~~g~ 327 (572)
++.+.+++.+....
T Consensus 258 ~a~~~L~kAL~a~p 271 (301)
T 3u64_A 258 GFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHcCCC
Confidence 66666666655433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.32 E-value=3.7 Score=43.80 Aligned_cols=267 Identities=11% Similarity=0.002 Sum_probs=145.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-------CCCHhHHHHHH
Q 008249 268 MDSYFKNGDKFQALALWNDMFQKN--IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF-------LPDVITYNTLL 338 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------~p~~~~~~~ll 338 (572)
.-+....|+.++++..+......+ -.+....-..+.-+....|..+++..++.......- .+....-..+.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 334566777777777776655421 011222333344456666766677777776654311 01111122222
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHh
Q 008249 339 NCLCKQGK-LDEASHFYGVLSKTGVAPDQISYK--TIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID--GYGR 413 (572)
Q Consensus 339 ~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~ 413 (572)
-+++-.|. -+++.+.+..+....- +...... ++...+...|+.+....++..+.+.. +......+.. ++..
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 23332332 2455555555554321 1111122 22223445677777777777776642 3333333333 4447
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 414 CGDLSNAFSIRDLMLSFGVSSNVFTFN---ALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLA 490 (572)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (572)
.|+.+.+..+.+.+... ..|. .-|. .+.-+|+..|+.....++++.+... ...+......+.-++...|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 78989888888888763 1222 2232 3334567778887777788888865 222344444444455567777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChHHHH
Q 008249 491 LQLYDEMLRRGITPDIITYTELIKGHCARGNM-KEAEEVFAKIQTLGLAIDHIPFR 545 (572)
Q Consensus 491 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~ 545 (572)
.++++.+.+.+ .|.+..-..+.-+....|.. .+|...+..+.. .+|..+-.
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq 665 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQ 665 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHH
Confidence 88877666653 55555555555566666654 578888888865 34544433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0004 Score=66.70 Aligned_cols=215 Identities=14% Similarity=0.085 Sum_probs=115.7
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
|+..|..+|.+..+.|++++-++.+...++.. .++..=+.|+-+|++.++..+- ++.. ..||..-...+..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~el----Eefl---~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL----EEFI---NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTT----TSTT---SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHH----HHHH---cCCCcccHHHHHH
Confidence 44456777777777777777777776655542 2344445777777777776554 2222 2355555556666
Q ss_pred HHHhcCCHhHHHHHHHHHHHCC--------------------CCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 008249 197 GYCRVNELDKALHLFSTMANNG--------------------IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK 256 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 256 (572)
-|...|.++.|.-+|..+.... -.-++.||..+-.+|...+++.-|...--.++-... .
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad-e 231 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD-E 231 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS-C
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH-H
Confidence 6666666666665555432110 022455666666666666666655444433333221 1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCC------
Q 008249 257 ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR-GFLP------ 329 (572)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p------ 329 (572)
...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- ++++..+.++..-.+ +++-
T Consensus 232 -------L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 232 -------LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp -------CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred -------HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1234555666777777777776665332 34555666665555543 455555544433222 1110
Q ss_pred CHhHHHHHHHHHHHcCCHHHH
Q 008249 330 DVITYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 330 ~~~~~~~ll~~~~~~g~~~~A 350 (572)
....|.-++-.|++-.+++.|
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHH
Confidence 123345555555555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=1.1 Score=37.14 Aligned_cols=100 Identities=12% Similarity=0.171 Sum_probs=53.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 008249 271 YFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 350 (572)
....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666665554 2455666666666666666666666655432 23344444555555555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 008249 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLS 391 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 391 (572)
.++-+.....| -++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54444444332 123333344445666666666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.15 Score=46.02 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=80.9
Q ss_pred CHHhHHHHHHH-HHhC--CC------hhhHHHHHHHHHhCCCCCC---hhhHHHHHHHHHHc-----CChhHHHHHHHHH
Q 008249 117 DYRRHVAVIRD-LCLG--GK------IGTALWLRRKMIQKGTVPD---VLTHNYLVNELCKI-----GDLEKADHVIREM 179 (572)
Q Consensus 117 ~~~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~ 179 (572)
....|..++.+ +... |. ...|..++++.++. .|+ ...|..+...|.+. |+.++|.+.|++.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 33467766653 3332 43 45666777777775 355 56889999999994 9999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHCCCC--CCHhHHH
Q 008249 180 SEMRPSPNCATYNAFITGYCRV-NELDKALHLFSTMANNGIR--PNRVTHN 227 (572)
Q Consensus 180 ~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~--p~~~~~~ 227 (572)
++.+|.-+..++......+++. |+.+++.+.+++....... |+....+
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9987755678888888999885 9999999999999987655 5544333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.27 Score=39.14 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHHHCC
Q 008249 435 NVFTFNALILAETRGGSI------FDAFSLKKEMLLDGIFPDVF-TYNLLIG------ASCNLGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~~p~~~-~~~~li~------~~~~~g~~~~A~~~~~~m~~~g 501 (572)
|..+|-..+....+.|++ ++..++|++.... ++|+.. .|...+. .+...+++++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444555555555555555 5555566655543 333310 1111111 1123478899999999987642
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008249 502 ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 502 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
-.- ...|......-.++|+...|.+++.+....+.+| ...+...+..+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 222 7778888888889999999999999999876544 33455444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=1.1 Score=34.95 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=81.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008249 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFS 457 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 457 (572)
-.|.+++..++..+..... +..-||-+|--....-+-+-..++++.+-+. .| ....|++.....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHH
Confidence 3566666666666665532 3344554544444444545555555544331 11 123445555444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008249 458 LKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 537 (572)
Q Consensus 458 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 537 (572)
.+-.+- .+.......++.+...|+-+.-.+++.++... .+|++.....+..+|.+-|+..+|.+++.++-+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 443322 24445566677777777777777777775443 367777777777888888888888888887777765
Q ss_pred C
Q 008249 538 A 538 (572)
Q Consensus 538 ~ 538 (572)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.48 Score=49.46 Aligned_cols=126 Identities=13% Similarity=0.050 Sum_probs=82.0
Q ss_pred HHHHHHHcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHC------CCCCC-H------
Q 008249 159 LVNELCKIGD-LEKADHVIREMSEMRPSPNCATYNAFITGYCRVN-ELDKALHLFSTMANN------GIRPN-R------ 223 (572)
Q Consensus 159 li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~-~------ 223 (572)
++..+...|+ .+.|..+|+++....|..+......++..+...+ +--+|.+++.+..+. ...+. .
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3333444555 5789999999988765433333333444333333 233555555554321 11211 1
Q ss_pred ----hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 224 ----VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 224 ----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
.....-...+...|+++.|+++-++.+...+ .+..+|..|..+|...|+++.|+-.++.+.
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP----seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL----DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc----hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1122224556778999999999999998665 889999999999999999999999998874
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.18 E-value=7.1 Score=41.71 Aligned_cols=260 Identities=11% Similarity=-0.051 Sum_probs=142.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------CCCHhhHHHHHHH
Q 008249 305 GFCLNGDISSAFAYFCQMLKRGFLPDV--ITYNTLLNCLCKQGKLDEASHFYGVLSKTGV-------APDQISYKTIIQG 375 (572)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li~~ 375 (572)
+....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 456678888887777665542111122 2223333445566666677777766554321 0111222233333
Q ss_pred HHHcCC-HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 376 LCIHGD-IVKAREFLLSMLEKSVVPEP--HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSI 452 (572)
Q Consensus 376 ~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 452 (572)
+.-.|. -+++.+.+..+...... .. ..--++...+...|+.+....++..+.+.. .-+..-...+.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333332 34666777776654211 11 112233444567788888888888776642 11222233333445577899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008249 453 FDAFSLKKEMLLDGIFPDVFTYN--LLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFA 530 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 530 (572)
+.+..+++.+... ..|....-. .+.-+|+..|+.....++++.+.+.. ..++.-...+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 9999998888764 222222222 34456778899888888999988742 3344444444445556777777777777
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 008249 531 KIQTLGLAIDHIPFRILKKRYRRMKES-DKARDIHQKWLL 569 (572)
Q Consensus 531 ~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~l~ 569 (572)
.+.+.+ .|...--..+.-+....|+. .+|...++.+..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666653 33333222333344444443 678888887753
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.08 E-value=4.8 Score=39.38 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 275 GDKFQALALWNDMFQK-----NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
|++++|++.+-.+.+. +..........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5677777766555432 2334455566677777777777777666655443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.23 Score=38.48 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=26.1
Q ss_pred CChhhHHHHHHHHHHcCChhH---HHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008249 151 PDVLTHNYLVNELCKIGDLEK---ADHVIREMSEMR-PSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 151 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
++..+-..+..++.+..+..+ ++.+++.+.+.+ |.........+.-++.+.|++++|.+.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444444443332 444444444432 111222233333344444444444444444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.48 E-value=1.3 Score=34.96 Aligned_cols=72 Identities=7% Similarity=-0.005 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 008249 468 FPDVFTYNLLIGASCNLGH---IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDH 541 (572)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 541 (572)
.|+..+--.+..++.+..+ ..+++.++++..+.+-.-.....-.|.-++.+.|++++|.++.+.+.+. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 5666666666777777654 4467778888776431112344455667788888888888888888876 5644
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.72 Score=35.91 Aligned_cols=75 Identities=8% Similarity=0.003 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008249 466 GIFPDVFTYNLLIGASCNLGH---IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
+-.|+..+--.+..++.+..+ ..+++.++++..+.+-.-....+-.|.-++.+.|++++|.++.+.+.+. .|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 344555555556666666554 3457777777766531112344556667777888888888888777775 55443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.03 E-value=6.7 Score=38.36 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008249 345 GKLDEASHFYGVLSKT-----GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLE 394 (572)
Q Consensus 345 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 394 (572)
|+++.|.+.+-.+.+. +..........++..+...|+++...+.+.-+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5667776666555432 2333455666777777777777777666655544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=1.9 Score=41.46 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHhH
Q 008249 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK-----RGFLPDVIT 333 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 333 (572)
+...++..+...|++++++..+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556677778888888888887777654 56777888888888888888888888877654 377776554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.48 E-value=2.4e-05 Score=74.90 Aligned_cols=264 Identities=12% Similarity=0.094 Sum_probs=162.3
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
+..|..|..+..+.|++.+|+.-|- +. .|+..|..+|.+..+.|.+++-...+...++..-+|.+ =+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHH
Confidence 3469999999999999988876552 22 47778889999999999999998888777665444433 3578999
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCH
Q 008249 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK 277 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (572)
|++.++..+-.+++ -.||..-...+.+-|...|.++.|.-+|..+. -|..|...+.+.|++
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is------------N~akLAstLV~L~~y 186 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC------------CCTTTSSSSSSCSGG
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc------------cHHHHHHHHHHHHHH
Confidence 99999876654443 24677677788888889999988888875442 234444555666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008249 278 FQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVL 357 (572)
Q Consensus 278 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 357 (572)
..|.+.-++ .-++.||-.+-.+|...+.+.-|.-.--.++-. || -...++..|-..|.+++-..+++.-
T Consensus 187 q~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 655543222 235667777777777777666554433333311 11 1223455566677777776666665
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHH
Q 008249 358 SKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP-------EPHIWNVIIDGYGRCGDLSNAF 421 (572)
Q Consensus 358 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~ 421 (572)
... -......|+-|.-.|++- +.++..+.++....+=-.| ....|.-++-.|..-.+++.|.
T Consensus 256 lgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 256 LGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 532 234556666666555543 3344444333222211011 2233555555566555555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.53 E-value=1.4 Score=45.90 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=36.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 478 IGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKI 532 (572)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 532 (572)
.+.|...|+++.|+++-++.+.. .+.+..+|..|..+|...|+++.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455667777777777777764 2444577777777777777777777766655
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.39 E-value=2.1 Score=41.15 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChHHH
Q 008249 475 NLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT-----LGLAIDHIPF 544 (572)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 544 (572)
..++..+...|++++|...+..+.... +.+...|..++.+|.+.|+..+|.+.|+++.+ .|+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345556666777777777766666542 44666777777777777777777777766543 3677766643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.68 E-value=6.6 Score=28.75 Aligned_cols=45 Identities=4% Similarity=0.121 Sum_probs=21.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 490 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
..+-++.+....+.|++.+..+.+++|.+-+++.-|+++++-.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333443444445555555555555555555555555544443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.03 E-value=15 Score=41.05 Aligned_cols=195 Identities=15% Similarity=0.075 Sum_probs=115.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH--------------------
Q 008249 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN-------------------- 216 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------- 216 (572)
..++..+.+.+..+-+.++.... +.+...-..+..++...|++++|.+.|.+...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555666667776665544433 12333334555666777777777777755411
Q ss_pred CC--CCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008249 217 NG--IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD--VITSTILMDSYFKNGDKFQALALWNDMFQKNI 292 (572)
Q Consensus 217 ~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 292 (572)
.. ...-..-|..++..+-+.+.++.+.++-..+++..... .++ ...|..+.+.+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 00 01123457778888888888888888887777644311 122 23578888888899999999998888877643
Q ss_pred CCCHHHHHHHHHHHHhCCCH------------HHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 008249 293 QTDIVAYNVLINGFCLNGDI------------SSAFAYFCQMLKRG--FLPDVITYNTLLNCLCKQGKLDEA-SHFYGVL 357 (572)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~------------~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A-~~~~~~~ 357 (572)
-......|+..+|..|.. ++..+++..-.+.. +.....-|..|-.-+...|++..| .-+|+.+
T Consensus 970 --r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 345666677766665543 44444444322211 111123345555556677777665 4456665
Q ss_pred Hh
Q 008249 358 SK 359 (572)
Q Consensus 358 ~~ 359 (572)
.+
T Consensus 1048 ~R 1049 (1139)
T 4fhn_B 1048 SR 1049 (1139)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.75 E-value=11 Score=42.14 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC---------------
Q 008249 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG--------------- 255 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--------------- 255 (572)
...++..+...+..+-+.++.... +.++..--.+..++...|++++|.+.|.+....-..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 335677788888888887755433 335555556778899999999999999775321000
Q ss_pred ----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 008249 256 ----KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI----VAYNVLINGFCLNGDISSAFAYFCQMLKRGF 327 (572)
Q Consensus 256 ----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 327 (572)
....-..-|..++..+-+.+.++.+.+.-....+...+.+. ..|..+.+++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 00012346889999999999999999988877764322221 2578899999999999999999988877644
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHH
Q 008249 328 LPDVITYNTLLNCLCKQGKLDEAS 351 (572)
Q Consensus 328 ~p~~~~~~~ll~~~~~~g~~~~A~ 351 (572)
-...+..++..+|..|..+.-.
T Consensus 970 --r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChhhhh
Confidence 3556777888888777765543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.80 E-value=11 Score=29.35 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008249 171 KADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 171 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
+++.+++.+.+.++......+..+.-++.+.|++++|.+..+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444433322233333444444445555555555444443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.72 E-value=5.8 Score=35.23 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=78.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhc
Q 008249 444 LAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI----ITYTELIKGHCAR 519 (572)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~ 519 (572)
....+.|+++++++....-++..+. |...-..|+..+|-.|+++.|.+-++...+. .|+. .+|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH---
Confidence 4566889999999999988887544 7888889999999999999999999988874 4544 3444444432
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----ChHHHHHHHHHHH--hcCCHHHHHHHHHHHHhc
Q 008249 520 GNMKEAEEVFAKIQTLGLAI-----DHIPFRILKKRYR--RMKESDKARDIHQKWLLR 570 (572)
Q Consensus 520 g~~~~A~~~~~~m~~~g~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~l~~ 570 (572)
..=.+...-+-.| ...-...++.++. ..|+.++|.++-.++++.
T Consensus 79 -------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 -------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1112222222222 2233446666655 469999999998888654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.62 E-value=8.7 Score=28.12 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (572)
+.-+..+-++.+...++.|++....+.+++|-+.+++.-|.++|+..+.. +.+....|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 45566666777777777777777777777777777777777777766654 222333455544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.60 E-value=6.2 Score=32.09 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHHHcCChhHHHHHHHHHhh
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG-TVPDV-------LTHNYLVNELCKIGDLEKADHVIREMSE 181 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 181 (572)
++-.-+..+...|.++.|.-+.+.+.... ..|+. .++..+.+++...|++.+|...|++..+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45556777888899999888777755431 12231 2556778889999999999999988643
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.97 E-value=11 Score=29.23 Aligned_cols=58 Identities=3% Similarity=0.057 Sum_probs=30.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 008249 490 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILK 548 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 548 (572)
..+-++.+...++.|++.+..+.+++|.+-+++.-|.++++-.+.+ ..+...+|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3444444444455566666666666666666666666666655543 222333444443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.71 E-value=4 Score=33.22 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 262 ITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
..---+..+|.+.+++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333445555666666666666555543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.45 E-value=27 Score=31.97 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRK 143 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~ 143 (572)
.|-++..-|.+++++++|+.++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 455566666666666666665443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.78 E-value=15 Score=28.55 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (572)
|.-+..+-++.+...++.|++......+++|-+.+++.-|.++|+-.+.+ +.+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44556666677777777777777777778887778888888877776654 233344455554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.37 E-value=33 Score=31.63 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH----HHHHHCCCCCCHhHHHHHH
Q 008249 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYF----CQMLKRGFLPDVITYNTLL 338 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~~~~~ll 338 (572)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++- +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44445555666666666666544322 1223334443333322 3333345555555555555
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----hCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008249 339 NCLCKQGKLD-EASHFYGVLS----KTG--VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY 411 (572)
Q Consensus 339 ~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 411 (572)
..+......+ .-..+.+.++ +.| ..-|+.....+...|.+.+++.+|...|- .+..+++..+..++--+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 5544433211 1111222221 112 23466777788888888888888877763 23333335554444333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 412 GRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEML 463 (572)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 463 (572)
...+...+ ++...-..++. |...++...|..++....
T Consensus 178 ~~~~~~~e--------------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHT--------------APLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGG--------------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCcc--------------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 33332111 12222233333 455677777777665554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 572 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-08 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 7e-08
Identities = 35/204 (17%), Positives = 67/204 (32%), Gaps = 10/204 (4%)
Query: 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLF 211
+ + L G++ A H + + P+ Y D+A+ +
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAY 226
Query: 212 STMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271
+ H L ++GL+ A+ + L ++
Sbjct: 227 LRALSLSPNHAV-VHGNLACVYYEQGLIDLAIDTYRRAIELQ----PHFPDAYCNLANAL 281
Query: 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD- 330
+ G +A +N + T + N L N G+I A + + L+ P+
Sbjct: 282 KEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEF 338
Query: 331 VITYNTLLNCLCKQGKLDEASHFY 354
++ L + L +QGKL EA Y
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHY 362
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 572 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.25 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.18 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.08 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.05 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.55 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.48 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.45 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.45 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.39 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.38 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.34 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.25 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.16 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.08 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.03 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.89 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.86 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.86 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.86 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.82 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.75 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.74 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.74 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.55 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.48 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.46 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.08 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.96 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.68 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.34 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.33 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.42 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.83 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.79 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.66 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.36 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.81 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.23 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.41 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-21 Score=191.52 Aligned_cols=382 Identities=15% Similarity=0.040 Sum_probs=208.3
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL 204 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 204 (572)
...+.+.|++++|.+.++++.+.. |-++.++..+...|.+.|++++|...++++.+..| .+..+|..+..++.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccc
Confidence 445556666777776666666542 33455666666666666666666666666666554 2455666666666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALW 284 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 284 (572)
++|.+.+....... +.+..............+....+............ ................+....+...+
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP----DLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT----TCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccc----ccccccccccccccccchhhhhHHHH
Confidence 66666666665543 22333333333334444444444444444433322 33333334444444455555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008249 285 NDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP 364 (572)
Q Consensus 285 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 364 (572)
....... +.+...+..+...+...|++++|...+++..+. . +.
T Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----------------------------------~-p~ 201 (388)
T d1w3ba_ 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----------------------------------D-PN 201 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----------------------------------C-TT
T ss_pred HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHh-----------------------------------C-cc
Confidence 4444332 223344444444445555555555555444433 1 12
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL 444 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 444 (572)
+...+..+...+...|++++|...+.+....+.. +...+..+...+.+.|++++|...|++..+..+. +..++..+..
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 279 (388)
T d1w3ba_ 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLAN 279 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHH
T ss_pred cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3334444444555555555555555555443322 3444555555555555555555555555554322 4455556666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 445 AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
.+...|++++|.+.++...... +.+...+..+...+...|++++|+..|++..+.. +.+..++..+..+|...|++++
T Consensus 280 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 357 (388)
T d1w3ba_ 280 ALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666655542 2345566666666666777777777777666532 3345566667777777777777
Q ss_pred HHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCC
Q 008249 525 AEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKE 556 (572)
Q Consensus 525 A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 556 (572)
|.+.|+++.+. .| +...|..++.+|.+.||
T Consensus 358 A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 358 ALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 77777777664 34 34566667777766654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.5e-22 Score=191.88 Aligned_cols=364 Identities=14% Similarity=0.051 Sum_probs=289.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
...+.+.|++++|.+.|+++.+.. +-+...+..+..++.+.|++++|...++++++..+ .+..++..++.+|.+.
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP----LLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHhhhh
Confidence 445567788888888888777653 22566777777788888888888888888887665 6677888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFY 354 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 354 (572)
|++++|++.+....+.. +.+...+..........+....+........... .................+....+...+
T Consensus 81 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHH
Confidence 88888888888887765 3444555555555556666666666665555443 233444455566677778888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008249 355 GVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS 434 (572)
Q Consensus 355 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 434 (572)
....... +.+...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...++.....+. .
T Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 235 (388)
T d1w3ba_ 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-h
Confidence 7776653 345677888888999999999999999999887544 677899999999999999999999999888654 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
+...+..+...+.+.|++++|...|++..+.... +..++..+...+...|++++|.+.++..... .+.+...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHH
Confidence 6778888999999999999999999999986432 5788999999999999999999999999876 3677889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 515 GHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
.+...|++++|.+.++++.+. .| +..++..++..|.+.|++++|.+.|+++++.++
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999886 45 566788999999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.6e-13 Score=127.01 Aligned_cols=230 Identities=13% Similarity=0.073 Sum_probs=156.4
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 122 VAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 122 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
-.....+.+.|++++|+..|+++++.. |.+..+|..+..++...|++++|...|++..+..| -+...|..+...+...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccc
Confidence 346677899999999999999999874 44678899999999999999999999999998776 4778899999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHH----------------HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH
Q 008249 202 NELDKALHLFSTMANNGIRPNRVTH----------------NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~----------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (572)
|++++|.+.+++..... |+.... ...+..+...+...+|.+.+.+++...+.. .+..++.
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~--~~~~~~~ 176 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS--IDPDVQC 176 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS--CCHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcc--cccccch
Confidence 99999999999987642 322111 011122233344556666666665544423 4455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC
Q 008249 266 ILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG 345 (572)
Q Consensus 266 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 345 (572)
.+...+...|++++|+..|++..... +-+...|..+...|...|++++|.+.|++..+.. +-+..++..+..+|.+.|
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g 254 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG 254 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCC
Confidence 66666666666666666666665543 3345556666666666666666666666665531 123445555666666666
Q ss_pred CHHHHHHHHHHHHh
Q 008249 346 KLDEASHFYGVLSK 359 (572)
Q Consensus 346 ~~~~A~~~~~~~~~ 359 (572)
++++|...|++.++
T Consensus 255 ~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 255 AHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.4e-13 Score=126.38 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=41.0
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
..+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...|.++++..+ .+...+..++..|...|
T Consensus 27 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 27 LRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP----DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc----ccccccccccccccccc
Confidence 33444455555555555544432 11334444444444455555555555554444333 33444444444444444
Q ss_pred CHHHHHHHHHHHHh
Q 008249 276 DKFQALALWNDMFQ 289 (572)
Q Consensus 276 ~~~~A~~~~~~~~~ 289 (572)
++++|.+.++....
T Consensus 102 ~~~~A~~~~~~~~~ 115 (323)
T d1fcha_ 102 LQRQACEILRDWLR 115 (323)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cccccccchhhHHH
Confidence 44444444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.1e-08 Score=96.52 Aligned_cols=303 Identities=13% Similarity=0.032 Sum_probs=151.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 008249 230 VHALCKKGLLGDAVKFLGEVLADDDGKATS-DVITSTILMDSYFKNGDKFQALALWNDMFQKNI-QTD----IVAYNVLI 303 (572)
Q Consensus 230 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li 303 (572)
...+...|++++|.+++++.+...+...++ ...++..+...|...|++++|+..|++..+... .++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 344555666666666666666554411000 023445555555666666666666555543210 001 12223333
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHHcC
Q 008249 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP---DQISYKTIIQGLCIHG 380 (572)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g 380 (572)
..+...|++..+...+...... ....+... ....+..+...+...|
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQL-------------------------------INEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------------------------------HHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------------------hHhcccchhhHHHHHHHHHHHHHHHhc
Confidence 4444445555554444443321 00011010 0122333444455555
Q ss_pred CHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHhcC
Q 008249 381 DIVKAREFLLSMLEKS----VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS----FGVSS--NVFTFNALILAETRGG 450 (572)
Q Consensus 381 ~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p--~~~~~~~ll~~~~~~g 450 (572)
+++.+...+....... .......+......+...++...+...+..... .+..+ ....+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 5555555555544321 111222334444445555666665555544332 11111 1223444555666777
Q ss_pred CHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCH
Q 008249 451 SIFDAFSLKKEMLLDGIFP---DVFTYNLLIGASCNLGHIHLALQLYDEMLR----RGITPD-IITYTELIKGHCARGNM 522 (572)
Q Consensus 451 ~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~ 522 (572)
++++|...++......... ....+..+...+...|++++|...++++.. .+..|+ ..++..+..+|...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 7777777777665432221 234455667777778888888877777653 233333 35667777788888888
Q ss_pred HHHHHHHHHHHHc----CCCC----ChHHHHHHHHHHHhcCCHHHHHHH
Q 008249 523 KEAEEVFAKIQTL----GLAI----DHIPFRILKKRYRRMKESDKARDI 563 (572)
Q Consensus 523 ~~A~~~~~~m~~~----g~~p----~~~~~~~l~~~~~~~g~~~~A~~~ 563 (572)
++|.+.+++..+. |... ....+..++..+...++.+++.+.
T Consensus 308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 8888888776543 2211 122344566667777777766543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.5e-09 Score=100.93 Aligned_cols=198 Identities=13% Similarity=0.065 Sum_probs=138.5
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC-ChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG-DLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
...|+.+...+.+.+.+++|+++++.+++.. |-+..+|+....++...| ++++|+..++...+..| -+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhH
Confidence 3466667677777788888888888888763 445667777777777765 47888888888877766 46778888888
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.+.+.|++++|++.++++.+.. +-+...|..+...+.+.|++++|.+.++++++.++ .+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p----~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV----RNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTC
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC----ccHHHHHHHHHHHHHccc
Confidence 8888888888888888887753 23577788888888888888888888888888765 677777777766666554
Q ss_pred ------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 277 ------KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 277 ------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
+++|++.+.+..+.. +.+...|+.+...+. ....+++.+.++...+
T Consensus 196 ~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 196 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLD 247 (315)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHH
T ss_pred cchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHH
Confidence 466777776666654 445556655544433 3334555565555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.4e-09 Score=98.43 Aligned_cols=233 Identities=11% Similarity=0.034 Sum_probs=152.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008249 154 LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN-ELDKALHLFSTMANNGIRPNRVTHNILVHA 232 (572)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 232 (572)
.+++.+...+.+.+.+++|+++++++.+..| -+..+|+....++...| ++++|+..++...+... -+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHH
Confidence 4555666667777777888888888877766 36677777777777665 47788888877766532 256677777777
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-
Q 008249 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGD- 311 (572)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 311 (572)
+.+.|++++|++.++++++..+ .+..+|..+...+.+.|++++|++.++++.+.+ +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp----~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDA----KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHhhccHHHHHHHHhhhhhhhh----cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcccc
Confidence 7777888888888888877665 677777778888888888888888888877765 4566677766666555544
Q ss_pred -----HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHc------
Q 008249 312 -----ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA-PDQISYKTIIQGLCIH------ 379 (572)
Q Consensus 312 -----~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~------ 379 (572)
+++|++.+.+..+.. +.+...|+.+...+. ....+++.+.++...+.... .+...+..+...|...
T Consensus 197 ~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~ 274 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence 467777777766652 234555555544433 33456666666666553222 2344455555555432
Q ss_pred ---CCHHHHHHHHHHHHhC
Q 008249 380 ---GDIVKAREFLLSMLEK 395 (572)
Q Consensus 380 ---g~~~~A~~~~~~~~~~ 395 (572)
..+++|.+++....+.
T Consensus 275 ~~~~~~~ka~~l~~~l~~~ 293 (315)
T d2h6fa1 275 NKEDILNKALELCEILAKE 293 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 2356677777665543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=3.6e-09 Score=98.13 Aligned_cols=221 Identities=12% Similarity=-0.006 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC--------------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 008249 312 ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG--------------KLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377 (572)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--------------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 377 (572)
.+.+..+|+++... ++.+...|...+..+-+.+ ..++|..++++..+...+.+...|...+..+.
T Consensus 32 ~~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45566777777665 2334455554444443322 23556667776665434445556666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHH
Q 008249 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILA-ETRGGSIFDAF 456 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~g~~~~a~ 456 (572)
..|+++.|..+++++++.........|...+..+.+.|+.+.|..+|+.+.+.++. +...|...... +...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 77777777777777766544433445666677777777777777777777665433 22333332222 23346677777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 457 SLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG-ITPD--IITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 457 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
.+|+.+.+.. ..+...|..+++.+...|+++.|..+|++..+.. ..|+ ...|...+..-...|+.+.+..+++++.
T Consensus 190 ~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777766642 2245666667777777777777777777766542 2222 2456666666666677777777777766
Q ss_pred Hc
Q 008249 534 TL 535 (572)
Q Consensus 534 ~~ 535 (572)
+.
T Consensus 269 ~~ 270 (308)
T d2onda1 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1e-08 Score=96.86 Aligned_cols=266 Identities=14% Similarity=0.046 Sum_probs=114.3
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCC----HhHHHHHHHH
Q 008249 162 ELCKIGDLEKADHVIREMSEMRPSPN----CATYNAFITGYCRVNELDKALHLFSTMANNGI-RPN----RVTHNILVHA 232 (572)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~ 232 (572)
.+...|++++|++++++..+..+..+ ..++..+...+...|++++|...|++..+... .++ ..++..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 33444444444444444444332211 12333444444455555555555544432110 000 1223334444
Q ss_pred HHhCCChhHHHHHHHHHHhC----CCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 008249 233 LCKKGLLGDAVKFLGEVLAD----DDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK----NIQTDIVAYNVLIN 304 (572)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 304 (572)
+...|++..+...+...+.. ...........+..+...+...|+++.+...+...... +.......+.....
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 45555555555555444321 11010112234444555555556666655555555432 11122233334444
Q ss_pred HHHhCCCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHH
Q 008249 305 GFCLNGDISSAFAYFCQMLKR----GFLPD--VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP---DQISYKTIIQG 375 (572)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~ 375 (572)
.+...++...+...+.+.... +..+. ...+......+...|++++|...+.......... ....+..+...
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 455555555555555443321 11110 1223333444555556666655555544332111 12233344555
Q ss_pred HHHcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 376 LCIHGDIVKAREFLLSMLE----KSVVP-EPHIWNVIIDGYGRCGDLSNAFSIRDLM 427 (572)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 427 (572)
+...|++++|...+++... .+..| ....+..+...|...|++++|...+++.
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555666666555555442 11111 1223444555555555655555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=7.7e-09 Score=95.81 Aligned_cols=185 Identities=15% Similarity=0.085 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008249 313 SSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSM 392 (572)
Q Consensus 313 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 392 (572)
++|..+|++..+...+.+...+...+....+.|+++.|..+|+.+.+........+|...+....+.|+.+.|.++|.++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45555666555443333444455555555666666666666666655432222335556666666666666666666666
Q ss_pred HhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 008249 393 LEKSVVPEPHIWNVIIDG-YGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDG-IFPD 470 (572)
Q Consensus 393 ~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~p~ 470 (572)
.+..+. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+...|+++.|..+|++..... ..|+
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 555433 22233222222 233456666666666665542 2245556666666666666666666666655542 2222
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 471 --VFTYNLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 471 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
...|...+..-...|+.+.+..+++++.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455555555556666666666666554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=8.8e-10 Score=103.77 Aligned_cols=213 Identities=7% Similarity=-0.059 Sum_probs=94.3
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCCCCccHHHHH-HHHHHHHhcCCHHHH
Q 008249 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKG--LLGDAVKFLGEVLADDDGKATSDVITST-ILMDSYFKNGDKFQA 280 (572)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A 280 (572)
+++|+.+++...+.. +-+...|..+..++...+ ++++|...+.+++...+ .+...+. .....+...+..++|
T Consensus 89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~----~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE----RNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc----hhhhhhhhHHHHHHHhccccHHH
Confidence 445555555554432 113344444444444433 24555555555555443 3333332 223344445555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 281 LALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
+..++.+.+.+ +-+...|+.+...+.+.|++++|...+....+. .|+ .......+...+..+++...+......
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 55555555443 334455555555555555554443333222211 010 011122233334444444444444443
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 361 GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 361 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
. +++...+..+...+...++.++|...+.+..+.++. +...+..+...+...|++++|...++...+
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 223333444444444455555555555555443322 334444455555555555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=8.2e-10 Score=104.01 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 476 LLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.++..+...|+.++|...+.+..... +.+..+|..++.++...|+.++|.+.++++.+.
T Consensus 247 ~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 247 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33344444444455555444444321 122334444444555555555555555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=3.4e-09 Score=95.56 Aligned_cols=97 Identities=16% Similarity=-0.002 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 008249 155 THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC 234 (572)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 234 (572)
+|..+...|.+.|++++|+..|++..+..| .+..+|+.+..++.+.|++++|++.|++..+... -+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHH
Confidence 344444455555555555555555555443 2444455555555555555555555555544321 12334444444455
Q ss_pred hCCChhHHHHHHHHHHhCC
Q 008249 235 KKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~ 253 (572)
..|++++|.+.|+..++..
T Consensus 117 ~~g~~~~A~~~~~~al~~~ 135 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD 135 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHhhc
Confidence 5555555555555554433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=6.3e-09 Score=93.71 Aligned_cols=96 Identities=13% Similarity=-0.110 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLIN 304 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 304 (572)
+|..+..+|.+.|++++|.+.|++.++..+ .++.+|+.+..+|.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC----CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHH
Confidence 444555566666666666666666666554 556666666666666666666666666666553 334555666666
Q ss_pred HHHhCCCHHHHHHHHHHHHHC
Q 008249 305 GFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~ 325 (572)
.+...|++++|...|+...+.
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhh
Confidence 666666666666666666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.8e-06 Score=72.94 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=70.1
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.+...|++++|++.|+++ .+|+..+|..+..++...|++++|++.|++.++.++ .+...|..+..+|.+.|+
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp----~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK----HLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh----hhhhhHHHHHHHHHhhcc
Confidence 444566666666666543 234555666666666666666666666666666554 556666666666666666
Q ss_pred HHHHHHHHHHHHhCC------------CC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 277 KFQALALWNDMFQKN------------IQ--T-DIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~------------~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+++|++.|++..... .. . ...++..+..++.+.|++++|.+.+......
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 666666666654321 00 0 0233445555666666666666666665554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=4.9e-06 Score=70.19 Aligned_cols=138 Identities=9% Similarity=-0.124 Sum_probs=69.3
Q ss_pred HHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 008249 126 RDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELD 205 (572)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 205 (572)
..+...|+++.|++.|+++ .+|++.+|..+..+|.+.|++++|++.|++..+..| .+...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHH
Confidence 3344555555555555432 134445555555555555555555555555555444 24445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008249 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWN 285 (572)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 285 (572)
+|++.|++..... +++... .+.. .+.........++..+..++.+.|++++|.+.+.
T Consensus 88 ~A~~~~~kAl~~~-~~n~~~------~~~~----------------~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~ 144 (192)
T d1hh8a_ 88 LAIKDLKEALIQL-RGNQLI------DYKI----------------LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 144 (192)
T ss_dssp HHHHHHHHHHHTT-TTCSEE------ECGG----------------GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccCchH------HHHH----------------hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555544321 111000 0000 0000000123456667777888888888888888
Q ss_pred HHHhCC
Q 008249 286 DMFQKN 291 (572)
Q Consensus 286 ~~~~~~ 291 (572)
......
T Consensus 145 ~A~~~~ 150 (192)
T d1hh8a_ 145 LATSMK 150 (192)
T ss_dssp HHHTTC
T ss_pred HHHhcC
Confidence 777654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=0.00024 Score=62.88 Aligned_cols=224 Identities=15% Similarity=0.016 Sum_probs=132.3
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHH----cCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCK----IGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
|+..+..|...+.+.|++++|++.|++..+.| +..++..|...|.. ..+...|...++.....+. .....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhh
Confidence 45567777778888889999999999888876 56666667777765 4577788888877766542 33344
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----hCCChhHHHHHHHHHHhCCCCCCCccHHHH
Q 008249 193 AFITGYCR----VNELDKALHLFSTMANNGIRPNRVTHNILVHALC----KKGLLGDAVKFLGEVLADDDGKATSDVITS 264 (572)
Q Consensus 193 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 264 (572)
.+...+.. ..+.+.|...++.....|.. .....+...+. .......+...+...... .+...+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~ 145 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL------NDGDGC 145 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc------cccchh
Confidence 44444433 45677788888877766532 22222322232 234455666666665552 344556
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 008249 265 TILMDSYFK----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL----NGDISSAFAYFCQMLKRGFLPDVITYNT 336 (572)
Q Consensus 265 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (572)
..|...|.. ..+...+...++...+.| +......+...|.. ..++++|+.+|.+..+.| +...+..
T Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~ 219 (265)
T d1ouva_ 146 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 219 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHH
Confidence 666666654 345566666666666544 44444445444443 345666666666666654 2334444
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhCC
Q 008249 337 LLNCLCK----QGKLDEASHFYGVLSKTG 361 (572)
Q Consensus 337 ll~~~~~----~g~~~~A~~~~~~~~~~~ 361 (572)
|...|.+ ..+.++|.++|++....|
T Consensus 220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 220 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 4444443 224555666666555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=1.3e-06 Score=79.47 Aligned_cols=132 Identities=11% Similarity=0.018 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCHH
Q 008249 333 TYNTLLNCLCKQGKLDEASHFYGVLSKT----GVAP-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV-----PEPH 402 (572)
Q Consensus 333 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ 402 (572)
.|......|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++..+.... ....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 3455555555566666666665555431 1111 1234555555555555555555555554432100 0112
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 403 IWNVIIDGYGR-CGDLSNAFSIRDLMLSF----GVSS-NVFTFNALILAETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 403 ~~~~li~~~~~-~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 464 (572)
++..+...|.. .|++++|...+++..+. +.++ -..++..+...+...|++++|...|+++..
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 23333333322 35555555555544321 1111 122344444555555555555555555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.5e-06 Score=65.43 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=39.3
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhH
Q 008249 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGD 241 (572)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 241 (572)
.+.+.|++++|+..|++..+..| .+...|..+..++...|++++|+..++...+.+ +.+...|..+..++...|++++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence 34444444444444444444333 234444444444444444444444444444332 1233444444444444444444
Q ss_pred HHHHHHHHHhCC
Q 008249 242 AVKFLGEVLADD 253 (572)
Q Consensus 242 a~~~~~~~~~~~ 253 (572)
|+..|++.++..
T Consensus 90 A~~~~~~a~~~~ 101 (117)
T d1elwa_ 90 AKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC
Confidence 444444444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=8e-07 Score=75.96 Aligned_cols=100 Identities=10% Similarity=-0.070 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008249 434 SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELI 513 (572)
Q Consensus 434 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 513 (572)
|+...+......|.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|+..|+++++.. +-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 67777888888999999999999999998876433 68889999999999999999999999998752 33567889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008249 514 KGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.+|...|++++|...|+++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.48 E-value=0.00036 Score=61.70 Aligned_cols=111 Identities=14% Similarity=-0.080 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 008249 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETR----GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIH 488 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~ 488 (572)
...+...+...... .+...+..+...|.. ..+...+...++...+.| +......+...|.. ..+++
T Consensus 126 ~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 34444444443332 233444444444443 234455555555555543 34444444444443 45677
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 008249 489 LALQLYDEMLRRGITPDIITYTELIKGHCA----RGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 489 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 536 (572)
+|...|++..+.| ++..+..|...|.+ ..+.++|.++|++..+.|
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 7777777777765 44555566666654 336677777777777665
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=4.3e-06 Score=75.94 Aligned_cols=165 Identities=13% Similarity=-0.033 Sum_probs=79.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--CCCccHHHHHHH
Q 008249 195 ITGYCRVNELDKALHLFSTMANN----GIRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG--KATSDVITSTIL 267 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~l 267 (572)
...|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++.+..... .......++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566666777777776666432 1111 1245666666677777777777666655442110 000123344444
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----H-hHHH
Q 008249 268 MDSYFK-NGDKFQALALWNDMFQK----NIQT-DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-----V-ITYN 335 (572)
Q Consensus 268 ~~~~~~-~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~-~~~~ 335 (572)
...|.. .|++++|++.+++..+. +.++ -..++..+...+...|++++|+..|++......... . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444433 36666666666555431 1011 123344455555556666666666655544311110 0 1122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 008249 336 TLLNCLCKQGKLDEASHFYGVLSK 359 (572)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~~~~ 359 (572)
..+..+...|+++.|...++...+
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 223334445555555555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=3.6e-06 Score=64.52 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=53.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 008249 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (572)
Q Consensus 230 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (572)
...+.+.|++++|...|+++++..+ .+...|..+..+|.+.|++++|+..++...+.+ +.++..|..+..++...
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDP----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC----cchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHc
Confidence 3445555666666666666665544 555566666666666666666666666665554 44555566666666666
Q ss_pred CCHHHHHHHHHHHHHC
Q 008249 310 GDISSAFAYFCQMLKR 325 (572)
Q Consensus 310 g~~~~a~~~~~~m~~~ 325 (572)
|++++|+..|++..+.
T Consensus 85 ~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKH 100 (117)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHh
Confidence 6666666666665543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=2.9e-06 Score=69.28 Aligned_cols=93 Identities=17% Similarity=0.093 Sum_probs=54.0
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCh
Q 008249 160 VNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL 239 (572)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 239 (572)
...|.+.|++++|+..|++..+..| .+...|..+..++...|++++|.+.|++.++.. +-+..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 3445566666666666666666554 355556666666666666666666666665542 22445556666666666666
Q ss_pred hHHHHHHHHHHhCCC
Q 008249 240 GDAVKFLGEVLADDD 254 (572)
Q Consensus 240 ~~a~~~~~~~~~~~~ 254 (572)
++|...+++++...+
T Consensus 95 ~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 95 RAALRDYETVVKVKP 109 (159)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCC
Confidence 666666666665443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=5.5e-07 Score=69.54 Aligned_cols=100 Identities=11% Similarity=-0.023 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 008249 440 NALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH---IHLALQLYDEMLRRGITPD-IITYTELIKG 515 (572)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 515 (572)
..++..+...+++++|.+.|++....+.. +..++..+..++.+.++ +++|+.+++++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 45667777778888888888888775432 56777777777776444 4468888888776432222 2366777888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008249 516 HCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 516 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
|.+.|++++|++.|+++.+. .|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 88888888888888888875 46544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=6.1e-06 Score=67.25 Aligned_cols=91 Identities=13% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
...|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|.+.|+++++..+ .+..+|..++.++...
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p----~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK----KYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc----cchHHHHHHHHHHHHc
Confidence 344556666666666666665543 22455555555666666666666666666665544 5555566666666666
Q ss_pred CCHHHHHHHHHHHHhC
Q 008249 275 GDKFQALALWNDMFQK 290 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~ 290 (572)
|++++|.+.+++....
T Consensus 92 g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 92 GKFRAALRDYETVVKV 107 (159)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6666666666665554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=2.6e-06 Score=72.63 Aligned_cols=97 Identities=14% Similarity=-0.008 Sum_probs=46.5
Q ss_pred CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008249 222 NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNV 301 (572)
Q Consensus 222 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 301 (572)
+...+......+.+.|++++|+..|++++...+ .+...|..+..+|.+.|++++|+..|++..+.. +-++.+|..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p----~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~ 77 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 77 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHH
Confidence 334444444445555555555555555544433 444455555555555555555555555544432 223444444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 008249 302 LINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 302 li~~~~~~g~~~~a~~~~~~m~ 323 (572)
+..+|...|++++|+..|++..
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.37 E-value=0.00064 Score=61.66 Aligned_cols=136 Identities=15% Similarity=0.091 Sum_probs=88.1
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
||..--..+..-|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 4555555667777788999999988875543 677788888888898888887765 3567888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
..+.+.....-+ .+...+...++.....++..|-..|.+++...+++....... .+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~----~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER----AHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT----CCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCc----cchHHHHHHHHHHHHhC
Confidence 888877766543 222233344666667788888888999998888888776443 67777888888888764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.34 E-value=2.3e-06 Score=64.98 Aligned_cols=91 Identities=11% Similarity=0.027 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 008249 476 LLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMK 555 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 555 (572)
.+...+.+.|++++|...|++.++.. +-+...|..+..++.+.|++++|+..++++.+.. +.+...|..++..|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 34566778888889988888888753 4467888888888888999999999998888863 335677888888888889
Q ss_pred CHHHHHHHHHHHH
Q 008249 556 ESDKARDIHQKWL 568 (572)
Q Consensus 556 ~~~~A~~~~~~~l 568 (572)
++++|.+.+++++
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999998888875
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.25 E-value=4.6e-06 Score=63.26 Aligned_cols=87 Identities=16% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
...+.+.|++++|+..|++...... -+...|..+..++.+.|++++|+..|+++++..+ .+..++..+...|...
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP----KDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhccccccccccc----ccccchHHHHHHHHHC
Confidence 3344444555555555555444321 1344444444445555555555555555444433 4444444455555555
Q ss_pred CCHHHHHHHHHH
Q 008249 275 GDKFQALALWND 286 (572)
Q Consensus 275 g~~~~A~~~~~~ 286 (572)
|++++|++.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 555555444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=8.6e-06 Score=62.57 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=36.6
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh
Q 008249 160 VNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE---LDKALHLFSTMANNGIRPN-RVTHNILVHALCK 235 (572)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 235 (572)
++.+...+++++|.+.|++....+| .+..++..+..++.+.++ +++|+.+|+++...+..|+ ..++..+..+|.+
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 3334444444444444444444333 233444444444433222 2234444444433221111 1133334444444
Q ss_pred CCChhHHHHHHHHHHhCC
Q 008249 236 KGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~ 253 (572)
.|++++|++.|+++++..
T Consensus 85 ~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred HhhhHHHHHHHHHHHHhC
Confidence 444444444444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.6e-05 Score=61.79 Aligned_cols=104 Identities=9% Similarity=-0.013 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHHH
Q 008249 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPD-------IITYT 510 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~ 510 (572)
.+..+...+...|++++|+..|.+.++.+.. +...|..+..+|.+.|++++|+..++++++.. +.+ ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3455667777888888888888888775432 57777778888888888888888888877531 111 13566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHH
Q 008249 511 ELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFR 545 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 545 (572)
.+...+...+++++|.+.|++.... .++.....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 116 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLK 116 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHH
Confidence 6667777777888888888777664 45655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=5.9e-05 Score=61.84 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHH
Q 008249 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKR 550 (572)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~ 550 (572)
.+|+.+..+|.+.|++++|+..+++.++.. |.+..+|..++.+|...|++++|...|+++.+. .| |......+...
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 356778888999999999999999998863 457788999999999999999999999999886 45 45555555555
Q ss_pred HHhcCCHHHH-HHHHHHHH
Q 008249 551 YRRMKESDKA-RDIHQKWL 568 (572)
Q Consensus 551 ~~~~g~~~~A-~~~~~~~l 568 (572)
..+.+...+. .+.+++|+
T Consensus 140 ~~~~~~~~~~e~~~~~~~f 158 (170)
T d1p5qa1 140 QQRIRRQLAREKKLYANMF 158 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444433322 23344443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.0036 Score=56.55 Aligned_cols=135 Identities=9% Similarity=0.016 Sum_probs=66.0
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008249 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILV 230 (572)
Q Consensus 151 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 230 (572)
||..-...+++.|.+.|.++.|..++..+. -|..++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 444444556666667777777777766542 14456666667777777766665431 455666666
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 008249 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (572)
..+.+.....-+.- ..... . .+......++..|-..|.+++...+++...... ..+...++.++..|++.
T Consensus 77 ~~l~~~~e~~la~i-----~~~~~-~--~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLAQM-----CGLHI-V--VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHHHH-----TTTTT-T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHH-----HHHHh-h--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence 66666554433211 11111 1 333344556666666666666666666655432 44555566666666654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=7.6e-05 Score=61.18 Aligned_cols=63 Identities=10% Similarity=-0.123 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
|+.+..+|.+.|++++|+..++..+... +.++.++..+..++...|++++|...|+++++..|
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 4444445555555555555555555432 11444455555555555555555555555555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=8.3e-05 Score=57.57 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHH
Q 008249 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD-------IVAY 299 (572)
Q Consensus 227 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~ 299 (572)
..+...+.+.|++++|+..|.++++.++ .+..++..+..+|.+.|++++|++.++++++.. +.+ ..+|
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3445555666666666666666666544 555566666666666666666666666655421 111 1234
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 300 NVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
..+...+...+++++|++.|.+...
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4444555555666666666655544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=6.9e-06 Score=80.79 Aligned_cols=226 Identities=11% Similarity=-0.028 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHH
Q 008249 241 DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI-VAYNVLINGFCLNGDISSAFAYF 319 (572)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~ 319 (572)
+|.+.|+++++..+ .....+..+..++...|++++| ++++...+ |+. ..++. ....-...+..+.+.+
T Consensus 4 eA~q~~~qA~~l~p----~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~--e~~Lw~~~y~~~ie~~ 72 (497)
T d1ya0a1 4 QSAQYLRQAEVLKA----DMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV--EQDLWNHAFKNQITTL 72 (497)
T ss_dssp HHHHHHHHHHHHHG----GGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH--HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHcCC----CCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH--HHHHHHHHHHHHHHHH
Confidence 67788888877654 5556667777777777777765 55555432 211 11111 1111111234455566
Q ss_pred HHHHHCCCCCCHhHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008249 320 CQMLKRGFLPDVITYNTLLNCL--CKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV 397 (572)
Q Consensus 320 ~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 397 (572)
+...+....++..-....+..+ ...+.++.+...+....+.. +++...+..+...+.+.|+.++|...+.......
T Consensus 73 r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 150 (497)
T d1ya0a1 73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI- 150 (497)
T ss_dssp HHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH-
T ss_pred HHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 6555443333332222211111 12233444443333332221 2234455566666666667777666665554321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 398 VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLL 477 (572)
Q Consensus 398 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 477 (572)
...++..+...+...|++++|...|++..+..+. +...|+.|...+...|+..+|...|.+..... .|-..++..|
T Consensus 151 --~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL 226 (497)
T d1ya0a1 151 --CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL 226 (497)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 1234555666666677777777777766664332 45667777777777777777777776666542 3455666666
Q ss_pred HHHHHh
Q 008249 478 IGASCN 483 (572)
Q Consensus 478 i~~~~~ 483 (572)
...+.+
T Consensus 227 ~~~~~~ 232 (497)
T d1ya0a1 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.86 E-value=0.00016 Score=59.00 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008249 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
..|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|.+.|+++.+.. +.+......+....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 356667888899999999999999998863 6677889999999999999999999999999863 23455555555554
Q ss_pred HhcCCH-HHHHHHHHHHH
Q 008249 552 RRMKES-DKARDIHQKWL 568 (572)
Q Consensus 552 ~~~g~~-~~A~~~~~~~l 568 (572)
.+.+.. +...++|.+|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 444433 33455555554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.86 E-value=0.00037 Score=55.68 Aligned_cols=63 Identities=17% Similarity=-0.024 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
+|..+..+|.+.|++++|++.++.+++.++ .++.+|..++.++...|++++|+..|++..+..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p----~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccc----hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455566666677777777777777666554 566666677777777777777777776666553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.86 E-value=0.00038 Score=55.64 Aligned_cols=73 Identities=14% Similarity=-0.013 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHHHHHH
Q 008249 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID-HIPFRIL 547 (572)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 547 (572)
.+|+.+..+|.+.|++++|+..+++.++.. +.+..+|..++.++...|++++|...|++..+. .|+ ..+...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l 141 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 467778888999999999999999998864 557789999999999999999999999999986 454 4444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=7.3e-06 Score=80.57 Aligned_cols=115 Identities=12% Similarity=-0.041 Sum_probs=50.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (572)
++...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...|.+..+.. +-+...|+.+.
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg 193 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLA 193 (497)
T ss_dssp -------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence 445555666666666666666666555544321 12345555666666666666666666666541 22345666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 008249 339 NCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI 378 (572)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 378 (572)
..+...|+..+|...|.+..... +|-..++..|...+.+
T Consensus 194 ~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 194 ILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 66666666666666666666542 3455555555555543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=0.00026 Score=58.17 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=74.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
........|++++|.+.|....... +... +......+.+...-..+.. .....+..++..+.+
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~-------~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVE-------DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3455666777777777777776531 1110 0000111111111112211 344566777788888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHhH
Q 008249 274 NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK-----RGFLPDVIT 333 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 333 (572)
.|++++|+..++.+.... +-+...|..++.+|...|+..+|++.|+++.+ .|+.|...+
T Consensus 80 ~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 888888888888887765 56777788888888888888888888877643 477776543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.00017 Score=58.92 Aligned_cols=62 Identities=18% Similarity=-0.099 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.|..+..++.+.|++++|+..++++++..+ .++.+|..+..+|...|++++|++.|++..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p----~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDP----SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhh----hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 444555556666666666666666665544 55556666666666666666666666666554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.75 E-value=0.00024 Score=58.39 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=68.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhC--CCC-CC------------------hhhHHHHHHHHHHcCChhHHHHHHHHH
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQK--GTV-PD------------------VLTHNYLVNELCKIGDLEKADHVIREM 179 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-~~------------------~~~~~~li~~~~~~g~~~~A~~~~~~~ 179 (572)
+..........|++++|.+.|...+.. |.. ++ ...+..+...+.+.|++++|+..++++
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~a 93 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 93 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 344556788899999999999998875 211 01 123455666666777777777777777
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----CCCCCCHhH
Q 008249 180 SEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN-----NGIRPNRVT 225 (572)
Q Consensus 180 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 225 (572)
.+..| -+...|..++.++.+.|+.++|++.|+++.. .|+.|...+
T Consensus 94 l~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 94 TFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 66665 4666777777777777777777777766532 466666543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.74 E-value=0.00026 Score=57.68 Aligned_cols=72 Identities=13% Similarity=-0.033 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNV 301 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 301 (572)
.|..+..+|.+.|++++|+..++.++...+ .+..+|..+..++...|++++|+..|+++.+.. |.+......
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p----~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~ 137 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDS----ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQ 137 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhccc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 344555566666666666666666666554 566666666666666666666666666666553 333333333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.00024 Score=58.04 Aligned_cols=132 Identities=8% Similarity=-0.066 Sum_probs=76.5
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 122 VAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 122 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
......+.+.|+++.|+..|.++++.. ............ ....+ .....|..+..++.+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~-------~~~~~-~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADG-------AKLQP-VALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHH-------GGGHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHH-------HHhCh-hhHHHHHHHHHHHHhh
Confidence 344556778889999988888776420 000000011110 00001 2344566666677777
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008249 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
|++++|+..+++.++.. +.+..+|..+..++...|++++|.+.|+.+++..+ .+..+...+..+..+.....
T Consensus 91 ~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p----~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 91 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP----EDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHH
Confidence 77777777777776653 23556677777777777777777777777777655 55566666655554444333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.65 E-value=5.3e-05 Score=66.85 Aligned_cols=51 Identities=12% Similarity=-0.012 Sum_probs=26.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 413 RCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 464 (572)
+.|++++|...+++..+..+. |...+..+...++..|++++|.+.++...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555555555554332 445555555555555555555555555554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.62 E-value=8.6e-05 Score=58.89 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=50.8
Q ss_pred HcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHH
Q 008249 165 KIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVK 244 (572)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 244 (572)
+.+.+++|+..|+...+..| .+..++..+..++...+++..+.+ ..+.+++|+.
T Consensus 9 r~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHHHH
Confidence 33445555555555555544 344555555544444333332222 1233456777
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhC
Q 008249 245 FLGEVLADDDGKATSDVITSTILMDSYFKNGD-----------KFQALALWNDMFQK 290 (572)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~ 290 (572)
.|+++++..| .+..+|..+..+|...|+ +++|.+.|++..+.
T Consensus 63 ~~~kAl~l~P----~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 63 KFEEALLIDP----KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHCT----TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc----hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 7777777665 666677777777665442 34555555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.55 E-value=7.9e-05 Score=65.69 Aligned_cols=122 Identities=11% Similarity=-0.019 Sum_probs=64.1
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 008249 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDIS 313 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (572)
.+.|++++|+..+++.++..| .+...+..+...++..|++++|.+.|+...+.. +-+...+..+...+...+..+
T Consensus 7 L~~G~l~eAl~~l~~al~~~P----~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASP----KDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccH
Confidence 355777777777777777665 677777777777777777777777777776653 223333333333332222222
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 314 SAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
++..-.......+-+++...+......+.+.|+.++|...+.++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 21111100000011122233333445556667777777776666553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.48 E-value=0.00028 Score=55.83 Aligned_cols=72 Identities=8% Similarity=-0.067 Sum_probs=49.0
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN----------GDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li 303 (572)
-+.+.+++|.+.|+.+++..| .+..++..+..++... +.+++|+..|++..+.+ +.+..+|..+.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P----~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG 82 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNP----LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCC----cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHH
Confidence 344556777777777777665 6677777777766643 34567888888877765 55677777777
Q ss_pred HHHHhCC
Q 008249 304 NGFCLNG 310 (572)
Q Consensus 304 ~~~~~~g 310 (572)
..|...|
T Consensus 83 ~~y~~~g 89 (145)
T d1zu2a1 83 NAYTSFA 89 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 7776544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.46 E-value=0.00097 Score=53.34 Aligned_cols=90 Identities=13% Similarity=0.022 Sum_probs=47.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHC--CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC---
Q 008249 480 ASCNLGHIHLALQLYDEMLRR--GITP---------DIITYTELIKGHCARGNMKEAEEVFAKIQTL-----GLAID--- 540 (572)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~--g~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~p~--- 540 (572)
.+...|++++|+..|++.++. ..+. ....|+.+..+|...|++++|.+.+++..+. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344455666666666655541 1100 1234555666666666666666666665532 11111
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 541 --HIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 541 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
...+..++.+|...|++++|.+.|++.++
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11344556666666666666666666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.0016 Score=46.86 Aligned_cols=75 Identities=15% Similarity=0.004 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHH
Q 008249 471 VFTYNLLIGASCNLGHIHLALQLYDEMLRR-----GITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID-HIP 543 (572)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~ 543 (572)
...+-.+...+.+.|++++|...|++..+. ...++ ..++..+..++.+.|++++|+..++++.+. .|+ ..+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~a 82 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQRA 82 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHHH
Confidence 334446778888999999999999888753 11222 467888999999999999999999999886 454 334
Q ss_pred HHHH
Q 008249 544 FRIL 547 (572)
Q Consensus 544 ~~~l 547 (572)
+..+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.96 E-value=0.0065 Score=48.24 Aligned_cols=92 Identities=13% Similarity=0.009 Sum_probs=44.2
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCC--------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC---
Q 008249 232 ALCKKGLLGDAVKFLGEVLADDDGKAT--------SDVITSTILMDSYFKNGDKFQALALWNDMFQK-----NIQTD--- 295 (572)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~--- 295 (572)
.+...|++++|++.|++.++..+..+. ....+|+.+..+|...|++++|+..+++.... ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 334445555555555555543221100 01345555666666666666666655555431 00111
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 296 --IVAYNVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 296 --~~~~~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
...++.+..+|...|++++|+..|++..
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445555566666666666655544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.0074 Score=43.09 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=52.8
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCC-----CCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKG-----TVP-DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCAT 190 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 190 (572)
+...+-.+...+.+.|+++.|+..|++.++.. ..+ ...+++.+..++.+.|++++|+..++++.+..|. +..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence 34445677888888889999988888876531 111 2356777888888888888888888888776653 4444
Q ss_pred HHHH
Q 008249 191 YNAF 194 (572)
Q Consensus 191 ~~~l 194 (572)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.34 E-value=0.067 Score=40.60 Aligned_cols=110 Identities=19% Similarity=0.047 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 008249 416 DLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLAL 491 (572)
Q Consensus 416 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 491 (572)
++++|..+|++..+.|.. .....|. .....+.++|.+++++..+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 566777777776665532 1222222 223345666666666666554 33344444444433 34566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 008249 492 QLYDEMLRRGITPDIITYTELIKGHCA----RGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 492 ~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 536 (572)
++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 6666666654 33344445444443 345666666666666554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.33 E-value=0.078 Score=40.22 Aligned_cols=110 Identities=11% Similarity=-0.036 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 008249 381 DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR----GGSIFDAF 456 (572)
Q Consensus 381 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 456 (572)
|+++|++.|++..+.|.. .....|. .....+.++|...+++..+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 455666666665555422 2222222 223345556666666555543 23333344444432 23455666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 008249 457 SLKKEMLLDGIFPDVFTYNLLIGASCN----LGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 457 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 501 (572)
++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 6666655543 23333344444433 335556666666655554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.08 Score=39.03 Aligned_cols=66 Identities=8% Similarity=0.012 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 469 PDVFTYNLLIGASCNLG---HIHLALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 469 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
|...+--.+..++.+.. +.++++.++++..+.+ +.+. ..+..|.-+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34444444455555433 3456666666666532 2232 34455666666666666666666666664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.83 E-value=0.46 Score=34.55 Aligned_cols=139 Identities=17% Similarity=0.079 Sum_probs=67.5
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 008249 235 KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISS 314 (572)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (572)
-.|.+++..+++.+.... .+..-||-++--....-+-+...++++.+-.. -|. ...++...
T Consensus 14 ldG~ve~Gveii~k~~~s------s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~ 74 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS------STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKS 74 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHH
T ss_pred HhhhHHhHHHHHHHHccc------CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHH
Confidence 345666666666666552 33444444554445555555555555444321 111 01222222
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008249 315 AFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLE 394 (572)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 394 (572)
....+-.+- .+...+...++.+.+.|+-+.-.++++.+.+. -++++...-.+..+|.+.|...++-+++.+..+
T Consensus 75 vv~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 75 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 222221111 12233344455556666666666666665553 245555556666666666666666666666666
Q ss_pred CCCC
Q 008249 395 KSVV 398 (572)
Q Consensus 395 ~~~~ 398 (572)
+|.+
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 5543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=1.6 Score=40.57 Aligned_cols=202 Identities=7% Similarity=-0.092 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 345 GKLDEASHFYGVLSKTGVAPDQISYKTIIQGL----CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNA 420 (572)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 420 (572)
.+.+.+..++........ .+..-+...-..+ ...+..+.+...+......+. +.....-.+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 355666666665554321 1222222222222 223445666666665555432 223333334444555677766
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 421 FSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 421 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
...+..+.... .....-.--+..++...|+.++|...|...... ++ -|..|... +.|..-. +...
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~-------~~~~ 369 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--RIGEEYE-------LKID 369 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--HTTCCCC-------CCCC
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--HcCCCCC-------CCcC
Confidence 66666554321 112333344456666677777777777766532 33 23222211 1111000 0000
Q ss_pred CCC--CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 501 GIT--PDII----TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 501 g~~--p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..+ +... .-..-+..+...|....|...|..+... .+......+.....+.|.++.|+....+.
T Consensus 370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 000 0000 0112356677889999999999988764 24556667888888999999999876654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.66 E-value=0.51 Score=34.30 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=75.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008249 378 IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFS 457 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 457 (572)
-.|.+++..+++.+..... +..-||-+|--....-+-+....+++.+-+. .| ....++......
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHHH
Confidence 3456666666666655431 3334454444444444555555555544331 11 112333333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008249 458 LKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 537 (572)
Q Consensus 458 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 537 (572)
.+-.+- .+....+..++.+..+|+-+.-.+++..+.+.+ +|++.....+..+|.+-|...++.+++.++-+.|+
T Consensus 78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 332221 133445556666677777777777777766544 66666677777777777777777777777777665
Q ss_pred C
Q 008249 538 A 538 (572)
Q Consensus 538 ~ 538 (572)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.36 E-value=1.3 Score=32.36 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHH
Q 008249 192 NAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
..|.-+|.+.|++++|.+.++.+++
T Consensus 77 Y~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 77 YYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3333444444444444444444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.81 E-value=7.4 Score=35.75 Aligned_cols=170 Identities=11% Similarity=0.019 Sum_probs=87.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 344 QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSI 423 (572)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 423 (572)
.+..+.+...+......+ .+.....-.+......+++..+...+..|.... .......-=+..++...|+.+.|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 344555555555554432 233333333444445667777776666654321 11223333455666677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC-HHH---HHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 424 RDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGI--FPD-VFT---YNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 424 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~p~-~~~---~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
|...... ++ |-..+.+- +.|..-. +....+ .+. ... -..-+..+...|....|.+.|..+
T Consensus 342 ~~~~a~~---~~---fYG~LAa~-~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l 407 (450)
T d1qsaa1 342 LHQLMQQ---RG---FYPMVAAQ-RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (450)
T ss_dssp HHHHHTS---CS---HHHHHHHH-HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcC---CC---hHHHHHHH-HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHH
Confidence 7766542 23 22222211 1111000 000000 000 000 012345566788888888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 498 LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 498 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
.+. .+......+.....+.|.++.|+....+..
T Consensus 408 ~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 408 VKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 653 245556677777788888888887766653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.23 E-value=2.7 Score=28.75 Aligned_cols=46 Identities=4% Similarity=0.098 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 489 LALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 489 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
++.+-++.+....+.|++....+.+++|.+-+++..|.++++-...
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555555555555544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.41 E-value=5.1 Score=27.39 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (572)
+.-++.+-++.+...++.|++....+.+++|-+.+++.-|.++|+..+.. +.++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 45566666666666667777777777777777777777777777666543 222333444443
|