Citrus Sinensis ID: 008258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570--
Protein Sequence
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRCHVHFHNNLSALHVTASSISNSFLHQSNSEKIYFRYHKLGSFGHQLILVSP
Secondary Structure (PSIPRED)
cccccEEccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHcccHHHHHHccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcEEEEEEEEcccccEEEEEEEEccccEEEEEEEcEEEEcccccHHHHcccccccccccccccEEEEEEEccccccccccccccEEEEEEccccEEEEEEEEccccEEEEEEEccccccccccccHHHHHHHHHHHcccccccccEEEEccccccEEEEcccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccEEccccccccccEEEEcccccccccccccccccccccccccccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHcccHHHHHHHHccccHHcccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHcccccEEEEcEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEEEccccccHHHHHHccccccccccccEEEEEEccccHHHHHccccccEEEEEEcccccEEEEEEccccccEEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHcccccEEEEcccHcccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHcHHEEcccccEEEEEccHHHcccEEccccHcHHHHHccccccccccEEEcccccEEEEcccEcccccHHHHEccc
Coil and Loop (DISEMBL)
MRIAAFTRglncfsriktfpypygytqcralsdsktivsneAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKnkafsthpqahfiNNRYALVFRKLDGLAEeiersqppvdlwRKFIyctsvtgpilgsvdhmqpqdfekvvspvsvahFSQYKLNKLLLKQLEKLNFKIctsegteglhNHLLQGReilmghecvsvsatDQCINVIASFLkegkcterniqcniligtdgagstVRKLVGIDLVGEKDLQKLVSVHFLSKdlgdyllnerpgmlffIFNTEAIGVLVAhdlkegefilqvpfyppqqnledfspEICEKLIFKLVgwelsdidvidikpwVMHAEVAEKFLCCYNQIIlagdachrfppaggfgmntgvqdaHNLAWKIASVLKdiapasilntyeterkpiaefNTALSVQNFRAAmevpsalgldptiaNSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSEsllnesnplgssRLAKLRHIFEEGkslqlqfpaedlgfrchvhfhnNLSALHVTASsisnsflhqsnsekIYFRYhklgsfghqlilvsp
Flexible Loop (DISEMBL)
mriaaftrglncfsriKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAfsthpqahfinnRYALVFRKLDGLAEEiersqppvdlWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFlkegkcteRNIQCNIligtdgagstVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSesllnesnplgSSRLAKLRHIFEEGKSLQLQFPAEDLGFRCHVHFHNNLSALHVTASSISNSFLHQSNSEKIYFRYHKLGSFGHQLILVSP
Low Complexity Region (SEG)
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYklnklllkqleklnfkICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQlsesllnesnplgssRLAKLRHIFEEGKSLQLQFPAEDLGFRCHVHFHNNLSALHVTASSISNSFLHQSNSEKIYFRYHKLGSFGHQLILVSP
Disordered region (IsUnstruct)
**IAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQL***************LAKLRHIFEEGKSLQLQFPAEDLGFRCHVHFHNNLSALHVTASSISNSFLHQSNSEKIYFRYHKLGSFGHQLILV**
Disordered Region (DISOPRED)
**********NC*S*****************************VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQL**************RLAKLRHIFEEGKSLQLQFPAEDLGFRCHVHFHNNLSA**********************FRYHKLGSFGHQLILV**
Disordered Region (DISEMBL)
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRCHVHFHNNLSALHVTASSISNSFLHQSNSEKIYFRYHKLGSFGHQLILVSP
Disordered Region (DISPRO)
*RIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDS*TIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRCHVHFHNNLSALHVTASSISNSFLHQSNSEKIYFRYHKLGSFGHQLILVSP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFRCHVHFHNNLSALHVTASSISNSFLHQSNSEKIYFRYHKLGSFGHQLILVSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	572	2.2.26 [Sep-21-2011]
P42534	627	Putative polyketide hydro	yes	no	0.624	0.569	0.303	1e-42
Q05355	555	Putative polyketide hydro	N/A	no	0.601	0.619	0.312	5e-40
P39888	572	Tetracenomycin polyketide	N/A	no	0.631	0.631	0.289	5e-32
Q8KN28	586	2,4-dichlorophenol 6-mono	yes	no	0.625	0.610	0.265	6e-31
P27138	598	2,4-dichlorophenol 6-mono	no	no	0.638	0.610	0.275	6e-30
Q9S158	589	3-(3-hydroxy-phenyl)propi	yes	no	0.559	0.543	0.272	3e-26
P31020	607	Phenol 2-monooxygenase OS	N/A	no	0.597	0.563	0.268	4e-24
Q476N1	618	3-(3-hydroxy-phenyl)propi	no	no	0.559	0.517	0.261	3e-23
Q13QI0	622	3-(3-hydroxy-phenyl)propi	no	no	0.555	0.511	0.259	8e-23
A4T8B6	569	3-(3-hydroxy-phenyl)propi	yes	no	0.657	0.660	0.237	7e-22

>sp|P42534|HYDL_STRCO Putative polyketide hydroxylase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=SCO5321 PE=3 SV=2

 Score =  175 bits (443), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 191/385 (49%), Gaps = 28/385 (7%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           VPVL+VG   VGL  S+ L +LG++ +++E++   S HP+    N R   +FR + G   
Sbjct: 21  VPVLVVGGSLVGLSTSVFLGRLGVRHTLVERHAGTSIHPRGRGNNVRTMEIFR-VAGTEP 79

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSV-DHMQPQDFEKVVSPVSVAHFSQYKLNKLLL 162
           +I R+   +      +   ++ G     +   + P       SP S    SQ  L   LL
Sbjct: 80  DIRRAAATLADNHGILQAPTLAGDAGEWLFKQIDPGGGLARFSPSSWCLCSQNDLEPELL 139

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
                L                   G ++  G E +S  A  + +  I    + G+ T  
Sbjct: 140 THATNL-------------------GGDLRFGTELLSFEADTEGVTAIVKSRETGEHT-- 178

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
            I+ + L+  DG  S VR+ +GI   G  DL   VS+ F S+ L D ++ +R  ++ ++ 
Sbjct: 179 TIRADYLVAADGPRSPVREQLGIGQSGPGDLFHNVSITFRSRRLAD-VVGDRRFIVCYLT 237

Query: 283 NTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDI 341
           +  A G L+  D +E  ++   P++P Q + +EDF+ E C   I + +G    D+++   
Sbjct: 238 DENADGALLPVDNRE-NWVFHAPWHPEQGETVEDFTDERCAAHIRRAIGDPDLDVEITGK 296

Query: 342 KPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA 401
            PW     VA  +     +++LAGD+ H   P G FG NTG+QDAHNLAWK+A+VL+  A
Sbjct: 297 APWHAAQRVARSYRS--GRVLLAGDSAHEMSPTGAFGSNTGIQDAHNLAWKLAAVLEGWA 354

Query: 402 PASILNTYETERKPIAEFNTALSVQ 426
             ++L+TY+TER+P+AE  +A +  
Sbjct: 355 GEALLDTYDTERRPVAEATSARAAH 379

Involved in developmentally regulated synthesis of a compound biosynthetically related to polyketide antibiotics which is essential for spore color in Streptococcus coelicolor.
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: -

>sp|Q05355|HYDL_STRHA Putative polyketide hydroxylase OS=Streptomyces halstedii GN=schC PE=3 SV=1

 Score =  166 bits (420), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 182/378 (48%), Gaps = 34/378 (8%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           VPVL+VG   VGL  S+ L +LG++  ++E++   S HP+    N R   V+R   G+ +
Sbjct: 15  VPVLVVGGSLVGLSTSVFLGRLGVRHMLVERHAGTSVHPRGRGNNVRTMEVYRAA-GVEQ 73

Query: 104 EIERSQPPVDLWRKFIYCTSVTGP----ILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNK 159
            I R+   +      +   S+ G     +L  +D   P       SP S    SQ  L  
Sbjct: 74  GIRRAAATLAGNHGILQTPSLVGDEGEWLLRDID---PGGGLARFSPSSWCLCSQNDLEP 130

Query: 160 LLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKC 219
           +LL    +L                   G EI    E  S       +  +    + G+ 
Sbjct: 131 VLLDHAVEL-------------------GGEIRFSTELQSFEQDPAGVTAVIKSRRSGEH 171

Query: 220 TERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279
           T   ++ + L+  DG  S VR+ +GI   G  DL   VSV F S+ L +++  +R  ++ 
Sbjct: 172 T--TVRADYLVAADGPRSPVREQLGIGQSGPGDLFHNVSVTFRSRRLAEFV-GDRHFIVC 228

Query: 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYP-PQQNLEDFSPEICEKLIFKLVGWELSDIDV 338
           ++ N EA G L+  D +E  ++   P+YP   + LEDF+ E C   I + VG    D+++
Sbjct: 229 YLTNPEADGALLPVDNRE-NWVFHAPWYPRAARPLEDFTDERCADHIRRAVGVPDLDVEI 287

Query: 339 IDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398
               PW     VA ++     ++ LAGD+ H   P G FG NTG+QDAHNLAWK+A+VL 
Sbjct: 288 TGKAPWHAAQRVARQYRA--GRVFLAGDSAHEMSPTGAFGSNTGIQDAHNLAWKLAAVLG 345

Query: 399 DIAPASILNTYETERKPI 416
             A   +L+TY+ ER+P+
Sbjct: 346 GWAGDGLLDTYDAERRPV 363

Involved in developmentally regulated synthesis of a compound biosynthetically related to polyketide antibiotics which is essential for spore color in Streptomyces halstedii.

Streptomyces halstedii (taxid: 1944)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|P39888|TCMG_STRGA Tetracenomycin polyketide synthesis hydroxylase TcmG OS=Streptomyces glaucescens GN=tcmG PE=3 SV=1

 Score =  139 bits (351), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 178/394 (45%), Gaps = 33/394 (8%)

Query: 37  IVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFR 96
           I+S E V PVLIVG G  GL  ++ L++ G+ C ++EK++  +   +A  I++R   + R
Sbjct: 11  ILSTEEV-PVLIVGGGLTGLSAALFLSQHGVSCRLVEKHRGTTVLTRASGISSRTMELLR 69

Query: 97  KLDGLAEEIERSQPPVD--LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVS----PVSVA 150
            +      IER    V+   WR+          ++   + +   D E  V+     + V 
Sbjct: 70  GVGLERTVIERGPKLVEGARWRELGQPADQIPWVVIRANGLH--DLENAVTVEEPSLDVG 127

Query: 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVI 210
           H S  +       +LE +        G     N  ++             + T     V 
Sbjct: 128 HLSPTRPYWCGQDRLEPILRDEAVRRGARIDFNTRME-------------AFTADESGVT 174

Query: 211 ASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL 270
           A+ + +    +  ++   LI  DG  S VR+ +GI   G   +   +SV F   DL D +
Sbjct: 175 ATIVDQATGEQSTVRARYLIAADGVRSPVRETLGITRTGHGTIGNAMSVLF-KADLRDTV 233

Query: 271 LNERPGMLFFIFNTEAIGVL-------VAHDLKEGEFILQVPFYPPQQNLEDFSPEICEK 323
              R  ++ ++ N +  GVL       V     E  +I    F P + + E F+ E C +
Sbjct: 234 KGRR-FVICYLPNPDEPGVLQLPEVPAVLQLFDEDRWIFGFFFDPRETSPEQFTDERCAQ 292

Query: 324 LIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGV 383
           +I    G     ++V   +PW M    A  +     ++ LAGDA H  PPAG FG N G+
Sbjct: 293 IIRTATGLPGLPVEVQMARPWEMSHNSARSYRS--GRVFLAGDAAHVHPPAGAFGANGGI 350

Query: 384 QDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417
           QDAHNLAWK+A+VLK  A  ++L+TYE ER PI 
Sbjct: 351 QDAHNLAWKLAAVLKGTAGDALLDTYEQERLPIG 384

Hydroxylates tetracenomycin A2 at positions C-4, C-4A, and C12A to give tetracenomycin C (TCM C). Hydroxylates as well 9-carboxymethyl-TCM B3 to yield 8-demethyl-TMC C, a side reaction.

Streptomyces glaucescens (taxid: 1907)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q8KN28|TFDB_DELAC 2,4-dichlorophenol 6-monooxygenase OS=Delftia acidovorans GN=tfdB PE=1 SV=3

 Score =  135 bits (341), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 175/396 (44%), Gaps = 38/396 (9%)

Query: 31  LSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNR 90
           +++  T++  +    VL+VG+GP G   ++LL   G+K   + K    S  P++H  N R
Sbjct: 1   MNEKATVIETD----VLVVGSGPAGAASTLLLATYGVKTLCVSKYATTSRTPRSHITNQR 56

Query: 91  YALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV----DHMQPQDFEKVVSP 146
              V R L GL  E E    P +L  + +YCTS+ G  LG V     H Q +   ++ SP
Sbjct: 57  TMEVMRDL-GLELECEAMASPAELMGENVYCTSLVGDELGRVLTWGTHPQRRADYELASP 115

Query: 147 VSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC 206
             +    Q  L  +++    +                   +G ++    E VS+   +  
Sbjct: 116 THMCDLPQNLLEPIMINHAAR-------------------RGADVRFHTEFVSLKQDE-- 154

Query: 207 INVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDL 266
             V A+        + +I+   LIG DGA S V   VG+ + G+  +   ++V F   DL
Sbjct: 155 TGVTATVRDHLLDRQYDIRAKYLIGADGANSQVVDQVGLPMEGKMGVSGSINVVF-EADL 213

Query: 267 GDYLLNERPGMLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE 322
             Y+   RP +L+++     +   +G+ V   ++     L +  Y       D +     
Sbjct: 214 TKYV-GHRPSVLYWVIQPGSSVGGLGIGVIRMVRPWNKWLCIWGYDIAGGPPDLNEAHAR 272

Query: 323 KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG 382
           +++  L+G     + +     W ++   A +     N++   GDA HR PP  G G NT 
Sbjct: 273 QIVHSLLGDSTIPVKIESTSTWTVNDMYATRLFD--NRVFCMGDAVHRHPPTNGLGSNTS 330

Query: 383 VQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           +QDA NL WK++ VL+  A   +L TY  ER P+A 
Sbjct: 331 IQDAFNLCWKLSHVLQGKAGPELLATYNEERAPVAR 366

Transforms 2,4-dichlorophenol (2,4-DCP) into 3,5-dichlorocatechol.

Delftia acidovorans (taxid: 80866)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 0

>sp|P27138|TFDB_CUPPJ 2,4-dichlorophenol 6-monooxygenase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=tfdB PE=3 SV=1

 Score =  132 bits (333), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 181/407 (44%), Gaps = 42/407 (10%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VL+VG GP G     LL + G++  ++ K    +  P+AH  N R   + R L GL  E 
Sbjct: 9   VLVVGTGPAGASAGALLARYGVRTMLINKYNWTAPTPRAHITNQRTMEILRDL-GLEAEA 67

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSV-----DHMQPQDFEKVVSPVSVAHFSQYKLNKL 160
                P DL  +   C S+ G   G +     D  +  D+++  SP S+    Q  L  +
Sbjct: 68  RLYAAPNDLMGENTICASLAGEEFGRIRTWGTDVRRRADYDEC-SPTSMCDLPQNYLEPI 126

Query: 161 LLKQ--LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG- 217
           L+K   L+    +  T                  +GHE        Q  + ++S L++  
Sbjct: 127 LVKSAALDGCKVRFDTE----------------YLGHE--------QDADGVSSRLRDRL 162

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
              E  ++   LIG DGA S  R +  +DL  E  + K  S++ L +   D  +  RP +
Sbjct: 163 NGEEFTVRSKYLIGADGANS--RVVSDLDLPLEGTMGKSGSINLLFEADLDRYVAHRPSV 220

Query: 278 LFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL 333
           L+++     +   +G+ V   ++     L +  Y  +Q   + S     +++  L+G + 
Sbjct: 221 LYWVIQPGSDIGGLGIGVVRMVRPWNKWLAIWGYDVEQGPPEISESFARRIVHNLIGDDS 280

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393
             + +  I  W ++   A +      ++  AGDA HR PP  G G NT +QD+ NLAWKI
Sbjct: 281 VPLKIEGISTWTVNDMYATRLQ--QGRVFCAGDAVHRHPPTNGLGSNTSIQDSFNLAWKI 338

Query: 394 ASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
           A VL   A  S+L+TY  ER PIA+     + ++      +  ALGL
Sbjct: 339 AMVLNGTADESLLDTYTIERAPIAKQVVCRANKSLEDFPPIAMALGL 385

Transforms 2,4-dichlorophenol (2,4-DCP) into 3,5-dichlorocatechol.

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 0

>sp|Q9S158|MHPA_COMTE 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Comamonas testosteroni GN=mhpA PE=3 SV=1

 Score =  120 bits (301), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 180/375 (48%), Gaps = 55/375 (14%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI+GAGPVGL L+  L   G++  V EK      +P+A  I++  +L   +  GL++++
Sbjct: 16  VLIIGAGPVGLTLANTLGMAGVRVIVAEKLPRIIDYPRAIGIDDE-SLRTLQAAGLSDQV 74

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
           +    P   W +F    + +G    S+   +P+  E   S  +   F Q +++ +L + L
Sbjct: 75  QAHITP-HHWMRFY---TASGQCFASI---EPRTDEYGWSRRNA--FIQPQVDDILYRGL 125

Query: 166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQ 225
           ++ +                    ++L+GHE  S S  D  I      LK+    ER ++
Sbjct: 126 QRFDQV------------------QVLLGHELHSFSQDDAGITAT---LKDADGVERTLR 164

Query: 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN-----ERPGMLFF 280
              L+ +DG  S VR+++ +   G     + + V   +  LG   ++     +RP     
Sbjct: 165 AKYLVASDGGNSLVRRMLNVAFEGRTKPNQWIVVDVRNDPLGTPHIDMHCDPQRP----- 219

Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVI 339
                 +   + H ++  EF++      P +  E  S PE   +L+ K+V  +   +D I
Sbjct: 220 -----YVSAALPHGIRRFEFMVM-----PGETEEQLSRPENLAQLMRKVVA-DPDKVDYI 268

Query: 340 DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
             + +  +A +A +F    ++I+LAGDA H  P   G G N+G++DA NLAWK+A V+K 
Sbjct: 269 RKRVYTHNARLAAQFRV--DRILLAGDAAHIMPVWQGQGYNSGMRDASNLAWKLAMVVKG 326

Query: 400 IAPASILNTYETERK 414
            A + +L++YE ER+
Sbjct: 327 EARSDLLDSYEQERR 341

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Comamonas testosteroni (taxid: 285)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

>sp|P31020|PHEA_PSEUE Phenol 2-monooxygenase OS=Pseudomonas sp. (strain EST1001) GN=pheA PE=3 SV=1

 Score =  113 bits (283), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 173/402 (43%), Gaps = 60/402 (14%)

Query: 34  SKTIVSNEAVV---PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNR 90
           S T   NE  V    VLIVG+GP G   ++ L+  GI   ++ K +  +  P+AH  N R
Sbjct: 23  SATDTPNETNVVETEVLIVGSGPAGSSAAMFLSTQGISNIMITKYRWTANTPRAHITNQR 82

Query: 91  YALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTG------PILGSVDHMQPQDFEKVV 144
              + R   G+ +++     P +L    +YC S+ G      P  G+    +  D+E + 
Sbjct: 83  TMEILRDA-GIEDQVLAEAVPHELMGDTVYCESMAGEEIGRRPTWGTRPDRR-ADYE-LA 139

Query: 145 SPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD 204
           SP       Q  L  ++LK                   N  ++G +     E +S +  D
Sbjct: 140 SPAMPCDIPQTLLEPIMLK-------------------NATMRGTQTQFSTEYLSHTQDD 180

Query: 205 QCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK 264
           + ++V    L      E  I+   LIG DGA    R  V  D+ G  ++     +     
Sbjct: 181 KGVSV--QVLNRLTGQEYTIRAKYLIGADGA----RSKVAADIGGSMNITFKADLSHWRP 234

Query: 265 DLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPF----YPPQQNLEDFSPEI 320
              D +L   P  + + +       +V       E+++   F     PP+ N ++     
Sbjct: 235 SALDPVLG-LPPRIEYRWPRRWFDRMVR---PWNEWLVVWGFDINQEPPKLNDDE----- 285

Query: 321 CEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKF----LCCYNQIILAGDACHRFPPAGG 376
             +++  LVG E  D++++    W  + + A       +CC      AGDA H+ PP+ G
Sbjct: 286 AIQIVRNLVGIEDLDVEILGYSLWGNNDQYATHLQKGRVCC------AGDAIHKHPPSHG 339

Query: 377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
            G NT +QD++NL WK+A VLK  A   +L TY TER PIA+
Sbjct: 340 LGSNTSIQDSYNLCWKLACVLKGQAGPELLETYSTERAPIAK 381

Pseudomonas sp. (strain EST1001) (taxid: 69012)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 7

>sp|Q476N1|MHPA_CUPPJ 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=mhpA PE=3 SV=1

 Score =  110 bits (275), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 174/375 (46%), Gaps = 55/375 (14%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           V I+GAGPVGL+++ +L   G++ +V+EK      +P+A  +++    VF+ + GLA+ +
Sbjct: 21  VAIIGAGPVGLMIANILGLQGVRVTVVEKLDQLIDYPRAIGLDDEALRVFQAI-GLADTL 79

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
                P D W +F+   +  G    S+   +P+  E          F   + N  +    
Sbjct: 80  LPHTTP-DHWMRFV---TKDGHCFASI---EPRTDE----------FGWSRRNAFIQPLA 122

Query: 166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQ 225
           +++ F        EGL     +  ++L GH    V A  Q  + ++  +       R I+
Sbjct: 123 DRVLF--------EGLQR--FEHVQVLFGH---GVEAFTQDGHGVSVEVTTSAGRRRTIR 169

Query: 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD-----YLLNERPGMLFF 280
              ++G DG  S VR+ + +   G     + + V   +  +G      +  +ERP     
Sbjct: 170 AAYMVGADGGNSIVRRALQVPFEGRTKPNQWIVVDVRNDPVGSPHIYMHCDHERP----- 224

Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVI 339
                 +   + H ++  EF++      P +  E+ S PE    LI K+V  +   +D I
Sbjct: 225 -----YVSAALPHGIRRFEFMVM-----PGETEEELSKPENMAALIRKVVA-DPDKVDYI 273

Query: 340 DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
             + +  +A +A  F    ++++LAGDA H  P   G G N+G++DA+NL WK+A V K 
Sbjct: 274 RKRVYTHNARLASTFRV--DRVLLAGDAAHIMPVWQGQGYNSGIRDANNLGWKLAMVAKG 331

Query: 400 IAPASILNTYETERK 414
           +A   +L+TY  ER+
Sbjct: 332 LADGRLLDTYTAERR 346

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

>sp|Q13QI0|MHPA_BURXL 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Burkholderia xenovorans (strain LB400) GN=mhpA PE=3 SV=1

 Score =  108 bits (271), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 176/377 (46%), Gaps = 59/377 (15%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           V I+GAGPVGL+++  L   G++  VLEK +    +P+A  +++    VF+ + GLA+ +
Sbjct: 21  VAIIGAGPVGLMIANYLGLQGVRVVVLEKLEQIIDYPRAIGLDDEALRVFQSV-GLADVL 79

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
                P D W +F+   + TG    S+   +P+  E          F   + N  +    
Sbjct: 80  LPHTTP-DHWMRFV---THTGHCFASI---EPRTDE----------FGWSRRNAFIQPLA 122

Query: 166 EKLNFKICTSEGTEGLHN--HLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN 223
           +++ +        EGL    H+    ++L G      +     + + A   K G+   R 
Sbjct: 123 DRVLY--------EGLRRFPHV----QVLFGTSVSGFTQDPAGVTIEADDEKGGR---RT 167

Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD-----YLLNERPGML 278
           ++ + ++G DG  S VR+L+ +   G     + + V   +  +G      +   +RP   
Sbjct: 168 VRASYMVGADGGNSFVRRLLDVPFEGRTKPNQWIVVDVRNDPIGSPHIYMHCDPQRP--- 224

Query: 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDID 337
                   +   + H ++  EF++      P +  E+ S PE    LI K+V  +   +D
Sbjct: 225 -------YVSAALPHGIRRFEFMVM-----PGETEEELSKPENMAALIRKVVA-DPQKVD 271

Query: 338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
            I  + +  +A +A  F    ++++LAGDA H  P   G G N+G++DA NL WK+A V+
Sbjct: 272 YIRKRVYTHNARLASTFRV--DRVLLAGDAAHIMPVWQGQGYNSGIRDASNLGWKLAMVV 329

Query: 398 KDIAPASILNTYETERK 414
           K +A  ++L+TY  ER+
Sbjct: 330 KQLAGDALLDTYTAERR 346

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Burkholderia xenovorans (strain LB400) (taxid: 266265)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

>sp|A4T8B6|MHPA_MYCGI 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase OS=Mycobacterium gilvum (strain PYR-GCK) GN=mhpA PE=3 SV=1

 Score =  105 bits (263), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 195/443 (44%), Gaps = 67/443 (15%)

Query: 38  VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRK 97
           ++ +  V V+IVGAGP GL L+ +L   G++  V+++      +P+   +++     F+ 
Sbjct: 1   MTEQTDVDVVIVGAGPAGLTLANILGLEGVRVLVVDERDKLIDYPRGVGLDDESLRTFQA 60

Query: 98  LDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKL 157
           + GL + +     P  + R F    ++       +  M P D          A F   K 
Sbjct: 61  I-GLVDRVLPHTVPNQILRFFDAKRNL-------LAEMAPPD----------ARFGWPKR 102

Query: 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG 217
           N  +   ++   F         GL        E+  GH         QC         E 
Sbjct: 103 NGFVQPMVDAELFG--------GLQR--FDNVEVRFGHRM------HQCTQTTDRVEVEF 146

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLG--DYLLNERP 275
              + ++    ++G DG  S  R+L+G+   G     + + V   +  LG  +  +   P
Sbjct: 147 DGGQASVSARYVVGCDGGRSVTRRLMGVSFDGTTSSTRWLVVDIANDPLGHPNSEVGADP 206

Query: 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
              +       + + +AH ++  EF++    +P + + E   P    +++ +L+ +    
Sbjct: 207 RRPY-------VSIAIAHGIRRFEFMI----HPDETDEEADDPAFVRRMLGQLIPYP-ER 254

Query: 336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
           +D+I  + +  H+ +A  F     +++LAGDA H  P   G G N+G++DA NL WK+A+
Sbjct: 255 VDMIRHRVYTHHSRIAGSFR--EGRLMLAGDAAHLMPVWQGQGYNSGIRDAANLGWKLAA 312

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALG--LDPTIANSVHQLIN 453
           V+   A   +L+TY+ ER+           ++ RA +++ + +G  + PT    V  L +
Sbjct: 313 VVTGRAGEELLDTYDVERR-----------KHARAMIDLSTMVGRVISPT-NRKVAALRD 360

Query: 454 RV--AGSVLPSVLQKALLEGIFK 474
           RV  A S +PS L++ +LE  FK
Sbjct: 361 RVIHAASAVPS-LKRYVLEMRFK 382

Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).

Mycobacterium gilvum (strain PYR-GCK) (taxid: 350054)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	572
225425869	708	PREDICTED: 2,4-dichlorophenol 6-monooxyg	0.867	0.700	0.764	0.0
224100055	707	predicted protein [Populus trichocarpa]	0.898	0.727	0.760	0.0
449449080	709	PREDICTED: putative polyketide hydroxyla	0.870	0.702	0.721	0.0
356538099	714	PREDICTED: putative polyketide hydroxyla	0.893	0.715	0.710	0.0
79351534	709	FAD/NAD(P)-binding oxidoreductase family	0.884	0.713	0.697	0.0
297808795	709	predicted protein [Arabidopsis lyrata su	0.905	0.730	0.679	0.0
255547866	685	conserved hypothetical protein [Ricinus	0.856	0.715	0.721	0.0
297851148	709	EMB2421 [Arabidopsis lyrata subsp. lyrat	0.884	0.713	0.683	0.0
357463063	983	CCP [Medicago truncatula] gi|355490861|g	0.881	0.512	0.646	0.0
357126361	712	PREDICTED: putative polyketide hydroxyla	0.835	0.671	0.659	0.0

>gi|225425869|ref|XP_002266262.1| PREDICTED: 2,4-dichlorophenol 6-monooxygenase [Vitis vinifera] gi|297738359|emb|CBI27560.3| unnamed protein product [Vitis vinifera]

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/500 (76%), Positives = 439/500 (87%), Gaps = 4/500 (0%)

Query: 22  PYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
           PY YTQ R  S+    VS   V PVLIVGAGPVGL LSILLTKLG+KC+VLEK+K FS H
Sbjct: 14  PYQYTQKRGFSE----VSRNGVFPVLIVGAGPVGLALSILLTKLGVKCAVLEKSKTFSKH 69

Query: 82  PQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFE 141
           PQAHFINNR   VFRKLDGLA+EI++SQPPVDLWRKFIYCTS+ G +LGSVDHMQP+DF+
Sbjct: 70  PQAHFINNRSMEVFRKLDGLADEIQKSQPPVDLWRKFIYCTSLYGSVLGSVDHMQPEDFK 129

Query: 142 KVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201
           +VVSP+SVAHFSQYKL  LLLKQLE L+F++   EG EGL++  ++ ++ILMGHECVS+ 
Sbjct: 130 QVVSPISVAHFSQYKLTALLLKQLENLSFRVHNWEGWEGLNHGHVREKQILMGHECVSMD 189

Query: 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF 261
           ATD  INV ASFLKEGKC +RNIQC+IL+G DGAGSTVRKL GI + GE+DLQKLVS+HF
Sbjct: 190 ATDDWINVTASFLKEGKCMKRNIQCSILVGADGAGSTVRKLAGITMKGEEDLQKLVSIHF 249

Query: 262 LSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC 321
           LSK+LG YLLNERPGMLFFIFNTEAIGVLVAHDLK+GEF+LQ PFYPPQQ+L DFSPE+C
Sbjct: 250 LSKELGQYLLNERPGMLFFIFNTEAIGVLVAHDLKQGEFVLQTPFYPPQQSLHDFSPEVC 309

Query: 322 EKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNT 381
           EKLIFKLVG EL DIDVIDIKPWVMHAEVAEKF+ C N+I+LAGDA HRFPPAGGFGMNT
Sbjct: 310 EKLIFKLVGQELVDIDVIDIKPWVMHAEVAEKFVSCDNRILLAGDAAHRFPPAGGFGMNT 369

Query: 382 GVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLD 441
           G+QDAHNLAWK+AS++K IAP+SIL+TY+TER+PIA FNT LS+QNFRAAM VP+ LGL+
Sbjct: 370 GIQDAHNLAWKLASLVKGIAPSSILHTYDTERRPIAIFNTELSIQNFRAAMAVPATLGLN 429

Query: 442 PTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRH 501
           PT+ANSVHQ+I    GS+LPS LQ+A+L+GIF +GRAQ+SESLLNE NP+GS RLAKLR 
Sbjct: 430 PTVANSVHQVITNGIGSILPSGLQRAVLDGIFTIGRAQVSESLLNEKNPIGSFRLAKLRR 489

Query: 502 IFEEGKSLQLQFPAEDLGFR 521
           IFEEGKSLQLQFPAEDLGFR
Sbjct: 490 IFEEGKSLQLQFPAEDLGFR 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100055|ref|XP_002311726.1| predicted protein [Populus trichocarpa] gi|222851546|gb|EEE89093.1| predicted protein [Populus trichocarpa]

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/523 (76%), Positives = 447/523 (85%), Gaps = 9/523 (1%)

Query: 3   IAAFTRGLNCFSRIKTFP----YPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVL 58
           I  F+       RI+  P    Y Y + QCR  S  K    +++V+PVLIVGAGPVGLVL
Sbjct: 7   IKGFSSVYRAKPRIRVHPSFCQYGYCHIQCRTFSHFKD--HDDSVLPVLIVGAGPVGLVL 64

Query: 59  SILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118
           SILLTKLG+KCSVLEK+K+FS HPQAHFINNR   VFRKLDGLAEEI+RSQPPVDLWRKF
Sbjct: 65  SILLTKLGVKCSVLEKSKSFSHHPQAHFINNRSMEVFRKLDGLAEEIQRSQPPVDLWRKF 124

Query: 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT 178
           +YCTS+TGP+LGSVDHMQPQDFEKVVSPVSVAHFSQYKL +LLLK+LE LNF IC  EG 
Sbjct: 125 VYCTSLTGPVLGSVDHMQPQDFEKVVSPVSVAHFSQYKLIRLLLKKLEDLNFHICKPEG- 183

Query: 179 EGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238
             L++   +G E+LMGHECV ++AT Q +NV AS LKEGK TERNI CNIL+GTDGAGST
Sbjct: 184 --LNDEPFRGGELLMGHECVKINATGQSVNVTASHLKEGKYTERNISCNILVGTDGAGST 241

Query: 239 VRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEG 298
            RKL GI+L GEKDLQKLVSVHFLS+DLG YLLNERPGMLFFIFNTEAIGVLVAHDL +G
Sbjct: 242 TRKLAGIELRGEKDLQKLVSVHFLSRDLGQYLLNERPGMLFFIFNTEAIGVLVAHDLMQG 301

Query: 299 EFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358
           EF+LQ+PFYPPQQ+L+DFSPE C+ LI KLVG ELSDIDVIDIKPWVMHAEVAEKF+ C 
Sbjct: 302 EFVLQMPFYPPQQSLDDFSPETCKHLILKLVGQELSDIDVIDIKPWVMHAEVAEKFVSCD 361

Query: 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           N+IILAGDA HRFPPAGGFGMNTG+QDAHNLAWKIA+++K IAP+SIL+TYETER+PIA 
Sbjct: 362 NRIILAGDAAHRFPPAGGFGMNTGIQDAHNLAWKIAALVKGIAPSSILHTYETERRPIAI 421

Query: 419 FNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRA 478
           FNTALSVQNFRAAM VP+ LGLDPT+ANSVHQ I    GS+LPS LQ+A+L+GIF +GRA
Sbjct: 422 FNTALSVQNFRAAMAVPATLGLDPTVANSVHQTITDGVGSILPSGLQRAILDGIFTIGRA 481

Query: 479 QLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFR 521
           QLSE LLNE N LGSSRLAKLR +FEEGKSLQLQFPAEDLGFR
Sbjct: 482 QLSEFLLNEKNLLGSSRLAKLRRLFEEGKSLQLQFPAEDLGFR 524

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449080|ref|XP_004142293.1| PREDICTED: putative polyketide hydroxylase-like [Cucumis sativus] gi|449513114|ref|XP_004164234.1| PREDICTED: putative polyketide hydroxylase-like [Cucumis sativus]

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/502 (72%), Positives = 432/502 (86%), Gaps = 4/502 (0%)

Query: 22  PYGYTQCRALSDSKTI-VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80
           P    QCR  S+SK     +E +VPVLIVGAGPVGLVL+ILLTKLG+KC+++EKNK+FS 
Sbjct: 32  PLRNIQCRGSSNSKIFHGGDETMVPVLIVGAGPVGLVLAILLTKLGVKCAIVEKNKSFSK 91

Query: 81  HPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF 140
           HPQAHFINNR   VFRKLDGLAE+I+  QPPV+ WRKFIYCTS+ G ILGSVDHMQPQDF
Sbjct: 92  HPQAHFINNRTMEVFRKLDGLAEKIQLYQPPVESWRKFIYCTSLNGTILGSVDHMQPQDF 151

Query: 141 EKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200
           E ++SPVSVAHFSQYKLN LLLKQL+ L F++C+ +  EG    +++ ++IL+GHECVS+
Sbjct: 152 EHIISPVSVAHFSQYKLNGLLLKQLQNLGFQVCSPDSLEG--PCVVREKKILLGHECVSI 209

Query: 201 SATDQCINVIASFLKEGKCTER-NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV 259
            ATD+ +N+ AS+LKEGK  ER NI CNIL+G DGAGSTVR+LVGI++ GE DLQKLVS+
Sbjct: 210 DATDESVNMTASYLKEGKHVERRNISCNILVGADGAGSTVRRLVGIEMKGENDLQKLVSI 269

Query: 260 HFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE 319
           HF S++LG+YLL +RPGML+FIFNTEAIGVLVAHDLK+GEFILQVPFYPPQQN+EDF P+
Sbjct: 270 HFFSRELGEYLLKDRPGMLYFIFNTEAIGVLVAHDLKQGEFILQVPFYPPQQNIEDFFPQ 329

Query: 320 ICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGM 379
           +CE+LIFKLVG  L DIDV D+KPW+MHAEVAEKF+C  N ++LAGDA HRFPPAGGFGM
Sbjct: 330 MCEELIFKLVGRNLCDIDVRDVKPWIMHAEVAEKFICRQNHVLLAGDAAHRFPPAGGFGM 389

Query: 380 NTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALG 439
           NTG+QD HNLAWK+A+VL+DIA  SILNTYE ER+PIA FNTALSV+NF+AAMEVP+ALG
Sbjct: 390 NTGIQDVHNLAWKLAAVLQDIASPSILNTYEMERRPIALFNTALSVKNFKAAMEVPAALG 449

Query: 440 LDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKL 499
           LDP IANSVH+++N   GS+L S LQ A+L+GIFK+GR QLS++ LN  NP+GSSRLAKL
Sbjct: 450 LDPKIANSVHRVVNHGLGSILSSSLQSAVLDGIFKIGRLQLSDTFLNVENPIGSSRLAKL 509

Query: 500 RHIFEEGKSLQLQFPAEDLGFR 521
           RHIF+EGKSLQLQFPAEDLGFR
Sbjct: 510 RHIFDEGKSLQLQFPAEDLGFR 531

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538099|ref|XP_003537542.1| PREDICTED: putative polyketide hydroxylase-like [Glycine max]

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/522 (71%), Positives = 425/522 (81%), Gaps = 11/522 (2%)

Query: 9   GLNCFSRIKTFP---------YPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLS 59
           G   F R  +FP         Y   + Q R  S    +  N+ V PVLI+GAGPVGLVLS
Sbjct: 2   GFLRFIRRYSFPFKDKTRNRAYALQHMQSRGFSKDGVLNGNDVVHPVLIIGAGPVGLVLS 61

Query: 60  ILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119
           ILLTKLGI C+VLE+NKAFS HPQAHFINNR   +FRK+DGL EEI+RSQPPVDLWRKFI
Sbjct: 62  ILLTKLGINCTVLERNKAFSKHPQAHFINNRSMEIFRKIDGLVEEIQRSQPPVDLWRKFI 121

Query: 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTE 179
           YCTS++G ILGSVDH+QPQD E  VSPVSVAHFSQYKL  LLLK+LE L F+IC  E  E
Sbjct: 122 YCTSLSGSILGSVDHIQPQDLEHFVSPVSVAHFSQYKLTMLLLKRLENLGFQICAPESLE 181

Query: 180 GLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239
           G  N     ++I+MGHECVS+ A++  + V AS + +GK  E+NI CNILIGTDGAGSTV
Sbjct: 182 G--NEQSCEKKIMMGHECVSIDASNDFVTVTASSIIKGKRVEQNIHCNILIGTDGAGSTV 239

Query: 240 RKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGE 299
           RKLVGI++ GEKDLQKLVSVHF SKDLG +LL E PGMLFFIFN EAIGVLVAHDL++GE
Sbjct: 240 RKLVGIEMRGEKDLQKLVSVHFFSKDLGQFLLKENPGMLFFIFNAEAIGVLVAHDLRQGE 299

Query: 300 FILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYN 359
           F+LQ+PFYPPQQ +EDF+P+ CEKLI KLVG E  D+DVIDIKPWVMHAEVAE+F+C  N
Sbjct: 300 FVLQIPFYPPQQTIEDFNPKACEKLISKLVGREFGDVDVIDIKPWVMHAEVAERFICSGN 359

Query: 360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEF 419
           +I+LAGDA HRFPPAGGFGMNTG+QDAHNLAWKIASV+K IAP S+LNTYE ERKPIA F
Sbjct: 360 RILLAGDAAHRFPPAGGFGMNTGIQDAHNLAWKIASVIKGIAPTSMLNTYEIERKPIALF 419

Query: 420 NTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQ 479
           NT LS++N++AAM VP+ALGLDPT+AN VHQ I    GS+LPS LQK  L+GIF +GRAQ
Sbjct: 420 NTRLSLENYKAAMSVPAALGLDPTVANIVHQFIVDGIGSILPSGLQKVALDGIFGIGRAQ 479

Query: 480 LSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFR 521
           +SE +LNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFR
Sbjct: 480 VSEFVLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFR 521

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79351534|ref|NP_173844.2| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana] gi|26450238|dbj|BAC42236.1| unknown protein [Arabidopsis thaliana] gi|332192397|gb|AEE30518.1| FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/509 (69%), Positives = 425/509 (83%), Gaps = 3/509 (0%)

Query: 14  SRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGIKCSVL 72
           SR++   YP  Y Q + LS +      +A  +PVLIVGAGPVGLVLSILLTKLG+KC+V+
Sbjct: 18  SRVRV--YPVRYFQRKDLSSTNLFNGEDAAKLPVLIVGAGPVGLVLSILLTKLGVKCAVV 75

Query: 73  EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV 132
           +K  +FS HPQAHFINNR   +FR+LDGLAEEIERSQPPVDLWRKFIYCTS++G  LG+V
Sbjct: 76  DKATSFSKHPQAHFINNRSMEIFRELDGLAEEIERSQPPVDLWRKFIYCTSLSGSTLGTV 135

Query: 133 DHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL 192
           DHMQPQDFEKVVSP SVAHFSQYKL  LLLK+LE L F +  S+ ++GL    +  R+IL
Sbjct: 136 DHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLEDLGFHVRGSKESDGLEADSVVARQIL 195

Query: 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD 252
           MGHECV + A    I    SFLK GK  +RNIQC++L+G DGAGS VRKL  I++ GE+D
Sbjct: 196 MGHECVGIDANKDSITATVSFLKGGKHMKRNIQCSLLVGADGAGSAVRKLTVIEMRGERD 255

Query: 253 LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN 312
           LQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF+LQ+P+YPPQQ+
Sbjct: 256 LQKLVSVHFMSRELGEYLISNRPGMLFFIFNTDGIGVLVAHDLLQGEFVLQIPYYPPQQS 315

Query: 313 LEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFP 372
           L DFSPE+C+ LIF LVG ELSD+DV DIKPWVMHAEVAEKF+CC N++ILAGDA HRFP
Sbjct: 316 LSDFSPEMCKMLIFNLVGHELSDLDVADIKPWVMHAEVAEKFMCCENRVILAGDAAHRFP 375

Query: 373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
           PAGGFGMNTG+QDAHNLAWKIA++++  A +SIL TYETER+PIA  NT+LSVQNFRAAM
Sbjct: 376 PAGGFGMNTGIQDAHNLAWKIAALVQGSANSSILKTYETERRPIALSNTSLSVQNFRAAM 435

Query: 433 EVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLG 492
            VPSALGLDPT+ANSVH+ IN+  GS+LP+ LQKA+L+ +F +GRAQLSESLLNESNPLG
Sbjct: 436 SVPSALGLDPTVANSVHRFINKTVGSILPTGLQKAILDNVFALGRAQLSESLLNESNPLG 495

Query: 493 SSRLAKLRHIFEEGKSLQLQFPAEDLGFR 521
           + RL++L+ IFE GKSLQLQFPAEDLGFR
Sbjct: 496 NQRLSRLKSIFEGGKSLQLQFPAEDLGFR 524

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808795|ref|XP_002872281.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318118|gb|EFH48540.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/521 (67%), Positives = 426/521 (81%), Gaps = 3/521 (0%)

Query: 2   RIAAFTRGLNCFSRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSI 60
           RI   TR     SR++    P  Y Q + LS++ +    +A  +PVLIVGAGPVGLVLSI
Sbjct: 6   RITGVTRISRNNSRVRV--CPVRYFQSKDLSNTNSFNGEDAAKLPVLIVGAGPVGLVLSI 63

Query: 61  LLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120
           LLTKLG+KC+V++K  +FS HPQAHFINNR   +FR LDGLAEEIERSQPPVDLWRKFIY
Sbjct: 64  LLTKLGVKCAVVDKATSFSKHPQAHFINNRSMEIFRALDGLAEEIERSQPPVDLWRKFIY 123

Query: 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEG 180
           CTS++G  LG+VDHMQPQDFEKVVSP SVAHFSQYKL  LLLK+L  L F +  S+ ++G
Sbjct: 124 CTSLSGSTLGTVDHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLGDLGFHVRGSKESDG 183

Query: 181 LHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR 240
           L    +  R+ILMGHECV++ A    I    S+LK GK  +RNIQC+IL+G DGAGS VR
Sbjct: 184 LEVDAVVARQILMGHECVAIDANKDSITATVSYLKGGKHMKRNIQCSILVGADGAGSAVR 243

Query: 241 KLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEF 300
           KL  I++ GE+DLQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF
Sbjct: 244 KLTAIEMRGERDLQKLVSVHFMSRELGEYLISRRPGMLFFIFNTDGIGVLVAHDLLQGEF 303

Query: 301 ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360
           +LQ+P+YPPQQ+L DFSPE+C  LI+ LVG ELSD+DV DIKPWVMHAEVAEKF+CC N+
Sbjct: 304 VLQIPYYPPQQSLSDFSPEMCRMLIYNLVGHELSDLDVADIKPWVMHAEVAEKFMCCENR 363

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFN 420
           +ILAGDA HRFPPAGGFGMNTG+QDAHNL WKIA++++  A +SIL TYETER+PIA  N
Sbjct: 364 VILAGDAAHRFPPAGGFGMNTGIQDAHNLTWKIAALVQGSAKSSILKTYETERRPIALSN 423

Query: 421 TALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQL 480
           T+LSVQNFRAAM VPSALGLDPT+ANSVH+ IN+  GS+LP+ LQKA+L+ +F +GRAQL
Sbjct: 424 TSLSVQNFRAAMSVPSALGLDPTVANSVHRFINKTVGSILPTGLQKAILDNVFALGRAQL 483

Query: 481 SESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFR 521
           SESLLNESNPLG+ RL +++ IFE GKSLQLQFPAEDLGFR
Sbjct: 484 SESLLNESNPLGNQRLRRVKSIFERGKSLQLQFPAEDLGFR 524

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547866|ref|XP_002514990.1| conserved hypothetical protein [Ricinus communis] gi|223546041|gb|EEF47544.1| conserved hypothetical protein [Ricinus communis]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/507 (72%), Positives = 429/507 (84%), Gaps = 17/507 (3%)

Query: 15  RIKTFPYPYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
           R K   Y Y Y+Q R LS S+++ S+++++PVLIVGAGPVGL LSILLTKLG+KCS+LEK
Sbjct: 11  RNKLCSYGY-YSQSRGLSHSQSLNSDDSILPVLIVGAGPVGLTLSILLTKLGVKCSILEK 69

Query: 75  NKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDH 134
           +KAFS HPQAHFINNR   +F KL+GLAEEI+RSQPPV+LWRKFIYCTS+TGPILGSVDH
Sbjct: 70  SKAFSNHPQAHFINNRSMEIFHKLEGLAEEIQRSQPPVELWRKFIYCTSLTGPILGSVDH 129

Query: 135 MQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194
           MQPQDFEKVVSPVSVAHFSQYKL++LLL++LE LNF IC  E   GL +  L+GREILMG
Sbjct: 130 MQPQDFEKVVSPVSVAHFSQYKLSRLLLRKLEDLNFHICRPESVRGLGDGPLKGREILMG 189

Query: 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ 254
           HEC+S++ATD  + V AS + EGK  E++I C+IL+GTDGAGST+RKL GI+L GEKDLQ
Sbjct: 190 HECISMNATDYSVTVTASHIVEGKYMEKDISCSILVGTDGAGSTIRKLAGIELRGEKDLQ 249

Query: 255 KLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLE 314
           KL+S+HF S+DLG YLL ERPGMLFFIFNTEAIGVLVAHDLK+GEFILQ           
Sbjct: 250 KLISIHFFSRDLGHYLLAERPGMLFFIFNTEAIGVLVAHDLKQGEFILQ----------- 298

Query: 315 DFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPA 374
                IC KLI KLVG ELSDIDV ++KPWVMHAEVAEKF+ C +++ILAGDA HRFPPA
Sbjct: 299 -----ICRKLILKLVGQELSDIDVTEVKPWVMHAEVAEKFVSCNSRVILAGDAAHRFPPA 353

Query: 375 GGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEV 434
           GGFGMNTG+QD HNLAWK+AS +  IAP+SI++TYE ER+PIA FNTALSVQNFRAAM V
Sbjct: 354 GGFGMNTGIQDVHNLAWKLASFMMGIAPSSIIHTYEMERRPIALFNTALSVQNFRAAMAV 413

Query: 435 PSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSS 494
           P+ALGLDP++ANSVH+++N   GS+LPS LQ+A+L+GIF +GRAQLSESLLNE NPLGSS
Sbjct: 414 PAALGLDPSVANSVHEVMNDGVGSILPSGLQRAILDGIFMIGRAQLSESLLNERNPLGSS 473

Query: 495 RLAKLRHIFEEGKSLQLQFPAEDLGFR 521
           RL K+R IFEEGKSLQLQFPAEDLGFR
Sbjct: 474 RLDKVRRIFEEGKSLQLQFPAEDLGFR 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851148|ref|XP_002893455.1| EMB2421 [Arabidopsis lyrata subsp. lyrata] gi|297339297|gb|EFH69714.1| EMB2421 [Arabidopsis lyrata subsp. lyrata]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/509 (68%), Positives = 424/509 (83%), Gaps = 3/509 (0%)

Query: 14  SRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGIKCSVL 72
           SR++   YP  + Q + LS + +    +A  +PVLIVGAGPVGLVLSILLTKLG+KC+V+
Sbjct: 18  SRVRV--YPVRHFQSKDLSSTNSFNGQDAAKLPVLIVGAGPVGLVLSILLTKLGVKCAVV 75

Query: 73  EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV 132
           +K  +FS HPQAHFINNR   +FR LDGLAEEIERSQPPVDLWR FIYCTS++G  LG+V
Sbjct: 76  DKATSFSKHPQAHFINNRSMEIFRALDGLAEEIERSQPPVDLWRNFIYCTSLSGSTLGTV 135

Query: 133 DHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL 192
           DHMQPQDFEKVVSP SVAHFSQYKL  LLLK+LE L F +  S+ ++G+    +  R+IL
Sbjct: 136 DHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLEDLGFHVRGSKDSDGIELDSVVARQIL 195

Query: 193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD 252
           MGHECV++ A    I    S+LK GK  +RNIQC++L+G DGAGS VRKL  I++ GEKD
Sbjct: 196 MGHECVAIDANKDSITATVSYLKGGKHMKRNIQCSLLVGADGAGSAVRKLTEIEMRGEKD 255

Query: 253 LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN 312
           LQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF+LQ+P+YPPQQ+
Sbjct: 256 LQKLVSVHFMSRELGEYLISSRPGMLFFIFNTDGIGVLVAHDLLQGEFVLQIPYYPPQQS 315

Query: 313 LEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFP 372
           L DFS E+C+ LIF LVG +LSD+DV DIKPWVMHAEVAEKF+C  N++ILAGDA HRFP
Sbjct: 316 LSDFSLEMCKMLIFNLVGHQLSDLDVADIKPWVMHAEVAEKFMCFENRVILAGDAAHRFP 375

Query: 373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
           PAGGFGMNTG+QDAHNLAWKIA++++  A +SILNTYETER+PIA  NT+LSVQNF+AAM
Sbjct: 376 PAGGFGMNTGIQDAHNLAWKIAALVQGSAKSSILNTYETERRPIALSNTSLSVQNFKAAM 435

Query: 433 EVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLG 492
            VPSALGLDPT+ANSVH+ IN+  GS+LP+ LQKA+L+ +F +GRAQLSES+LNESNPLG
Sbjct: 436 SVPSALGLDPTVANSVHRFINKTVGSILPTGLQKAILDNVFALGRAQLSESILNESNPLG 495

Query: 493 SSRLAKLRHIFEEGKSLQLQFPAEDLGFR 521
           + RL++L+ IFE GKSLQLQFPAEDLGFR
Sbjct: 496 NQRLSRLKSIFEGGKSLQLQFPAEDLGFR 524

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463063|ref|XP_003601813.1| CCP [Medicago truncatula] gi|355490861|gb|AES72064.1| CCP [Medicago truncatula]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/563 (64%), Positives = 425/563 (75%), Gaps = 59/563 (10%)

Query: 16  IKTFPYPYG-----------YTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTK 64
           I+ + YP+            + Q R  S +K I  N+AV+PVLI+GAGPVGLVLSILLTK
Sbjct: 242 IRRYNYPFKDKTRNRALLIQHMQSRGFSKAKVINGNDAVLPVLIIGAGPVGLVLSILLTK 301

Query: 65  LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSV 124
           LGI C+VLE+NKAFS HPQAHFINNR   +FRK+DGL EEI+RSQPPVDLWRKF+YCTS+
Sbjct: 302 LGINCTVLERNKAFSKHPQAHFINNRSMEIFRKIDGLVEEIQRSQPPVDLWRKFVYCTSL 361

Query: 125 TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNH 184
           +G ILGSVDH+QPQD E VVSP+SVAHFSQYKL  LLLKQLE L F+ C SE +EG  N 
Sbjct: 362 SGSILGSVDHIQPQDLEHVVSPISVAHFSQYKLTMLLLKQLENLGFQTCASESSEG--NK 419

Query: 185 LLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG 244
                 ILMGHECVS+   +  + V AS +  GK  E++I C+ILIG DGAGSTVRKLVG
Sbjct: 420 QPCENIILMGHECVSIDTNNDLVTVTASSVNNGKRVEKDIHCSILIGADGAGSTVRKLVG 479

Query: 245 IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQV 304
           ID+ GEKDLQKLVSVHFLSK LG +LL E PGMLFFIFN+EAIGVLVAHDL++GEF+LQ+
Sbjct: 480 IDMRGEKDLQKLVSVHFLSKRLGKFLLKENPGMLFFIFNSEAIGVLVAHDLRQGEFVLQI 539

Query: 305 PFYPPQQNLEDFSP------------------EICEKLIFKLVGWELSDIDVIDIKPWVM 346
           PFYPPQQ +EDFSP                  + CEKLI KLVG E  D+DVIDIKPW+M
Sbjct: 540 PFYPPQQTIEDFSPKACEKLISKFVGQEFGDVDACEKLISKLVGQEFGDVDVIDIKPWIM 599

Query: 347 HAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASIL 406
           HAEVAE+F+CC N+I+LAGDA HRFPPAGGFGMNTG+QDAHNL WKIASV+K IAP S+L
Sbjct: 600 HAEVAERFICCGNRILLAGDAAHRFPPAGGFGMNTGIQDAHNLVWKIASVIKGIAPNSML 659

Query: 407 NTYETERKP----------------------------IAEFNTALSVQNFRAAMEVPSAL 438
           NTY+ ER+P                            I+ FNT LS++N+RAAM VP+ L
Sbjct: 660 NTYDMERRPVMLLSSIALFKFIFIFKYDKPIDVYCCQISVFNTRLSLENYRAAMSVPATL 719

Query: 439 GLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAK 498
           GLDPT+AN+VH++I    GS+LPS LQ+  L+ IF +GR QLSES+LNESNPLGSSRLAK
Sbjct: 720 GLDPTVANTVHKVIINGVGSILPSGLQRLALDSIFAIGRVQLSESVLNESNPLGSSRLAK 779

Query: 499 LRHIFEEGKSLQLQFPAEDLGFR 521
           LRHIFEEGKSLQLQFPAEDLGFR
Sbjct: 780 LRHIFEEGKSLQLQFPAEDLGFR 802

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126361|ref|XP_003564856.1| PREDICTED: putative polyketide hydroxylase-like [Brachypodium distachyon]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/479 (65%), Positives = 387/479 (80%), Gaps = 1/479 (0%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           +PV+IVGAGPVGLVLS LLTK GIKC+V+EK+  F+ HP+AHFINNR   +FRK DGLA 
Sbjct: 43  LPVVIVGAGPVGLVLSFLLTKFGIKCTVIEKSMEFTRHPRAHFINNRTMEIFRKFDGLAG 102

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
           +IE++QPPVDLWRKF+YCTS++G +LGSVDHM+ +DF+KV+SP+SVAHFSQYKL  LLL 
Sbjct: 103 DIEKAQPPVDLWRKFVYCTSLSGSVLGSVDHMKQEDFDKVISPISVAHFSQYKLVDLLLN 162

Query: 164 QLEKLNFKICTSEGTEG-LHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
           +LE + F  C  +   G L   L+   +ILMGHEC S+  TD+ I + ASF   G   ER
Sbjct: 163 KLEGIGFHTCFPDDIGGRLTRDLVLENKILMGHECSSIQLTDEGILLGASFNNGGTMQER 222

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
            + C +L+  DGA STVR+L GI + G +DLQKLVSVHFLS++LG YL +ERPGMLFFIF
Sbjct: 223 KLHCGLLLAADGAKSTVRELAGISMEGARDLQKLVSVHFLSRNLGKYLSSERPGMLFFIF 282

Query: 283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIK 342
           N +AIGVLVAHDL+ GEF+LQ+PFYPPQQ  +DFS ++CE++I KLVGWE +D+ V+DIK
Sbjct: 283 NPDAIGVLVAHDLEHGEFVLQIPFYPPQQMFDDFSIKVCEQIIVKLVGWEPADVQVLDIK 342

Query: 343 PWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP 402
           PWVMHAEVAEK+  C N++IL GDA HRFPPAGGFGMNTGVQDAHNLAWK+  +L  +A 
Sbjct: 343 PWVMHAEVAEKYTGCNNRVILVGDAAHRFPPAGGFGMNTGVQDAHNLAWKLGLLLNGVAG 402

Query: 403 ASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPS 462
            SIL TYE+ERKP+A  NT LSVQNF+AAM VP+ LGLDPT+ANSVHQ+IN   GSV+P 
Sbjct: 403 PSILQTYESERKPVAISNTKLSVQNFKAAMSVPATLGLDPTVANSVHQVINSSLGSVIPR 462

Query: 463 VLQKALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFEEGKSLQLQFPAEDLGFR 521
            LQK +LEG+F +GRAQ+S+ +LNE NP+GS RLA+LR I +EGKSLQLQFPAEDLGFR
Sbjct: 463 NLQKTVLEGLFSIGRAQVSDYILNEKNPIGSLRLARLRSILDEGKSLQLQFPAEDLGFR 521

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	572
TAIR|locus:2032482	709	EMB2421 "AT1G24340" [Arabidops	0.884	0.713	0.652	1.3e-178
TIGR_CMR|BA_3564	539	BA_3564 "FAD-binding monooxyge	0.653	0.693	0.293	6.3e-37
ASPGD|ASPL0000047100	579	AN9029 [Emericella nidulans (t	0.416	0.411	0.308	2.4e-27
UNIPROTKB|P27138	598	tfdB "2,4-dichlorophenol 6-mon	0.400	0.382	0.302	4.9e-27
ASPGD|ASPL0000033058	624	apdD [Emericella nidulans (tax	0.440	0.403	0.290	2.7e-25
ASPGD|ASPL0000070587	619	AN5044 [Emericella nidulans (t	0.375	0.347	0.328	2.4e-21
ASPGD|ASPL0000073547	566	AN10582 [Emericella nidulans (	0.409	0.413	0.295	2.1e-17
DICTYBASE|DDB_G0287695	678	DDB_G0287695 "FAD-binding mono	0.410	0.346	0.259	1.4e-16
ASPGD|ASPL0000055630	590	AN10084 [Emericella nidulans (	0.101	0.098	0.517	1.5e-16
UNIPROTKB|G4NAW2	614	MGG_03126 "2,4-dichlorophenol	0.430	0.400	0.279	3e-16

TAIR|locus:2032482 EMB2421 "AT1G24340" [Arabidopsis thaliana (taxid:3702)]

 Score = 1734 (615.5 bits), Expect = 1.3e-178, P = 1.3e-178
 Identities = 332/509 (65%), Positives = 400/509 (78%)

Query:    14 SRIKTFPYPYGYTQCRALSDSKTIVSNEAV-VPVLIVGAGPVGLVLSILLTKLGIKCSVL 72
             SR++   YP  Y Q + LS +      +A  +PVLIVGAGPVGLVLSILLTKLG+KC+V+
Sbjct:    18 SRVRV--YPVRYFQRKDLSSTNLFNGEDAAKLPVLIVGAGPVGLVLSILLTKLGVKCAVV 75

Query:    73 EKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSV 132
             +K  +FS HPQAHFINNR   +FR+LDGLAEEIERSQPPVDLWRKFIYCTS++G  LG+V
Sbjct:    76 DKATSFSKHPQAHFINNRSMEIFRELDGLAEEIERSQPPVDLWRKFIYCTSLSGSTLGTV 135

Query:   133 DHMQPQDFEKVVSPVSVAHFSQYXXXXXXXXXXXXXXXXICTSEGTEGLHNHLLQGREIL 192
             DHMQPQDFEKVVSP SVAHFSQY                +  S+ ++GL    +  R+IL
Sbjct:   136 DHMQPQDFEKVVSPASVAHFSQYKLTNLLLKRLEDLGFHVRGSKESDGLEADSVVARQIL 195

Query:   193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD 252
             MGHECV + A    I    SFLK GK  +RNIQC++L+G DGAGS VRKL  I++ GE+D
Sbjct:   196 MGHECVGIDANKDSITATVSFLKGGKHMKRNIQCSLLVGADGAGSAVRKLTVIEMRGERD 255

Query:   253 LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN 312
             LQKLVSVHF+S++LG+YL++ RPGMLFFIFNT+ IGVLVAHDL +GEF+LQ+P+YPPQQ+
Sbjct:   256 LQKLVSVHFMSRELGEYLISNRPGMLFFIFNTDGIGVLVAHDLLQGEFVLQIPYYPPQQS 315

Query:   313 LEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFP 372
             L DFSPE+C+ LIF LVG ELSD+DV DIKPWVMHAEVAEKF+CC N++ILAGDA HRFP
Sbjct:   316 LSDFSPEMCKMLIFNLVGHELSDLDVADIKPWVMHAEVAEKFMCCENRVILAGDAAHRFP 375

Query:   373 PAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
             PAGGFGMNTG+QDAHNLAWKIA++++  A +SIL TYETER+PIA  NT+LSVQNFRAAM
Sbjct:   376 PAGGFGMNTGIQDAHNLAWKIAALVQGSANSSILKTYETERRPIALSNTSLSVQNFRAAM 435

Query:   433 EVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQXXXXXXXXXXXXX 492
              VPSALGLDPT+ANSVH+ IN+  GS+LP+ LQKA+L+ +F +GRAQ             
Sbjct:   436 SVPSALGLDPTVANSVHRFINKTVGSILPTGLQKAILDNVFALGRAQLSESLLNESNPLG 495

Query:   493 XXRLAKLRHIFEEGKSLQLQFPAEDLGFR 521
               RL++L+ IFE GKSLQLQFPAEDLGFR
Sbjct:   496 NQRLSRLKSIFEGGKSLQLQFPAEDLGFR 524

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016491 "oxidoreductase activity" evidence=IEA

TIGR_CMR|BA_3564 BA_3564 "FAD-binding monooxygenase, PheA/TfdB family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 116/395 (29%), Positives = 186/395 (47%)

Query:    39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98
             SN+  VPVLIVG G  GL  ++ L K  I+  ++E++ + + HP+A  I  R   +FR+L
Sbjct:     3 SND--VPVLIVGGGLSGLASALFLAKHNIEYLLIERHPSTAIHPKAGGITFRTMELFREL 60

Query:    99 DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYXXX 158
              GL + I  +   ++  R  I   ++       +  M+   +E   +   +    +    
Sbjct:    61 -GLEQRIRSAGKTLENCRGRIAVHTIAEANQEELAQMRANQYE---NDEKLLQKIEEISP 116

Query:   159 XXXXXXXXXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGK 218
                          I   E         + G E+   HE VS    +Q   VIA+      
Sbjct:   117 SKQTACYQITLEEIMLQEAR-------ILGGELSFYHELVSYEQNEQ--GVIATIRNRET 167

Query:   219 CTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278
               E  I C+ +I  DGA S +R+ +GI   G   +       +   D+ +++  +  G  
Sbjct:   168 EKESVIHCDYVIAADGAKSKIREQLGISAEGRGTIGGYYMNIYFEADVSEFMQGDAFGFS 227

Query:   279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDID 337
               + + E +G L+  D     +I  V + P + +  EDF+ E C+++I   +G    + +
Sbjct:   228 M-VLHPEVLGALIPVD-NARRWIYHVSYDPLKGERPEDFTIERCKQIIQTAIGSTNVEPE 285

Query:   338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
             ++ + PW      A KF    N+I L GD+ H  PP GGFG NTG+QDAHNLAWK+A+V+
Sbjct:   286 IVSVLPWKAAESTATKFQD--NRIFLVGDSAHIMPPTGGFGSNTGIQDAHNLAWKLAAVI 343

Query:   398 KDIAPASILNTYETERKPIAEFNTALSVQN-FRAA 431
             K  A   +L TY  ER P+A+  T  ++   FRAA
Sbjct:   344 KGKAKPKLLETYHEERYPVAKLTTDYAISLLFRAA 378

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

ASPGD|ASPL0000047100 AN9029 [Emericella nidulans (taxid:162425)]

 Score = 271 (100.5 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
 Identities = 78/253 (30%), Positives = 129/253 (50%)

Query:   196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQK 255
             E VSV+  +  ++ I    +E + T   ++ N L+G DGA S V   +GI + G + +  
Sbjct:   139 EFVSVTQDESGVSTILRD-RESEKTYM-VRSNYLLGCDGARSAVVSALGIPITG-RQINT 195

Query:   256 LVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKE----GEFILQVPFYPPQQ 311
               +VH +  DL  Y+ + RPG L +I N EA       + +      E++  V  +P  +
Sbjct:   196 AFNVH-IQADLTKYIAH-RPGSLNWILNPEAPDWSAVGNFRMVRPWHEWV--VSMHPASK 251

Query:   312 NLEDFSPEICE--KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACH 369
             N + F+P   +  K + +++G     I V+    W ++ +VA+ +    ++I+  GDA H
Sbjct:   252 NGKRFTPTEADIIKRLHQMIGDTSIPIKVLSTFEWTINDQVADYWQ--RDRILCIGDAVH 309

Query:   370 RFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429
             R PP  G G NT + DA N+AWK+A V+K IA  ++L T   ERKP+ +     +     
Sbjct:   310 RHPPINGLGSNTCLSDAFNIAWKLAYVIKGIAKPALLETLSVERKPVGDGIVRRANTGME 369

Query:   430 AAMEVPSALGLDP 442
             A   + S +GL P
Sbjct:   370 AHRNLWSIIGLTP 382

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P27138 tfdB "2,4-dichlorophenol 6-monooxygenase" [Ralstonia eutropha JMP134 (taxid:264198)]

 Score = 259 (96.2 bits), Expect = 4.9e-27, Sum P(2) = 4.9e-27
 Identities = 73/241 (30%), Positives = 120/241 (49%)

Query:   221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGMLF 279
             E  ++   LIG DGA S V  +  +DL  E  + K  S++ L + DL  Y+ + RP +L+
Sbjct:   166 EFTVRSKYLIGADGANSRV--VSDLDLPLEGTMGKSGSINLLFEADLDRYVAH-RPSVLY 222

Query:   280 FIFNTEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
             ++    +    +G+ V   ++     L +  Y  +Q   + S     +++  L+G +   
Sbjct:   223 WVIQPGSDIGGLGIGVVRMVRPWNKWLAIWGYDVEQGPPEISESFARRIVHNLIGDDSVP 282

Query:   336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
             + +  I  W ++   A +      ++  AGDA HR PP  G G NT +QD+ NLAWKIA 
Sbjct:   283 LKIEGISTWTVNDMYATRLQ--QGRVFCAGDAVHRHPPTNGLGSNTSIQDSFNLAWKIAM 340

Query:   396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQLINRV 455
             VL   A  S+L+TY  ER PIA+     + ++      +  ALGL P  A S  ++ + +
Sbjct:   341 VLNGTADESLLDTYTIERAPIAKQVVCRANKSLEDFPPIAMALGL-PQ-AKSADEMKSNM 398

Query:   456 A 456
             A
Sbjct:   399 A 399

GO:0018666 "2,4-dichlorophenol 6-monooxygenase activity" evidence=NAS

GO:0046300 "2,4-dichlorophenoxyacetic acid catabolic process" evidence=NAS

ASPGD|ASPL0000033058 apdD [Emericella nidulans (taxid:162425)]

 Score = 251 (93.4 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
 Identities = 79/272 (29%), Positives = 131/272 (48%)

Query:   180 GLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239
             G+ N L+  R    G +       D  + V A     G+  +  +  + +IG DGA S +
Sbjct:   173 GMENPLIDFRA---GWKVKGARELDHGVEVEAIHSDTGEVWK--VSADFVIGCDGAHSAI 227

Query:   240 RKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAI-------GVLVA 292
             RK + I L G       V VHF S+DL      ++ G  + +F   A        G ++A
Sbjct:   228 RKSLEIPLDGGPIHGYAVLVHFKSRDLSRI---QKQGQFWHLFFPNAASDGGSIKGAVIA 284

Query:   293 HDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS-DIDVIDIKP-WVMHAEV 350
              D +   + +     P   + +  S EI   L+  + G      ID + ++  W     +
Sbjct:   285 QD-EVDTWTVHRFMRPDVDHTQLSSEEIVYDLLGGMGGQPFPIRIDEVLVRSTWTPSVAL 343

Query:   351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTY 409
             A  +    ++I +AGDACH+  P GG+GMNTG+ D +++ WK+A+V++  A PA++L+ Y
Sbjct:   344 ARSYAGPKHRIFIAGDACHQTVPTGGYGMNTGIADGYDIGWKLAAVIQGWAGPATLLS-Y 402

Query:   410 ETERKPIAEFNTALSVQNFRAAMEVPSALGLD 441
             E ER+P+ E     S  +    M++ + LGLD
Sbjct:   403 EKERRPVGELALQWSKVHMGNLMKMSAELGLD 434

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000070587 AN5044 [Emericella nidulans (taxid:162425)]

 Score = 241 (89.9 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
 Identities = 75/228 (32%), Positives = 118/228 (51%)

Query:   221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK-DLGDYLLNERPGMLF 279
             E  I+   L G DGA S + K +G+ L   K  Q L +++ L K DL  +L+  R G L 
Sbjct:   214 EYQIRTRYLFGADGARSQIVKQLGLPLT-VKPGQGL-AINVLVKADLS-HLVAHRKGNLH 270

Query:   280 FIFNTE----AIG-VLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKL--IFKLVGWE 332
             ++   +    + G + +   +K  +  + + F     +    SP   E L  + +L+G E
Sbjct:   271 WVMQPDRDHPSFGWMAIIRMVKPWDEWMFILFPTRGYDPASVSPSKEEYLHRVRELIGDE 330

Query:   333 LSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWK 392
              +  ++++I  W ++  VAE +    N +   GDA HR PP  G G NT +QDA NLAWK
Sbjct:   331 -TPAEILNISKWYINEIVAETY-SDGNNVFCLGDAVHRHPPLNGLGSNTCIQDAFNLAWK 388

Query:   393 IASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
             IA V + IA A +L+TY  ER+P+       + Q FR   ++ +ALG+
Sbjct:   389 IAYVHRGIAGAPLLSTYSAERQPVGHGIVTRANQAFRDHHQIWAALGM 436

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

ASPGD|ASPL0000073547 AN10582 [Emericella nidulans (taxid:162425)]

 Score = 189 (71.6 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 77/261 (29%), Positives = 112/261 (42%)

Query:   181 LHNHLLQ-GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239
             L N L   G  +  G E +  +  D  I             E   +   ++G DG  STV
Sbjct:   169 LENRLASFGVHVERGLEFIGFTENDSSITARLKSTDHENDIE-TCEAAFIVGCDGPHSTV 227

Query:   240 RKLVGIDLVGEKDLQK--LVSVHFLSKDL-GD--YLLNERPGMLFFIFNTE-AIGVLVAH 293
             R   GID  G        +  +        G+     NE   ML F ++ +    +  A 
Sbjct:   228 RHAAGIDYDGATYSHTFFVADIEGAGPTFNGEAHVSFNESEFMLLFPYDDDHRARISGAI 287

Query:   294 DLKEGEFI-LQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVA 351
             D +  E     + F       ED +P+I  K  FK+       ID ++    +  H  VA
Sbjct:   288 DDETAERKGTDISF-------EDIAPQI--KRSFKM------QIDKMNWFSTYRSHHRVA 332

Query:   352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYET 411
               F     ++ L GDA H   P GG GMNTG+ DA NLAWK+++V+K  A  S+L +YET
Sbjct:   333 ASF--AKGRVFLVGDAAHIHSPVGGQGMNTGIGDAINLAWKLSAVVKKQAGLSLLQSYET 390

Query:   412 ERKPIAEFNTALSVQNFRAAM 432
             ER+  A    + + + F AA+
Sbjct:   391 ERRAFALQLVSTTDKGFNAAI 411

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

DICTYBASE|DDB_G0287695 DDB_G0287695 "FAD-binding monooxygenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 182 (69.1 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 68/262 (25%), Positives = 123/262 (46%)

Query:   223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF-LSKDLGDYLLNERPGMLFFI 281
             N++  I+IG DG  S +RK +   + G    Q+ + V   + KD         P    FI
Sbjct:   194 NLKSKIIIGADGGNSFIRKSIASKMEGSSSKQRWLVVDAKIDKDHPPL-----PHYFQFI 248

Query:   282 FNTE--AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI 339
              N    A+ + +  +    EF++       +++ E   PEI   L+ +  G ++S +++I
Sbjct:   249 CNPSRPALTLPIPPNHYRWEFLIN----ENEKSEEMEKPEILNPLL-QSHGADISKLEII 303

Query:   340 DIKPWVMHAEVAEKFLCCYN--QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
                 +V    +A+ +   YN    +L GDACH  PP  G G+++G +D  N+AWKI   L
Sbjct:   304 RKACYVFQNRIADNW---YNGDTTLLIGDACHLVPPFLGMGISSGFRDVQNIAWKIELFL 360

Query:   398 KDIAP--ASILNTYETERKPIAEFNTALSVQNFRAAM---EVPSALG--LDPTIAN--SV 448
             K +     ++ ++Y+ ER+P  E  T  +       M      + L   L  T+ +  S+
Sbjct:   361 KGVISNHQTLFSSYQIERQPNIENITEKATHAGEMIMITNRYKAFLRNLLLSTLLSFPSI 420

Query:   449 HQLINRVAGSVLPSVLQKALLE 470
              +L +  AG   P++++  L++
Sbjct:   421 EKLFHNKAGMKPPNIIKHGLID 442

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

ASPGD|ASPL0000055630 AN10084 [Emericella nidulans (taxid:162425)]

 Score = 168 (64.2 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query:   360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417
             +I L GDACH   P  G GMN  +QD +N+ WK+A VLK +AP S+L TY  ER+ +A
Sbjct:   303 RIFLGGDACHTHSPKAGQGMNVSLQDGYNIGWKLAHVLKGLAPPSLLETYVLEREKVA 360

GO:0005575 "cellular_component" evidence=ND

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

UNIPROTKB|G4NAW2 MGG_03126 "2,4-dichlorophenol 6-monooxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 203 (76.5 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
 Identities = 76/272 (27%), Positives = 124/272 (45%)

Query:   186 LQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN--IQCNILIGTDGAGSTVRKLV 243
             L G +I    E  S    D  I V        K T  N  I+   L G DGA S +   +
Sbjct:   148 LNGFQIRWDTEYQSFEERDDGITVTVL----DKVTGLNYAIEAKYLFGADGARSRIVSQL 203

Query:   244 GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGV-----LVAHDLK-- 296
              + L         ++V  +  DL  +L+  R G L ++   +   +      V   +K  
Sbjct:   204 ELPLTRTPGGGLAINVQ-IKADLS-HLMKYRTGNLHWVMQPDREHIDFCFFAVVRMVKPW 261

Query:   297 -EGEFILQVPFYPPQQNLEDFSP--EICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEK 353
              E  FIL    +P +    D  P  E  +K + +L+G + +  +++ +  W ++  VA+ 
Sbjct:   262 TEWMFIL----FPVKGYTMDPRPTTEQYQKAVRQLIGDD-TPFEIMRVNTWTVNETVADD 316

Query:   354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETER 413
             +     +++  GDA HR PP  G G NT +QDA NLAWK+A V++  A   +L TY  ER
Sbjct:   317 YQ--RGRVMCLGDAVHRHPPFNGLGSNTCIQDAFNLAWKVAYVMQGKAGPELLKTYTPER 374

Query:   414 KPIAEFNTALSVQNFRAAMEVPSALG-LDPTI 444
             +P+ +     +   FR    + +A+G + PT+
Sbjct:   375 QPVGKGIVKRANDGFRDHNHIFNAIGHILPTL 406

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.13.n3	LOW CONFIDENCE prediction!
3rd Layer	1.14.13	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	572
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	5e-74
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	4e-66
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	6e-37
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	2e-32
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	7e-32
PRK08244	493	PRK08244, PRK08244, hypothetical protein; Provisio	5e-29
PRK06834	488	PRK06834, PRK06834, hypothetical protein; Provisio	3e-18
PRK07190	487	PRK07190, PRK07190, hypothetical protein; Provisio	6e-17
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	1e-16
PRK08294	634	PRK08294, PRK08294, phenol 2-monooxygenase; Provis	2e-15
PRK08132	547	PRK08132, PRK08132, FAD-dependent oxidoreductase;	4e-07
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	4e-07
TIGR01989	437	TIGR01989, COQ6, ubiquinone biosynthesis monooxyge	6e-06
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	3e-05
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	3e-05
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	4e-05
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	6e-05
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	9e-05
PRK07045	388	PRK07045, PRK07045, putative monooxygenase; Review	1e-04
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	1e-04
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	3e-04
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	5e-04
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	8e-04
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	9e-04
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	0.001
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	0.001
TIGR02360	390	TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-mon	0.002
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	0.004
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	0.004

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score =  239 bits (612), Expect = 5e-74
 Identities = 112/379 (29%), Positives = 183/379 (48%), Gaps = 41/379 (10%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
             VLIVG GP GL+L++LL + G++  ++E++   S  P+A  +N R   + R+  GL +
Sbjct: 2   TDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQA-GLED 60

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
            I     P +      Y TS               DF    SP  V  + Q +L  +L +
Sbjct: 61  RILAEGAPHEGMGLAFYNTS---------RRRADLDFL--TSPPRVTVYPQTELEPILRE 109

Query: 164 QLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN 223
             E                     G ++  G E +S+      +  +    ++G   E  
Sbjct: 110 HAEAR-------------------GAQVRFGTEVLSLEQDGDGVTAVVRDRRDG--EEYT 148

Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVG-EKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
           ++   L+G DG  S VRK +GI+  G E      + V F + DL D +  ER  + + I 
Sbjct: 149 VRAKYLVGCDGGRSPVRKQLGIEFEGFEGVPFGSLDVLFDAPDLSDPV--ERAFVHYLIG 206

Query: 283 NTEAIGVLV--AHDLKEGEFILQVPFYPPQQN-LEDFSPEICEKLIFKLVGWELSDIDVI 339
              + G +V          + +QVP+ P  +   E+F+ E  ++ +   VG +L+D++++
Sbjct: 207 APHSRGFMVGPWRSAGRSRYYVQVPWDPEVEERPEEFTDEEAKQRLRSAVGIDLADVEIL 266

Query: 340 DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
               W + + VA ++     ++ LAGDA H  PP GG G+NTG+QDA NLAWK+A+VL+ 
Sbjct: 267 WKSIWGVRSRVATRYR--KGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNLAWKLAAVLRG 324

Query: 400 IAPASILNTYETERKPIAE 418
            A  ++L+TYE ER+P+A 
Sbjct: 325 TAGEALLDTYEAERRPVAW 343

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score =  224 bits (573), Expect = 4e-66
 Identities = 118/402 (29%), Positives = 190/402 (47%), Gaps = 27/402 (6%)

Query: 45  PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE 104
           PVLIVG GPVGL L++ L + G+   ++E+    + +P+A+  + R    FR+L G+A+E
Sbjct: 9   PVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRL-GIADE 67

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ 164
           +  +  PVD      Y T +TG  L        ++    V     +  S    +++  K 
Sbjct: 68  VRSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKY 127

Query: 165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNI 224
           LE +  +   ++    L            GH           +      L  G      I
Sbjct: 128 LEPILLEHAAAQPGVTLRY----------GHRLTDFEQDADGVTATVEDLDGG--ESLTI 175

Query: 225 QCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNT 284
           + + L+G DGA S VR+ +GI   G   LQ+ +S++  +  L   L+   P  ++++FN 
Sbjct: 176 RADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAA-LVGHDPAWMYWLFNP 234

Query: 285 EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPW 344
           +  GVLVA D ++     Q+     +  ++D         + + VG ++ D +V+ + PW
Sbjct: 235 DRRGVLVAIDGRDEWLFHQLRGGEDEFTIDDVDARA---FVRRGVGEDI-DYEVLSVVPW 290

Query: 345 VMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPAS 404
                VA+ +     ++ LAGDA H F P GG+GMNTG+ DA NLAWK+A+VL   A  +
Sbjct: 291 TGRRLVADSYR--RGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPA 348

Query: 405 ILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIAN 446
           +L++YE ER+PIA        +N   A     ALG  P    
Sbjct: 349 LLDSYEAERRPIA-------ARNTDYARRNADALGSFPVPPE 383

Length = 545

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score =  143 bits (362), Expect = 6e-37
 Identities = 119/406 (29%), Positives = 176/406 (43%), Gaps = 75/406 (18%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ----AHFINNRYALVFRKLDGL 101
           VLIVGAGP GL L+I L + G+   ++EK    +  P        I  R   VF  L G+
Sbjct: 6   VLIVGAGPTGLTLAIELARRGVSFRLIEK----APEPFPGSRGKGIQPRTQEVFDDL-GV 60

Query: 102 AEEI---ERSQPPVDLWRKFIYCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYK 156
            + +       PP+ ++R         G +  S    H++P   E    P+ V    Q++
Sbjct: 61  LDRVVAAGGLYPPMRIYRD-------DGSVAESDMFAHLEPTPDEPYPLPLMVP---QWR 110

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
             ++L ++L +L                   G  +  G E V          V A     
Sbjct: 111 TERILRERLAEL-------------------GHRVEFGCELVGFEQDAD--GVTARVAGP 149

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKD-----LQKLVSVHFLSKDLGDYLL 271
               E  ++   L+G DG  S VRK +GI   GE       L   VS+  L +D      
Sbjct: 150 A--GEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWP 207

Query: 272 NERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGW 331
           +   GM+       A+  L   DL    F +Q P   P     D S +    L+ +  G 
Sbjct: 208 DGDMGMI-------ALCPLPGTDL----FQIQAPL--PPGGEPDLSADGLTALLAERTG- 253

Query: 332 ELSDIDVIDIKPWV----MHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAH 387
             +DI +  +  W     M+A +A+++     ++ LAGDA H  PPAGG G+NT VQDA+
Sbjct: 254 -RTDIRLHSV-TWASAFRMNARLADRYRV--GRVFLAGDAAHVHPPAGGQGLNTSVQDAY 309

Query: 388 NLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAME 433
           NL WK+A+VL   AP ++L+TYE ER+P+A     LS +   A   
Sbjct: 310 NLGWKLAAVLAG-APEALLDTYEEERRPVAAAVLGLSTELLDAIKR 354

Length = 502

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score =  130 bits (329), Expect = 2e-32
 Identities = 106/409 (25%), Positives = 170/409 (41%), Gaps = 92/409 (22%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
             V+IVGAGPVGL L+ LL + G++  VLE+       P+A  I++    V + + GLA+
Sbjct: 11  TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAI-GLAD 69

Query: 104 EIER-SQPPVDLWRKFIYCTSVTGPILGSVDH--MQPQDFEKVVSPVSVAHFSQYKLNKL 160
           E+   + P   + R   +  +  G  L  +         +     P   A F Q  L  +
Sbjct: 70  EVLPHTTPNHGM-R---FLDA-KGRCLAEIARPSTGEFGW-----PRRNA-FHQPLLEAV 118

Query: 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
           L   L +                       +  GHE  +++  D  + V  +   +G+  
Sbjct: 119 LRAGLARF------------------PHVRVRFGHEVTALTQDDDGVTVTLTDA-DGQ-- 157

Query: 221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLN-------E 273
              ++   ++G DGA S VR+ +G+        ++ + V  L  +      +        
Sbjct: 158 RETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPA 217

Query: 274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF-SPEICEKLIFKLVGWE 332
           RP             V + H  +  EF+L      P +  E   SPE           W 
Sbjct: 218 RPYTS----------VRLPHGRRRWEFML-----LPGETEEQLASPE---------NVWR 253

Query: 333 LSDIDVIDIKPWVM---------------HAEVAEKFLCCYNQIILAGDACHRFPPAGGF 377
           L       + PW                 HA VA+++     +++LAGDA H  PP  G 
Sbjct: 254 L-------LAPWGPTPDDAELIRHAVYTFHARVADRWRS--GRVLLAGDAAHLMPPFAGQ 304

Query: 378 GMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ 426
           GMN+G++DA NLAWK+A+VL+  A  ++L+TYE ER+P A     L+V+
Sbjct: 305 GMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVR 353

Length = 500

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  126 bits (319), Expect = 7e-32
 Identities = 83/406 (20%), Positives = 141/406 (34%), Gaps = 88/406 (21%)

Query: 43  VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVF-----RK 97
           ++ V IVGAGP GL L++ L + G+  ++LE+            +     +       R 
Sbjct: 2   MLDVAIVGAGPAGLALALALARAGLDVTLLERAPR-------ELLERGRGIALSPNALRA 54

Query: 98  LD--GLAEEIE-RSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH--- 151
           L+  GL + +E    PP+                   V  +       ++   +      
Sbjct: 55  LERLGLWDRLEALGVPPLH------------------VMVVDDGGRRLLIFDAAELGRGA 96

Query: 152 ----FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCI 207
                 +  L   LL+    L                      +  G E  +V      +
Sbjct: 97  LGYVVPRSDLLNALLEAARALP------------------NVTLRFGAEVEAVEQDGDGV 138

Query: 208 NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV------HF 261
            V  SF          +  ++L+G DGA S VR+  GI     +D  +   V        
Sbjct: 139 TVTLSF------DGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEP 192

Query: 262 LSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC 321
                G+   +  P  L  + +  +  V              +P  P +  L+  S E  
Sbjct: 193 HEGRAGERFTHAGPFALLPLPDNRSSVVWS------------LPPGPAED-LQGLSDEEF 239

Query: 322 EKLIFKLVGWELSDIDVIDIKP---WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFG 378
            + + + +G       V  +     + +   VAE++     +++L GDA H   P  G G
Sbjct: 240 LRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERY--RRGRVVLIGDAAHAMHPLAGQG 297

Query: 379 MNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424
            N  ++DA  LA  +A+  +  A A+ L  YE  R+P AE    LS
Sbjct: 298 ANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLS 343

Length = 387

>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional

 Score =  120 bits (302), Expect = 5e-29
 Identities = 105/387 (27%), Positives = 159/387 (41%), Gaps = 74/387 (19%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEK-------NKAFSTHPQAHFINNRYALVFRKL 98
           V+I+G GPVGL+L+  L   G+K  V+E+       +KA + HP+         L    +
Sbjct: 5   VIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRT--------LEILDM 56

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLN 158
            GL E                                    F +    +   HF+     
Sbjct: 57  RGLLER-----------------------------------FLEKGRKLPSGHFAGLD-T 80

Query: 159 KLLLKQLE-KLNFK--ICTSEGTEGLHNHLLQ-GREILMGHECVSVSATDQCINVIASFL 214
           +L    L+   N+   +  +E  + L  H    G EI  G E ++V      + V+    
Sbjct: 81  RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVR-- 138

Query: 215 KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274
             G    R +  + ++G DGAGS VRK  GI   G  D          +  LGD +L + 
Sbjct: 139 --GPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPG-TDAT-------FTAMLGDVVLKDP 188

Query: 275 PGMLFFIFNTEAIGVLVAHDLKEGEF-ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL 333
           P        T   GV++   L  G + +L +    PQ   ++  P   E+L   L+    
Sbjct: 189 PPSSVLSLCTREGGVMIV-PLSGGIYRVLIIDPERPQVPKDE--PVTLEELKTSLIRICG 245

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCY--NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAW 391
           +D  + D   W+     A +    Y   +I LAGDA H   PAGG G+N G+QDA NL W
Sbjct: 246 TDFGLNDPV-WMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGW 304

Query: 392 KIASVLKDIAPASILNTYETERKPIAE 418
           K+A+ +K  AP  +L++Y  ER P+  
Sbjct: 305 KLAAAIKGWAPDWLLDSYHAERHPVGT 331

Length = 493

>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional

 Score = 87.4 bits (217), Expect = 3e-18
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           ++LAGDA H   P GG G+NTGVQDA NL WK+A V+K  +P S+L+TY  ER P+A 
Sbjct: 267 VLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAA 324

Length = 488

>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional

 Score = 83.3 bits (206), Expect = 6e-17
 Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTY 409
           VAE F    ++I LAGDACH     GG G+NTG+ DA NL WK+  V+   A   +L +Y
Sbjct: 267 VAEHF-FIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSY 325

Query: 410 ETERKPIA 417
           E ERKP+A
Sbjct: 326 EAERKPVA 333

Length = 487

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 82.6 bits (205), Expect = 1e-16
 Identities = 29/62 (46%), Positives = 44/62 (70%), Gaps = 2/62 (3%)

Query: 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYET 411
           ++F   + +++ AGDA H+  P G  G N+G+QDA NLAWK+A VL+  AP S+L++Y +
Sbjct: 294 DRFR--HGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYAS 351

Query: 412 ER 413
           ER
Sbjct: 352 ER 353

Length = 547

>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional

 Score = 79.3 bits (196), Expect = 2e-15
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA--- 417
           + +AGDACH      G GMN  +QD  NL WK+A+VL   +P  +L+TY  ER+ IA   
Sbjct: 342 VFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQEL 401

Query: 418 -----EFNTALSVQNFRAAMEVPSAL 438
                E++T ++          P+ L
Sbjct: 402 IDFDREWSTMMAAPPKEGGGVDPAEL 427

Length = 634

>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 22 PYGYTQCRALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST 80
           + Y                A  PV++VGAGPVGL L+I L + G+   +L+ +   ST
Sbjct: 7  KFPYRPHADQDADDP-----ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST 60

Length = 547

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 79/381 (20%), Positives = 133/381 (34%), Gaps = 63/381 (16%)

Query: 46  VLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE 104
           V+IVG G VGL L++ L++LG IK +++E N        A    +  +L      G  + 
Sbjct: 2   VIIVGGGLVGLSLALALSRLGKIKIALIEANSP----SAAQPGFDARSLALS--YGSKQI 55

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKV---VSPVSVAHFSQY----KL 157
           +E+    + LW K         PIL  +       F       S   +           L
Sbjct: 56  LEK----LGLWPKL---APFATPIL-DIHVSDQGHFGATHLRASEFGLPALGYVVELADL 107

Query: 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG 217
            + LL +L  L   I                 ++        +      + V        
Sbjct: 108 GQALLSRLALLT-NI-----------------QLYCPARYKEIIRNQDYVRVTLD----- 144

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
               + ++  +LI  DGA S VR+L+ I        Q  +  +   +        ER   
Sbjct: 145 --NGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFER--- 199

Query: 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIF--KLVGWELS 334
            F      A+  L   D      +  +P    Q   + +      E L    +  GW L 
Sbjct: 200 -FTPHGPLAL--LPLKDNYRSSLVWCLP--SKQADTIANLPDA--EFLAELQQAFGWRLG 252

Query: 335 DI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393
            I  V + K + +   +AE  +  + +++L G+A     P  G G N G++D   LA  +
Sbjct: 253 KITQVGERKTYPLKLRIAETHV--HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVL 310

Query: 394 ASVLKDIAPASILNTYETERK 414
                D+   ++L  Y   R+
Sbjct: 311 IDARIDLGTYALLQEYLRRRQ 331

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA---SVLKDIAPASILNTYETER 413
              ++ L GDA HR  P  G G+N G  D  +L   +A   SV  DI   S L  YE ER
Sbjct: 331 VTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERER 390

Query: 414 KP 415
             
Sbjct: 391 YA 392

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone. Length = 437

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 81/460 (17%), Positives = 135/460 (29%), Gaps = 109/460 (23%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD-GLAEE 104
           V+IVGAGP G   +  L K G+   VLEK       P              +L     EE
Sbjct: 6   VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGL--SPRALEELIPDFDEE 63

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ 164
           IER      +    IY       I   V          +V           K +K L ++
Sbjct: 64  IER-----KVTGARIYFPGEKVAIEVPV------GEGYIVDRA--------KFDKWLAER 104

Query: 165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNI 224
            E+                    G E+  G     V   D    V+             +
Sbjct: 105 AEE-------------------AGAELYPGTRVTGVIRED--DGVVVGVRAGDD----EV 139

Query: 225 QCNILIGTDGAGSTVRKLVGIDLVGEKDL----QKLVSVHFLSKDLGDYLLNERPGMLFF 280
           +  ++I  DG  S + + +G+     +D     ++++ V                G   +
Sbjct: 140 RAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGY 199

Query: 281 IF-----NTEA---IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE 332
            +     +  A   IGVL+                P  + LE F      +         
Sbjct: 200 GWIFPLGDGHANVGIGVLLDDPSLS----------PFLELLERFKEHPAIR--------- 240

Query: 333 LSDIDVIDIKPWVMHA----EVAEKFLCCYNQIILAGDA-CHRFPPAGGFGMNTGVQDAH 387
              +    I  +          A + L     ++L GDA     P  G  G+   ++   
Sbjct: 241 -KLLLGGKILEYAAGGIPEGGPASRPLVGDG-VLLVGDAAGFVNPLTGE-GIRYAIKSG- 296

Query: 388 NLAWKIASVLKDI--APASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIA 445
            LA   A  + +        L  YE   +         S++  +  +             
Sbjct: 297 KLA---AEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLL------------- 340

Query: 446 NSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLL 485
               +L++R   +++  +  K LL  I K  R  +   LL
Sbjct: 341 ----RLLDRTLPALIKLLADKDLLGLIKKYLRKLILYPLL 376

Length = 396

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA---SVLKDIAPASILNTYETERKP 415
           + L GDA H   P  G G+N G++D   LA  +       +DI    +L  YE  R+ 
Sbjct: 280 LALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRF 337

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPA 403
           W +  +VA +F     +  L G+A H FPP G  G+N G++D   L   +    +D   A
Sbjct: 267 WPLSGQVAHRF--AAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSA 324

Query: 404 SILNTYETERKP 415
           ++L  Y+  R+P
Sbjct: 325 AVLAAYDRARRP 336

Length = 388

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 45.2 bits (108), Expect = 6e-05
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
            IVG GP G++L +LL + G+  +VLEK+  F
Sbjct: 9  CCIVGGGPAGMMLGLLLARAGVDVTVLEKHADF 41

Length = 407

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 363 LAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL---KDIAPASILNTYETERKP 415
           L GDA H   P GG G+N G++DA  LA  + +     +DI   ++L  YE  RK 
Sbjct: 298 LVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKR 353

Length = 415

>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 18/97 (18%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-IAPASILNTYETERKPIAE- 418
           ++L GDA H   P  G GMN  ++DA  L   +   L   IA A  L  +E  R+P+ E 
Sbjct: 287 VVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEA 346

Query: 419 ---FNTALS---------VQNFRAAMEV----PSALG 439
              +  AL+         V NFR+ ++      + LG
Sbjct: 347 VISYGHALATTYHDRAALVANFRSQLQTSGRDAAWLG 383

Length = 388

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 44.0 bits (105), Expect = 1e-04
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
            V I+GAGP GL+L  LL   GI   VLE+
Sbjct: 3  TQVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33

Length = 392

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS--VLKDIAPASILNTYETERK 414
           + L GDA H   P  G GMN G++D   LA  +A     +D+    +L  YE  R+
Sbjct: 282 VALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARR 337

Length = 388

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 54/227 (23%), Positives = 80/227 (35%), Gaps = 64/227 (28%)

Query: 46  VLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNR-YALVFRKLDGLAE 103
           ++IVG GPVGL L++ L + G +K +++E        P     +NR  AL          
Sbjct: 2   IVIVGGGPVGLALALALARSGGLKVALIEATPL--PAPADPGFDNRVSAL---------- 49

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
               S   + L  K           LG  D ++P        P+   H S          
Sbjct: 50  ----SAASIRLLEK-----------LGVWDKIEPAR----AQPIRDIHVSDGG------- 83

Query: 164 QLEKLNFKICTSEGTEGL----HNHLLQGR------------EILMGHECVSVSATDQCI 207
               L+F      G E L     N +LQ               IL     V +      +
Sbjct: 84  SFGALHFD-ADEIGLEALGYVVENRVLQQALWERLQELPNRVTILCPARVVELPRHSDHV 142

Query: 208 NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ 254
            +    L +G    + ++  +L+G DGA S VR+L GI   G    Q
Sbjct: 143 ELT---LDDG----QQLRARLLVGADGANSKVRQLAGIPTTGWDYGQ 182

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 41.3 bits (98), Expect = 8e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V V IVGAGP GL  +  L K G+K +V E+  +F
Sbjct: 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60

Length = 257

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score = 41.5 bits (98), Expect = 9e-04
 Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 60/215 (27%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           +++VGAGP GL  +  L   G+K +++E+       P A   +  +       DG   EI
Sbjct: 6   IVVVGAGPAGLSFARSLAGSGLKVTLIER------QPLAALADPAF-------DG--REI 50

Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL 165
             +    ++ ++           LG+ D + P+D    +SP+  A     +         
Sbjct: 51  ALTHASREILQR-----------LGAWDRI-PED---EISPLRDAKVLNGRSPFA----- 90

Query: 166 EKLNFKICTSEGTEGL----HNHLL-----------QGREILMGHECVSVSATDQCINVI 210
             L F      G + L     NHL+            G E+L G    +V   D    V 
Sbjct: 91  --LTFDA-RGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVT 147

Query: 211 ASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI 245
              L  G    R +   +L+  D   S  R+ +GI
Sbjct: 148 ---LANG----RRLTARLLVAADSRFSATRRQLGI 175

Length = 392

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 40.9 bits (97), Expect = 0.001
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 13/104 (12%)

Query: 302 LQVPFYPPQQNLEDFSPE-ICEKLIFKL---VGWELSDIDVID--IKPWVMHAEVAEKFL 355
           LQ P       +ED+S E   ++L  +L       L     I+  I P  + + VAE   
Sbjct: 223 LQCP---LDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAP--LRSFVAEPMQ 277

Query: 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD 399
             Y ++ LAGDA H  PP G  G+N    D   LA  +    ++
Sbjct: 278 --YGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE 319

Length = 392

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+++GAG  GL  + LL + G+K +VLEKN
Sbjct: 6  VVVIGAGLNGLAAAALLARAGLKVTVLEKN 35

Length = 487

>gnl|CDD|131413 TIGR02360, pbenz_hydroxyl, 4-hydroxybenzoate 3-monooxygenase

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNL 389
           Y ++ LAGDA H  PP G  G+N    D H L
Sbjct: 278 YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYL 309

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway [Energy metabolism, Other]. Length = 390

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 35.9 bits (84), Expect = 0.004
 Identities = 16/28 (57%), Positives = 17/28 (60%)

Query: 48 IVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          IVGAG  GLV + LL K G    VLEK 
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKR 28

Length = 66

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
          V+I+GAGP GL  +I   K G+   ++EK
Sbjct: 2  VIIIGAGPCGLACAIEAQKAGLSYLIIEK 30

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	572
PRK06126	545	hypothetical protein; Provisional	100.0
PRK08294	634	phenol 2-monooxygenase; Provisional	100.0
PRK06184	502	hypothetical protein; Provisional	100.0
PRK07190	487	hypothetical protein; Provisional	100.0
PRK08244	493	hypothetical protein; Provisional	100.0
PRK08132	547	FAD-dependent oxidoreductase; Provisional	100.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	100.0
PRK06834	488	hypothetical protein; Provisional	100.0
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	100.0
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
PRK08013	400	oxidoreductase; Provisional	100.0
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	100.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	100.0
PRK07045	388	putative monooxygenase; Reviewed	100.0
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	100.0
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK06996	398	hypothetical protein; Provisional	100.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	100.0
PRK06475	400	salicylate hydroxylase; Provisional	100.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	100.0
PRK07588	391	hypothetical protein; Provisional	100.0
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	100.0
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	100.0
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	100.0
PRK06753	373	hypothetical protein; Provisional	100.0
PRK07538	413	hypothetical protein; Provisional	100.0
PRK08163	396	salicylate hydroxylase; Provisional	100.0
PRK09126	392	hypothetical protein; Provisional	100.0
PRK06185	407	hypothetical protein; Provisional	100.0
PRK05868	372	hypothetical protein; Validated	100.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK06847	375	hypothetical protein; Provisional	100.0
PRK07236	386	hypothetical protein; Provisional	100.0
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	100.0
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	100.0
PLN02985	514	squalene monooxygenase	100.0
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	100.0
PTZ00367	567	squalene epoxidase; Provisional	100.0
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.97
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.97
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.97
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.97
PRK11445	351	putative oxidoreductase; Provisional	99.96
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.96
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.94
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.94
PRK10015	429	oxidoreductase; Provisional	99.92
PLN02697	529	lycopene epsilon cyclase	99.92
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.91
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.91
PRK10157	428	putative oxidoreductase FixC; Provisional	99.91
PLN02463	447	lycopene beta cyclase	99.89
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.87
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.85
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.83
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.47
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.42
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	99.41
COG2081	408	Predicted flavoproteins [General function predicti	99.3
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.27
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.22
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.22
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.2
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.17
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.17
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.13
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.12
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.11
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.11
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.1
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.08
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.05
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.05
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.04
COG0579	429	Predicted dehydrogenase [General function predicti	99.02
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.02
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.99
PRK05257	494	malate:quinone oxidoreductase; Validated	98.98
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.98
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.93
PRK07233	434	hypothetical protein; Provisional	98.91
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.9
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.89
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.89
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.88
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.87
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.86
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.83
PRK08274	466	tricarballylate dehydrogenase; Validated	98.82
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.8
PLN02661	357	Putative thiazole synthesis	98.79
PRK07804	541	L-aspartate oxidase; Provisional	98.79
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.78
PRK07121	492	hypothetical protein; Validated	98.77
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.77
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.77
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.76
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.75
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.75
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.74
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.74
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.74
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.74
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.74
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.73
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.73
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.72
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.7
PRK06175	433	L-aspartate oxidase; Provisional	98.7
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.7
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.69
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.69
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.68
PLN02612	567	phytoene desaturase	98.68
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.67
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.66
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.66
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.66
PLN02268	435	probable polyamine oxidase	98.66
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.65
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.63
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.62
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.62
PLN02676	487	polyamine oxidase	98.62
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.61
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.61
PRK08275	554	putative oxidoreductase; Provisional	98.61
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.61
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.6
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.59
PRK09077	536	L-aspartate oxidase; Provisional	98.59
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.58
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.58
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.57
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.57
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.53
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.53
PRK08401	466	L-aspartate oxidase; Provisional	98.53
PRK08071	510	L-aspartate oxidase; Provisional	98.51
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.51
PLN02815	594	L-aspartate oxidase	98.49
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.48
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.48
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.46
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.43
PRK07512	513	L-aspartate oxidase; Provisional	98.41
PLN02568	539	polyamine oxidase	98.41
KOG2853	509	consensus Possible oxidoreductase [General functio	98.4
PRK10262	321	thioredoxin reductase; Provisional	98.39
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.38
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.37
PRK09897	534	hypothetical protein; Provisional	98.37
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.35
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.35
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.35
PRK07395	553	L-aspartate oxidase; Provisional	98.35
PRK06370	463	mercuric reductase; Validated	98.32
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.31
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.31
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.31
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.31
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.29
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.28
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.26
PRK14694	468	putative mercuric reductase; Provisional	98.25
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.25
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.25
PLN02507	499	glutathione reductase	98.24
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.24
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.23
PLN03000	881	amine oxidase	98.21
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.21
PRK12839	572	hypothetical protein; Provisional	98.21
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.2
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.2
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.19
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.18
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.14
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.13
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.11
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.09
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.09
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.07
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.07
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.04
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.03
PRK13748	561	putative mercuric reductase; Provisional	98.03
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.03
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.02
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.01
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.0
PRK14727	479	putative mercuric reductase; Provisional	98.0
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.0
PTZ00052	499	thioredoxin reductase; Provisional	97.99
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.97
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.96
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.95
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.93
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.92
PRK07208	479	hypothetical protein; Provisional	97.92
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.91
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.88
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.87
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.86
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.85
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.85
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.84
PRK06116	450	glutathione reductase; Validated	97.84
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.82
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.82
PLN02852	491	ferredoxin-NADP+ reductase	97.82
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.82
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.81
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.79
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.78
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.77
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.77
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.76
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.75
PLN02576	496	protoporphyrinogen oxidase	97.74
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.74
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.73
PLN02487	569	zeta-carotene desaturase	97.72
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.72
TIGR02053	463	MerA mercuric reductase. This model represents the	97.71
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.7
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.7
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.7
PRK06370	463	mercuric reductase; Validated	97.69
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.69
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.68
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.67
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.66
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.65
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.64
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.63
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.62
COG3349	485	Uncharacterized conserved protein [Function unknow	97.62
PTZ00058	561	glutathione reductase; Provisional	97.62
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.61
PRK06116	450	glutathione reductase; Validated	97.61
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.59
TIGR02053	463	MerA mercuric reductase. This model represents the	97.59
PRK12831	464	putative oxidoreductase; Provisional	97.57
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.56
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.55
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.54
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.52
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.51
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.5
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.49
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.48
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.48
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.48
PLN02507	499	glutathione reductase	97.48
PRK07846	451	mycothione reductase; Reviewed	97.47
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.46
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.44
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.44
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.43
PTZ00188	506	adrenodoxin reductase; Provisional	97.42
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.42
PRK02106	560	choline dehydrogenase; Validated	97.41
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.4
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.39
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.39
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.39
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.39
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.37
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.37
KOG2852	380	consensus Possible oxidoreductase [General functio	97.36
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.32
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.32
COG3573	552	Predicted oxidoreductase [General function predict	97.31
PLN02546	558	glutathione reductase	97.31
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.3
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.28
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.28
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.26
PLN02529	738	lysine-specific histone demethylase 1	97.26
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.25
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.23
PRK14694	468	putative mercuric reductase; Provisional	97.22
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.21
PRK14727	479	putative mercuric reductase; Provisional	97.21
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.21
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.17
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.17
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.16
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.16
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.16
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.15
PTZ00052	499	thioredoxin reductase; Provisional	97.15
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.13
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.11
PTZ00058	561	glutathione reductase; Provisional	97.09
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.09
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.09
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.08
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.08
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	97.08
PRK07846	451	mycothione reductase; Reviewed	97.07
PRK13748	561	putative mercuric reductase; Provisional	97.06
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.06
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.05
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.04
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.03
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.02
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.01
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.0
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.99
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.97
PLN02785	587	Protein HOTHEAD	96.96
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.95
PRK10262	321	thioredoxin reductase; Provisional	96.94
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.93
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.93
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.83
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	96.83
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.74
PRK13984	604	putative oxidoreductase; Provisional	96.69
PLN02976	1713	amine oxidase	96.66
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.65
PLN02546	558	glutathione reductase	96.58
COG2907	447	Predicted NAD/FAD-binding protein [General functio	96.46
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.4
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.4
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	96.4
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.33
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	96.33
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.31
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.29
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.14
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	96.03
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	96.01
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.95
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.9
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.84
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	95.53
PRK12831	464	putative oxidoreductase; Provisional	95.45
KOG2960	328	consensus Protein involved in thiamine biosynthesi	95.4
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	95.39
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.31
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.11
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	95.03
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.02
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	94.95
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.74
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.72
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	94.7
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	94.68
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	94.66
PRK12814	652	putative NADPH-dependent glutamate synthase small	94.63
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.55
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.53
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	94.42
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.4
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	94.36
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	94.19
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.07
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.96
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.57
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	93.56
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	93.56
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	93.44
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	93.4
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	93.39
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.3
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.22
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	93.1
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.99
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	92.96
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.82
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.69
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	92.56
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.53
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	92.49
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.46
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.41
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.39
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.22
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.13
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.05
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.99
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.92
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.87
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	91.76
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	91.71
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.66
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	91.64
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.64
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.58
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	91.58
PRK15116	268	sulfur acceptor protein CsdL; Provisional	91.56
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	91.29
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	91.27
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	91.26
PRK04148	134	hypothetical protein; Provisional	91.14
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	91.11
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	91.07
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	91.05
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	90.99
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	90.94
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	90.64
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	90.59
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.52
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.51
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	90.48
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	90.48
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	90.37
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	90.3
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	90.27
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	90.11
PTZ00082	321	L-lactate dehydrogenase; Provisional	90.03
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.98
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	89.95
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	89.89
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	89.88
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.84
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	89.76
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	89.63
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	89.62
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.49
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.45
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	89.44
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	89.38
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	89.34
PRK06223	307	malate dehydrogenase; Reviewed	89.33
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	89.29
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	89.27
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	89.16
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	89.1
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.89
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.73
PRK07417	279	arogenate dehydrogenase; Reviewed	88.67
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	88.65
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	88.5
PRK10669	558	putative cation:proton antiport protein; Provision	88.43
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	88.37
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	88.32
PRK08306	296	dipicolinate synthase subunit A; Reviewed	88.31
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	88.26
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	88.15
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	88.12
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	88.09
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	88.05
PRK09496	453	trkA potassium transporter peripheral membrane com	87.93
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	87.71
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	87.68
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	87.46
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	87.44
PRK08328	231	hypothetical protein; Provisional	87.42
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	87.35
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.28
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	87.26
PRK08223	287	hypothetical protein; Validated	87.11
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	87.06
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	86.98
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	86.91
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	86.88
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	86.84
PLN02353	473	probable UDP-glucose 6-dehydrogenase	86.84
PLN02695	370	GDP-D-mannose-3',5'-epimerase	86.66
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	86.6
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	86.4
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	86.17
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	85.93
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	85.93
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	85.89
PTZ00117	319	malate dehydrogenase; Provisional	85.87
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	85.79
PRK03659	601	glutathione-regulated potassium-efflux system prot	85.76
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	85.72
PLN02494	477	adenosylhomocysteinase	85.68
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	85.5
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	85.38
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.24
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	85.06
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	84.95
PRK11730	715	fadB multifunctional fatty acid oxidation complex	84.93
KOG2755	334	consensus Oxidoreductase [General function predict	84.84
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	84.64
PRK09496	453	trkA potassium transporter peripheral membrane com	84.5
PRK12548	289	shikimate 5-dehydrogenase; Provisional	84.49
PLN02976	1713	amine oxidase	84.49
PRK03562	621	glutathione-regulated potassium-efflux system prot	84.39
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	84.34
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	84.23
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.19
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	84.11
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	84.08
PRK05562	223	precorrin-2 dehydrogenase; Provisional	84.06
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	84.0

>PRK06126 hypothetical protein; Provisional

Probab=100.00  E-value=5.4e-53  Score=464.14  Aligned_cols=365  Identities=32%  Similarity=0.514  Sum_probs=289.1

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccce
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~  118 (572)
                      |++..+||+||||||+||++|+.|+++|++|+||||++.+...++++.+++++|++|+++ |+.+++.+.+.+.......
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~l-Gl~~~l~~~g~~~~~~~~~   81 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRL-GIADEVRSAGLPVDYPTDI   81 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhc-ChHHHHHhhcCCccccCCc
Confidence            446678999999999999999999999999999999999999999999999999999999 9999999887765444444


Q ss_pred             eeeeCCCCCeeeeecCCCccc-cc-------cccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccce
Q 008258          119 IYCTSVTGPILGSVDHMQPQD-FE-------KVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE  190 (572)
Q Consensus       119 ~~~~~~~G~~~~~~~~~~~~~-~~-------~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (572)
                      .++.+..|+.+.+++...... ..       ...+|.....++|..|+++|++.+.+.+                  +++
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~------------------~v~  143 (545)
T PRK06126         82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQP------------------GVT  143 (545)
T ss_pred             eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCC------------------Cce
Confidence            555666787776654321110 00       0123445577999999999999987642                  249


Q ss_pred             EEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCcccccc
Q 008258          191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL  270 (572)
Q Consensus       191 i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~  270 (572)
                      +++++++++++++++++++++...++|  +++++++|+||||||++|.||+++|+.+.|...++..+.+.+...++....
T Consensus       144 i~~~~~v~~i~~~~~~v~v~~~~~~~g--~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~  221 (545)
T PRK06126        144 LRYGHRLTDFEQDADGVTATVEDLDGG--ESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALV  221 (545)
T ss_pred             EEeccEEEEEEECCCeEEEEEEECCCC--cEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHh
Confidence            999999999999999998888743344  345799999999999999999999999998887777777766654443332


Q ss_pred             ccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCcccccee
Q 008258          271 LNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEV  350 (572)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~  350 (572)
                       ...+...+++++|+..+++...+. ...|.+. .+.++. ....++++.+.+.+++.++. +...++....+|.+...+
T Consensus       222 -~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~w~~~~~~  296 (545)
T PRK06126        222 -GHDPAWMYWLFNPDRRGVLVAIDG-RDEWLFH-QLRGGE-DEFTIDDVDARAFVRRGVGE-DIDYEVLSVVPWTGRRLV  296 (545)
T ss_pred             -cCCCceEEEEECCCccEEEEEECC-CCeEEEE-EecCCC-CCCCCCHHHHHHHHHHhcCC-CCCeEEEeecccchhhee
Confidence             234556677778876666655443 3456554 222222 22356777888899998884 446677788899988999


Q ss_pred             cccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (572)
Q Consensus       351 a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~  430 (572)
                      +++|+  +|||+|+|||||.|+|++|||||+||+||+||||+|+.++++.+.+.+|++|++||+|+++.+++.+..+...
T Consensus       297 a~~~~--~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~  374 (545)
T PRK06126        297 ADSYR--RGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPIAARNTDYARRNADA  374 (545)
T ss_pred             hhhhc--cCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHH
Confidence            99997  6999999999999999999999999999999999999999888889999999999999999999998877654


Q ss_pred             h
Q 008258          431 A  431 (572)
Q Consensus       431 ~  431 (572)
                      +
T Consensus       375 ~  375 (545)
T PRK06126        375 L  375 (545)
T ss_pred             h
Confidence            3

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=100.00  E-value=3.2e-48  Score=428.75  Aligned_cols=444  Identities=23%  Similarity=0.270  Sum_probs=289.3

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      ..++||+||||||+||++|+.|+++ |++|+||||++.+...++|.+|+++++|+|+++ |+++++.+.+.+.....  .
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~l-Gl~d~l~~~g~~~~~~~--~  106 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAF-GFAERILKEAYWINETA--F  106 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhc-cchHHHHhhcccccceE--E
Confidence            4478999999999999999999995 999999999999888899999999999999999 99999988766543221  1


Q ss_pred             eeeCCC-CCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEE
Q 008258          120 YCTSVT-GPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (572)
Q Consensus       120 ~~~~~~-G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~  198 (572)
                      |..+.. +..+.+.....  +.....++.....++|..++++|++.+.+.|.                 +++++++++++
T Consensus       107 ~~~~~~~~~~i~r~~~~~--~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~-----------------~v~v~~g~~v~  167 (634)
T PRK08294        107 WKPDPADPSTIVRTGRVQ--DTEDGLSEFPHVIVNQARVHDYFLDVMRNSPT-----------------RLEPDYGREFV  167 (634)
T ss_pred             EcCCCccccceecccccc--ccCCCCCCCccEeeCHHHHHHHHHHHHHhcCC-----------------ceEEEeCcEEE
Confidence            211111 11121111110  11111233445678999999999999987663                 23788999999


Q ss_pred             EEeeeC---CeEEEEEEeccC-CceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEec-CccccccccC
Q 008258          199 SVSATD---QCINVIASFLKE-GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDYLLNE  273 (572)
Q Consensus       199 ~v~~~~---~~v~v~~~~~~~-g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~  273 (572)
                      ++++++   ++|+|++...++ .++++++++|||||||||++|.||+++|+++.|......+..+.... .++.     .
T Consensus       168 ~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p-----~  242 (634)
T PRK08294        168 DLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFP-----D  242 (634)
T ss_pred             EEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCC-----C
Confidence            998765   358888874321 02234589999999999999999999999999877665444333221 1111     1


Q ss_pred             CCceEEEEE-ecCceEEEEEecCCCCe-E--EEEeecCCCC--CCCCCCCHHHHHHHHHHHhCCCCCce-eEEEecCccc
Q 008258          274 RPGMLFFIF-NTEAIGVLVAHDLKEGE-F--ILQVPFYPPQ--QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVM  346 (572)
Q Consensus       274 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~-~i~~~~~w~~  346 (572)
                      . .....+. .+....++++.  ..+. +  ++.++..++.  ......+.+.+.+.++++++.....+ ++.....|.+
T Consensus       243 ~-~~~~~~~~~~~g~~~~~P~--~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~i  319 (634)
T PRK08294        243 I-RLKCAIQSASEGSILLIPR--EGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYEV  319 (634)
T ss_pred             c-ceEEEEecCCCceEEEEEC--CCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEecccc
Confidence            0 1111122 23333333333  2232 2  2222111111  12245678888888888776422222 2233334566


Q ss_pred             cceecccccc--------cCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHH
Q 008258          347 HAEVAEKFLC--------CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE  418 (572)
Q Consensus       347 ~~~~a~~~~~--------~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~  418 (572)
                      .++++++|..        ..|||||+|||||.|+|.+|||||+||+||+||+|||+.++++.+.+++|++|+.||+|+++
T Consensus       320 ~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a~  399 (634)
T PRK08294        320 GQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQ  399 (634)
T ss_pred             cceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            7888888831        25999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhcccc--------------------cccCCCccchhhhH------HHh--hcccCCCCcHHHH-----
Q 008258          419 FNTALSVQNFRAAMEVP--------------------SALGLDPTIANSVH------QLI--NRVAGSVLPSVLQ-----  465 (572)
Q Consensus       419 ~~~~~s~~~~~~~~~~~--------------------~~~g~~~~~~~~~~------~~~--~~~~~~~~~~~~~-----  465 (572)
                      .+++.+....+.+..-+                    ...|+...|.....      +.+  .-..|.++|+...     
T Consensus       400 ~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~sG~~~~Y~~s~l~~~~~~~~~~~~~~~G~r~~~~~v~~~~d  479 (634)
T PRK08294        400 ELIDFDREWSTMMAAPPKEGGGVDPAELQDYFVKHGRFTAGTATHYAPSLLTGEATHQDLATGFPIGKRFHSAPVIRLAD  479 (634)
T ss_pred             HHHHHHHHHHHHhccCCccccccCHHHHHHHHHHhhhhhcccCcccCCccccCCCCchhhccCCCCceeCCCCceeeccC
Confidence            98888765554442211                    11122222211100      000  0123444444221     


Q ss_pred             ---HHHHhhhhhhhhhHhhhhhccCCCcchHHHHHHHHHHHH-cCCccccccC
Q 008258          466 ---KALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFE-EGKSLQLQFP  514 (572)
Q Consensus       466 ---~~~~~~~~~~g~~~~~~~~~~~~~p~~~~r~~~~~~~~~-~~~~~~~~f~  514 (572)
                         ..+.+.+.+.|++.+..|..+...+....+.+++.+.|+ ...++...|+
T Consensus       480 ~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~  532 (634)
T PRK08294        480 AKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFT  532 (634)
T ss_pred             CCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcC
Confidence               233445666788777655544555677788999999994 3344444554

>PRK06184 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-47  Score=417.48  Aligned_cols=346  Identities=28%  Similarity=0.410  Sum_probs=253.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      ++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+.+.+......  +  
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~~--~--   77 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDL-GVLDRVVAAGGLYPPMRI--Y--   77 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHc-CcHHHHHhcCccccceeE--E--
Confidence            58999999999999999999999999999999999988899999999999999999 999999887755433221  1  


Q ss_pred             CCCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                      ...+. +.......... .....++. ...++|..|+++|.+.+.+.|+                   ++++++++++++
T Consensus        78 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~i~  136 (502)
T PRK06184         78 RDDGS-VAESDMFAHLE-PTPDEPYPLPLMVPQWRTERILRERLAELGH-------------------RVEFGCELVGFE  136 (502)
T ss_pred             eCCce-EEEeecccccc-CCCCCCCCcceecCHHHHHHHHHHHHHHCCC-------------------EEEeCcEEEEEE
Confidence            11222 22111110000 00011221 3568999999999999988776                   899999999999


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcc-eEEEEEEecCccccccccCCCceEEE
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ-KLVSVHFLSKDLGDYLLNERPGMLFF  280 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (572)
                      +++++|++++...++    .++++||+||||||++|.||+++|+.+.|..... .++........       ..+...+.
T Consensus       137 ~~~~~v~v~~~~~~~----~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~  205 (502)
T PRK06184        137 QDADGVTARVAGPAG----EETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG-------LDRDAWHQ  205 (502)
T ss_pred             EcCCcEEEEEEeCCC----eEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec-------CCCcceEE
Confidence            999999888763222    2379999999999999999999999998877654 44333322111       11122222


Q ss_pred             EEecC-ceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcee-EEEecCccccceecccccccC
Q 008258          281 IFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDID-VIDIKPWVMHAEVAEKFLCCY  358 (572)
Q Consensus       281 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-i~~~~~w~~~~~~a~~~~~~~  358 (572)
                      +..+. ....+++.+ ....|.+.++...  ......+++.+.++++...+.....++ +.....|.+..+++++|.  +
T Consensus       206 ~~~~~~~~~~~~p~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~  280 (502)
T PRK06184        206 WPDGDMGMIALCPLP-GTDLFQIQAPLPP--GGEPDLSADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYR--V  280 (502)
T ss_pred             ccCCCCcEEEEEEcc-CCCeEEEEEEcCC--CccCCCCHHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhc--C
Confidence            22332 222223322 1234555444322  223456788888889888775443332 333556778888899997  6


Q ss_pred             CcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       359 grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                      |||||+|||||.|+|++|||||+||+||+||+|||+.++++ +.+.+|++|++||+|+++.+++.+...++..
T Consensus       281 gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~  352 (502)
T PRK06184        281 GRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG-APEALLDTYEEERRPVAAAVLGLSTELLDAI  352 (502)
T ss_pred             CcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998 7889999999999999999998888766543

>PRK07190 hypothetical protein; Provisional

Probab=100.00  E-value=6.3e-47  Score=407.32  Aligned_cols=342  Identities=24%  Similarity=0.336  Sum_probs=247.3

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      .+..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++|+|+.+ |+++++...+.+....  ..
T Consensus         2 ~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~l-Gl~~~l~~~~~~~~~~--~~   78 (487)
T PRK07190          2 STQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELV-DLFDELYPLGKPCNTS--SV   78 (487)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhc-ChHHHHHhhCccceeE--EE
Confidence            35568999999999999999999999999999999998888899999999999999999 9999998766554322  11


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                      |   ..|..+........ .... ........++|..++++|.+++.+.|+                   +++++++|++
T Consensus        79 ~---~~g~~i~~~~~~~~-~~~~-~~~~~~~~~~q~~le~~L~~~~~~~Gv-------------------~v~~~~~v~~  134 (487)
T PRK07190         79 W---ANGKFISRQSSWWE-ELEG-CLHKHFLMLGQSYVEKLLDDKLKEAGA-------------------AVKRNTSVVN  134 (487)
T ss_pred             e---cCCceEeeccccCc-cCCc-CCCCceEecCHHHHHHHHHHHHHHCCC-------------------EEEeCCEEEE
Confidence            2   12333221111000 0000 001123568999999999999988887                   8999999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEec-CccccccccCCCceE
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDYLLNERPGML  278 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~  278 (572)
                      ++++++++++++.   +|.    +++|+|||||||++|.||+++|+++.|......+..+.... .++     ...+...
T Consensus       135 l~~~~~~v~v~~~---~g~----~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~-----~~~~~~~  202 (487)
T PRK07190        135 IELNQAGCLTTLS---NGE----RIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDF-----PKVPEII  202 (487)
T ss_pred             EEEcCCeeEEEEC---CCc----EEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCC-----CCCcceE
Confidence            9999999887764   442    78999999999999999999999998866443333332211 111     1111222


Q ss_pred             EEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhC-CCCCceeEEEecCccccceeccccccc
Q 008258          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG-WELSDIDVIDIKPWVMHAEVAEKFLCC  357 (572)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~~~~w~~~~~~a~~~~~~  357 (572)
                      . +..+....++++..  .+...+.+..     ...+++.+.+.+.+++.+. ......++...+.|++..+++++|+. 
T Consensus       203 ~-~~~~~g~~~~~p~~--~~~~r~~~~~-----~~~~~t~~~~~~~l~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~-  273 (487)
T PRK07190        203 V-FQAETSDVAWIPRE--GEIDRFYVRM-----DTKDFTLEQAIAKINHAMQPHRLGFKEIVWFSQFSVKESVAEHFFI-  273 (487)
T ss_pred             E-EEcCCCCEEEEECC--CCEEEEEEEc-----CCCCCCHHHHHHHHHHhcCCCCCceEEEEEEEEeeeCcEehhhcCc-
Confidence            2 22333333333332  2222222211     1245677778887877553 32222234455678889999999962 


Q ss_pred             CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      +|||||+|||||.|+|.+|||||+||+||+||+|||+.+++|.+.+.+|++|+.||+|+++.+...+....+
T Consensus       274 ~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~  345 (487)
T PRK07190        274 QDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPVAQGVIETSGELVR  345 (487)
T ss_pred             CCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            599999999999999999999999999999999999999999999999999999999999998887765544

>PRK08244 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-46  Score=406.65  Aligned_cols=337  Identities=26%  Similarity=0.385  Sum_probs=246.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      ++||+||||||+||++|+.|+++|++|+||||++.+...++++.++++++++|+++ |+.+++.+.+.+...+.   +. 
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~---~~-   76 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMR-GLLERFLEKGRKLPSGH---FA-   76 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhc-CcHHHHHhhcccccceE---Ee-
Confidence            47999999999999999999999999999999999888899999999999999999 99999988775553222   11 


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                      ...+.    .+. .  .... ..+. ...++|..++++|.+.+.+.|+                   +++++++++++++
T Consensus        77 ~~~~~----~~~-~--~~~~-~~~~-~~~i~q~~le~~L~~~~~~~gv-------------------~v~~~~~v~~i~~  128 (493)
T PRK08244         77 GLDTR----LDF-S--ALDT-SSNY-TLFLPQAETEKVLEEHARSLGV-------------------EIFRGAEVLAVRQ  128 (493)
T ss_pred             ccccc----CCc-c--cCCC-CCCc-EEEecHHHHHHHHHHHHHHcCC-------------------eEEeCCEEEEEEE
Confidence            11111    110 0  0000 1121 3568999999999999988776                   8999999999999


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEE
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (572)
                      +++++++++... +|   +++++||+||||||++|.||+++|+++.|.......+...+...       ...+...+.++
T Consensus       129 ~~~~v~v~~~~~-~g---~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~  197 (493)
T PRK08244        129 DGDGVEVVVRGP-DG---LRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLK-------DPPPSSVLSLC  197 (493)
T ss_pred             cCCeEEEEEEeC-Cc---cEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEec-------CCCCcceeEEE
Confidence            999988887632 23   24789999999999999999999998887664443332222211       11122233445


Q ss_pred             ecCceEEEEEecCCCCeEEEEeecC--CCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCCc
Q 008258          283 NTEAIGVLVAHDLKEGEFILQVPFY--PPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ  360 (572)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~gr  360 (572)
                      .++...++++.+  .+.+.+.+...  .+.......+.+.+.+.+.+..+......+......|....+++++|+  +||
T Consensus       198 ~~~g~~~~~P~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~gR  273 (493)
T PRK08244        198 TREGGVMIVPLS--GGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYR--SGR  273 (493)
T ss_pred             eCCceEEEEECC--CCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhc--cCc
Confidence            666544444443  34444333211  111122345677778888887765432222233345667778889997  699


Q ss_pred             EEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHH
Q 008258          361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN  427 (572)
Q Consensus       361 V~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~  427 (572)
                      |+|+|||||.|+|++|||||+||+||+||+|||+.++++.+.+.+|++|++||+|+++.++..+...
T Consensus       274 v~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~  340 (493)
T PRK08244        274 IFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLRNTEVQ  340 (493)
T ss_pred             EEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999999999999988889999999999999999887765443

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=100.00  E-value=7.2e-46  Score=407.45  Aligned_cols=345  Identities=23%  Similarity=0.389  Sum_probs=249.7

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      .++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+.+.+...+..  +.
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~~--~~   98 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRL-GCGERMVDKGVSWNVGKV--FL   98 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHc-CCcHHHHhhCceeeceeE--Ee
Confidence            568999999999999999999999999999999998888899999999999999999 999999887654322211  11


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                      .   +..+...+......    ........++|..|+++|.+.+.+.+                  ++++++++++++++
T Consensus        99 ~---~~~~~~~~~~~~~~----~~~~~~~~~~q~~le~~L~~~~~~~~------------------~v~v~~~~~v~~i~  153 (547)
T PRK08132         99 R---DEEVYRFDLLPEPG----HRRPAFINLQQYYVEGYLVERAQALP------------------NIDLRWKNKVTGLE  153 (547)
T ss_pred             C---CCeEEEecCCCCCC----CCCCceEecCHHHHHHHHHHHHHhCC------------------CcEEEeCCEEEEEE
Confidence            1   12222222111000    00112456899999999999987753                  24899999999999


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEE
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI  281 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  281 (572)
                      ++++++++++... ++   +++++||+||||||++|.||+.+|+++.|......++.+......       ..+...+++
T Consensus       154 ~~~~~v~v~~~~~-~g---~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~-------~~~~~~~~~  222 (547)
T PRK08132        154 QHDDGVTLTVETP-DG---PYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKA-------DFPTERWFW  222 (547)
T ss_pred             EcCCEEEEEEECC-CC---cEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecC-------CCCCeeeEE
Confidence            9999988887622 22   246899999999999999999999998887654444443322110       011111222


Q ss_pred             Ee----cCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceeccccccc
Q 008258          282 FN----TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC  357 (572)
Q Consensus       282 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~  357 (572)
                      +.    ++.. +++. ....+.|.+..............+++.+.+.++++++.. .++++.....|.++.+++++|+  
T Consensus       223 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~--  297 (547)
T PRK08132        223 FDPPFHPGQS-VLLH-RQPDNVWRIDFQLGWDADPEAEKKPENVIPRVRALLGED-VPFELEWVSVYTFQCRRMDRFR--  297 (547)
T ss_pred             EeccCCCCcE-EEEE-eCCCCeEEEEEecCCCCCchhhcCHHHHHHHHHHHcCCC-CCeeEEEEEeeeeeeeeecccc--
Confidence            22    2222 2222 222344544332211111112345667778888888743 4455666667888889999997  


Q ss_pred             CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (572)
Q Consensus       358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~  430 (572)
                      +|||+|+|||||.|+|++|||||+||+||+||+|||+.+++|.+.+.+|++|++||+|+++.+++.+......
T Consensus       298 ~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~  370 (547)
T PRK08132        298 HGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRSTDF  370 (547)
T ss_pred             cccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6999999999999999999999999999999999999999999899999999999999999988877765543

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=100.00  E-value=5.6e-46  Score=407.29  Aligned_cols=349  Identities=28%  Similarity=0.416  Sum_probs=257.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +..+||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+.+.+...+   .+
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~---~~   83 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAI-GLADEVLPHTTPNHGM---RF   83 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHc-CChhHHHhhcccCCce---EE
Confidence            4458999999999999999999999999999999999888899999999999999999 9999998876554322   22


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                      . +..|+.+..++......+    .......++|..++++|.+.+.+. |+                   ++++++++++
T Consensus        84 ~-~~~g~~~~~~~~~~~~~~----g~~~~~~~~q~~le~~L~~~~~~~~gv-------------------~v~~g~~v~~  139 (538)
T PRK06183         84 L-DAKGRCLAEIARPSTGEF----GWPRRNAFHQPLLEAVLRAGLARFPHV-------------------RVRFGHEVTA  139 (538)
T ss_pred             E-cCCCCEEEEEcCCCCCCC----CCChhccCChHHHHHHHHHHHHhCCCc-------------------EEEcCCEEEE
Confidence            2 245655544432110010    011235688999999999998775 44                   9999999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (572)
                      +++++++|++++... +|  ++++++|||||||||++|.||+.+|+.+.+......++.+.+.....     .......+
T Consensus       140 i~~~~~~v~v~~~~~-~G--~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  211 (538)
T PRK06183        140 LTQDDDGVTVTLTDA-DG--QRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIAND-----PLGGPHTY  211 (538)
T ss_pred             EEEcCCeEEEEEEcC-CC--CEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccC-----ccCCCceE
Confidence            999999998888622 33  34589999999999999999999999888776665555444321111     11122234


Q ss_pred             EEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCC-CHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccC
Q 008258          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF-SPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY  358 (572)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~  358 (572)
                      ++++|+...++++.+  .+.+.+.+...+.. ..+++ +++.+.+++..+. ..+...++.....|.+...++++|+  +
T Consensus       212 ~~~~~~~~~~~~p~~--~~~~r~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~--~  285 (538)
T PRK06183        212 QYCDPARPYTSVRLP--HGRRRWEFMLLPGE-TEEQLASPENVWRLLAPWG-PTPDDAELIRHAVYTFHARVADRWR--S  285 (538)
T ss_pred             EEECCCCCEEEEEcC--CCeEEEEEEeCCCC-ChhhcCCHHHHHHHHHhhC-CCCcceEEEEEEeeeEccEEhhhhc--c
Confidence            455666544444433  23333332222222 22223 4566677776552 2334456666667778888899997  6


Q ss_pred             CcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       359 grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                      |||+|+|||||.|+|++|||||+||+||+||+|||+.++++.+.+.+|++|++||+|++..+++.+....+.+
T Consensus       286 gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~  358 (538)
T PRK06183        286 GRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVI  358 (538)
T ss_pred             CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999999999999999988888899999999999999999998887655443

>PRK06834 hypothetical protein; Provisional

Probab=100.00  E-value=6.6e-45  Score=392.12  Aligned_cols=331  Identities=25%  Similarity=0.359  Sum_probs=240.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~-~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      ++||+||||||+||++|+.|+++|++|+||||.+.+. ..+++..++++++++|+++ |+++++.+.+.+.... .+   
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~l-Gl~~~l~~~~~~~~~~-~~---   77 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQR-GIADRFLAQGQVAQVT-GF---   77 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHc-CcHHHHHhcCCccccc-ee---
Confidence            4899999999999999999999999999999998765 4568999999999999999 9999998765443210 00   


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                         ..   ...+..   ++.. ..+. ...++|..++++|.+.+.+.|+                   ++++++++++++
T Consensus        78 ---~~---~~~~~~---~~~~-~~~~-~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~v~  127 (488)
T PRK06834         78 ---AA---TRLDIS---DFPT-RHNY-GLALWQNHIERILAEWVGELGV-------------------PIYRGREVTGFA  127 (488)
T ss_pred             ---ee---Eecccc---cCCC-CCCc-cccccHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEE
Confidence               00   011100   0000 0011 2467899999999999988876                   899999999999


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEE
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI  281 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  281 (572)
                      ++++++++++.   +|.    +++|||||+|||++|.||+++|+.+.|....+.++...+...+.        +. ....
T Consensus       128 ~~~~~v~v~~~---~g~----~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~--------~~-~~~~  191 (488)
T PRK06834        128 QDDTGVDVELS---DGR----TLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEE--------PE-WGVH  191 (488)
T ss_pred             EcCCeEEEEEC---CCC----EEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCC--------CC-ccee
Confidence            99999888764   443    68999999999999999999999999887655555444332110        10 1111


Q ss_pred             EecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCCcE
Q 008258          282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQI  361 (572)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~grV  361 (572)
                      +.+.....+.... ..+.+.+.+...++ ......+.+.+.+.+++.++.............|....+++++|+  +|||
T Consensus       192 ~~~~g~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~r~a~~~~--~gRV  267 (488)
T PRK06834        192 RDALGIHAFGRLE-DEGPVRVMVTEKQV-GATGEPTLDDLREALIAVYGTDYGIHSPTWISRFTDMARQAASYR--DGRV  267 (488)
T ss_pred             eCCCceEEEeccC-CCCeEEEEEecCCC-CCCCCCCHHHHHHHHHHhhCCCCccccceeEEeccccceeccccc--CCcE
Confidence            2222211111111 12344333322111 222345667777777777765443333334456777788999998  6999


Q ss_pred             EEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258          362 ILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF  428 (572)
Q Consensus       362 ~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~  428 (572)
                      +|+|||||.|+|++|||||+||+||+||+|||+.++++.+.+.+|++|++||+|+++.++..+....
T Consensus       268 ~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~  334 (488)
T PRK06834        268 LLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLRNTMAQV  334 (488)
T ss_pred             EEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998999999999999999999888775554

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=100.00  E-value=1.3e-45  Score=383.72  Aligned_cols=350  Identities=27%  Similarity=0.440  Sum_probs=249.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      ++||+||||||+||++|+.|+|+|++|+||||++.+...++++.++++++++|+.+ |+++.+...+.+...+....+..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~~~~~~   79 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRL-GLLDEILARGSPHEVMRIFFYDG   79 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHT-TEHHHHHHHSEEECEEEEEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccc-cchhhhhhhcccccceeeEeecc
Confidence            47999999999999999999999999999999999999999999999999999999 99999998775544333333322


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                       ..+.............+.....+.....++|..|++.|.+.+.+.|+                   +++++++++++++
T Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~~~~  139 (356)
T PF01494_consen   80 -ISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV-------------------DIRFGTRVVSIEQ  139 (356)
T ss_dssp             -TTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE-------------------EEEESEEEEEEEE
T ss_pred             -cCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh-------------------hheeeeecccccc
Confidence             11111111110011111111223344678899999999999999886                   9999999999999


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCc--ceEEEEEEecCccccccccCCCceEEE
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDL--QKLVSVHFLSKDLGDYLLNERPGMLFF  280 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (572)
                      +++++++++.+..+|  +.++++||+||||||++|.||++++....+....  ..++.+.+.. .+..+.   .+  .++
T Consensus       140 d~~~~~~~~~~~~~g--~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~--~~~  211 (356)
T PF01494_consen  140 DDDGVTVVVRDGEDG--EEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDS-DLSDPW---ED--HCF  211 (356)
T ss_dssp             ETTEEEEEEEETCTC--EEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEEC-HSHTTT---SC--EEE
T ss_pred             cccccccccccccCC--ceeEEEEeeeecccCcccchhhhccccccCcccccccccccccccc-cccccc---cc--ccc
Confidence            999999888854444  4568999999999999999999998775544322  2333444333 222221   11  445


Q ss_pred             EEecCceE-EEEEecC-CCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceeccccccc
Q 008258          281 IFNTEAIG-VLVAHDL-KEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC  357 (572)
Q Consensus       281 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~  357 (572)
                      +..+...+ .+.+... ....+.+.+++..+. ........+.+.+.+...++......++.....|++...++++|.  
T Consensus       212 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  289 (356)
T PF01494_consen  212 IYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQRVADRWV--  289 (356)
T ss_dssp             EEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEEEEESSSE--
T ss_pred             cccccccceeEeeccCCccceEEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            55555443 3444433 223455666654432 222333445566666666655444456667778888888888887  


Q ss_pred             CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHH
Q 008258          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL  423 (572)
Q Consensus       358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~  423 (572)
                      +|||+|+|||||.|+|++|||+|+||+||.+|+++|+.+.+|.+.+++|+.|+++|+++++.+++.
T Consensus       290 ~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~~~~~~~~  355 (356)
T PF01494_consen  290 KGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPRARKAVQF  355 (356)
T ss_dssp             ETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999999999999999999998888999999999999999987764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=7e-43  Score=367.72  Aligned_cols=340  Identities=24%  Similarity=0.338  Sum_probs=250.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~-~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      .+||+||||||+||++|++|++.|++|+||||. +.....+++..|+++++++|+++ |+.+++...+.+......  . 
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~i~~~~~~~~~~~~--~-   77 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERL-GLWDRLEALGVPPLHVMV--V-   77 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHc-CChhhhhhccCCceeeEE--E-
Confidence            479999999999999999999999999999998 46667789999999999999999 997888876654322111  1 


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                       +..+.....++...   .   ..+...+.++|..|...|.+.+.+.+                  +++++++++|+.++
T Consensus        78 -~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~l~~~L~~~~~~~~------------------~v~~~~~~~v~~~~  132 (387)
T COG0654          78 -DDGGRRLLIFDAAE---L---GRGALGYVVPRSDLLNALLEAARALP------------------NVTLRFGAEVEAVE  132 (387)
T ss_pred             -ecCCceeEEecccc---c---CCCcceEEeEhHHHHHHHHHHHhhCC------------------CcEEEcCceEEEEE
Confidence             12222111222111   0   11333577999999999999998865                  24999999999999


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcC-CccccccCcceEEEEEEecCccccccccCCCceEEE
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG-IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg-~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (572)
                      ++++.+++++..  +|.    +++||+||||||.+|.||+.++ ....+..+.+.++......+       .+.+...+.
T Consensus       133 ~~~~~v~v~l~~--dG~----~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~-------~~~~~~~~~  199 (387)
T COG0654         133 QDGDGVTVTLSF--DGE----TLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPE-------EPHEGRAGE  199 (387)
T ss_pred             EcCCceEEEEcC--CCc----EEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecC-------CCCCCeEEE
Confidence            999999988863  443    7999999999999999999999 45555566666666655432       234455555


Q ss_pred             EEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCC--CCceeEE-EecCccccceeccccccc
Q 008258          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVI-DIKPWVMHAEVAEKFLCC  357 (572)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~-~~~~w~~~~~~a~~~~~~  357 (572)
                      .+.+.....+++........+|..+. ...+....++++...+.+.+.+++.  ...+... ....|++....+++|.  
T Consensus       200 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~--  276 (387)
T COG0654         200 RFTHAGPFALLPLPDNRSSVVWSLPP-GPAEDLQGLSDEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYR--  276 (387)
T ss_pred             EecCCCceEEEecCCCceeEEEECCh-hhHHHHhcCCHHHHHHHHHHhcCcccccceEEEccccccccccchhhhhee--
Confidence            66665533333333222333343331 2223445677777777788877776  3333333 2345677788899998  


Q ss_pred             CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHH
Q 008258          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN  427 (572)
Q Consensus       358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~  427 (572)
                      ++||+|+|||||.++|.+|||+|+||+||.+|+|+|+...++..++.+|+.|+++|++++..++..+...
T Consensus       277 ~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~  346 (387)
T COG0654         277 RGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRAL  346 (387)
T ss_pred             cCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999999988743338999999999999999988887633

>PRK08013 oxidoreductase; Provisional

Probab=100.00  E-value=8.6e-43  Score=368.94  Aligned_cols=340  Identities=18%  Similarity=0.199  Sum_probs=228.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------CCeeeeChhHHHHHHhhcchHHHHHhc-CCCcccc
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW  115 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~------~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~~~~  115 (572)
                      ++||+||||||+|+++|++|+++|++|+||||.+.+...      .++..++++++++|+++ |+++++.+. ..+...+
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l-Gl~~~~~~~~~~~~~~~   81 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL-GVWQDILARRASCYHGM   81 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc-CCchhhhhhcCccccEE
Confidence            489999999999999999999999999999999875432      36778999999999999 999998764 3444322


Q ss_pred             cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (572)
Q Consensus       116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~  195 (572)
                      .  .+..+..++..  .+   ...+   ..+...+.++|..|+++|.+.+.+.+                  ++++++++
T Consensus        82 ~--~~~~~~~~~~~--~~---~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~------------------~v~i~~~~  133 (400)
T PRK08013         82 E--VWDKDSFGRIA--FD---DQSM---GYSHLGHIIENSVIHYALWQKAQQSS------------------DITLLAPA  133 (400)
T ss_pred             E--EEeCCCCceEE--Ec---cccc---CCCccEEEEEhHHHHHHHHHHHhcCC------------------CcEEEcCC
Confidence            1  11111112211  11   0000   11222356889999999999987752                  23899999


Q ss_pred             EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCC
Q 008258          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (572)
Q Consensus       196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (572)
                      ++++++++++++++++.   +|.    +++||+||||||++|.||+++++++.+..+.+..+...+...       ...+
T Consensus       134 ~v~~i~~~~~~v~v~~~---~g~----~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~-------~~~~  199 (400)
T PRK08013        134 ELQQVAWGENEAFLTLK---DGS----MLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTE-------EPHD  199 (400)
T ss_pred             eeEEEEecCCeEEEEEc---CCC----EEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEecc-------CCCC
Confidence            99999999999888875   453    689999999999999999999998776654444443333221       1122


Q ss_pred             ceEEEEEecCceEEEEEecCCC-CeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCccccceeccc
Q 008258          276 GMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK  353 (572)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~~~~a~~  353 (572)
                      ...+..+.++....+++..... ..+++..+... .+.....+++.+.+.+...++......++.+ ...|++...++++
T Consensus       200 ~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~  278 (400)
T PRK08013        200 AVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEE-AQRMQQAPEEEFNRALAIAFDNRLGLCELESERQVFPLTGRYARQ  278 (400)
T ss_pred             CEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHH-HHHHHcCCHHHHHHHHHHHHhHhhCceEecCCccEEecceeeccc
Confidence            3334444444433333332211 12333332110 0111233444555555444332222333332 2245666678889


Q ss_pred             ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHh-cCCC--chhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIA--PASILNTYETERKPIAEFNTALSVQNF  428 (572)
Q Consensus       354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~-~g~~--~~~~L~~Y~~eR~~~a~~~~~~s~~~~  428 (572)
                      |.  +|||+|+|||||.++|++|||||+||+||.+|+|+|+.++ ++.+  ...+|++|+++|++++..++..+....
T Consensus       279 ~~--~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~  354 (400)
T PRK08013        279 FA--AHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFR  354 (400)
T ss_pred             cc--CCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            97  6999999999999999999999999999999999999876 3433  235899999999999987776554443

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=100.00  E-value=3.1e-41  Score=356.22  Aligned_cols=340  Identities=21%  Similarity=0.283  Sum_probs=226.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~--~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ++||+||||||+||++|+.|+++|++|+|+||++.+  ...+++..++++++++|+++ |+++++...+.+...+.   +
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~---~   77 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREA-GVGERMDREGLVHDGIE---L   77 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHc-CChHHHHhcCCccCcEE---E
Confidence            479999999999999999999999999999999864  33567888999999999999 99999988776653322   1


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                      ..  .|+ ...++..      ....+.....++|..+.+.|++.+.+.|+                   +++++++++++
T Consensus        78 ~~--~g~-~~~~~~~------~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv-------------------~v~~~~~v~~i  129 (392)
T PRK08243         78 RF--DGR-RHRIDLT------ELTGGRAVTVYGQTEVTRDLMAARLAAGG-------------------PIRFEASDVAL  129 (392)
T ss_pred             EE--CCE-EEEeccc------cccCCceEEEeCcHHHHHHHHHHHHhCCC-------------------eEEEeeeEEEE
Confidence            11  233 2222211      10112223456788999999888877776                   89999999999


Q ss_pred             ee-eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEe--cCccccccccCCCce
Q 008258          201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFL--SKDLGDYLLNERPGM  277 (572)
Q Consensus       201 ~~-~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~--~~~l~~~~~~~~~~~  277 (572)
                      ++ +++.+.|++.  ++|  ++.+++||+||||||++|.||++++.....  .+...+...+.  ..+.     ...+..
T Consensus       130 ~~~~~~~~~V~~~--~~G--~~~~i~ad~vVgADG~~S~vR~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~  198 (392)
T PRK08243        130 HDFDSDRPYVTYE--KDG--EEHRLDCDFIAGCDGFHGVSRASIPAGALR--TFERVYPFGWLGILAEA-----PPVSDE  198 (392)
T ss_pred             EecCCCceEEEEE--cCC--eEEEEEeCEEEECCCCCCchhhhcCcchhh--ceecccCceEEEEeCCC-----CCCCCc
Confidence            87 6677777764  244  345799999999999999999999754211  11111000000  0010     011111


Q ss_pred             EEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCC----CCceeEEEecCccccceeccc
Q 008258          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE----LSDIDVIDIKPWVMHAEVAEK  353 (572)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~~~~~w~~~~~~a~~  353 (572)
                      .++...+....++...+.....+++.++.   ......++++...+.+++.++..    .....+.....|++...++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (392)
T PRK08243        199 LIYANHERGFALCSMRSPTRSRYYLQCPL---DDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAEP  275 (392)
T ss_pred             eEEeeCCCceEEEecCCCCcEEEEEEecC---CCCcccCChhHHHHHHHHhcCcccccccccCccccccceeeeeceecc
Confidence            22222333333322222111233443332   12234455555555666555431    111122223345556667788


Q ss_pred             ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                      |.  +|||+|+|||||.++|++|||+|+||+||.+|||+|+.++++ ..+.+|++|+++|++++..++..+....+..
T Consensus       276 ~~--~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~-~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~  350 (392)
T PRK08243        276 MQ--YGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE-GDTALLDAYSATALRRVWKAERFSWWMTSML  350 (392)
T ss_pred             ce--eCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            86  599999999999999999999999999999999999998765 3578999999999999998888877665544

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=100.00  E-value=4.2e-41  Score=356.87  Aligned_cols=342  Identities=20%  Similarity=0.244  Sum_probs=229.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCCC----CCCCeeeeChhHHHHHHhhcchHHHHHhc-CCCcccc
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAFS----THPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW  115 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~-~~~~----~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~~~~  115 (572)
                      ..+||+||||||+||++|++|+++|++|+|+|++ +.+.    ..+++..++++++++|+++ |+++++.+. +.+...+
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~   81 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL-GAWQGIEARRAAPYIAM   81 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC-CchhhhhhhhCCcccEE
Confidence            3589999999999999999999999999999997 3221    2357889999999999999 999999864 4444322


Q ss_pred             cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (572)
Q Consensus       116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~  195 (572)
                      .  ++.....+.......     ..   ..+...+.+.+..|++.|++.+.+.+                  ++++++++
T Consensus        82 ~--~~~~~~~~~~~~~~~-----~~---~~~~~g~~~~~~~l~~~L~~~~~~~~------------------~v~v~~~~  133 (405)
T PRK08850         82 E--VWEQDSFARIEFDAE-----SM---AQPDLGHIVENRVIQLALLEQVQKQD------------------NVTLLMPA  133 (405)
T ss_pred             E--EEeCCCCceEEEecc-----cc---CCCccEEEEEHHHHHHHHHHHHhcCC------------------CeEEEcCC
Confidence            1  121111122111100     00   01111234677889999999886642                  24899999


Q ss_pred             EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCC
Q 008258          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (572)
Q Consensus       196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (572)
                      ++++++++++.+++++.   +|+    +++||+||||||++|.||++++++..+..+.+..+...+...       ....
T Consensus       134 ~v~~i~~~~~~~~v~~~---~g~----~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~-------~~~~  199 (405)
T PRK08850        134 RCQSIAVGESEAWLTLD---NGQ----ALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTV-------DPHN  199 (405)
T ss_pred             eeEEEEeeCCeEEEEEC---CCC----EEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEcc-------CCCC
Confidence            99999998888888775   553    689999999999999999999988766554333333333221       1223


Q ss_pred             ceEEEEEecCceEEEEEecCCCCeE--EEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCccccceecc
Q 008258          276 GMLFFIFNTEAIGVLVAHDLKEGEF--ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAE  352 (572)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~~~~a~  352 (572)
                      ...+.++.++....+++... .+.+  ++..+.... +.....+++.+.+.+.+.++.....+++.. ...|++....++
T Consensus       200 ~~~~~~~~~~g~~~~lp~~~-~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~  277 (405)
T PRK08850        200 SVARQIFTPQGPLAFLPMSE-PNMSSIVWSTEPLRA-EALLAMSDEQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYAR  277 (405)
T ss_pred             CEEEEEEcCCCceEEEECCC-CCeEEEEEECCHHHH-HHHHcCCHHHHHHHHHHHHhhhhCcEEEcccccEEecceeecc
Confidence            34455566655444443321 1223  333321100 111233444555555555443333333322 224556667788


Q ss_pred             cccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-CC--CchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       353 ~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g~--~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      +|.  ++||+|+|||||.++|..|||+|+||+||.+|+|+|+.+.+ +.  ..+.+|++|+++|++++..++..+....+
T Consensus       278 ~~~--~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~  355 (405)
T PRK08850        278 DFV--RERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRD  355 (405)
T ss_pred             ccc--cCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            887  69999999999999999999999999999999999998763 32  24689999999999999988887754443


Q ss_pred             H
Q 008258          430 A  430 (572)
Q Consensus       430 ~  430 (572)
                      .
T Consensus       356 ~  356 (405)
T PRK08850        356 L  356 (405)
T ss_pred             H
Confidence            3

>PRK07045 putative monooxygenase; Reviewed

Probab=100.00  E-value=1.5e-40  Score=350.74  Aligned_cols=346  Identities=20%  Similarity=0.235  Sum_probs=226.3

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCC-cccccce
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP-VDLWRKF  118 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~-~~~~~~~  118 (572)
                      ++..+||+||||||+||++|+.|++.|++|+|+||++.+...++++.++++++++|+++ |+++.+.+.+.. ...+.  
T Consensus         2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~l-Gl~~~~~~~~~~~~~~~~--   78 (388)
T PRK07045          2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAM-GLLDDVFAAGGLRRDAMR--   78 (388)
T ss_pred             CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHc-CCHHHHHhcccccccceE--
Confidence            45668999999999999999999999999999999999887778888999999999999 999998876543 22111  


Q ss_pred             eeeeCCCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (572)
Q Consensus       119 ~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v  197 (572)
                       .  ...|+.+...+....       .+.. .+.++|..|+++|++.+...+                  ++++++++++
T Consensus        79 -~--~~~g~~~~~~~~~~~-------~~~g~~~~i~r~~l~~~L~~~~~~~~------------------gv~i~~~~~v  130 (388)
T PRK07045         79 -L--YHDKELIASLDYRSA-------SALGYFILIPCEQLRRLLLAKLDGLP------------------NVRLRFETSI  130 (388)
T ss_pred             -E--ecCCcEEEEecCCcc-------ccCCceEEccHHHHHHHHHHHHhcCC------------------CeeEEeCCEE
Confidence             1  124555544332110       0111 245789999999999886532                  2489999999


Q ss_pred             EEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhh-cCCccccccCcceEEEEEEecCccccccccCCCc
Q 008258          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL-VGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG  276 (572)
Q Consensus       198 ~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~-lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~  276 (572)
                      ++++++++++.+.+.+. +|+    ++++|+||||||++|.||++ ++++..+...........+....       ..+.
T Consensus       131 ~~i~~~~~~~~~~v~~~-~g~----~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  198 (388)
T PRK07045        131 ERIERDADGTVTSVTLS-DGE----RVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTD-------SVRE  198 (388)
T ss_pred             EEEEECCCCcEEEEEeC-CCC----EEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccC-------Cccc
Confidence            99998877754444432 453    68999999999999999997 45543332222221211111110       0011


Q ss_pred             eEEEEEec-CceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCc-eeEE-Eec---Ccccccee
Q 008258          277 MLFFIFNT-EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-IDVI-DIK---PWVMHAEV  350 (572)
Q Consensus       277 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~-~~~---~w~~~~~~  350 (572)
                      ....++.+ ....++++.......+++.++.....+...+.+.+.+.+.+.+.+++.... ++.. ...   .+++....
T Consensus       199 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (388)
T PRK07045        199 CNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMN  278 (388)
T ss_pred             cceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecCccc
Confidence            11122333 223333333222222333333221111222344555666666555432211 1111 111   23445556


Q ss_pred             cccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC-CchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       351 a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~-~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      +++|.  .|||+|+|||||.++|++|||+|+||+||++|||+|+.++++. ..+.+|++|+++|+|++..++..+....+
T Consensus       279 ~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~  356 (388)
T PRK07045        279 LDRYH--KRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALAT  356 (388)
T ss_pred             ccccc--CCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhh
Confidence            67886  5999999999999999999999999999999999999876553 45789999999999999988877664443


Q ss_pred             H
Q 008258          430 A  430 (572)
Q Consensus       430 ~  430 (572)
                      .
T Consensus       357 ~  357 (388)
T PRK07045        357 T  357 (388)
T ss_pred             h
Confidence            3

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=9.6e-41  Score=350.18  Aligned_cols=330  Identities=17%  Similarity=0.219  Sum_probs=228.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF----STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~----~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      +||+||||||+|+++|++|++.|++|+|+|+.+..    ...+++..++++++++|+.+ |+++.+.+.+.+...+.   
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~---   77 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI-DIWEELEKFVAEMQDIY---   77 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC-CcHHHHHhhcCCCcEEE---
Confidence            68999999999999999999999999999997532    23478999999999999999 99999887665554322   


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                       ..+..|.....++..        ..+...+.++|..|++.|++.+.+.+.                  +++++++++++
T Consensus        78 -~~~~~g~~~~~~~~~--------~~~~~g~~v~r~~L~~~L~~~~~~~~~------------------v~~~~~~~v~~  130 (374)
T PRK06617         78 -VVDNKASEILDLRND--------ADAVLGYVVKNSDFKKILLSKITNNPL------------------ITLIDNNQYQE  130 (374)
T ss_pred             -EEECCCceEEEecCC--------CCCCcEEEEEHHHHHHHHHHHHhcCCC------------------cEEECCCeEEE
Confidence             112344433333211        011123678999999999999987652                  48899999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (572)
                      +.++++++++++.   ++     +++||+||||||++|.||+.++++..+..+ +..+.......       .......+
T Consensus       131 i~~~~~~v~v~~~---~~-----~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~-------~~~~~~~~  194 (374)
T PRK06617        131 VISHNDYSIIKFD---DK-----QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHE-------KPHENCAM  194 (374)
T ss_pred             EEEcCCeEEEEEc---CC-----EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEecc-------CCCCCEEE
Confidence            9999898887764   33     689999999999999999999876554443 44443332211       12233334


Q ss_pred             EEEecCceEEEEEecCCC-CeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCccccceecccccc
Q 008258          280 FIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFLC  356 (572)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~~~~a~~~~~  356 (572)
                      ..+.+.+...+++..... ..++|..+  +++ ......+++.+.+++....++....+.+.. ...|++....+++|. 
T Consensus       195 ~~~~~~g~~~~lPl~~~~~~~~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~-  271 (374)
T PRK06617        195 EHFLPLGPFALLPLKDQYASSVIWSTS--SDQAALIVNLPVEEVRFLTQRNAGNSLGKITIDSEISSFPLKARIANRYF-  271 (374)
T ss_pred             EEecCCCCEEEeECCCCCeEEEEEeCC--HHHHHHHHcCCHHHHHHHHHHhhchhcCceeeccceeEEEeeeeecccee-
Confidence            445454443334333211 12223222  111 111233445555555655554333343332 456777777888897 


Q ss_pred             cCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       357 ~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                       +|||+|+|||||.++|.+|||+|+||+||.+|++.|..       ..+|++|+++|+++...++..+....+.+
T Consensus       272 -~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~-------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f  338 (374)
T PRK06617        272 -HNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN-------NGTLQEYQKLRQEDNFIMYKLTDELNNIF  338 (374)
T ss_pred             -cCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC-------cchHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence             69999999999999999999999999999999998831       35899999999999998888776544433

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=100.00  E-value=8.8e-41  Score=357.20  Aligned_cols=343  Identities=22%  Similarity=0.275  Sum_probs=230.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCC------------CCCeeeeChhHHHHHHhhcchHHHHHh
Q 008258           44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFST------------HPQAHFINNRYALVFRKLDGLAEEIER  107 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~----~Gi~v~viEr~~~~~~------------~~~a~~l~~rt~e~l~~l~Gl~~~l~~  107 (572)
                      +||+||||||+|+++|+.|++    +|++|+||||++.+..            .+++..|+++++++|+.+ |+++++.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l-G~~~~l~~   79 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI-GAWDHIQS   79 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc-Cchhhhhh
Confidence            599999999999999999999    8999999999654432            357999999999999999 99999976


Q ss_pred             cC-CCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCccccccccc
Q 008258          108 SQ-PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLL  186 (572)
Q Consensus       108 ~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~  186 (572)
                      .. .+...+.  .+  +..+.....++...       ..+...+.++|..|++.|.+.+.+.+.                
T Consensus        80 ~~~~~~~~~~--~~--~~~~~~~~~~~~~~-------~~~~~~~~i~~~~l~~~L~~~~~~~~~----------------  132 (437)
T TIGR01989        80 DRIQPFGRMQ--VW--DGCSLALIRFDRDN-------GKEDMACIIENDNIQNSLYNRLQEYNG----------------  132 (437)
T ss_pred             hcCCceeeEE--Ee--cCCCCceEEeecCC-------CCCceEEEEEHHHHHHHHHHHHHhCCC----------------
Confidence            53 3433221  11  11222111111100       011123568899999999999877641                


Q ss_pred             ccceEEeccEEEEEee-------eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEE
Q 008258          187 QGREILMGHECVSVSA-------TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV  259 (572)
Q Consensus       187 ~~~~i~~g~~v~~v~~-------~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~  259 (572)
                      ++++++++++|+++++       +++++++++.   +|+    +++||+||||||++|.||+.+|+++.+..+.+..+..
T Consensus       133 ~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~---~g~----~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~  205 (437)
T TIGR01989       133 DNVKILNPARLISVTIPSKYPNDNSNWVHITLS---DGQ----VLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVA  205 (437)
T ss_pred             CCeEEecCCeeEEEEeccccccCCCCceEEEEc---CCC----EEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEE
Confidence            1248999999999975       2456776664   553    7999999999999999999999999888766655444


Q ss_pred             EEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhC---------
Q 008258          260 HFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG---------  330 (572)
Q Consensus       260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------  330 (572)
                      .+....      ...+...+..|.+++...+++.......+++..+.. ......+.+++.+.+.+.+.++         
T Consensus       206 ~v~~~~------~~~~~~~~~~f~~~g~~~~lPl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~  278 (437)
T TIGR01989       206 TLKLEE------ATENDVAWQRFLPTGPIALLPLPDNNSTLVWSTSPE-EALRLLSLPPEDFVDALNAAFDLGYSDHPYS  278 (437)
T ss_pred             EEEccc------CCCCCeEEEEECCCCCEEEeECCCCCEEEEEeCCHH-HHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence            332211      123344455566665444444432222344433210 0011123455555555544331         


Q ss_pred             ---------------CC----------CC-ceeEE--EecCccccceecccccccCCcEEEEecccccCCCCCCCCchhH
Q 008258          331 ---------------WE----------LS-DIDVI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG  382 (572)
Q Consensus       331 ---------------~~----------~~-~~~i~--~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~a  382 (572)
                                     +.          +. ...+.  ....|++....+++|.  .+||+|+|||||.++|.+|||||+|
T Consensus       279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~rv~l~GDAAH~~~P~~GqG~n~~  356 (437)
T TIGR01989       279 YLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYV--TKRVALVGDAAHRVHPLAGQGVNLG  356 (437)
T ss_pred             cccccccccccccccccccccccccccCchhheeecccceeEEecccchhhcc--CCCEEEEchhhcCCCCChhhhHHHH
Confidence                           10          00 01111  1134556666788887  6999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCC---chhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258          383 VQDAHNLAWKIASVLKDIA---PASILNTYETERKPIAEFNTALSVQNFRA  430 (572)
Q Consensus       383 i~DA~~La~~La~~~~g~~---~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~  430 (572)
                      |+||.+|+|+|+.+.++..   .+.+|++|+++|+++++.++..+....+.
T Consensus       357 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l  407 (437)
T TIGR01989       357 FGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLHKL  407 (437)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998875432   35799999999999999888877654443

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=2.2e-40  Score=352.80  Aligned_cols=348  Identities=21%  Similarity=0.245  Sum_probs=228.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccce
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~--~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~  118 (572)
                      ..++||+||||||+||++|++|+++|++|+||||++.+..  .++++.++++++++|+++ |+++++...+.+....   
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~---   91 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGI-GVWEKILPQIGKFRQI---   91 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHC-ChhhhhHhhcCCccEE---
Confidence            4468999999999999999999999999999999987643  477889999999999999 9999988766554321   


Q ss_pred             eeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEE
Q 008258          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (572)
Q Consensus       119 ~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~  198 (572)
                      .+ .+..+.....+...   +..  ..........| .|.+.|++.+.+.+                  +++++++++++
T Consensus        92 ~~-~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~-~l~~~L~~~~~~~~------------------~v~i~~~~~v~  146 (415)
T PRK07364         92 RL-SDADYPGVVKFQPT---DLG--TEALGYVGEHQ-VLLEALQEFLQSCP------------------NITWLCPAEVV  146 (415)
T ss_pred             EE-EeCCCCceeeeccc---cCC--CCccEEEEecH-HHHHHHHHHHhcCC------------------CcEEEcCCeeE
Confidence            11 12223222111110   000  00111222334 67788888887652                  24899999999


Q ss_pred             EEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceE
Q 008258          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (572)
Q Consensus       199 ~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (572)
                      +++++++++++++.  +++  .+.+++||+||||||++|.||+.+++...+..+++..+...+....       ......
T Consensus       147 ~v~~~~~~~~v~~~--~~~--~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  215 (415)
T PRK07364        147 SVEYQQDAATVTLE--IEG--KQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEA-------PHNDIA  215 (415)
T ss_pred             EEEecCCeeEEEEc--cCC--cceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccC-------CCCCEE
Confidence            99998888888775  222  2347999999999999999999999887777666655544433211       111112


Q ss_pred             EEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEE-EecCccccceeccccccc
Q 008258          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLCC  357 (572)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-~~~~w~~~~~~a~~~~~~  357 (572)
                      +..+.+.....+++.+.....+++..+... .......+.+...+.+.+.++.....++.. ....|++....+++|.  
T Consensus       216 ~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  292 (415)
T PRK07364        216 YERFWPSGPFAILPLPGNRCQIVWTAPHAQ-AKALLALPEAEFLAELQQRYGDQLGKLELLGDRFLFPVQLMQSDRYV--  292 (415)
T ss_pred             EEEecCCCCeEEeECCCCCEEEEEECCHHH-HHHHHCCCHHHHHHHHHHHhhhhhcCceecCCCceecchhhhhhhhc--
Confidence            212223333333333322222333222110 011123344455555555443322233322 2234556556677886  


Q ss_pred             CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-CCC--chhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIA--PASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g~~--~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                      +|||+|+|||||.++|++|||+|+||+||++|+|+|...++ +.+  ...+|+.|+++|++++..++..+....+.+
T Consensus       293 ~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~  369 (415)
T PRK07364        293 QHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLF  369 (415)
T ss_pred             CCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999998763 222  348999999999999988777766544433

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=1.8e-40  Score=349.37  Aligned_cols=336  Identities=18%  Similarity=0.250  Sum_probs=226.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--C----CCCeeeeChhHHHHHHhhcchHHHHHhc-CCCcccc
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--T----HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW  115 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~--~----~~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~~~~  115 (572)
                      .+||+||||||+||++|++|++.|++|+|||+.+...  .    ..++..++++++++|+++ |+++.+.+. ..+...+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~~~~~~~~~~~~~   81 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL-GAWSSIVAMRVCPYKRL   81 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC-CCchhhhHhhCCccceE
Confidence            3799999999999999999999999999999886321  1    225578999999999999 999998763 3343222


Q ss_pred             cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (572)
Q Consensus       116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~  195 (572)
                      .  .+.. ....  .....   .++.   .+...+.+.+..|...|++.+.+.+                  ++++++++
T Consensus        82 ~--~~~~-~~~~--~~~~~---~~~~---~~~~g~~i~~~~l~~~L~~~~~~~~------------------~i~i~~~~  132 (384)
T PRK08849         82 E--TWEH-PECR--TRFHS---DELN---LDQLGYIVENRLIQLGLWQQFAQYP------------------NLTLMCPE  132 (384)
T ss_pred             E--EEeC-CCce--EEecc---cccC---CCccEEEEEcHHHHHHHHHHHHhCC------------------CeEEECCC
Confidence            2  1111 1111  11110   0000   0111134556678888888876642                  24899999


Q ss_pred             EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCC
Q 008258          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (572)
Q Consensus       196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (572)
                      ++++++++++++++++.   +|.    +++||+||||||++|.||+++++...+..+.+..+.+.....       ...+
T Consensus       133 ~v~~~~~~~~~~~v~~~---~g~----~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~-------~~~~  198 (384)
T PRK08849        133 KLADLEFSAEGNRVTLE---SGA----EIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETE-------QPQQ  198 (384)
T ss_pred             ceeEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcC-------CCCC
Confidence            99999999999888875   553    789999999999999999999987766555444333332221       1122


Q ss_pred             ceEEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccc
Q 008258          276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKF  354 (572)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~  354 (572)
                      ...+..+.|.....+++.+.....+++..+  +.. ......+++...+.+.+.++.....+++.....|++....+++|
T Consensus       199 ~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  276 (384)
T PRK08849        199 DITWQQFTPSGPRSFLPLCGNQGSLVWYDS--PKRIKQLSAMNPEQLRSEILRHFPAELGEIKVLQHGSFPLTRRHAQQY  276 (384)
T ss_pred             CEEEEEeCCCCCEEEeEcCCCceEEEEECC--HHHHHHHHcCCHHHHHHHHHHHhhhhhCcEEeccceEeeccccccchh
Confidence            334444444433333333322233444321  110 01123456666666666665555555555555677777788899


Q ss_pred             cccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258          355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF  428 (572)
Q Consensus       355 ~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~  428 (572)
                      .  +|||+|+|||||.|+|.+|||+|+||+||.+|++.|..  .+...+.+|+.|+.+|+++...++..+....
T Consensus       277 ~--~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~--~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~  346 (384)
T PRK08849        277 V--KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEK--QGVLNDASFARYERRRRPDNLLMQTGMDLFY  346 (384)
T ss_pred             c--cCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            7  69999999999999999999999999999999999864  3445688999999999999987766554333

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=2e-40  Score=351.86  Aligned_cols=343  Identities=17%  Similarity=0.207  Sum_probs=228.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--------CCCCCeeeeChhHHHHHHhhcchHHHHHhc-CCCcc
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--------STHPQAHFINNRYALVFRKLDGLAEEIERS-QPPVD  113 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~--------~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~~  113 (572)
                      .+||+||||||+||++|+.|+++|++|+||||.+..        ...+++..++++++++|+.+ |+++++.+. ..+..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~   80 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL-GAWDGIAARRASPYS   80 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC-ChhhhhhHhhCccce
Confidence            379999999999999999999999999999998731        22457788999999999999 999998753 33432


Q ss_pred             cccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEe
Q 008258          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM  193 (572)
Q Consensus       114 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~  193 (572)
                      .+.   . .+..|.....++.   ...   ..+...+.+++..|.+.|++.+.+.|+                   ++++
T Consensus        81 ~~~---~-~~~~~~~~~~~~~---~~~---~~~~~g~~i~~~~l~~~L~~~~~~~gv-------------------~v~~  131 (405)
T PRK05714         81 EMQ---V-WDGSGTGQIHFSA---ASV---HAEVLGHIVENRVVQDALLERLHDSDI-------------------GLLA  131 (405)
T ss_pred             eEE---E-EcCCCCceEEecc---ccc---CCCccEEEEEhHHHHHHHHHHHhcCCC-------------------EEEc
Confidence            221   1 1222321111110   000   111222457788999999998887765                   8999


Q ss_pred             ccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccC
Q 008258          194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE  273 (572)
Q Consensus       194 g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~  273 (572)
                      ++++++++++++++++++.   +|+    +++||+||||||++|.||+.+++...+..+....+...+...       ..
T Consensus       132 ~~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~-------~~  197 (405)
T PRK05714        132 NARLEQMRRSGDDWLLTLA---DGR----QLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCS-------EP  197 (405)
T ss_pred             CCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcC-------CC
Confidence            9999999999888887764   453    689999999999999999999887655444433333222211       11


Q ss_pred             CCceEEEEEecCceEEEEEecCCC-CeEE-EEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCce-eEEEecCccccce
Q 008258          274 RPGMLFFIFNTEAIGVLVAHDLKE-GEFI-LQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAE  349 (572)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~i~~~~~w~~~~~  349 (572)
                      .....+..+.+.....+.+..... ..|. +.+...++. +.....+.+.+.+.+.+.++.....+ .......|++...
T Consensus       198 ~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  277 (405)
T PRK05714        198 HRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQR  277 (405)
T ss_pred             CCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEEeccee
Confidence            223344445555444444433221 1222 111111111 11122344444555544443322222 2222345667777


Q ss_pred             ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHh-cCC--CchhhHhhHHHhhhHHHHHhHHHHHH
Q 008258          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDI--APASILNTYETERKPIAEFNTALSVQ  426 (572)
Q Consensus       350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~-~g~--~~~~~L~~Y~~eR~~~a~~~~~~s~~  426 (572)
                      .+++|.  +|||+|+|||||.|+|.+|||+|+||+||.+|+|+|+... .+.  +...+|+.|+++|++++..++..+..
T Consensus       278 ~~~~~~--~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~  355 (405)
T PRK05714        278 HAKRYV--EPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEG  355 (405)
T ss_pred             ehhhhc--cCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788997  6999999999999999999999999999999999998765 342  34689999999999999999888876


Q ss_pred             HHHHh
Q 008258          427 NFRAA  431 (572)
Q Consensus       427 ~~~~~  431 (572)
                      ..+.+
T Consensus       356 ~~~~~  360 (405)
T PRK05714        356 FERLF  360 (405)
T ss_pred             HHHHH
Confidence            55444

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=4.1e-40  Score=347.53  Aligned_cols=341  Identities=20%  Similarity=0.313  Sum_probs=231.8

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccce
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~  118 (572)
                      |++..+||+||||||+||++|+.|+++|++|+||||.+.+. .+++..++++++++|+++ |+++.+...+.+...+.  
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~l-gl~~~~~~~~~~~~~~~--   78 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERL-GLWARLAPHAAPLQSMR--   78 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHh-CchhhhHhhcceeeEEE--
Confidence            44567899999999999999999999999999999997664 367888999999999999 99999987766554322  


Q ss_pred             eeeeCCCCCeeee-ecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258          119 IYCTSVTGPILGS-VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (572)
Q Consensus       119 ~~~~~~~G~~~~~-~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v  197 (572)
                       + .+..|..+.. ...+...+..  ..+. .+.+++..+++.|.+.+.+.+.                  +. +++++|
T Consensus        79 -~-~~~~g~~~~~~~~~~~~~~~~--~~~~-g~~i~~~~l~~~L~~~~~~~~~------------------~~-~~~~~v  134 (388)
T PRK07494         79 -I-VDATGRLIRAPEVRFRAAEIG--EDAF-GYNIPNWLLNRALEARVAELPN------------------IT-RFGDEA  134 (388)
T ss_pred             -E-EeCCCCCCCCceEEEcHHhcC--CCcc-EEEeEhHHHHHHHHHHHhcCCC------------------cE-EECCee
Confidence             1 1223332210 0000000100  0111 2568899999999999877653                  24 889999


Q ss_pred             EEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCce
Q 008258          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (572)
Q Consensus       198 ~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~  277 (572)
                      ++++++++++++++.   +|.    +++||+||+|||.+|.+|+.++++..+..+.+..+...+...       .+....
T Consensus       135 ~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-------~~~~~~  200 (388)
T PRK07494        135 ESVRPREDEVTVTLA---DGT----TLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHS-------RPHQNV  200 (388)
T ss_pred             EEEEEcCCeEEEEEC---CCC----EEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEecc-------CCCCCE
Confidence            999998899887764   443    689999999999999999999988766655444444333221       112233


Q ss_pred             EEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEE-EecCccccceecccccc
Q 008258          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLC  356 (572)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-~~~~w~~~~~~a~~~~~  356 (572)
                      .+.++.+.+...+.+.+.....+++..+... .......+++.+.+.+.+.+......++.. ....|++....+++|. 
T Consensus       201 ~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-  278 (388)
T PRK07494        201 STEFHTEGGPFTQVPLPGRRSSLVWVVRPAE-AERLLALSDAALSAAIEERMQSMLGKLTLEPGRQAWPLSGQVAHRFA-  278 (388)
T ss_pred             EEEEeCCCCcEEEEECCCCcEEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHhhhcCCeEEccCCcEeechHHHHHhhc-
Confidence            3344445444333333322222333222110 011223455556665555444332333322 2345777777778887 


Q ss_pred             cCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHH
Q 008258          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS  424 (572)
Q Consensus       357 ~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s  424 (572)
                       .+||+|+|||||.++|++|||||+||+||.+|+|+|.....+.....+|++|+++|+++...++...
T Consensus       279 -~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~  345 (388)
T PRK07494        279 -AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASV  345 (388)
T ss_pred             -cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence             5999999999999999999999999999999999999865555568899999999999987665443

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=1.9e-39  Score=344.24  Aligned_cols=341  Identities=21%  Similarity=0.265  Sum_probs=227.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC--CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~~--~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      +||+||||||+||++|+.|+++|  ++|+||||.+...  ..+++..++++++++|+.+ |+++.+...+.+....   .
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~---~   77 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEAL-GVWDEIAPEAQPITDM---V   77 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHC-CChhhhhhhcCcccEE---E
Confidence            79999999999999999999995  9999999998643  3479999999999999999 9999998877665332   1


Q ss_pred             eeeCCCCCeeee--ecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258          120 YCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (572)
Q Consensus       120 ~~~~~~G~~~~~--~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v  197 (572)
                      +.....+.....  .+...  .... ..+ ..+.++|..|++.|.+.+.+.|+                   ++++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~-~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v  134 (403)
T PRK07333         78 ITDSRTSDPVRPVFLTFEG--EVEP-GEP-FAHMVENRVLINALRKRAEALGI-------------------DLREATSV  134 (403)
T ss_pred             EEeCCCCCCCccceEEecc--cccC-CCc-cEEEeEhHHHHHHHHHHHHhCCC-------------------EEEcCCEE
Confidence            211111111110  00000  0000 011 12467899999999999988876                   89999999


Q ss_pred             EEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCce
Q 008258          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (572)
Q Consensus       198 ~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~  277 (572)
                      ++++++++++.+++.   +|.    +++||+||+|||.+|.+|+.+|+...+....+..+.......       ......
T Consensus       135 ~~i~~~~~~v~v~~~---~g~----~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~  200 (403)
T PRK07333        135 TDFETRDEGVTVTLS---DGS----VLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHE-------RPHGGR  200 (403)
T ss_pred             EEEEEcCCEEEEEEC---CCC----EEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcC-------CCCCCE
Confidence            999998888877764   453    689999999999999999999887654433332222222111       011122


Q ss_pred             EEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCccccceeccccc
Q 008258          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFL  355 (572)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~~~~a~~~~  355 (572)
                      ....+.++....+++..  .+...+.+...+.. ......+.+...+.+.+.++.....+...+ ...|+.....+++|.
T Consensus       201 ~~~~~~~~g~~~~~Pl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (403)
T PRK07333        201 AEEHFLPAGPFAILPLK--GNRSSLVWTERTADAERLVALDDLVFEAELEQRFGHRLGELKVLGKRRAFPLGLTLARSFV  278 (403)
T ss_pred             EEEEeCCCCceEEeECC--CCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCceEeccCccEeechhhhhhhcc
Confidence            23334454444444333  23332222211100 011122333344445554444333333322 224566666778886


Q ss_pred             ccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcC---CCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD---IAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       356 ~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g---~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                        .|||+|+|||||.++|++|||+|+||+||.+|+|+|+.+++.   .+.+.+|++|+++|++++..++..+....+
T Consensus       279 --~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~  353 (403)
T PRK07333        279 --APRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNR  353 (403)
T ss_pred             --CCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence              699999999999999999999999999999999999988742   346899999999999999888776654443

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=100.00  E-value=2.3e-39  Score=342.19  Aligned_cols=332  Identities=16%  Similarity=0.226  Sum_probs=222.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-----CCCeeeeChhHHHHHHhhcchHHHHHhc-CCCccc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-----HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDL  114 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~-----~~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~~~  114 (572)
                      ...+||+||||||+|+++|+.|+++|++|+||||.+.+..     ..++..++++++++|+++ |+++.+.+. ..+...
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~   82 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL-GVWPAVRAARAQPYRR   82 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC-CchhhhhHhhCCcccE
Confidence            4558999999999999999999999999999999875432     235678999999999999 999998763 333322


Q ss_pred             ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (572)
Q Consensus       115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g  194 (572)
                      +  ..+.. ..+..+ .++..   ..   ..+...+.+++..|.+.|.+.+.+.|+                   +++++
T Consensus        83 ~--~~~~~-~~~~~~-~~~~~---~~---~~~~~~~~v~~~~l~~~L~~~~~~~gv-------------------~i~~~  133 (392)
T PRK08773         83 M--RVWDA-GGGGEL-GFDAD---TL---GREQLGWIVENDLLVDRLWAALHAAGV-------------------QLHCP  133 (392)
T ss_pred             E--EEEeC-CCCceE-Eechh---cc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EEEcC
Confidence            1  11211 111111 11110   00   011112467889999999999988776                   89999


Q ss_pred             cEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCC
Q 008258          195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER  274 (572)
Q Consensus       195 ~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~  274 (572)
                      +++++++++++++++++.   +|+    +++||+||+|||.+|.+|+.+|++..+..+.+..+...... +      .+.
T Consensus       134 ~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~-~------~~~  199 (392)
T PRK08773        134 ARVVALEQDADRVRLRLD---DGR----RLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDT-E------HPH  199 (392)
T ss_pred             CeEEEEEecCCeEEEEEC---CCC----EEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEc-c------CCC
Confidence            999999998888877664   453    68999999999999999999988765443332222222221 1      112


Q ss_pred             CceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCccccceeccc
Q 008258          275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK  353 (572)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~~~~a~~  353 (572)
                      +...+..+.++....+++.+.....+++..|... .+....++.+.+.+.+.+.++.....++... ...|++...++++
T Consensus       200 ~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  278 (392)
T PRK08773        200 QATAWQRFLPTGPLALLPFADGRSSIVWTLPDAE-AERVLALDEAAFSRELTQAFAARLGEVRVASPRTAFPLRRQLVQQ  278 (392)
T ss_pred             CCEEEEEeCCCCcEEEEECCCCceEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHhhhhcCeEecCCccEeechhhhhhh
Confidence            3334444555544444444333233444433111 0112234444455555554443333333322 2346666667888


Q ss_pred             ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc---CCCchhhHhhHHHhhhHHHHH
Q 008258          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEF  419 (572)
Q Consensus       354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~---g~~~~~~L~~Y~~eR~~~a~~  419 (572)
                      |.  +|||+|+|||||.++|++|||+|+||+||.+|+++|..+++   +.....+|++|+++|+++...
T Consensus       279 ~~--~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~  345 (392)
T PRK08773        279 YV--SGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTV  345 (392)
T ss_pred             hc--CCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            87  69999999999999999999999999999999999998763   334568999999999999653

>PRK06996 hypothetical protein; Provisional

Probab=100.00  E-value=3.3e-39  Score=341.38  Aligned_cols=345  Identities=17%  Similarity=0.196  Sum_probs=231.9

Q ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCCC--CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCC
Q 008258           38 VSNEAVVPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPP  111 (572)
Q Consensus        38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~G----i~v~viEr~~~~--~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~  111 (572)
                      +|....+||+||||||+|+++|+.|+++|    ++|+|+|+.+.+  ...+++..++++++++|+++ |+++.   ...+
T Consensus         6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~l-g~~~~---~~~~   81 (398)
T PRK06996          6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETL-GAWPA---DATP   81 (398)
T ss_pred             hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhC-CCchh---cCCc
Confidence            35567789999999999999999999997    469999998644  33568999999999999999 99886   2333


Q ss_pred             cccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceE
Q 008258          112 VDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREI  191 (572)
Q Consensus       112 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i  191 (572)
                      .....  ++.....|.......     ++   ..+...+.++|..|++.|.+.+.+.|+                   ++
T Consensus        82 ~~~~~--~~~~~~~g~~~~~~~-----~~---~~~~~g~~v~r~~l~~~L~~~~~~~g~-------------------~~  132 (398)
T PRK06996         82 IEHIH--VSQRGHFGRTLIDRD-----DH---DVPALGYVVRYGSLVAALARAVRGTPV-------------------RW  132 (398)
T ss_pred             ccEEE--EecCCCCceEEeccc-----cc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EE
Confidence            32111  111111222221111     11   112224578899999999999988876                   88


Q ss_pred             EeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCC-ChhhhhhcCCccccccCcceEEEEEEecCcccccc
Q 008258          192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA-GSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL  270 (572)
Q Consensus       192 ~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~-~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~  270 (572)
                      +++++++++++++++|++++.   ++++ +++++||+||||||. +|.+|+.+++...+..+.+..+...+...      
T Consensus       133 ~~~~~v~~~~~~~~~v~v~~~---~~~g-~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~------  202 (398)
T PRK06996        133 LTSTTAHAPAQDADGVTLALG---TPQG-ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVS------  202 (398)
T ss_pred             EcCCeeeeeeecCCeEEEEEC---CCCc-ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEcc------
Confidence            999999999999999888765   3322 247999999999997 57889998887766655444333322211      


Q ss_pred             ccCCCceEEEEEecCceEEEEEecCCCC-eEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCcccc
Q 008258          271 LNERPGMLFFIFNTEAIGVLVAHDLKEG-EFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMH  347 (572)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~  347 (572)
                       ...+...+..+.+.+...+.+.+.... .+.+.+...++. .....++.+...+.+.+.++.....+.... ...|++.
T Consensus       203 -~~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  281 (398)
T PRK06996        203 -APRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHAFPLG  281 (398)
T ss_pred             -CCCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEEecceEEEeee
Confidence             112333333444544433333332211 133322211111 112344555666667666665444443322 2245566


Q ss_pred             ceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHH
Q 008258          348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN  427 (572)
Q Consensus       348 ~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~  427 (572)
                      ...+++|.  +|||+|+|||||.++|.+|||+|+||+||.+|||+|..  .+ ..+.+|++|+++|++++..++..+...
T Consensus       282 ~~~~~~~~--~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~--~~-~~~~~L~~Y~~~R~~~~~~~~~~s~~l  356 (398)
T PRK06996        282 LNAARTLV--NGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD--HG-ATPLALATFAARRALDRRVTIGATDLL  356 (398)
T ss_pred             ccccccee--cCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh--cC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777887  69999999999999999999999999999999999975  23 346789999999999999888887765


Q ss_pred             HHHh
Q 008258          428 FRAA  431 (572)
Q Consensus       428 ~~~~  431 (572)
                      .+.+
T Consensus       357 ~~~~  360 (398)
T PRK06996        357 PRLF  360 (398)
T ss_pred             HHHH
Confidence            5443

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=100.00  E-value=2.7e-39  Score=340.68  Aligned_cols=339  Identities=22%  Similarity=0.302  Sum_probs=227.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCC----CCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTH----PQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~~~~----~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      ||+||||||+||++|+.|+++| ++|+|+||.+.+...    +++..++++++++|+++ |+.+++...+.+...+..  
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~--   77 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL-GLWPKLAPFATPILDIHV--   77 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC-CChhhhHhhcCccceEEE--
Confidence            7999999999999999999999 999999999877554    57899999999999999 999998877655432211  


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECV  198 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~  198 (572)
                      ......+...  ..   ..++   ..+...+.++|..|++.|.+.+.+. |+                   +++++++++
T Consensus        78 ~~~~~~~~~~--~~---~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~gv-------------------~~~~~~~v~  130 (382)
T TIGR01984        78 SDQGHFGATH--LR---ASEF---GLPALGYVVELADLGQALLSRLALLTNI-------------------QLYCPARYK  130 (382)
T ss_pred             EcCCCCceEE--ec---hhhc---CCCccEEEEEcHHHHHHHHHHHHhCCCc-------------------EEEcCCeEE
Confidence            1000111111  10   0011   1122235678999999999999874 65                   899999999


Q ss_pred             EEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceE
Q 008258          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (572)
Q Consensus       199 ~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (572)
                      +++++++++++++.   +|.    +++||+||+|||.+|.||+.++++.......+..+...+....       ......
T Consensus       131 ~i~~~~~~~~v~~~---~g~----~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  196 (382)
T TIGR01984       131 EIIRNQDYVRVTLD---NGQ----QLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQ-------PHQGCA  196 (382)
T ss_pred             EEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecC-------CCCCEE
Confidence            99988888877764   453    6899999999999999999998765544322222222221110       111222


Q ss_pred             EEEEecCceEEEEEecCCCC-eEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeE-EEecCccccceeccccc
Q 008258          279 FFIFNTEAIGVLVAHDLKEG-EFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKFL  355 (572)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i-~~~~~w~~~~~~a~~~~  355 (572)
                      +..+.++....+++.+  .+ .+.+.+...++. +...+.+.+.+.+.+.+.+++....+.. .....|++....+++|.
T Consensus       197 ~~~~~~~g~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (382)
T TIGR01984       197 FERFTPHGPLALLPLK--DNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTYPLKLRIAETHV  274 (382)
T ss_pred             EEeeCCCCCeEECcCC--CCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEeecchhhhhhee
Confidence            2233333333333332  22 333322211110 1112344555555555555543323222 12345666666777786


Q ss_pred             ccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       356 ~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                        .|||+|+|||||.++|++|||+|+||+||.+|+|+|+.+..+...+.+|+.|+++|+++...++..+....+.+
T Consensus       275 --~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~  348 (382)
T TIGR01984       275 --HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLF  348 (382)
T ss_pred             --cCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              69999999999999999999999999999999999998754445678999999999999998888776554433

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06475 salicylate hydroxylase; Provisional

Probab=100.00  E-value=3.1e-39  Score=341.95  Aligned_cols=339  Identities=17%  Similarity=0.176  Sum_probs=215.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+||||||+||++|++|+++|++|+|+||.+.+...++++.++++++++|+++ |+++++...+.+...   +.+...
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~-Gl~~~l~~~~~~~~~---~~~~~g   78 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERL-GVADRLSGTGVTPKA---LYLMDG   78 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHC-CChHHHhhcccCcce---EEEecC
Confidence            5899999999999999999999999999999998888899999999999999999 999999876654321   112111


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                      ..+......+...   .........+..++|..|+++|++.+.+.+                  ++++++++++++++++
T Consensus        79 ~~~~~~~~~~~~~---~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~------------------~i~v~~~~~v~~~~~~  137 (400)
T PRK06475         79 RKARPLLAMQLGD---LARKRWHHPYIVCHRADLQSALLDACRNNP------------------GIEIKLGAEMTSQRQT  137 (400)
T ss_pred             CCcceEEEecchh---hhhhcCCCCceeECHHHHHHHHHHHHHhcC------------------CcEEEECCEEEEEecC
Confidence            1222111111100   000011223456899999999999986642                  2389999999999998


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCcc---ccccCcceEEEEEEecCccccccc--cCCCceE
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL---VGEKDLQKLVSVHFLSKDLGDYLL--NERPGML  278 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~---~g~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~  278 (572)
                      ++++++++...+++    .++++|+||||||++|.||++++...   .|...++..+..    ..+.....  .......
T Consensus       138 ~~~v~v~~~~~~~~----~~~~adlvIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~  209 (400)
T PRK06475        138 GNSITATIIRTNSV----ETVSAAYLIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAA----DALPASFLSAMPEHKAV  209 (400)
T ss_pred             CCceEEEEEeCCCC----cEEecCEEEECCCccHhHHhhcCCCCCCcCCceEEEEEeeh----hhcchhhhhhcccCCce
Confidence            88988887632222    26899999999999999999986532   122222222211    11111000  0112223


Q ss_pred             EEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCC----CHHHHHHHHHHHhCCCCCc---eeE-EEecCcccccee
Q 008258          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF----SPEICEKLIFKLVGWELSD---IDV-IDIKPWVMHAEV  350 (572)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~---~~i-~~~~~w~~~~~~  350 (572)
                      ..++.++...+..+.... ..+.+.. +.++......+    +.+.+.+..   .++.+.-   ++. .....|++....
T Consensus       210 ~~~~g~~~~~~~~p~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~l~~~~  284 (400)
T PRK06475        210 SAWLGNKAHFIAYPVKGG-KFFNFVA-ITGGENPGEVWSKTGDKAHLKSIY---ADWNKPVLQILAAIDEWTYWPLFEMA  284 (400)
T ss_pred             EEEEcCCCEEEEEEccCC-cEEEEEE-EEcCCCCcccCCCCCCHHHHHHHh---cCCChHHHHHHhcCCceeECcCcccC
Confidence            334455544333333211 2232221 11111111111    222222222   2222210   111 112345555444


Q ss_pred             cccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHH
Q 008258          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV  425 (572)
Q Consensus       351 a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~  425 (572)
                      ..+|. .+|||+|+|||||.++|+.|||+|+||+||.+|+++|..    ...+.+|+.|+++|+|+++.++..+.
T Consensus       285 ~~~~~-~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~----~~~~~aL~~Ye~~R~~r~~~~~~~s~  354 (400)
T PRK06475        285 DAQFV-GPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS----DDQSAGLKRFDSVRKERIAAVAKRGQ  354 (400)
T ss_pred             CCcce-ecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45553 269999999999999999999999999999999999963    23568999999999999999888774

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=100.00  E-value=1e-38  Score=337.30  Aligned_cols=337  Identities=18%  Similarity=0.227  Sum_probs=222.6

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC------CCCCeeeeChhHHHHHHhhcchHHHHHhc-CCCc
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS------THPQAHFINNRYALVFRKLDGLAEEIERS-QPPV  112 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~------~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~  112 (572)
                      ....+||+||||||+|+++|+.|++.|++|+|||+.+.+.      ...++..++++++++|+.+ |+++.+... ..+.
T Consensus         2 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~   80 (391)
T PRK08020          2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL-GVWDAVQAMRSHPY   80 (391)
T ss_pred             CcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc-CChhhhhhhhCccc
Confidence            3566899999999999999999999999999999986432      1236688999999999999 999988763 2332


Q ss_pred             ccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceE
Q 008258          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI  191 (572)
Q Consensus       113 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i  191 (572)
                      ..+..   .....+.......     +.   ..+...+.++|..|++.|.+.+.+. |+                   ++
T Consensus        81 ~~~~~---~~~~~~~~~~~~~-----~~---~~~~~g~~i~r~~l~~~L~~~~~~~~gv-------------------~i  130 (391)
T PRK08020         81 RRLET---WEWETAHVVFDAA-----EL---KLPELGYMVENRVLQLALWQALEAHPNV-------------------TL  130 (391)
T ss_pred             ceEEE---EeCCCCeEEeccc-----cc---CCCccEEEEEcHHHHHHHHHHHHcCCCc-------------------EE
Confidence            22111   1111222211100     01   1122234688999999999988765 54                   88


Q ss_pred             EeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccc
Q 008258          192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL  271 (572)
Q Consensus       192 ~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~  271 (572)
                      ++++++++++++++++++++.   +|+    +++||+||+|||++|.||+.++++..+..+.+..........       
T Consensus       131 ~~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~-------  196 (391)
T PRK08020        131 RCPASLQALQRDDDGWELTLA---DGE----EIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCE-------  196 (391)
T ss_pred             EcCCeeEEEEEcCCeEEEEEC---CCC----EEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEec-------
Confidence            999999999988888777664   443    689999999999999999999887665544443333322211       


Q ss_pred             cCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceec
Q 008258          272 NERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVA  351 (572)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a  351 (572)
                      .......+..+.+.....+++........++..+ ..........+.+.+.+.+.+.++.....+.......|++....+
T Consensus       197 ~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~~~  275 (391)
T PRK08020        197 NPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDS-PARIRQLQAMSMAQLQQEIAAHFPARLGAVTPVAAGAFPLTRRHA  275 (391)
T ss_pred             CCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECC-HHHHHHHHCCCHHHHHHHHHHHhhhhccceEeccccEeecceeeh
Confidence            1112223333434332333333211111222111 000001122344555555554444333334444455677777778


Q ss_pred             ccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-C--CCchhhHhhHHHhhhHHHHHhHHHH
Q 008258          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D--IAPASILNTYETERKPIAEFNTALS  424 (572)
Q Consensus       352 ~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g--~~~~~~L~~Y~~eR~~~a~~~~~~s  424 (572)
                      ++|.  ++||+|+|||||.++|++|||+|+||+||.+|+++|+...+ +  .....+|++|+++|++....+...+
T Consensus       276 ~~~~--~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~  349 (391)
T PRK08020        276 LQYV--QPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGM  349 (391)
T ss_pred             hhhc--cCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887  69999999999999999999999999999999999998753 2  2356899999999999876554433

>PRK07588 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-38  Score=335.69  Aligned_cols=335  Identities=17%  Similarity=0.216  Sum_probs=218.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      .||+||||||+||++|+.|+++|++|+|+||.+.....++++.++++++++|+++ |+++++.+.+.+...+.   . .+
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~---~-~~   75 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRM-GITDQLREAGYQIEHVR---S-VD   75 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHc-CCHHHHHhccCCccceE---E-Ec
Confidence            3899999999999999999999999999999988877778888999999999999 99999988776654322   1 23


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                      .+|..+...+..   .+.. ..+.....++|..|.+.|++.+.. ++                   +++++++|++++++
T Consensus        76 ~~g~~~~~~~~~---~~~~-~~g~~~~~i~r~~l~~~L~~~~~~-~v-------------------~i~~~~~v~~i~~~  131 (391)
T PRK07588         76 PTGRRKADLNVD---SFRR-MVGDDFTSLPRGDLAAAIYTAIDG-QV-------------------ETIFDDSIATIDEH  131 (391)
T ss_pred             CCCCEEEEecHH---Hccc-cCCCceEEEEHHHHHHHHHHhhhc-Ce-------------------EEEeCCEEeEEEEC
Confidence            456555443321   1110 112234578899999999886533 44                   89999999999999


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEE-E
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI-F  282 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~  282 (572)
                      ++++++++.   +|+    ++++|+||||||++|.||+.+.........+.......+....   .  ...+...+.. .
T Consensus       132 ~~~v~v~~~---~g~----~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~~~~~~~~~  199 (391)
T PRK07588        132 RDGVRVTFE---RGT----PRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDG---Y--RPRDERTYVLYN  199 (391)
T ss_pred             CCeEEEEEC---CCC----EEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCC---C--CCCCCceEEEEe
Confidence            999887765   554    5789999999999999999763221111112221111111111   1  1112222222 2


Q ss_pred             ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCC-CCC--c-eeEE-EecCc---cccceecccc
Q 008258          283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGW-ELS--D-IDVI-DIKPW---VMHAEVAEKF  354 (572)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~--~-~~i~-~~~~w---~~~~~~a~~~  354 (572)
                      .++......+.  ..+.+.+.+....+. ....++.+...+.+++.++. ...  . ++.. ....+   ......+++|
T Consensus       200 ~~g~~~~~~p~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  276 (391)
T PRK07588        200 EVGRQVARVAL--RGDRTLFLFIFRAEH-DNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRW  276 (391)
T ss_pred             CCCCEEEEEec--CCCCeEEEEEEEcCC-ccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCcc
Confidence            34332233332  234433333222221 12334555555556555432 110  1 1111 11111   2233455677


Q ss_pred             cccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHH
Q 008258          355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ  426 (572)
Q Consensus       355 ~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~  426 (572)
                      .  +|||+|+|||||.|+|+.|||+|+||+||.+|+++|+...  ...+.+|+.|+++|+|++..++..+..
T Consensus       277 ~--~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~--~~~~~al~~Y~~~R~~~~~~~~~~~~~  344 (391)
T PRK07588        277 S--RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG--GDHRRAFDAYEKRLRPFIAGKQAAAAK  344 (391)
T ss_pred             c--cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            6  6999999999999999999999999999999999998632  245789999999999999988877653

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=100.00  E-value=3.7e-38  Score=332.03  Aligned_cols=338  Identities=20%  Similarity=0.232  Sum_probs=213.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~--~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      .+||+||||||+||++|+.|++.|++|+||||.+.+.  ...++..++++++++|+++ |+++++...+.+...+..   
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~~---   77 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREA-GVDERMDREGLVHEGTEI---   77 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHC-CChHHHHhcCceecceEE---
Confidence            3799999999999999999999999999999998642  2457778999999999999 999999887765533221   


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                      . + .+ .....+....      ........++|..|.+.|++.+.+.|+                   .++++++++.+
T Consensus        78 ~-~-~~-~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~~~~~~g~-------------------~~~~~~~~v~~  129 (390)
T TIGR02360        78 A-F-DG-QRFRIDLKAL------TGGKTVMVYGQTEVTRDLMEAREAAGL-------------------TTVYDADDVRL  129 (390)
T ss_pred             e-e-CC-EEEEEecccc------CCCceEEEeCHHHHHHHHHHHHHhcCC-------------------eEEEeeeeEEE
Confidence            1 1 12 1222221100      011112234678889999998877765                   78899988887


Q ss_pred             ee-eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCcc----ccccCcceEEEEEEecCccccccccCCC
Q 008258          201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL----VGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (572)
Q Consensus       201 ~~-~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~----~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (572)
                      .+ +++.+.|++.  .+|+  +.+++||+||||||++|.||++++...    .+... ..+..+.....        ..+
T Consensus       130 ~~~~~~~~~V~~~--~~g~--~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~-~~~~~l~~~~~--------~~~  196 (390)
T TIGR02360       130 HDLAGDRPYVTFE--RDGE--RHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYP-FGWLGILSETP--------PVS  196 (390)
T ss_pred             EecCCCccEEEEE--ECCe--EEEEEeCEEEECCCCchhhHHhcCcccceeeeccCC-cceEEEecCCC--------CCC
Confidence            65 5566677764  2442  347899999999999999999985432    11110 01111110000        011


Q ss_pred             ceEEEEEecCceEEEEEec-CCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE----ecCcccccee
Q 008258          276 GMLFFIFNTEAIGVLVAHD-LKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID----IKPWVMHAEV  350 (572)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~----~~~w~~~~~~  350 (572)
                      ....+ ..++....+.+.. .....|.+.++.   ......++.+...+.+.+.+...........    ....++....
T Consensus       197 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  272 (390)
T TIGR02360       197 HELIY-SNHERGFALCSMRSATRSRYYVQVPL---TDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEKSIAPLRSFV  272 (390)
T ss_pred             CceEE-EeCCCceEEEeccCCCcceEEEEcCC---CCChhhCChhHHHHHHHHhcCchhhhhhccCCccceeeeeHHhhc
Confidence            11112 1222222222221 111234443331   1123344444444444444332111110000    0111233445


Q ss_pred             cccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (572)
Q Consensus       351 a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~  430 (572)
                      +++|.  .|||+|+|||||.++|+.|||+|+||+||.+|+++|..... .+.+.+|+.|+++|++++..+++.|....+.
T Consensus       273 ~~~~~--~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~-~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~  349 (390)
T TIGR02360       273 CEPMQ--YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ-EGSSAGIEGYSARALARVWKAERFSWWMTSL  349 (390)
T ss_pred             cccCc--cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66775  69999999999999999999999999999999999987543 2357899999999999999999888765554


Q ss_pred             hc
Q 008258          431 AM  432 (572)
Q Consensus       431 ~~  432 (572)
                      ..
T Consensus       350 ~~  351 (390)
T TIGR02360       350 LH  351 (390)
T ss_pred             hc
Confidence            43

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=100.00  E-value=1.8e-38  Score=334.51  Aligned_cols=340  Identities=21%  Similarity=0.281  Sum_probs=228.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-----CCeeeeChhHHHHHHhhcchHHHHHh-cCCCcccccce
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-----PQAHFINNRYALVFRKLDGLAEEIER-SQPPVDLWRKF  118 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~-----~~a~~l~~rt~e~l~~l~Gl~~~l~~-~~~~~~~~~~~  118 (572)
                      ||+||||||+||++|+.|+++|++|+|+||++.+...     ++++.++++++++|+++ |+++++.+ .+.+.....  
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~~~--   77 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL-GVWDKIEPDRAQPIRDIH--   77 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC-CchhhhhhhcCCCceEEE--
Confidence            7999999999999999999999999999999886433     47899999999999999 99999887 555543221  


Q ss_pred             eeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEE
Q 008258          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (572)
Q Consensus       119 ~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~  198 (572)
                      .+  +..+........   ...   ..+...+.++|..|++.|++.+.+.|                  +++++++++|+
T Consensus        78 ~~--~~~~~~~~~~~~---~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~------------------~~~v~~~~~v~  131 (385)
T TIGR01988        78 VS--DGGSFGALHFDA---DEI---GLEALGYVVENRVLQQALWERLQEYP------------------NVTLLCPARVV  131 (385)
T ss_pred             EE--eCCCCceEEech---hhc---CCCccEEEEEcHHHHHHHHHHHHhCC------------------CcEEecCCeEE
Confidence            11  112221111110   000   11222356889999999999998876                  13899999999


Q ss_pred             EEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceE
Q 008258          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (572)
Q Consensus       199 ~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (572)
                      +++++++++++++.   +|.    ++++|+||+|||++|.+|++++++..........+...+....       ..+...
T Consensus       132 ~i~~~~~~~~v~~~---~g~----~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  197 (385)
T TIGR01988       132 ELPRHSDHVELTLD---DGQ----QLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHER-------PHQGTA  197 (385)
T ss_pred             EEEecCCeeEEEEC---CCC----EEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecC-------CCCCEE
Confidence            99988888877654   553    5899999999999999999998765543332222222222111       112222


Q ss_pred             EEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeE-EEecCccccceecccccc
Q 008258          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKFLC  356 (572)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i-~~~~~w~~~~~~a~~~~~  356 (572)
                      +..+.++....+++.+  .+.+.+.+...+.. .....++++.+.+.+.+.++.....+.. .....|++....+++|. 
T Consensus       198 ~~~~~~~g~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  274 (385)
T TIGR01988       198 WERFTPTGPLALLPLP--DNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYV-  274 (385)
T ss_pred             EEEecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEeccCcceeechhhhhhhee-
Confidence            2233344333333333  23333333221111 1112345555555565554322222222 22345566566677776 


Q ss_pred             cCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-C--CCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D--IAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       357 ~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g--~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                       .+||+|+|||||.++|++|||+|+||+||.+|+++|...++ +  ...+.+|+.|+++|+++++.++..+....+.+
T Consensus       275 -~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~  351 (385)
T TIGR01988       275 -APRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLF  351 (385)
T ss_pred             -cCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             69999999999999999999999999999999999998764 2  23478999999999999999888876555433

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=100.00  E-value=3.8e-38  Score=332.62  Aligned_cols=338  Identities=19%  Similarity=0.283  Sum_probs=227.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-----CCCeeeeChhHHHHHHhhcchHHHHHhcC-CCccccc
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-----HPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLWR  116 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~-----~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~-~~~~~~~  116 (572)
                      ++||+||||||+||++|+.|++.|++|+|+||.+.+..     .++++.++++++++|+.+ |+++++.... .+...+.
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~   83 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL-GVWQALDAARLAPVYDMR   83 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc-CchhhhhhhcCCcceEEE
Confidence            57999999999999999999999999999999988654     346689999999999999 9999876432 2332221


Q ss_pred             ceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcC-ceeeccCCcccccccccccceEEecc
Q 008258          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLN-FKICTSEGTEGLHNHLLQGREILMGH  195 (572)
Q Consensus       117 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~g~  195 (572)
                         ......+...  ..     .+. ...|...+.++|..|++.|.+.+.+.| +                   +++ ++
T Consensus        84 ---~~~~~~~~~~--~~-----~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~v-------------------~~~-~~  132 (388)
T PRK07608         84 ---VFGDAHARLH--FS-----AYQ-AGVPQLAWIVESSLIERALWAALRFQPNL-------------------TWF-PA  132 (388)
T ss_pred             ---EEECCCceeE--ee-----ccc-cCCCCCEEEEEhHHHHHHHHHHHHhCCCc-------------------EEE-cc
Confidence               1111111111  00     010 012333456789999999999998876 4                   777 89


Q ss_pred             EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCC
Q 008258          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (572)
Q Consensus       196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (572)
                      ++++++++++++++++.   +|.    +++||+||+|||++|.+|+.++.........+..+...+....       ...
T Consensus       133 ~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  198 (388)
T PRK07608        133 RAQGLEVDPDAATLTLA---DGQ----VLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER-------PHR  198 (388)
T ss_pred             eeEEEEecCCeEEEEEC---CCC----EEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC-------CCC
Confidence            99999988888877664   443    6899999999999999999998876554443333333333211       112


Q ss_pred             ceEEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEE-EecCccccceeccc
Q 008258          276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEK  353 (572)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-~~~~w~~~~~~a~~  353 (572)
                      ...+.++.++...++++.+  .+++.+.+....+. ......+++.+.+.+.+........+... ....|++.....+.
T Consensus       199 ~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (388)
T PRK07608        199 GTAYQWFRDDGILALLPLP--DGHVSMVWSARTAHADELLALSPEALAARVERASGGRLGRLECVTPAAGFPLRLQRVDR  276 (388)
T ss_pred             CEEEEEecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHhcCCceecCCcceeecchhhhhh
Confidence            2334444555444444433  34443322211110 11122355566666665543222223222 22345666556677


Q ss_pred             ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHh--cCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL--KDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (572)
Q Consensus       354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~--~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~  430 (572)
                      |.  ++||+|+|||||.++|++|||+|+||+||.+|||+|....  .+....++|++|+++|+++...+...+....+.
T Consensus       277 ~~--~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~  353 (388)
T PRK07608        277 LV--APRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRL  353 (388)
T ss_pred             hh--cCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76  6999999999999999999999999999999999998764  233446899999999999999887776654443

>PRK06753 hypothetical protein; Provisional

Probab=100.00  E-value=2.8e-38  Score=331.88  Aligned_cols=328  Identities=19%  Similarity=0.217  Sum_probs=213.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      ++|+||||||+||++|+.|++.|++|+|+||++.+...++++.++++++++|+.+ |+.+.+...+.+.....   + .+
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~-gl~~~~~~~~~~~~~~~---~-~~   75 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNH-DLAKGIKNAGQILSTMN---L-LD   75 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhc-ChHHHHHhcCCccccee---E-Ec
Confidence            3799999999999999999999999999999999888889999999999999999 99999887765543322   1 23


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                      .+|+.+.....      .  . ......++|..|.++|.+.+..                     .++++++++++++++
T Consensus        76 ~~g~~~~~~~~------~--~-~~~~~~i~R~~l~~~L~~~~~~---------------------~~i~~~~~v~~i~~~  125 (373)
T PRK06753         76 DKGTLLNKVKL------K--S-NTLNVTLHRQTLIDIIKSYVKE---------------------DAIFTGKEVTKIENE  125 (373)
T ss_pred             CCCCEEeeccc------c--c-CCccccccHHHHHHHHHHhCCC---------------------ceEEECCEEEEEEec
Confidence            35554433221      0  0 1123568999999999887632                     378999999999998


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEEe
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN  283 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  283 (572)
                      ++++++++.   +|+    ++++|+||||||.+|.||+.++.....  .+.....+........ .  . .+.....++.
T Consensus       126 ~~~v~v~~~---~g~----~~~~~~vigadG~~S~vR~~~~~~~~~--~~~g~~~~~~~~~~~~-~--~-~~~~~~~~~~  192 (373)
T PRK06753        126 TDKVTIHFA---DGE----SEAFDLCIGADGIHSKVRQSVNADSKV--RYQGYTCFRGLIDDID-L--K-LPDCAKEYWG  192 (373)
T ss_pred             CCcEEEEEC---CCC----EEecCEEEECCCcchHHHHHhCCCCCc--eEcceEEEEEEecccc-c--c-CccceEEEEc
Confidence            888888765   553    579999999999999999998753211  1111111111111100 0  0 1111222333


Q ss_pred             cCceEEEEEecCCCCeEEEEeecCC--CCCCCCCCCHHHHHHHHHHH-------hCCCCCceeEEEecCccc-cceeccc
Q 008258          284 TEAIGVLVAHDLKEGEFILQVPFYP--PQQNLEDFSPEICEKLIFKL-------VGWELSDIDVIDIKPWVM-HAEVAEK  353 (572)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~i~~~~~w~~-~~~~a~~  353 (572)
                      ++....+.+.  ..+...+.+....  ......+.+.+.+.+.+..+       +.... ...+   ..|.. .....++
T Consensus       193 ~~g~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~  266 (373)
T PRK06753        193 TKGRFGIVPL--LNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQS-ETGI---LHHDIYDLKPLKS  266 (373)
T ss_pred             CCCEEEEEEc--CCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCC-cccc---eeecccccccccc
Confidence            3332223322  2233233222211  11122233333333332211       11000 0000   11111 1123456


Q ss_pred             ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                      |.  .|||+|+|||||.|+|+.|||+|+||+||.+|++.|..    .+.+.+|+.|+++|++++..+++.+....+..
T Consensus       267 ~~--~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~----~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  338 (373)
T PRK06753        267 FV--YGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA----YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIA  338 (373)
T ss_pred             cc--CCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Confidence            75  59999999999999999999999999999999999953    35688999999999999999998887655433

>PRK07538 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-37  Score=330.87  Aligned_cols=342  Identities=20%  Similarity=0.225  Sum_probs=217.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      +||+||||||+||++|+.|+++|++|+||||++.+.+.+.+..++++++++|+++ |+++++...+.+...+.   + .+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~l-gl~~~l~~~~~~~~~~~---~-~~   75 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAEL-GLLDALDAIGIRTRELA---Y-FN   75 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHC-CCHHHHHhhCCCCcceE---E-Ec
Confidence            4899999999999999999999999999999998887888999999999999999 99999988766553332   2 12


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHh-cCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                      ..|+.+.........     ....+.+.++|..|+++|++.+.+ .|.                  ..|+++++|+++++
T Consensus        76 ~~g~~~~~~~~~~~~-----~~~~~~~~i~R~~l~~~L~~~~~~~~g~------------------~~i~~~~~v~~~~~  132 (413)
T PRK07538         76 RHGQRIWSEPRGLAA-----GYDWPQYSIHRGELQMLLLDAVRERLGP------------------DAVRTGHRVVGFEQ  132 (413)
T ss_pred             CCCCEEeeccCCccc-----CCCCceEEEEHHHHHHHHHHHHHhhcCC------------------cEEEcCCEEEEEEe
Confidence            345544321110000     011223568899999999998865 343                  36999999999999


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEE
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (572)
                      +++++.+.+....+|  +.++++||+||||||++|.||++++... +...+.+.+...... +...+    ..+..+.+.
T Consensus       133 ~~~~~~~~~~~~~~g--~~~~~~adlvIgADG~~S~vR~~l~~~~-~~~~~~g~~~~~~~~-~~~~~----~~~~~~~~~  204 (413)
T PRK07538        133 DADVTVVFLGDRAGG--DLVSVRGDVLIGADGIHSAVRAQLYPDE-GPPRWNGVMMWRGVT-EAPPF----LTGRSMVMA  204 (413)
T ss_pred             cCCceEEEEeccCCC--ccceEEeeEEEECCCCCHHHhhhhcCCC-CCCcccceEEEEEee-cCccc----cCCCcEEEE
Confidence            888877777632222  3457999999999999999999986332 122222222111111 11111    011111122


Q ss_pred             e-cCceEEEEEecCC-----CCeEEEEeecCCCC---CCCCCCCH-HHHHHHHHHHhCCCCCce---eE----EEecCcc
Q 008258          283 N-TEAIGVLVAHDLK-----EGEFILQVPFYPPQ---QNLEDFSP-EICEKLIFKLVGWELSDI---DV----IDIKPWV  345 (572)
Q Consensus       283 ~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~l~~~~~~~~~~~---~i----~~~~~w~  345 (572)
                      . ++...++.+....     ...+.|.++...+.   .....++. ....+++..+.++.....   ++    .....|+
T Consensus       205 g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~p  284 (413)
T PRK07538        205 GHLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEYP  284 (413)
T ss_pred             cCCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeecc
Confidence            1 1222222221110     02344444432221   11122221 122333333333322100   10    1122344


Q ss_pred             ccc-eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHH
Q 008258          346 MHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS  424 (572)
Q Consensus       346 ~~~-~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s  424 (572)
                      +.. ...++|.  .|||+|+|||||.|+|++|||+|+||+||.+|+++|+..   ...+.+|+.|+++|+|++..++..+
T Consensus       285 ~~~~~~~~~w~--~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~~~~aL~~Ye~~R~~~~~~~~~~s  359 (413)
T PRK07538        285 MVDRDPLPRWT--RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH---GDPEAALAAYEAERRPATAQIVLAN  359 (413)
T ss_pred             ccccCCCCccc--CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhHHHHHHHHHh
Confidence            432 3456776  699999999999999999999999999999999999863   3468899999999999999888776


Q ss_pred             HH
Q 008258          425 VQ  426 (572)
Q Consensus       425 ~~  426 (572)
                      ..
T Consensus       360 ~~  361 (413)
T PRK07538        360 RL  361 (413)
T ss_pred             hh
Confidence            54

>PRK08163 salicylate hydroxylase; Provisional

Probab=100.00  E-value=5.2e-38  Score=332.43  Aligned_cols=342  Identities=21%  Similarity=0.243  Sum_probs=218.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      ++.||+||||||+||++|++|++.|++|+|+||.+.+...++++.++++++++|+++ |+++.+.+.+.+...   +.+.
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~~~~~~~~~~---~~~~   78 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDAL-GVGEAARQRAVFTDH---LTMM   78 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHc-CChHHHHhhccCCcc---eEEE
Confidence            457999999999999999999999999999999998888889999999999999999 999998876655432   2222


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                      ....|+.+...+...  .+.. ..+.....+.|..|.+.|.+.+.+.+                  ++++++++++++++
T Consensus        79 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~r~~l~~~L~~~~~~~~------------------~v~~~~~~~v~~i~  137 (396)
T PRK08163         79 DAVDAEEVVRIPTGQ--AFRA-RFGNPYAVIHRADIHLSLLEAVLDHP------------------LVEFRTSTHVVGIE  137 (396)
T ss_pred             eCCCCCEEEEeccch--hHHH-hcCCcEEEEEHHHHHHHHHHHHHhcC------------------CcEEEeCCEEEEEe
Confidence            233565554433211  0000 01122346789999999999987764                  13899999999999


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhc-CCc--cccccCcceEEEEEEecCccccccccCCCceE
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GID--LVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~l-g~~--~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (572)
                      ++++++++++.   +|+    +++||+||+|||++|.+|+.+ +..  +.+...++..+    ...++....   .....
T Consensus       138 ~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~----~~~~~~~~~---~~~~~  203 (396)
T PRK08163        138 QDGDGVTVFDQ---QGN----RWTGDALIGCDGVKSVVRQSLVGDAPRVTGHVVYRAVI----DVDDMPEDL---RINAP  203 (396)
T ss_pred             cCCCceEEEEc---CCC----EEecCEEEECCCcChHHHhhccCCCCCccccEEEEEEE----eHHHCcchh---ccCcc
Confidence            88888877664   453    689999999999999999987 431  22222221111    111111111   01111


Q ss_pred             EEEEecCceEEEEEecCCCCe-EEEEeecCCCC-CC--CCCCCHHHHHHHHHHHhCCCCCceeEE----EecCccc-cce
Q 008258          279 FFIFNTEAIGVLVAHDLKEGE-FILQVPFYPPQ-QN--LEDFSPEICEKLIFKLVGWELSDIDVI----DIKPWVM-HAE  349 (572)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~----~~~~w~~-~~~  349 (572)
                      ..+..++...+..+.  ..+. +.+.+.+..+. ..  ....+.+.+   .+.+.++.+...+++    ....|.+ ...
T Consensus       204 ~~~~g~~~~~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (396)
T PRK08163        204 VLWAGPHCHLVHYPL--RGGEQYNLVVTFHSREQEEWGVKDGSKEEV---LSYFEGIHPRPRQMLDKPTSWKRWATADRE  278 (396)
T ss_pred             EEEEcCCceEEEEEe--cCCeEEEEEEEECCCCCcccccCCCCHHHH---HHHHcCCChHHHHHHhcCCceeEccccCCC
Confidence            222233332222222  2232 22222221111 11  011122222   222222221111111    0111222 223


Q ss_pred             ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      ..++|.  .|||+|+|||||.|+|+.|||+|+||+||.+|++.|...  +...+.+|+.|+++|+|++..++..+....+
T Consensus       279 ~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~  354 (396)
T PRK08163        279 PVAKWS--TGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC--DGDAEAAFALYESVRIPRTARVVLSAREMGR  354 (396)
T ss_pred             cccccc--cCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            445675  599999999999999999999999999999999999752  3446789999999999999999888876554


Q ss_pred             Hh
Q 008258          430 AA  431 (572)
Q Consensus       430 ~~  431 (572)
                      ..
T Consensus       355 ~~  356 (396)
T PRK08163        355 IY  356 (396)
T ss_pred             hh
Confidence            33

>PRK09126 hypothetical protein; Provisional

Probab=100.00  E-value=5.4e-38  Score=331.89  Aligned_cols=339  Identities=18%  Similarity=0.223  Sum_probs=221.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-----CCCCeeeeChhHHHHHHhhcchHHHHHhcC-CCccccc
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-----THPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLWR  116 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~-----~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~-~~~~~~~  116 (572)
                      ++||+||||||+||++|+.|+++|++|+|+||.+.+.     ..+++..++++++++|+++ |+++++...+ .+...+ 
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l-Gl~~~~~~~~~~~~~~~-   80 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL-GAWDRIPEDEISPLRDA-   80 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC-CChhhhccccCCccceE-
Confidence            5899999999999999999999999999999998642     2356677899999999999 9999886543 222111 


Q ss_pred             ceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHh-cCceeeccCCcccccccccccceEEecc
Q 008258          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGH  195 (572)
Q Consensus       117 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~g~  195 (572)
                        ... +..+......+..   ..   ......+.++|..|++.|++.+.+ .|+                   ++++++
T Consensus        81 --~~~-~~~~~~~~~~~~~---~~---~~~~~g~~~~~~~l~~~l~~~~~~~~g~-------------------~i~~~~  132 (392)
T PRK09126         81 --KVL-NGRSPFALTFDAR---GR---GADALGYLVPNHLIRRAAYEAVSQQDGI-------------------ELLTGT  132 (392)
T ss_pred             --EEE-cCCCCceeEeehh---hc---CCCcceEEEeHHHHHHHHHHHHhhCCCc-------------------EEEcCC
Confidence              111 1111111111100   00   001112346788899999888754 344                   899999


Q ss_pred             EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCC
Q 008258          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (572)
Q Consensus       196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (572)
                      ++++++++++++++++.   +|+    +++||+||+|||.+|.||+.+|++.......+..+...+...       ....
T Consensus       133 ~v~~~~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~  198 (392)
T PRK09126        133 RVTAVRTDDDGAQVTLA---NGR----RLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHE-------LPHH  198 (392)
T ss_pred             eEEEEEEcCCeEEEEEc---CCC----EEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEecc-------CCCC
Confidence            99999988888877764   453    689999999999999999999876543322222221111111       1112


Q ss_pred             ceEEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeE-EEecCccccceeccc
Q 008258          276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEK  353 (572)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i-~~~~~w~~~~~~a~~  353 (572)
                      ...+.++.++...++++.+  .+.+.+.+...++. ......+++.+.+.+.+.+......... .....|+.....+++
T Consensus       199 ~~~~~~~~~~~~~~~~P~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (392)
T PRK09126        199 HTAWEWFGYGQTLALLPLN--GHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAHR  276 (392)
T ss_pred             CEEEEEecCCCCeEEeECC--CCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHHH
Confidence            2334444444433333333  23444433322211 0112344555544444444322222221 122345555556778


Q ss_pred             ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc---CCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~---g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      |.  .+||+|+|||||.++|++|||+|+||+||.+|+|+|+.+++   +...+++|+.|+++|++++..++..+....+
T Consensus       277 ~~--~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~  353 (392)
T PRK09126        277 FV--AKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAA  353 (392)
T ss_pred             Hh--hcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            86  59999999999999999999999999999999999998874   2345789999999999999988887765444

>PRK06185 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-37  Score=328.37  Aligned_cols=345  Identities=21%  Similarity=0.294  Sum_probs=226.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcC-CCccccccee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLWRKFI  119 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~-~~~~~~~~~~  119 (572)
                      ..++||+||||||+|+++|+.|+++|++|+||||++.+....++..+++.++++|+++ |+++++.+.. .+...+.   
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~l-G~~~~~~~~~~~~~~~~~---   79 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDEL-GLLERFLELPHQKVRTLR---   79 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHc-CChhHHhhcccceeeeEE---
Confidence            4568999999999999999999999999999999976655568889999999999999 9999887633 2332221   


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECV  198 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~  198 (572)
                      ..  ..|......+...   ... ..+ ....+++..+.+.|.+.+.+. |+                   +++++++++
T Consensus        80 ~~--~~~~~~~~~~~~~---~~~-~~~-~~~~v~~~~l~~~L~~~~~~~~~v-------------------~i~~~~~v~  133 (407)
T PRK06185         80 FE--IGGRTVTLADFSR---LPT-PYP-YIAMMPQWDFLDFLAEEASAYPNF-------------------TLRMGAEVT  133 (407)
T ss_pred             EE--ECCeEEEecchhh---cCC-CCC-cEEEeehHHHHHHHHHHHhhCCCc-------------------EEEeCCEEE
Confidence            11  1233222222110   000 001 124578889999999988664 44                   899999999


Q ss_pred             EEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCce
Q 008258          199 SVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (572)
Q Consensus       199 ~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~  277 (572)
                      +++.+++.+. +++.. ++|   +.+++||+||+|||.+|.||+.+|++.......+..+.+.  ... .    ...+..
T Consensus       134 ~~~~~~~~v~~v~~~~-~~g---~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~--~~~-~----~~~~~~  202 (407)
T PRK06185        134 GLIEEGGRVTGVRART-PDG---PGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFR--LPR-E----PDDPES  202 (407)
T ss_pred             EEEEeCCEEEEEEEEc-CCC---cEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEe--cCC-C----CCCCcc
Confidence            9988877764 44442 233   2378999999999999999999998776555444333222  111 0    111222


Q ss_pred             EEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCC---CCcee-EEEecCccccceecc
Q 008258          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWE---LSDID-VIDIKPWVMHAEVAE  352 (572)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~---~~~~~-i~~~~~w~~~~~~a~  352 (572)
                      .+..+.++....+++.+   +.+.+.+...... ......+.+.+.+.+.+..+..   ...++ ......|++....++
T Consensus       203 ~~~~~~~~g~~~llP~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~  279 (407)
T PRK06185        203 LMGRFGPGQGLIMIDRG---DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLR  279 (407)
T ss_pred             cceEecCCcEEEEEcCC---CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccc
Confidence            33445555444444332   4444433322211 1112233444444444443221   11111 111223445556677


Q ss_pred             cccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC-CchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       353 ~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~-~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                      +|.  ++|++|+|||||.++|.+|||+|+||+||.+|+|.|+..+++. ..+.+|+.|+++|++....+...+....+.+
T Consensus       280 ~~~--~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~  357 (407)
T PRK06185        280 RWH--RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQRRL  357 (407)
T ss_pred             ccc--CCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence            786  5999999999999999999999999999999999999887543 4458999999999999988776665444433

>PRK05868 hypothetical protein; Validated

Probab=100.00  E-value=3.8e-37  Score=322.21  Aligned_cols=334  Identities=17%  Similarity=0.178  Sum_probs=209.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSV  124 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~~  124 (572)
                      ||+||||||+||++|+.|+++|++|+||||++.+...+.++.+.++++++|+++ |+++++.+.+.+.....    ..+.
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~l-Gl~~~~~~~~~~~~~~~----~~~~   77 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERM-GLLAAAQEHKTRIRGAS----FVDR   77 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhc-CCHHHHHhhccCccceE----EEeC
Confidence            899999999999999999999999999999999888888899999999999999 99999987665543221    1234


Q ss_pred             CCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeC
Q 008258          125 TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD  204 (572)
Q Consensus       125 ~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~  204 (572)
                      +|..+..........+.  . ......+.|..|.++|.+.+ ..|                   ++++++++++++++++
T Consensus        78 ~g~~~~~~~~~~~~~~~--~-~~~~~~i~R~~L~~~l~~~~-~~~-------------------v~i~~~~~v~~i~~~~  134 (372)
T PRK05868         78 DGNELFRDTESTPTGGP--V-NSPDIELLRDDLVELLYGAT-QPS-------------------VEYLFDDSISTLQDDG  134 (372)
T ss_pred             CCCEEeecccccccCCC--C-CCceEEEEHHHHHHHHHHhc-cCC-------------------cEEEeCCEEEEEEecC
Confidence            56544321110000000  0 11123456777877765533 233                   3899999999999988


Q ss_pred             CeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCcccc-ccCcceEEEEEEecCccccccccCCCceEEEEEe
Q 008258          205 QCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG-EKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN  283 (572)
Q Consensus       205 ~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  283 (572)
                      ++|++++.   +|+    ++++|+||||||++|.||+.+...... ...+.. ....+..+.   .. . ......|.+.
T Consensus       135 ~~v~v~~~---dg~----~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~-~~~~~~~~~---~~-~-~~~~~~~~~g  201 (372)
T PRK05868        135 DSVRVTFE---RAA----AREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGT-HAAIFTVPN---FL-E-LDYWQTWHYG  201 (372)
T ss_pred             CeEEEEEC---CCC----eEEeCEEEECCCCCchHHHHhcCCcccceeecce-EEEEEEcCC---CC-C-CCcceEEEec
Confidence            88888876   554    578999999999999999998432111 111111 111111111   11 1 1122223334


Q ss_pred             cCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHh---CCCCCce-eEEE-ec--Ccc-ccceeccccc
Q 008258          284 TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDI-DVID-IK--PWV-MHAEVAEKFL  355 (572)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~-~i~~-~~--~w~-~~~~~a~~~~  355 (572)
                      ++....+.+.... ......+.+............+...+.+++.+   +|....+ +.+. ..  .|. +.....++|.
T Consensus       202 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w~  280 (372)
T PRK05868        202 DSTMAGVYSARNN-TEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWS  280 (372)
T ss_pred             CCcEEEEEecCCC-CceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCCC
Confidence            4443333332211 22111111111110111112223334444443   4542221 1211 11  122 3444567886


Q ss_pred             ccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHH
Q 008258          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS  424 (572)
Q Consensus       356 ~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s  424 (572)
                        +|||+|+|||||.++|+.|||+|+||+||++||+.|+..  ..+.+++|+.||+..||+..+.+...
T Consensus       281 --~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~--~~~~~~al~~ye~~~~~~~~~~q~~~  345 (372)
T PRK05868        281 --RGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--GDDYQLGFANYHAEFHGFVERNQWLV  345 (372)
T ss_pred             --CCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhHHHHHhhhhh
Confidence              699999999999999999999999999999999999763  33578999999999888887655543

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=1.6e-37  Score=328.65  Aligned_cols=343  Identities=20%  Similarity=0.287  Sum_probs=223.3

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCC-C----CCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcc
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNK-A----FSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVD  113 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~-~----~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~  113 (572)
                      +.+||+||||||+|+++|+.|+|+   |++|+||||.. .    +...+++..++++++++|+++ |+++++.+.+.+..
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~   80 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL-GVWQALADCATPIT   80 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC-CChhhhHhhcCCcc
Confidence            458999999999999999999998   99999999953 2    122357899999999999999 99999988766543


Q ss_pred             cccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEe
Q 008258          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM  193 (572)
Q Consensus       114 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~  193 (572)
                      .+.   .. + .+. ...... ...++   ..+.....+.|..|++.|.+.+.+.+                  ++++++
T Consensus        81 ~~~---~~-~-~~~-~~~~~~-~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~------------------g~~~~~  132 (395)
T PRK05732         81 HIH---VS-D-RGH-AGFVRL-DAEDY---GVPALGYVVELHDVGQRLFALLDKAP------------------GVTLHC  132 (395)
T ss_pred             EEE---Ee-c-CCC-CceEEe-ehhhc---CCCccEEEEEhHHHHHHHHHHHhcCC------------------CcEEEc
Confidence            321   11 1 111 111000 00011   01211245778899999999886642                  238999


Q ss_pred             ccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccC
Q 008258          194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE  273 (572)
Q Consensus       194 g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~  273 (572)
                      ++++++++++++++++++.   +|.    ++++|+||+|||.+|.||+.+++........+..+...+....       .
T Consensus       133 ~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~-------~  198 (395)
T PRK05732        133 PARVANVERTQGSVRVTLD---DGE----TLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSE-------A  198 (395)
T ss_pred             CCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecC-------C
Confidence            9999999988888887764   443    6899999999999999999998776544332222222221111       0


Q ss_pred             CCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCce-eEEEecCccccceec
Q 008258          274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEVA  351 (572)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~i~~~~~w~~~~~~a  351 (572)
                      .....+..+.+.....+++.+  .+.+.+.+.+.... .....++.+...+.+.+.+++....+ +......|++....+
T Consensus       199 ~~~~~~~~~~~~g~~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  276 (395)
T PRK05732        199 HQGRAFERFTEHGPLALLPMS--DGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAYPLALVTA  276 (395)
T ss_pred             CCCEEEEeecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeecCCcceecccccch
Confidence            111122223333333333333  24433332221111 11123444555555555555433222 122233455555566


Q ss_pred             ccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCC---chhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA---PASILNTYETERKPIAEFNTALSVQNF  428 (572)
Q Consensus       352 ~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~---~~~~L~~Y~~eR~~~a~~~~~~s~~~~  428 (572)
                      ++|.  +|||+|+|||||.++|++|||+|+||+||.+|||+|+.++++..   .+.+|+.|+++|++++...+..+....
T Consensus       277 ~~~~--~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~  354 (395)
T PRK05732        277 AQQI--SHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLV  354 (395)
T ss_pred             hhhc--cCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776  69999999999999999999999999999999999998775432   357999999999999988888776555


Q ss_pred             HHh
Q 008258          429 RAA  431 (572)
Q Consensus       429 ~~~  431 (572)
                      +.+
T Consensus       355 ~~~  357 (395)
T PRK05732        355 RLF  357 (395)
T ss_pred             HHH
Confidence            443

>PRK06847 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=320.07  Aligned_cols=335  Identities=19%  Similarity=0.223  Sum_probs=220.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      ..||+||||||+||++|+.|++.|++|+|+||++.+...+.+..++++++++|+++ |+.+.+.+.+.+...+.   + .
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~-gl~~~~~~~~~~~~~~~---~-~   78 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALREL-GVLDECLEAGFGFDGVD---L-F   78 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHc-CCHHHHHHhCCCccceE---E-E
Confidence            46999999999999999999999999999999998888889999999999999999 99999888766554322   1 2


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                      +..|+.+...+...   +.....+ ....+.|..|.+.|.+.+.+.|+                   +++++++++++++
T Consensus        79 ~~~g~~~~~~~~~~---~~~~~~~-~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i~~  135 (375)
T PRK06847         79 DPDGTLLAELPTPR---LAGDDLP-GGGGIMRPALARILADAARAAGA-------------------DVRLGTTVTAIEQ  135 (375)
T ss_pred             CCCCCEEEecCccc---ccccCCC-CcccCcHHHHHHHHHHHHHHhCC-------------------EEEeCCEEEEEEE
Confidence            34566554332111   0000001 23467899999999999988776                   8999999999998


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhc-CCccccccCcceEEEEEEecCccccccccCCCceEEEE
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI  281 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~l-g~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  281 (572)
                      +++++++++.   +|+    ++++|+||+|||.+|.+|+.+ +....  ..+.+...+.......     ..... ...+
T Consensus       136 ~~~~~~v~~~---~g~----~~~ad~vI~AdG~~s~~r~~l~~~~~~--~~~~g~~~~~~~~~~~-----~~~~~-~~~~  200 (375)
T PRK06847        136 DDDGVTVTFS---DGT----TGRYDLVVGADGLYSKVRSLVFPDEPE--PEYTGQGVWRAVLPRP-----AEVDR-SLMY  200 (375)
T ss_pred             cCCEEEEEEc---CCC----EEEcCEEEECcCCCcchhhHhcCCCCC--ceeccceEEEEEecCC-----CCccc-eEEE
Confidence            8888777664   453    688999999999999999987 43221  1111111111111100     00011 1223


Q ss_pred             EecCceEEEEEecCCCCe-EEEEeecCCCCCCCCCCCHHHHHHHHHHHhC-CCCCc---e-eE----EEecCccccc-ee
Q 008258          282 FNTEAIGVLVAHDLKEGE-FILQVPFYPPQQNLEDFSPEICEKLIFKLVG-WELSD---I-DV----IDIKPWVMHA-EV  350 (572)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~---~-~i----~~~~~w~~~~-~~  350 (572)
                      ..++....+.+.  ..+. |.+... ..+  ....++++...+.+++.+. +....   + +.    .....|++.. ..
T Consensus       201 ~~~~~~~~~~p~--~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (375)
T PRK06847        201 LGPTTKAGVVPL--SEDLMYLFVTE-PRP--DNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLV  275 (375)
T ss_pred             eCCCcEEEEEcC--CCCeEEEEEec-cCc--ccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccC
Confidence            333332222222  2232 222221 111  1122344444444444332 21100   0 00    1111223322 23


Q ss_pred             cccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258          351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (572)
Q Consensus       351 a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~  430 (572)
                      ..+|.  .|||+|+|||||.++|++|||+|+||+||.+|+++|..   ....+.+|+.|+++|+|+++.+++.|.+....
T Consensus       276 ~~~~~--~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~---~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~  350 (375)
T PRK06847        276 PAPWH--RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR---HDSLEAALQAYYARRWERCRMVVEASARIGRI  350 (375)
T ss_pred             CCCcc--CCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            45575  69999999999999999999999999999999999975   34567899999999999999999998866654

>PRK07236 hypothetical protein; Provisional

Probab=100.00  E-value=3.8e-36  Score=316.94  Aligned_cols=333  Identities=15%  Similarity=0.137  Sum_probs=201.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~-~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      ..+|+||||||+||++|+.|++.|++|+|+||.+.+ ...+.+..++++++++|+++ |+.+.. ..+.+....   .+ 
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~-~~~~~~~~~---~~-   79 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEA-GVALPA-DIGVPSRER---IY-   79 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHc-CCCccc-ccccCccce---EE-
Confidence            479999999999999999999999999999998754 34566788999999999999 887654 333332211   11 


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                      .+..|+.+...             +.....+.+..|.+.|++.+                     ++++++++++|++++
T Consensus        80 ~~~~g~~~~~~-------------~~~~~~~~~~~l~~~L~~~~---------------------~~~~i~~~~~v~~i~  125 (386)
T PRK07236         80 LDRDGRVVQRR-------------PMPQTQTSWNVLYRALRAAF---------------------PAERYHLGETLVGFE  125 (386)
T ss_pred             EeCCCCEeecc-------------CCCccccCHHHHHHHHHHhC---------------------CCcEEEcCCEEEEEE
Confidence            22345443221             11112245566777766543                     234799999999999


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecC--ccccccccCCCceEE
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK--DLGDYLLNERPGMLF  279 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~  279 (572)
                      ++++++++++.   +|+    +++||+||||||++|.||+++. +... ..+.+.+.......  .+.......-.....
T Consensus       126 ~~~~~v~v~~~---~g~----~~~ad~vIgADG~~S~vR~~l~-~~~~-~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~  196 (386)
T PRK07236        126 QDGDRVTARFA---DGR----RETADLLVGADGGRSTVRAQLL-PDVR-PTYAGYVAWRGLVDEAALPPEARAALRDRFT  196 (386)
T ss_pred             ecCCeEEEEEC---CCC----EEEeCEEEECCCCCchHHHHhC-CCCC-CCcCCeEEEEEecchHHcCchhhhhcccceE
Confidence            99889888775   554    6899999999999999999872 2111 11222221111111  111000000011122


Q ss_pred             EEEecCceEEEEEecCCC-------C--eEEEEeecCCCCCC-----------------CCCCCHHHHHHHHHHHh-C-C
Q 008258          280 FIFNTEAIGVLVAHDLKE-------G--EFILQVPFYPPQQN-----------------LEDFSPEICEKLIFKLV-G-W  331 (572)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~-~-~  331 (572)
                      ++..++...+....+...       .  .|++..+...+...                 .....++.. +.+++.. + +
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~  275 (386)
T PRK07236        197 FQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVL-AELRDDAAELL  275 (386)
T ss_pred             EEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHH-HHHHHHHHHhc
Confidence            222333222222221110       1  23333332211000                 001122222 2232221 1 2


Q ss_pred             CCCceeEE----EecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHh
Q 008258          332 ELSDIDVI----DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILN  407 (572)
Q Consensus       332 ~~~~~~i~----~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~  407 (572)
                      .+.-.+++    ....|.+.....++|.  .|||+|+|||||.++|+.|||+|+||+||.+|+++|....  ...+.+|+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~--~~~~~al~  351 (386)
T PRK07236        276 APVFAELVEATAQPFVQAIFDLEVPRMA--FGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA--GDIDAALA  351 (386)
T ss_pred             CHHHHHHHhhCcCchhhhhhcccCcccc--cCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc--cchHHHHH
Confidence            11000110    1112334334456675  6999999999999999999999999999999999998642  23578999


Q ss_pred             hHHHhhhHHHHHhHHHHHHHHH
Q 008258          408 TYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       408 ~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      .|+++|+|+++.++..|.....
T Consensus       352 ~Ye~~R~~r~~~~~~~s~~~~~  373 (386)
T PRK07236        352 AWEAERLAVGAAIVARGRRLGA  373 (386)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHH
Confidence            9999999999999998875543

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=100.00  E-value=1.3e-36  Score=323.54  Aligned_cols=340  Identities=20%  Similarity=0.296  Sum_probs=209.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCc-ccccc--eee
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPV-DLWRK--FIY  120 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~-~~~~~--~~~  120 (572)
                      +|+||||||+||++|++|+++| ++|+|+||++.+...+.++.++++++++|+++ |+.+.+.+.+... ..+..  +.+
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~l-g~~~~~~~~~~~~~~~~~~~~~~~   80 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGL-GLGEAYTQVADSTPAPWQDIWFEW   80 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHc-CChhHHHHHhcCCCccCcceeEEE
Confidence            6999999999999999999998 69999999999888889999999999999999 9998887654321 11111  111


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                      .....++.+...       +   ........+.|..|.+.|++.+..                     ..++++++|+++
T Consensus        81 ~~~~~~~~~~~~-------~---~~~~~~~~i~R~~l~~~L~~~~~~---------------------~~v~~~~~v~~i  129 (414)
T TIGR03219        81 RNGSDASYLGAT-------I---APGVGQSSVHRADFLDALLKHLPE---------------------GIASFGKRATQI  129 (414)
T ss_pred             EecCccceeeee-------c---cccCCcccCCHHHHHHHHHHhCCC---------------------ceEEcCCEEEEE
Confidence            111122222110       0   001112357788888888776522                     368899999999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCC---------ccccccCcceEEEEEEecCccccc--
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI---------DLVGEKDLQKLVSVHFLSKDLGDY--  269 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~---------~~~g~~~~~~~~~~~~~~~~l~~~--  269 (572)
                      +++++++++++.   +|+    ++++|+||+|||++|.||+.+..         .+.|...++..+.    ..++...  
T Consensus       130 ~~~~~~~~v~~~---~g~----~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~----~~~~~~~~~  198 (414)
T TIGR03219       130 EEQAEEVQVLFT---DGT----EYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVD----SLQLREAYR  198 (414)
T ss_pred             EecCCcEEEEEc---CCC----EEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEee----HHHHhhhhc
Confidence            998888888775   553    68899999999999999998731         1122222222111    1111100  


Q ss_pred             ---cccCCCceEEEEEecCceEEEEEecCCCCe-EEEEeecCCCCC------CCCCC-CHHHHHHHHHHHhCCCCCceeE
Q 008258          270 ---LLNERPGMLFFIFNTEAIGVLVAHDLKEGE-FILQVPFYPPQQ------NLEDF-SPEICEKLIFKLVGWELSDIDV  338 (572)
Q Consensus       270 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~-~~~~~~~~l~~~~~~~~~~~~i  338 (572)
                         ..........++..++...+.++.  ..++ +.+..-...+..      ....+ .+....++++.+.++.+.-.++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~  276 (414)
T TIGR03219       199 AAGLDEHLVDVPQMYLGLDGHILTFPV--RQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARAL  276 (414)
T ss_pred             cccccccccccceEEEcCCCeEEEEEC--CCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHH
Confidence               000000111222334333222222  2233 221111111100      00111 1111222333333332211010


Q ss_pred             ----EEecCccccc-eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHh-cCCCchhhHhhHHHh
Q 008258          339 ----IDIKPWVMHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIAPASILNTYETE  412 (572)
Q Consensus       339 ----~~~~~w~~~~-~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~-~g~~~~~~L~~Y~~e  412 (572)
                          .....|.+.. ...++|.  +|||+|+|||||.|+|+.|||+|+||+||.+|++.|.... .+...+.+|+.|+++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~w~--~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~  354 (414)
T TIGR03219       277 LECIPAPTLWALHDLAELPGYV--HGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDV  354 (414)
T ss_pred             HHhCCCCCceeeeeccccccee--eCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHH
Confidence                1112343322 2346675  6999999999999999999999999999999999998753 344568899999999


Q ss_pred             hhHHHHHhHHHHHHHHHHh
Q 008258          413 RKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       413 R~~~a~~~~~~s~~~~~~~  431 (572)
                      |+|++..+++.|....+..
T Consensus       355 R~~r~~~~~~~s~~~~~~~  373 (414)
T TIGR03219       355 RRPRACRVQRTSREAGELY  373 (414)
T ss_pred             HhHHHHHHHHHHHHHHHHh
Confidence            9999999999998766543

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=100.00  E-value=3.3e-35  Score=320.16  Aligned_cols=353  Identities=18%  Similarity=0.229  Sum_probs=210.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCC---CeeeeChhHHHHHHhhcc--hHHHHHhcCCCccc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHP---QAHFINNRYALVFRKLDG--LAEEIERSQPPVDL  114 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~-~~~~---~a~~l~~rt~e~l~~l~G--l~~~l~~~~~~~~~  114 (572)
                      ....+|+||||||+||++|++|+|+|++|+||||++.. ...+   +++.|+++++++|+.+ |  +.+++.+.+.....
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~L-Gl~~~e~l~~~g~~~~~  157 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAI-DIDVAEQVMEAGCITGD  157 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHc-CcchHHHHHhhcCcccc
Confidence            45689999999999999999999999999999998643 2222   5688999999999999 7  46777766543211


Q ss_pred             ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (572)
Q Consensus       115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g  194 (572)
                       +...+.....|......+...... .. ..+ ....++|..|+++|.+.+   +.                  ..++++
T Consensus       158 -~i~~~~d~~~G~~~~~~~~~~~~~-~~-g~p-~~~~I~R~~L~~~L~~al---g~------------------~~i~~g  212 (668)
T PLN02927        158 -RINGLVDGISGSWYVKFDTFTPAA-SR-GLP-VTRVISRMTLQQILARAV---GE------------------DVIRNE  212 (668)
T ss_pred             -eeeeeeecCCCceEeecccccccc-cc-CCC-eEEEEeHHHHHHHHHhhC---CC------------------CEEEcC
Confidence             111122223454443333221100 00 011 124688999999997654   21                  257899


Q ss_pred             cEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhc-CCccccccCcceEEEEEEecCccccccccC
Q 008258          195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNE  273 (572)
Q Consensus       195 ~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~l-g~~~~g~~~~~~~~~~~~~~~~l~~~~~~~  273 (572)
                      ++|+++++++++|++++.   +|+    ++++|+||||||++|.+|+.+ +..-   ..+.+.+.+..........  ..
T Consensus       213 ~~V~~I~~~~d~VtV~~~---dG~----ti~aDlVVGADG~~S~vR~~l~g~~~---~~~sG~~~~rgi~~~~p~~--~~  280 (668)
T PLN02927        213 SNVVDFEDSGDKVTVVLE---NGQ----RYEGDLLVGADGIWSKVRNNLFGRSE---ATYSGYTCYTGIADFIPAD--IE  280 (668)
T ss_pred             CEEEEEEEeCCEEEEEEC---CCC----EEEcCEEEECCCCCcHHHHHhcCCCC---CcccceEEEEEEcCCCccc--cc
Confidence            999999999999887765   553    578999999999999999987 3221   1111222111111100000  00


Q ss_pred             CCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE------ecCcccc
Q 008258          274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID------IKPWVMH  347 (572)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~------~~~w~~~  347 (572)
                      .... ..+..+..  .++..+...+.+.+......+... .+-.+....++.+.+-+|.+...+++.      ...|.+.
T Consensus       281 ~~~~-~~~~G~~~--~~v~~~v~~g~~~~~~f~~~p~~~-~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iy  356 (668)
T PLN02927        281 SVGY-RVFLGHKQ--YFVSSDVGGGKMQWYAFHEEPAGG-ADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIY  356 (668)
T ss_pred             ccce-EEEEcCCe--EEEEEcCCCCeEEEEEEEECCccc-cccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEE
Confidence            1111 11222222  222223233433332211111111 011111222222222334321111111      1123332


Q ss_pred             ce-ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcC-------CCchhhHhhHHHhhhHHHHH
Q 008258          348 AE-VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-------IAPASILNTYETERKPIAEF  419 (572)
Q Consensus       348 ~~-~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g-------~~~~~~L~~Y~~eR~~~a~~  419 (572)
                      .. ...+|.  +|||+|+|||||.|+|+.|||+|+||+||+.|+++|....++       ...+.+|+.|+++|+|++..
T Consensus       357 d~~p~~~W~--~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~  434 (668)
T PLN02927        357 DRSPGFTWG--KGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAI  434 (668)
T ss_pred             eccCCCccc--cCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence            22 223565  699999999999999999999999999999999999886532       23568999999999999999


Q ss_pred             hHHHHHHHHHHhcccccc
Q 008258          420 NTALSVQNFRAAMEVPSA  437 (572)
Q Consensus       420 ~~~~s~~~~~~~~~~~~~  437 (572)
                      ++..+.....+.......
T Consensus       435 i~~~ar~a~~~~~~~~~y  452 (668)
T PLN02927        435 IHAMARMAAIMASTYKAY  452 (668)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888876655555444433

>PLN02985 squalene monooxygenase

Probab=100.00  E-value=1.6e-34  Score=312.34  Aligned_cols=343  Identities=17%  Similarity=0.163  Sum_probs=208.5

Q ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCC-Cccccc
Q 008258           38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLWR  116 (572)
Q Consensus        38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~-~~~~~~  116 (572)
                      ++....+||+||||||+|+++|++|++.|++|+|+||.+.......+..++++++++|+++ |+++++..... +..   
T Consensus        38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~L-Gl~d~l~~~~~~~~~---  113 (514)
T PLN02985         38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKL-GLEDCLEGIDAQKAT---  113 (514)
T ss_pred             cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHc-CCcchhhhccCcccc---
Confidence            4456678999999999999999999999999999999876555667889999999999999 99999876532 222   


Q ss_pred             ceeeeeCCCCCeee-eecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258          117 KFIYCTSVTGPILG-SVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (572)
Q Consensus       117 ~~~~~~~~~G~~~~-~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~  195 (572)
                      .+...  .+|+... ..+.. ...+   ........++|.+|.+.|++++.+.+                  +++++.+ 
T Consensus       114 ~~~v~--~~g~~~~~~~~~~-~~~~---~~~~~g~~i~r~~l~~~L~~~a~~~~------------------~V~i~~g-  168 (514)
T PLN02985        114 GMAVY--KDGKEAVAPFPVD-NNNF---PYEPSARSFHNGRFVQRLRQKASSLP------------------NVRLEEG-  168 (514)
T ss_pred             cEEEE--ECCEEEEEeCCCC-CcCC---CcccceeeeecHHHHHHHHHHHHhCC------------------CeEEEee-
Confidence            22221  2444321 11100 0000   00111246788999999999987753                  2367665 


Q ss_pred             EEEEEeeeCCe-EEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCc-ceEEEEEEecCccccccccC
Q 008258          196 ECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDL-QKLVSVHFLSKDLGDYLLNE  273 (572)
Q Consensus       196 ~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~-~~~~~~~~~~~~l~~~~~~~  273 (572)
                      +++++.++++. +.|++.+. +|  ++.+++||+||+|||++|.+|++++........+ ..++     ..+..    ..
T Consensus       169 tvv~li~~~~~v~gV~~~~~-dG--~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~-----~~~~~----~~  236 (514)
T PLN02985        169 TVKSLIEEKGVIKGVTYKNS-AG--EETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI-----SKNCR----LE  236 (514)
T ss_pred             eEEEEEEcCCEEEEEEEEcC-CC--CEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEE-----Ecccc----CC
Confidence            46666554443 24555422 34  3456889999999999999999997643321111 1111     11100    11


Q ss_pred             CCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHH------------HHHHHHHHh--CCCCCceeEE
Q 008258          274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEI------------CEKLIFKLV--GWELSDIDVI  339 (572)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~--~~~~~~~~i~  339 (572)
                      .+...+.++.+....++.+.......+.+.++...    .+..+...            +.+.+++.+  ++... .++.
T Consensus       237 ~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~-~~~~  311 (514)
T PLN02985        237 EPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDN----IPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEG-AHIK  311 (514)
T ss_pred             CCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCC----CCCcChhhHHHHHHhccccccCHHHHHHHHhhcccc-ccee
Confidence            23333444444433333333221112222333211    01111111            111222221  11111 1121


Q ss_pred             EecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHh---cCCCchhhHhhHHHhhhHH
Q 008258          340 DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL---KDIAPASILNTYETERKPI  416 (572)
Q Consensus       340 ~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~---~g~~~~~~L~~Y~~eR~~~  416 (572)
                      ....+   ......+.  ++|++|+|||||.++|.+|||||+|++||..|++.|...-   +..+..++|++|+.+|+++
T Consensus       312 ~~p~~---~l~~~~~~--~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r  386 (514)
T PLN02985        312 VVPTK---RMSATLSD--KKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM  386 (514)
T ss_pred             ecCcc---cccccccC--CCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc
Confidence            11111   11222332  5899999999999999999999999999999999997642   1223468999999999999


Q ss_pred             HHHhHHHHHHHHHHh
Q 008258          417 AEFNTALSVQNFRAA  431 (572)
Q Consensus       417 a~~~~~~s~~~~~~~  431 (572)
                      +..++.+|...++.+
T Consensus       387 ~~~i~~la~al~~~f  401 (514)
T PLN02985        387 SATVNTLGNAFSQVL  401 (514)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999998887655

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=2.6e-35  Score=294.15  Aligned_cols=337  Identities=21%  Similarity=0.233  Sum_probs=198.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      .+|+|||||++||++|++|+|.|++|+|+|++..++..++++.+.-+++++|+.+ |+.+.+++.+.|...+.   -.+.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai-~~~e~i~~~gip~~~~v---~~~~   78 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAI-GLKEQIREQGIPLGGRV---LIHG   78 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHc-ccHHHHHHhcCccccee---eeec
Confidence            5899999999999999999999999999999999988899999998999999999 89999999998875442   3345


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc------EE
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH------EC  197 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~------~v  197 (572)
                      .+|++..++....+.++        ...+.|..+.+.++..+...                    ..|+|+.      ..
T Consensus        79 ~sg~~~~~~~~~~~~~~--------i~r~~~r~ll~~lL~~a~~~--------------------~~ikf~~~~~~~~~~  130 (420)
T KOG2614|consen   79 DSGKEVSRILYGEPDEY--------ILRINRRNLLQELLAEALPT--------------------GTIKFHSNLSCTSKD  130 (420)
T ss_pred             CCCCeeEecccCCchHH--------HHHHHHHHHHHHHHHhhcCC--------------------Ceeeccccccccccc
Confidence            67777766543332221        23444555554444444332                    3566664      33


Q ss_pred             EEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccc--cccCCC
Q 008258          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDY--LLNERP  275 (572)
Q Consensus       198 ~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~  275 (572)
                      ..++.......+++.   +|+    ++++|++|||||++|.||+.|+........++.+.++.|........  .....+
T Consensus       131 ~~~~~~~~~~~v~l~---~g~----~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~  203 (420)
T KOG2614|consen  131 VEIETLGKKLVVHLS---DGT----TVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYG  203 (420)
T ss_pred             ceeeecccccceecC---CCc----EEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccC
Confidence            333333334444444   454    79999999999999999999987655555555555554443321110  001122


Q ss_pred             ceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHH---HHHH---hCCCCC-ceeEEEecCccccc
Q 008258          276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKL---IFKL---VGWELS-DIDVIDIKPWVMHA  348 (572)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~---~~~~~~-~~~i~~~~~w~~~~  348 (572)
                      +.++.+..+....+....-...-.+.+..++..++. ......+....+   +.++   .+.+.. .-.+....+|++- 
T Consensus       204 ~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~-l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i-  281 (420)
T KOG2614|consen  204 NGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEK-LKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLI-  281 (420)
T ss_pred             CeEEEcccCCceEEEEEeecCCcccccccCcCCHHH-HhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCee-
Confidence            333333333222111111101111111111111110 011111111111   1111   121111 1123344455432 


Q ss_pred             eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258          349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF  428 (572)
Q Consensus       349 ~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~  428 (572)
                        ..+.+  +++|+|+|||||+|.|+.|||+|+|++|+.+||.+|+...+.  .+..+.+|++  .+....+.+.++.++
T Consensus       282 --~~~~s--~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d--~s~~~~~~s~--~~e~~~~ie~a~~~Y  353 (420)
T KOG2614|consen  282 --SVKCS--PGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND--VSLAGEEYSR--ENESHAIIELAMYSY  353 (420)
T ss_pred             --eeccC--CCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc--hhccccceec--ccchhHHHHHHHHHH
Confidence              22222  579999999999999999999999999999999999998653  3444555554  222233344444444


Q ss_pred             H
Q 008258          429 R  429 (572)
Q Consensus       429 ~  429 (572)
                      .
T Consensus       354 ~  354 (420)
T KOG2614|consen  354 K  354 (420)
T ss_pred             H
Confidence            3

>PTZ00367 squalene epoxidase; Provisional

Probab=100.00  E-value=4.2e-33  Score=302.53  Aligned_cols=342  Identities=15%  Similarity=0.100  Sum_probs=200.3

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~-~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      .++||+||||||+|+++|++|+++|++|+|+||.+.. .....+..++++++++|+++ |+++++...+.+...+.  + 
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~L-GL~d~l~~i~~~~~~~~--v-  107 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKEL-GMEECAEGIGMPCFGYV--V-  107 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHC-CChhhHhhcCcceeeeE--E-
Confidence            4589999999999999999999999999999998622 22345668999999999999 99999887766643221  1 


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                       .+.+|+.+ ..+.      .   .......+.+..+.+.|.+.+...-                .++++++. .+++++
T Consensus       108 -~~~~G~~~-~i~~------~---~~~~g~~~~rg~~~~~Lr~~a~~~~----------------~~~V~v~~-~~v~~l  159 (567)
T PTZ00367        108 -FDHKGKQV-KLPY------G---AGASGVSFHFGDFVQNLRSHVFHNC----------------QDNVTMLE-GTVNSL  159 (567)
T ss_pred             -EECCCCEE-EecC------C---CCCceeEeEHHHHHHHHHHHHHhhc----------------CCCcEEEE-eEEEEe
Confidence             12234433 1111      0   0111234567788888888772210                02335643 467766


Q ss_pred             eeeCCe-----EEEEEEeccCC------------------ceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEE
Q 008258          201 SATDQC-----INVIASFLKEG------------------KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV  257 (572)
Q Consensus       201 ~~~~~~-----v~v~~~~~~~g------------------~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~  257 (572)
                      .++++.     ..|++...+.+                  ....++++||+||||||++|.+|++++.......+.+.+.
T Consensus       160 ~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~  239 (567)
T PTZ00367        160 LEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFV  239 (567)
T ss_pred             ccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEE
Confidence            443321     22333321100                  0012478999999999999999999975432222233332


Q ss_pred             EEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCC-CCCC-----------CHHHHHHHH
Q 008258          258 SVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN-LEDF-----------SPEICEKLI  325 (572)
Q Consensus       258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~~l  325 (572)
                      ........      .+.+...+.++.++...++++..  .++..+.+.+..+... ..+.           .++.+.+.+
T Consensus       240 g~~~~~~~------lp~~~~~~v~~g~~gpi~~yPl~--~~~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f  311 (567)
T PTZ00367        240 GLVLKNVR------LPKEQHGTVFLGKTGPILSYRLD--DNELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESF  311 (567)
T ss_pred             EEEEeccc------CCCCCeeEEEEcCCceEEEEEcC--CCeEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHH
Confidence            22221111      11233334445555444444443  3333222222111100 0000           011111111


Q ss_pred             HHHhCCCCCceeEEEecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc--C--C-
Q 008258          326 FKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK--D--I-  400 (572)
Q Consensus       326 ~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~--g--~-  400 (572)
                      .+.+.. ...+     ..|+.....+..+.  .+|++|+|||||.++|.+|||||+||+||..|+++|..+.+  +  . 
T Consensus       312 ~~~l~~-~~~l-----~~~p~~~~p~~~~~--~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~  383 (567)
T PTZ00367        312 IRASKD-TKRI-----RSMPNARYPPAFPS--IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQN  383 (567)
T ss_pred             HHhhcc-cCCe-----EEeeHhhCCCccCC--CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCch
Confidence            111110 0111     12333222233443  68999999999999999999999999999999999986431  1  1 


Q ss_pred             ---CchhhHh----hHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          401 ---APASILN----TYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       401 ---~~~~~L~----~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                         +.+.+|+    +|+.+|++++..+...+...++.+
T Consensus       384 d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf  421 (567)
T PTZ00367        384 EMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVF  421 (567)
T ss_pred             hHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence               1256677    999999999999888887766554

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.97  E-value=3.6e-30  Score=291.42  Aligned_cols=328  Identities=20%  Similarity=0.257  Sum_probs=200.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcc--hHHHHHhcCCCcccccceee
Q 008258           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDG--LAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~G--l~~~l~~~~~~~~~~~~~~~  120 (572)
                      +|+||||||+||++|+.|+++  |++|+|+||++.....+.++.+++++++.|+.+ +  +.+.+......   |.....
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~-~~~~~~~~~~~~~~---~~~~~~   77 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAA-DPVSAAAIGDAFNH---WDDIDV   77 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhc-CHHHHHHHHHhccc---CCceEE
Confidence            799999999999999999998  899999999998877788999999999999877 5  33444332211   211111


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                      .  ..|....             .....+..+.|..|.++|++++.+.|+                   +++++++++++
T Consensus        78 ~--~~g~~~~-------------~~g~~~~~i~R~~L~~~L~e~a~~~GV-------------------~i~~g~~v~~i  123 (765)
T PRK08255         78 H--FKGRRIR-------------SGGHGFAGIGRKRLLNILQARCEELGV-------------------KLVFETEVPDD  123 (765)
T ss_pred             E--ECCEEEE-------------ECCeeEecCCHHHHHHHHHHHHHHcCC-------------------EEEeCCccCch
Confidence            1  1222211             011223568899999999999999887                   88888887655


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEE
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (572)
                      ++.                   .+++|+||||||.+|.||+++...+..................   .     .....+
T Consensus       124 ~~~-------------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~---~-----~~~~~~  176 (765)
T PRK08255        124 QAL-------------------AADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHK---V-----FDAFTF  176 (765)
T ss_pred             hhh-------------------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCC---c-----ccceeE
Confidence            320                   1359999999999999999864322211100000000000000   0     000111


Q ss_pred             EEecCceEE----EEEecCCCCeEEEEeecCC-CCCCCCCCCHHHHHHHHHHHh-CCCCCceeEEE------ecCccc-c
Q 008258          281 IFNTEAIGV----LVAHDLKEGEFILQVPFYP-PQQNLEDFSPEICEKLIFKLV-GWELSDIDVID------IKPWVM-H  347 (572)
Q Consensus       281 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~i~~------~~~w~~-~  347 (572)
                      .+.+...++    ..........|.+.++... .......++++...+.+.+.+ ++.+ ...++.      ...|.. .
T Consensus       177 ~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~-~~~li~~~~~~~~~~w~~~~  255 (765)
T PRK08255        177 AFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLD-GHPLMSNASHLRGSAWINFP  255 (765)
T ss_pred             EEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcC-CCcccccccccccceeeecc
Confidence            111111111    1111111122333322000 001223445554455555443 2221 112211      122543 3


Q ss_pred             ceecccccccCCc----EEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHH
Q 008258          348 AEVAEKFLCCYNQ----IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL  423 (572)
Q Consensus       348 ~~~a~~~~~~~gr----V~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~  423 (572)
                      ....++|.  .||    |+|+|||||.++|+.|||+|+||+||..|++.|...  +...+.+|+.|+++|+++++.+++.
T Consensus       256 ~~~~~~w~--~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~--~~~~~~al~~ye~~R~~r~~~~~~~  331 (765)
T PRK08255        256 RVVCERWV--HWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEH--PGDLPAALAAYEEERRVEVLRIQNA  331 (765)
T ss_pred             eeccCCCc--cCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567776  588    999999999999999999999999999999999864  2256889999999999999999998


Q ss_pred             HHHHHHHhcccccccCCCc
Q 008258          424 SVQNFRAAMEVPSALGLDP  442 (572)
Q Consensus       424 s~~~~~~~~~~~~~~g~~~  442 (572)
                      |..+.+.+.......+.++
T Consensus       332 s~~~~~~~~~~~~~~~~~~  350 (765)
T PRK08255        332 ARNSTEWFENVERYAGLEP  350 (765)
T ss_pred             HHHhCceeeecchhhCCCH
Confidence            8876655544444445443

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.97  E-value=2.3e-28  Score=257.70  Aligned_cols=316  Identities=16%  Similarity=0.190  Sum_probs=191.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      +||+||||||||+++|+.|++.|++|+|+||+. +...+++..++++   +++.+ |+.+++....     +..... .+
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~~---~l~~l-~i~~~~~~~~-----~~~~~~-~~   69 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPPC---LIEEF-DIPDSLIDRR-----VTQMRM-IS   69 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCHh---hhhhc-CCchHHHhhh-----cceeEE-Ec
Confidence            699999999999999999999999999999983 3345677888875   45666 7776655432     111111 12


Q ss_pred             CCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                      .+|..+. .+.         ..+.. ...++|..|++.|.+++.+.|+                   +++.+ +++++..
T Consensus        70 ~~~~~~~-~~~---------~~~~~~~~~~~r~~fd~~L~~~a~~~G~-------------------~v~~~-~v~~v~~  119 (388)
T TIGR02023        70 PSRVPIK-VTI---------PSEDGYVGMVRREVFDSYLRERAQKAGA-------------------ELIHG-LFLKLER  119 (388)
T ss_pred             CCCceee-ecc---------CCCCCceEeeeHHHHHHHHHHHHHhCCC-------------------EEEee-EEEEEEE
Confidence            2332211 000         00111 2358999999999999998887                   66655 5888988


Q ss_pred             eCCeEEEEEEeccC-CceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEE
Q 008258          203 TDQCINVIASFLKE-GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI  281 (572)
Q Consensus       203 ~~~~v~v~~~~~~~-g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  281 (572)
                      +++++++++...+. ..++..+++||+||+|||.+|.||+.++++....  +...+..++...+. ..  ...+....++
T Consensus       120 ~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~-~~--~~~~~~~~~~  194 (388)
T TIGR02023       120 DRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDD-KM--AYYEELADVY  194 (388)
T ss_pred             cCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCch-hc--ccCCCeEEEE
Confidence            88888877762100 0112347999999999999999999998763211  11111112211110 00  1112222222


Q ss_pred             E----ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceeccccccc
Q 008258          282 F----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC  357 (572)
Q Consensus       282 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~  357 (572)
                      +    .|+.++++++..   +...+.+...     ....+.+.+.+.+.+..+...  .+........+.....++|.  
T Consensus       195 ~~~~~~p~~y~wv~P~~---~~~~vg~~~~-----~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~ip~~~~~~~~--  262 (388)
T TIGR02023       195 YGGEVSPDFYGWVFPKG---DHIAVGTGTG-----THGFDAKQLQANLRRRAGLDG--GQTIRREAAPIPMKPRPRWD--  262 (388)
T ss_pred             ECCCcCCCceEEEeeCC---CeeEEeEEEC-----CCCCCHHHHHHHHHHhhCCCC--ceEeeeeeEecccccccccc--
Confidence            2    233344433332   2222222111     111234444445554433211  12222111122222334554  


Q ss_pred             CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHH
Q 008258          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE  418 (572)
Q Consensus       358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~  418 (572)
                      .+|++|+|||||.++|.+|+|+++||+++..+|+.|++.+++. ....|+.|+++.+..-.
T Consensus       263 ~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~-~~~~L~~Y~~~~~~~~~  322 (388)
T TIGR02023       263 FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG-DATDLRHYERKFMKLYG  322 (388)
T ss_pred             CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999987643 35779999999886643

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.97  E-value=5.5e-28  Score=257.49  Aligned_cols=321  Identities=14%  Similarity=0.150  Sum_probs=187.2

Q ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccc
Q 008258           38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK  117 (572)
Q Consensus        38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~  117 (572)
                      +|...++||+||||||||+++|+.|+++|++|+|+||++. ...+++..++.   +.++.+ |+.+.+....  ...+  
T Consensus        34 ~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~l-gl~~~~~~~~--i~~~--  104 (450)
T PLN00093         34 KLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEF-DLPLDIIDRK--VTKM--  104 (450)
T ss_pred             CcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhh-cCcHHHHHHH--hhhh--
Confidence            4556679999999999999999999999999999999864 44567877865   556667 7776654421  1111  


Q ss_pred             eeeeeCCCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccE
Q 008258          118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE  196 (572)
Q Consensus       118 ~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~  196 (572)
                       .. .+..+..+. ..        ....+.. ...++|..|++.|.+++.+.|+                   +++.+ +
T Consensus       105 -~~-~~p~~~~v~-~~--------~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga-------------------~~~~~-~  153 (450)
T PLN00093        105 -KM-ISPSNVAVD-IG--------KTLKPHEYIGMVRREVLDSFLRERAQSNGA-------------------TLING-L  153 (450)
T ss_pred             -eE-ecCCceEEE-ec--------ccCCCCCeEEEecHHHHHHHHHHHHHHCCC-------------------EEEec-e
Confidence             11 112222111 00        0011111 2458999999999999999887                   66655 4


Q ss_pred             EEEEeee---CCeEEEEEEeccC--CceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccc
Q 008258          197 CVSVSAT---DQCINVIASFLKE--GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL  271 (572)
Q Consensus       197 v~~v~~~---~~~v~v~~~~~~~--g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~  271 (572)
                      +++++..   ++.+.+++...+.  +.++..+++||+||||||++|.||+.++...   ......+...+...+.  . .
T Consensus       154 v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~---~~~~~~~~~~~~~~~~--~-~  227 (450)
T PLN00093        154 FTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGD---YDYAIAFQERIKIPDD--K-M  227 (450)
T ss_pred             EEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCC---cceeEEEEEEEeCChh--h-c
Confidence            6666532   3456666652110  0112347999999999999999999998642   1111111111111110  0 0


Q ss_pred             cCCCceEEEEE----ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEe--cCcc
Q 008258          272 NERPGMLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDI--KPWV  345 (572)
Q Consensus       272 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~--~~w~  345 (572)
                      ...+....+++    .|+.++++++..   +...+.+....     ...+.....+.+++.........++...  .+++
T Consensus       228 ~~~~~~~~~~~g~~~~p~~Y~WifP~g---~~~~VG~g~~~-----~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ip  299 (450)
T PLN00093        228 EYYEDLAEMYVGDDVSPDFYGWVFPKC---DHVAVGTGTVV-----NKPAIKKYQRATRNRAKDKIAGGKIIRVEAHPIP  299 (450)
T ss_pred             cccCCeEEEEeCCCCCCCceEEEEECC---CcEEEEEEEcc-----CCCChHHHHHHHHHHhhhhcCCCeEEEEEEEEcc
Confidence            01112222222    244455555443   12222221111     1112222333333222211111222222  2333


Q ss_pred             ccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC---CchhhHhhHHHhhhHH
Q 008258          346 MHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKPI  416 (572)
Q Consensus       346 ~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~---~~~~~L~~Y~~eR~~~  416 (572)
                      +  ....++.  .+|++|+|||||.++|.+|+|++.||.++..+|+.++..++..   .....|+.|++..+..
T Consensus       300 ~--~~~~~~~--~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~  369 (450)
T PLN00093        300 E--HPRPRRV--RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKK  369 (450)
T ss_pred             c--cccccee--CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH
Confidence            3  2334554  5899999999999999999999999999999999999877432   2356799999976654

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.97  E-value=1.5e-28  Score=249.13  Aligned_cols=289  Identities=18%  Similarity=0.228  Sum_probs=180.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      +||+||||||+||++|+.|++.|++|+|+||++.+....++..+.+++++.+... +... +.       .+....+ ..
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~-------~~~~~~~-~~   70 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLP-LELI-VN-------LVRGARF-FS   70 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCC-chhh-hh-------heeeEEE-Ec
Confidence            5999999999999999999999999999999988776778888999999988765 4311 11       1111111 12


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                      ..++.+. ..          ........++|..|++.|.+.+.+.|+                   ++++++++++++.+
T Consensus        71 ~~~~~~~-~~----------~~~~~~~~i~r~~l~~~l~~~~~~~gv-------------------~~~~~~~v~~~~~~  120 (295)
T TIGR02032        71 PNGDSVE-IP----------IETELAYVIDRDAFDEQLAERAQEAGA-------------------ELRLGTTVLDVEIH  120 (295)
T ss_pred             CCCcEEE-ec----------cCCCcEEEEEHHHHHHHHHHHHHHcCC-------------------EEEeCcEEeeEEEe
Confidence            2333221 10          011224568999999999999988876                   89999999999988


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEEe
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN  283 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  283 (572)
                      ++++++++.   ++   ..++++|+||+|||.+|.+|+.+++........ ......+..+. .    ...+.....++.
T Consensus       121 ~~~~~~~~~---~~---~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~----~~~~~~~~~~~~  188 (295)
T TIGR02032       121 DDRVVVIVR---GG---EGTVTAKIVIGADGSRSIVAKKLGLRKEPRELG-VAARAEVEMPD-E----EVDEDFVEVYID  188 (295)
T ss_pred             CCEEEEEEc---Cc---cEEEEeCEEEECCCcchHHHHhcCCCCCCccee-eEEEEEEecCC-c----ccCcceEEEEcC
Confidence            888777664   22   237899999999999999999987654221111 11122222211 0    011111111111


Q ss_pred             ----cCceEEEEEecCCCCeEEEEeecCCCCCCCCCCC-HHHHHHHHHHHhCCCCCceeEEEecCccccc-eeccccccc
Q 008258          284 ----TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVIDIKPWVMHA-EVAEKFLCC  357 (572)
Q Consensus       284 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~-~~a~~~~~~  357 (572)
                          +....++++.  ..+.+.+.+...++.   ...+ .+.+.+.+.....  ....++.+...|.+.. ....++.  
T Consensus       189 ~~~~~~~~~~~~P~--~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~--  259 (295)
T TIGR02032       189 RGISPGGYGWVFPK--GDGTANVGVGSRSAE---EGEDLKKYLKDFLARRPE--LKDAETVEVIGAPIPIGRPDDKTV--  259 (295)
T ss_pred             CCcCCCceEEEEeC--CCCeEEEeeeeccCC---CCCCHHHHHHHHHHhCcc--cccCcEEeeeceeeccCCCCCccc--
Confidence                1223333333  334455443322221   1122 2333444433211  1223344433443332 2334454  


Q ss_pred             CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHH
Q 008258          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI  393 (572)
Q Consensus       358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~L  393 (572)
                      ++||+|+|||||.++|..|||||+||+||..+|+.|
T Consensus       260 ~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~  295 (295)
T TIGR02032       260 RGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI  295 (295)
T ss_pred             cCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence            699999999999999999999999999999998764

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK11445 putative oxidoreductase; Provisional

Probab=99.96  E-value=1.6e-27  Score=247.77  Aligned_cols=308  Identities=20%  Similarity=0.269  Sum_probs=178.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~----~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      +||+||||||+|+++|+.|++. ++|+|+||++...    ..+++..++++++++|+++ |+.........+.       
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~l-gl~~~~~~~~~~~-------   72 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKD-GLTLPKDVIANPQ-------   72 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHc-CCCCCcceeeccc-------
Confidence            6999999999999999999999 9999999998543    3457889999999999999 8742111000000       


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                            ......++....  ... .....++.++|..|++.|.+.+ +.|+                   ++++++++++
T Consensus        73 ------~~~~~~~~~~~~--~~~-~~~~~~~~i~R~~~~~~L~~~~-~~gv-------------------~v~~~~~v~~  123 (351)
T PRK11445         73 ------IFAVKTIDLANS--LTR-NYQRSYINIDRHKFDLWLKSLI-PASV-------------------EVYHNSLCRK  123 (351)
T ss_pred             ------cceeeEeccccc--chh-hcCCCcccccHHHHHHHHHHHH-hcCC-------------------EEEcCCEEEE
Confidence                  000011111000  000 0112245689999999988854 4455                   8999999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (572)
                      ++++++++.+++.  ++|+  ..+++||+||+|||++|.+|++++..... ..+.. +..++....       ..+ ...
T Consensus       124 i~~~~~~~~v~~~--~~g~--~~~i~a~~vV~AdG~~S~vr~~l~~~~~~-~~~~~-~~~~~~~~~-------~~~-~~~  189 (351)
T PRK11445        124 IWREDDGYHVIFR--ADGW--EQHITARYLVGADGANSMVRRHLYPDHQI-RKYVA-IQQWFAEKH-------PVP-FYS  189 (351)
T ss_pred             EEEcCCEEEEEEe--cCCc--EEEEEeCEEEECCCCCcHHhHHhcCCCch-hhEEE-EEEEecCCC-------CCC-Ccc
Confidence            9998888887763  2442  34689999999999999999998643211 11111 111111110       001 111


Q ss_pred             EEEecCc-eEEEEEecCCCCeEEEEeecCCCCCCCCCCCHH---HHHHHHHHHhCCCCCceeEEEecCccccceeccccc
Q 008258          280 FIFNTEA-IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE---ICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFL  355 (572)
Q Consensus       280 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~  355 (572)
                      .+++++. .++.+..+. .+.+.+...+ +.     .-..+   .+.+.+.+ .+...... +.....+.+.......+.
T Consensus       190 ~~f~~~~~~~~~W~~p~-~~~~~~g~~~-~~-----~~~~~~~~~l~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  260 (351)
T PRK11445        190 CIFDNEITDCYSWSISK-DGYFIFGGAY-PM-----KDGRERFETLKEKLSA-FGFQFGKP-VKTEACTVLRPSRWQDFV  260 (351)
T ss_pred             eEEeccCCCceEEEeCC-CCcEEecccc-cc-----cchHHHHHHHHHHHHh-cccccccc-cccccccccCcccccccc
Confidence            1222221 111111111 1122111000 00     01111   12222222 22211111 001111111111122232


Q ss_pred             ccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHH
Q 008258          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA  417 (572)
Q Consensus       356 ~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a  417 (572)
                      ..++||+|||||||.++|++|+|+|.||.|+..|++.|.+..     ...|+.|++..+...
T Consensus       261 ~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~-----~~~~~~y~~~~~~~~  317 (351)
T PRK11445        261 CGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP-----EKLNTAYWRKTRKLR  317 (351)
T ss_pred             cCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc-----cchHHHHHHHHHHHH
Confidence            224899999999999999999999999999999999997532     557999999887665

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.96  E-value=2.6e-26  Score=242.36  Aligned_cols=314  Identities=16%  Similarity=0.157  Sum_probs=180.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      +||+||||||+|+++|+.|+++|++|+|+||++.. ..+++..++.   +.|+++ |+.+.+....  .   ..... .+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~-~~~cg~~i~~---~~l~~~-g~~~~~~~~~--i---~~~~~-~~   69 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN-AKPCGGAIPL---CMVDEF-ALPRDIIDRR--V---TKMKM-IS   69 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC-CCCccccccH---hhHhhc-cCchhHHHhh--h---ceeEE-ec
Confidence            58999999999999999999999999999998643 3567777765   456677 7766554321  1   11111 11


Q ss_pred             CCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                      ..+..+ .....        ..+.. ...++|..|++.|.+++.+.|+                   +++.++ +++++.
T Consensus        70 p~~~~~-~~~~~--------~~~~~~~~~v~R~~~d~~L~~~a~~~G~-------------------~v~~~~-~~~i~~  120 (398)
T TIGR02028        70 PSNIAV-DIGRT--------LKEHEYIGMLRREVLDSFLRRRAADAGA-------------------TLINGL-VTKLSL  120 (398)
T ss_pred             CCceEE-EeccC--------CCCCCceeeeeHHHHHHHHHHHHHHCCc-------------------EEEcce-EEEEEe
Confidence            122111 11000        00111 2358999999999999999887                   676664 666642


Q ss_pred             ---eCCeEEEEEEeccCC--ceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCce
Q 008258          203 ---TDQCINVIASFLKEG--KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (572)
Q Consensus       203 ---~~~~v~v~~~~~~~g--~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~  277 (572)
                         .++.+.+++...+.+  ++++.+++||+||+|||++|.||+.+|....   .....+...+..+.. .  ....+..
T Consensus       121 ~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~---~~~~~~~~~~~~~~~-~--~~~~~~~  194 (398)
T TIGR02028       121 PADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDY---SYAIAFQERIRLPDE-K--MAYYDDL  194 (398)
T ss_pred             ccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCc---ceEEEEEEEeeCChh-h--cccCCCe
Confidence               234555665422110  1133479999999999999999999986421   111111111111100 0  0011122


Q ss_pred             EEEEE----ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE--ecCccccceec
Q 008258          278 LFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID--IKPWVMHAEVA  351 (572)
Q Consensus       278 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~--~~~w~~~~~~a  351 (572)
                      ..+++    .|+.++++++..   +...+.+....     .....+.+.+.++..........++..  ..++++.  ..
T Consensus       195 ~~~~~g~~~~p~gY~WifP~~---~~~~VG~g~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ip~~--~~  264 (398)
T TIGR02028       195 AEMYVGDDVSPDFYGWVFPKC---DHVAVGTGTVA-----AKPEIKRLQSGIRARAAGKVAGGRIIRVEAHPIPEH--PR  264 (398)
T ss_pred             EEEEeCCCCCCCceEEEEECC---CeEEEEEEeCC-----CCccHHHHHHhhhhhhhhccCCCcEEEEEEEecccc--cc
Confidence            22222    244445555443   22223332111     111222333333332111111112222  2233332  23


Q ss_pred             ccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC---CchhhHhhHHHhhhH
Q 008258          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKP  415 (572)
Q Consensus       352 ~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~---~~~~~L~~Y~~eR~~  415 (572)
                      +++.  .+|++|+|||||.++|.+|+|++.||+++..+|+.++..++..   .....|..|++..+.
T Consensus       265 ~~~~--~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~  329 (398)
T TIGR02028       265 PRRV--VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDK  329 (398)
T ss_pred             ccEE--CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHH
Confidence            4444  5899999999999999999999999999999999999877533   246789999986654

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.94  E-value=2.4e-24  Score=227.42  Aligned_cols=317  Identities=20%  Similarity=0.210  Sum_probs=194.7

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCe-eeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA-HFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a-~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +++||+||||||||++||+.|++.|++|+|+||++.+...+++ ..+.++.++-+... ...+ +...   .  .....+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~-~~~~-i~~~---v--~~~~~~   74 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPD-FDEE-IERK---V--TGARIY   74 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCC-cchh-hhee---e--eeeEEE
Confidence            4589999999999999999999999999999999999777766 78888887766432 2111 1111   1  111111


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                      .  . +.....         .  ......+.+.|..+++.|.+++++.|+                   +++.++++..+
T Consensus        75 ~--~-~~~~~~---------~--~~~~~~y~v~R~~fd~~La~~A~~aGa-------------------e~~~~~~~~~~  121 (396)
T COG0644          75 F--P-GEKVAI---------E--VPVGEGYIVDRAKFDKWLAERAEEAGA-------------------ELYPGTRVTGV  121 (396)
T ss_pred             e--c-CCceEE---------e--cCCCceEEEEhHHhhHHHHHHHHHcCC-------------------EEEeceEEEEE
Confidence            1  1 211110         0  001224678999999999999999998                   99999999999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEE
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (572)
                      ..+++++.+.+.   .+.   .++++++||+|||++|.+++.++.......... .........+      .......++
T Consensus       122 ~~~~~~~~~~~~---~~~---~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~-~~~~e~~~~~------~~~~~~~~~  188 (396)
T COG0644         122 IREDDGVVVGVR---AGD---DEVRAKVVIDADGVNSALARKLGLKDRKPEDYA-IGVKEVIEVP------DDGDVEEFL  188 (396)
T ss_pred             EEeCCcEEEEEE---cCC---EEEEcCEEEECCCcchHHHHHhCCCCCChhhee-EEeEEEEecC------CCCceEEEE
Confidence            999988877776   332   479999999999999999999998721111111 1111111110      001111111


Q ss_pred             EE----ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCc-----eeEEEec--Cccccce
Q 008258          281 IF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-----IDVIDIK--PWVMHAE  349 (572)
Q Consensus       281 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~i~~~~--~w~~~~~  349 (572)
                      +.    .|.+.+++++.  ..+...+.+......   ....+. . +.++++...+...     .++....  ..+....
T Consensus       189 ~~~~~~~~~Gy~wifP~--~~~~~~VG~g~~~~~---~~~~~~-~-~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~  261 (396)
T COG0644         189 YGPLDVGPGGYGWIFPL--GDGHANVGIGVLLDD---PSLSPF-L-ELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGP  261 (396)
T ss_pred             ecCCccCCCceEEEEEC--CCceEEEEEEEecCC---cCCCch-H-HHHHHHHhCcccchhccCCceEEEeeeecccCCc
Confidence            11    22233344333  234444444322111   111111 1 3344433222111     1222211  1222221


Q ss_pred             ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHH
Q 008258          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTA  422 (572)
Q Consensus       350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~  422 (572)
                      ....+.  .++++|+||||..++|.+|.|+..||..|..+|+.|.....+.  ...|..|+...+........
T Consensus       262 ~~~~~~--~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~--~~~l~~Y~~~~~~~~~~~~~  330 (396)
T COG0644         262 ASRPLV--GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG--EEALAEYERLLRKSLAREDL  330 (396)
T ss_pred             CCCccc--cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHH
Confidence            212133  5899999999999999999999999999999999999887554  66788898888766544333

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.94  E-value=2.7e-23  Score=219.37  Aligned_cols=354  Identities=16%  Similarity=0.209  Sum_probs=193.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccc-eeeeeC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK-FIYCTS  123 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~-~~~~~~  123 (572)
                      ||+||||||+|+++|+.|++.|++|+|||+.+... .+....++...   ++.+ ++.+.+..      .|.. ..+. .
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~-~~~~~~~~~~~---~~~~-~~~~~~~~------~~~~~~~~~-~   68 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP-GNHTYGVWDDD---LSDL-GLADCVEH------VWPDVYEYR-F   68 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-CCccccccHhh---hhhh-chhhHHhh------cCCCceEEe-c
Confidence            89999999999999999999999999999987542 23333444332   3444 54332221      1221 1111 0


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                      .....               ..+..+..+++..|.+.|.+.+.+.|+                   +++ ..++++++.+
T Consensus        69 ~~~~~---------------~~~~~~~~i~~~~l~~~l~~~~~~~gv-------------------~~~-~~~v~~i~~~  113 (388)
T TIGR01790        69 PKQPR---------------KLGTAYGSVDSTRLHEELLQKCPEGGV-------------------LWL-ERKAIHAEAD  113 (388)
T ss_pred             CCcch---------------hcCCceeEEcHHHHHHHHHHHHHhcCc-------------------EEE-ccEEEEEEec
Confidence            00000               012334568899999999999988776                   554 4577888776


Q ss_pred             -CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEE
Q 008258          204 -DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (572)
Q Consensus       204 -~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (572)
                       ++.+.+++.   +|.    +++|++||+|||.+|.+++.....   ...++......+...... .  . .....++-+
T Consensus       114 ~~~~~~v~~~---~g~----~~~a~~VI~A~G~~s~~~~~~~~~---~~~~q~~~G~~~~~~~~~-~--~-~~~~~~~d~  179 (388)
T TIGR01790       114 GVALSTVYCA---GGQ----RIQARLVIDARGFGPLVQYVRFPL---NVGFQVAYGVEARLSRPP-H--G-PSSMVIMDA  179 (388)
T ss_pred             CCceeEEEeC---CCC----EEEeCEEEECCCCchhcccccCCC---CceEEEEEEEEEEEcCCC-C--C-CCceEEEec
Confidence             556666554   443    689999999999999776432111   112233333333221100 0  0 011111111


Q ss_pred             ecC--------ceE--EEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHh---CCCCCceeEEEecCccccce
Q 008258          283 NTE--------AIG--VLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHAE  349 (572)
Q Consensus       283 ~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~i~~~~~w~~~~~  349 (572)
                      ...        ...  +++..+...+...+.....   ......+.+.+.+.+.+.+   ++....+.......+++...
T Consensus       180 ~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~~~~~iP~~~~  256 (388)
T TIGR01790       180 RVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSL---ADRPALPRDRLRQRILARLNAQGWQIKTIEEEEWGALPVGLP  256 (388)
T ss_pred             cccccccccccCCCCceEEEeecCCCeEEEEeccc---cCCCCCCHHHHHHHHHHHHHHcCCeeeEEEeeeeEEEecccC
Confidence            000        000  1111221222221111100   0112345556666666544   44322222222222233322


Q ss_pred             ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      ..  +.  .+||+++|||||.++|.+|+|++.++++|..||+.|++.++.. ...+++.|+...+++-.+..........
T Consensus       257 ~~--~~--~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (388)
T TIGR01790       257 GP--FL--PQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS-SELATAAWDGLWPTERRRQRYFRLLGRM  331 (388)
T ss_pred             CC--cc--CCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            21  22  5899999999999999999999999999999999999887543 4678899976655544331111110000


Q ss_pred             HhcccccccCCCccchhhhHHHhhcccCCCCcHHHHHHHHhhhhhhhhhHhhhhhccCCCcchH
Q 008258          430 AAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGS  493 (572)
Q Consensus       430 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~  493 (572)
                      ..      +.                    +.......+++.++.+....+.+|+-++.++...
T Consensus       332 ~l------~~--------------------~~~~~~~~~f~~~~~~~~~~~~~fl~~~~~~~~~  369 (388)
T TIGR01790       332 LF------LA--------------------LEPEERRRFFQRFFGLPEELWERFLAARLSLPDL  369 (388)
T ss_pred             HH------Hc--------------------CCHHHHHHHHHHHHCCCHHHHhhhhcCCCCHHHH
Confidence            00      11                    1233355666777766666777777666655443

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK10015 oxidoreductase; Provisional

Probab=99.92  E-value=6.2e-23  Score=218.37  Aligned_cols=332  Identities=15%  Similarity=0.183  Sum_probs=178.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-CCeeeeChhHHHHHHhhcchHHHHHhcCCCccc--ccc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-PQAHFINNRYALVFRKLDGLAEEIERSQPPVDL--WRK  117 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~-~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~--~~~  117 (572)
                      +.++||+||||||||+++|+.|++.|++|+||||.+.+... .++..+...+++.+  ++++..+     .+.+.  ...
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l--~~~~~~~-----~~i~~~~~~~   75 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAI--IPGFAAS-----APVERKVTRE   75 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHH--ccccccc-----CCccccccce
Confidence            45699999999999999999999999999999998876443 23444555444433  1233211     11110  011


Q ss_pred             eeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258          118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (572)
Q Consensus       118 ~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v  197 (572)
                      ..+..+..+...  ++.... ...  ..+...+.+.|..|++.|.+.+.+.|+                   +++.+++|
T Consensus        76 ~~~~~~~~~~~~--~~~~~~-~~~--~~~~~~~~v~R~~fd~~L~~~a~~~Gv-------------------~i~~~~~V  131 (429)
T PRK10015         76 KISFLTEESAVT--LDFHRE-QPD--VPQHASYTVLRNRLDPWLMEQAEQAGA-------------------QFIPGVRV  131 (429)
T ss_pred             eEEEEeCCCceE--eecccC-CCC--CCCcCceEeehhHHHHHHHHHHHHcCC-------------------EEECCcEE
Confidence            111111111111  111000 000  112234678899999999999999887                   88899999


Q ss_pred             EEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEec---Cc-ccccc-cc
Q 008258          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS---KD-LGDYL-LN  272 (572)
Q Consensus       198 ~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~---~~-l~~~~-~~  272 (572)
                      +++..+++.++....   ++    .+++||+||+|||.+|.+++.+++...... ....+.+....   .+ ..... ..
T Consensus       132 ~~i~~~~~~v~~v~~---~~----~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~-~~~~~gvk~~~~~~~~~i~~~~~~~  203 (429)
T PRK10015        132 DALVREGNKVTGVQA---GD----DILEANVVILADGVNSMLGRSLGMVPASDP-HHYAVGVKEVIGLTPEQINDRFNIT  203 (429)
T ss_pred             EEEEEeCCEEEEEEe---CC----eEEECCEEEEccCcchhhhcccCCCcCCCc-CeEEEEEEEEEeCCHHHhhHhhcCC
Confidence            998877666543322   22    268999999999999999999886432211 11122222111   01 00000 01


Q ss_pred             CCCceEEEEE-ecCc----eEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHh--CCCCCceeEEEecCc-
Q 008258          273 ERPGMLFFIF-NTEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV--GWELSDIDVIDIKPW-  344 (572)
Q Consensus       273 ~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~i~~~~~w-  344 (572)
                      ..++..+.++ .|..    .+++....   +...+.+...-........+.....+.+.+..  ......-+....... 
T Consensus       204 ~~~g~~w~~~g~~~~g~~g~G~~~~~~---d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~  280 (429)
T PRK10015        204 GEEGAAWLFAGSPSDGLMGGGFLYTNK---DSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHM  280 (429)
T ss_pred             CCCCeEEEecCccCCCCCCceEEEEcC---CcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEE
Confidence            1122222222 1111    22332221   22332221100000001122222222222110  000001122221111 


Q ss_pred             -cccc-eecccccccCCcEEEEecccccCCC--CCCCCchhHHHHHHHHHHHHHHHhc-CCCchhhHhhHHHhhhHH
Q 008258          345 -VMHA-EVAEKFLCCYNQIILAGDACHRFPP--AGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPI  416 (572)
Q Consensus       345 -~~~~-~~a~~~~~~~grV~LiGDAAH~~~P--~~G~G~n~ai~DA~~La~~La~~~~-g~~~~~~L~~Y~~eR~~~  416 (572)
                       +... ...++..  .++++++||||..++|  ..|.||+.||..+...|+.+...++ ++-+...|..|++.-+..
T Consensus       281 ip~gg~~~~~~~~--~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~  355 (429)
T PRK10015        281 VPEGGLAMVPQLV--NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQS  355 (429)
T ss_pred             cccCCcccCCccc--cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHC
Confidence             1111 1122332  5899999999999985  6999999999999999999988875 444567789999876643

>PLN02697 lycopene epsilon cyclase

Probab=99.92  E-value=8.5e-22  Score=212.09  Aligned_cols=311  Identities=17%  Similarity=0.271  Sum_probs=184.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ...+||+||||||+||++|+.|++.|++|+|||+....   +..++++.   +.++++ |+.+.+...      |.....
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~---~~n~GvW~---~~l~~l-gl~~~i~~~------w~~~~v  172 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF---TNNYGVWE---DEFKDL-GLEDCIEHV------WRDTIV  172 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC---CCccccch---hHHHhc-CcHHHHHhh------cCCcEE
Confidence            45689999999999999999999999999999986332   23344543   356777 787655432      221111


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                      .. ..++.+.              ....+..++|..|.+.|++++.+.|+                   ++ ++++|+++
T Consensus       173 ~~-~~~~~~~--------------~~~~Yg~V~R~~L~~~Ll~~a~~~GV-------------------~~-~~~~V~~I  217 (529)
T PLN02697        173 YL-DDDKPIM--------------IGRAYGRVSRTLLHEELLRRCVESGV-------------------SY-LSSKVDRI  217 (529)
T ss_pred             Ee-cCCceee--------------ccCcccEEcHHHHHHHHHHHHHhcCC-------------------EE-EeeEEEEE
Confidence            11 1122110              01223468899999999999988776                   55 67789999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccc-cCcceEEEEEEecCccccccccCCCceEE
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE-KDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (572)
                      +++++++.+...  .+|.    +++|++||+|||++|.  +.++....+. ..++....+.......     ...+... 
T Consensus       218 ~~~~~~~~vv~~--~dG~----~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~-----~~d~~~~-  283 (529)
T PLN02697        218 TEASDGLRLVAC--EDGR----VIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENN-----PYDPSLM-  283 (529)
T ss_pred             EEcCCcEEEEEE--cCCc----EEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCC-----CCCcchh-
Confidence            887777654332  1442    6899999999999993  2333221111 2344444444432210     0111111 


Q ss_pred             EEEecCceEEE-E-EecCCCCeEEEEeecCCCCCCC--------CCCCHHHHHHHHHHHh---CCCCCceeEEEecCccc
Q 008258          280 FIFNTEAIGVL-V-AHDLKEGEFILQVPFYPPQQNL--------EDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVM  346 (572)
Q Consensus       280 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~---~~~~~~~~i~~~~~w~~  346 (572)
                      .+++-.....- . ..+.....|.|.+|+.+..-..        ...+.+.+++.+.+.+   |+....+........++
T Consensus       284 vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~iPm  363 (529)
T PLN02697        284 VFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPV  363 (529)
T ss_pred             eeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeeecC
Confidence            11110000000 0 0011123466667765442211        2234555555555544   43322332222233455


Q ss_pred             cceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC----------CchhhHhhHHHhhhHH
Q 008258          347 HAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI----------APASILNTYETERKPI  416 (572)
Q Consensus       347 ~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~----------~~~~~L~~Y~~eR~~~  416 (572)
                      ...... .   .++++++||||+.++|.+|.|+..++.+|..+|..++..++..          .....++.|+......
T Consensus       364 ~g~~~~-~---~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e  439 (529)
T PLN02697        364 GGSLPN-T---EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQE  439 (529)
T ss_pred             CCCCcc-c---CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHH
Confidence            432222 2   3799999999999999999999999999999999999988533          2356788887766554


Q ss_pred             H
Q 008258          417 A  417 (572)
Q Consensus       417 a  417 (572)
                      .
T Consensus       440 ~  440 (529)
T PLN02697        440 R  440 (529)
T ss_pred             H
Confidence            4

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.91  E-value=7.2e-23  Score=213.54  Aligned_cols=339  Identities=13%  Similarity=0.171  Sum_probs=190.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCC--cccccceee
Q 008258           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP--VDLWRKFIY  120 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~--~~~~~~~~~  120 (572)
                      ||+|||||||||++|+.|++.  |++|+|+|+.+..... +...        +-.. ++.+.+...-.+  ...|.....
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~tw~--------~~~~-~~~~~~~~~~~~~v~~~W~~~~v   70 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-HTWS--------FFDS-DLSDAQHAWLADLVQTDWPGYEV   70 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-ccce--------eccc-ccchhhhhhhhhhheEeCCCCEE
Confidence            899999999999999999987  9999999997643210 1111        1111 222211110000  012222211


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                      .......                .-+..+..+.+.+|.+.|++.+..                      .++++.+|+++
T Consensus        71 ~~~~~~~----------------~l~~~Y~~I~r~~f~~~l~~~l~~----------------------~i~~~~~V~~v  112 (370)
T TIGR01789        71 RFPKYRR----------------KLKTAYRSMTSTRFHEGLLQAFPE----------------------GVILGRKAVGL  112 (370)
T ss_pred             ECcchhh----------------hcCCCceEEEHHHHHHHHHHhhcc----------------------cEEecCEEEEE
Confidence            1100000                012334678888998888765522                      36778889888


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEE
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (572)
                      +  +++|+  +.   +|.    +++|++||+|||.+|.....        ..+|.+..+...... . + ....+..+-+
T Consensus       113 ~--~~~v~--l~---dg~----~~~A~~VI~A~G~~s~~~~~--------~~~Q~f~G~~~r~~~-p-~-~~~~~~lMD~  170 (370)
T TIGR01789       113 D--ADGVD--LA---PGT----RINARSVIDCRGFKPSAHLK--------GGFQVFLGREMRLQE-P-H-GLENPIIMDA  170 (370)
T ss_pred             e--CCEEE--EC---CCC----EEEeeEEEECCCCCCCcccc--------ceeeEEEEEEEEEcC-C-C-CCCccEEEee
Confidence            3  45544  33   454    68999999999999752211        245666655544321 0 1 1111111111


Q ss_pred             EEecCceEEEEEecCCCCeEEEEeecCCCCC--------CCCCCCHHHHHHHHHHHh---CCCCCceeEEEecCccccc-
Q 008258          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQ--------NLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHA-  348 (572)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~---~~~~~~~~i~~~~~w~~~~-  348 (572)
                      ...          .....+|.+.+|+.+...        .....+.+.+.+.+.+.+   ++....+...+....++.. 
T Consensus       171 ~~~----------q~~g~~F~Y~lP~~~~~~lvE~T~~s~~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~~  240 (370)
T TIGR01789       171 TVD----------QLAGYRFVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLG  240 (370)
T ss_pred             ecc----------CCCCceEEEECcCCCCeEEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeecC
Confidence            110          011234555555443321        113345666665565543   4443333222322233322 


Q ss_pred             -eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHH
Q 008258          349 -EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN  427 (572)
Q Consensus       349 -~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~  427 (572)
                       .....|.. +++|+++|||||.++|.+|||++.+++||..|+..+.  +++.....++..|..+|+++..+..-.    
T Consensus       241 ~~~~~~~~~-~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----  313 (370)
T TIGR01789       241 GDFSAYQDE-VRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD--LSSEQLAAFIDSRARRHWSKTGYYRLL----  313 (370)
T ss_pred             CCccccccc-CCceeeeecccccccccccccHHHHHHHHHHHHhccC--cCccchhhhhhHHHHHHHHHhHHHHHH----
Confidence             12222332 4679999999999999999999999999999998774  123233456789999888777532111    


Q ss_pred             HHHhcccccccCCCccchhhhHHHhhcccCCCCcHHHHHHHHhhhhhhhhhHhhhhhccCCCcchHHH
Q 008258          428 FRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSR  495 (572)
Q Consensus       428 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~r  495 (572)
                                               ++.+...-++.....+++++|.+....+.+|+-++.+.....|
T Consensus       314 -------------------------~~~ll~~~~~~~~~~~f~~~f~l~~~~~~rFl~~~~~~~~~~~  356 (370)
T TIGR01789       314 -------------------------NRMLFFAAKPEKRVRVFQRFYGLREGLIERFYAARSNTFDKLR  356 (370)
T ss_pred             -------------------------HHHHhccCCchhHHHHHHHHhCCCHHHHHHHHhcCCCHHHHHH
Confidence                                     1111111234456788899998888888888888777655444

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.91  E-value=3.2e-23  Score=205.88  Aligned_cols=354  Identities=19%  Similarity=0.272  Sum_probs=197.6

Q ss_pred             cCCCCCCCCCCcccccCCC-CccCCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC--CC-------CCCeeee
Q 008258           22 PYGYTQCRALSDSKTIVSN-EAVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF--ST-------HPQAHFI   87 (572)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~-~~~~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~--~~-------~~~a~~l   87 (572)
                      ++.+++....+......+. ...+||+||||||+|+++|..|...    ..+|.|+|-...+  ..       .-+-..+
T Consensus        14 ~v~~t~~~~~~~~~s~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~   93 (481)
T KOG3855|consen   14 AVRYTQRLDTRRTASAKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSI   93 (481)
T ss_pred             ccccccccccccccccccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecC
Confidence            4556665555444333333 3479999999999999999999864    5789999987332  11       1244668


Q ss_pred             ChhHHHHHHhhcchHHHHHhc-CCCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHH-HH
Q 008258           88 NNRYALVFRKLDGLAEEIERS-QPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK-QL  165 (572)
Q Consensus        88 ~~rt~e~l~~l~Gl~~~l~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~-~~  165 (572)
                      ++++...|+.+ |.||.+... ..+...+  ++| .+.....+   . +.....   ..+.. +.+.-..+...|+. .+
T Consensus        94 s~~s~~~fk~~-~awd~i~~~R~~~~~~~--~v~-Ds~s~a~I---~-~~~d~~---~~d~a-~iien~nIq~sL~~s~~  161 (481)
T KOG3855|consen   94 SPASISLFKSI-GAWDHIFHDRYQKFSRM--LVW-DSCSAALI---L-FDHDNV---GIDMA-FIIENDNIQCSLYNSQL  161 (481)
T ss_pred             CcchHHHHHhc-CHHHHhhhhccccccce--eee-cccchhhh---h-hccccc---cccce-eeeehhHHHHHHHHHHH
Confidence            89999999999 999987653 2222111  111 11111111   0 000000   01111 22222233444443 22


Q ss_pred             HhcCceeeccCCcccccccccccceEEeccEEEEEee------eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA------TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       166 ~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~------~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      .+.                 .++++|....++..+..      ++.+-...+.- .+|.    .+.+|+||||||.+|.|
T Consensus       162 ~s~-----------------~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l-~dg~----~~~~~LLigAdg~Ns~v  219 (481)
T KOG3855|consen  162 DSE-----------------SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITL-TDGI----NFATDLLIGADGFNSVV  219 (481)
T ss_pred             hhh-----------------cCceeeecccceeeeccccccCCCCCcceEEEEe-ccCc----eeeeceeeccccccchh
Confidence            111                 13456777776665543      23333333321 1453    68999999999999999


Q ss_pred             hhhcCCccccccCcceEEEEEE-ecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEeec--------CCCC
Q 008258          240 RKLVGIDLVGEKDLQKLVSVHF-LSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPF--------YPPQ  310 (572)
Q Consensus       240 R~~lg~~~~g~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~  310 (572)
                      |+..++.+.+..+.+..+.... ...+      ...++..+.-|-|.+...+.+.......++|...-        .|++
T Consensus       220 R~~snid~~~~ny~~havVAtl~l~~~------~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e  293 (481)
T KOG3855|consen  220 RKASNIDVASWNYDQHAVVATLKLEEE------AILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSPENASILKSLPEE  293 (481)
T ss_pred             hhhcCCCcccccccceeeeEEEEeccc------ccccchhHHhcCCCCceeecccccccccceeecCHHHHHHHhcCCch
Confidence            9999999888776554433222 1111      11222333334444322222222222344443210        0110


Q ss_pred             C-------------CCCCC--CHHHHH-------HHHHHHhC------CCCCceeEEE--ecCccccceecccccccCCc
Q 008258          311 Q-------------NLEDF--SPEICE-------KLIFKLVG------WELSDIDVID--IKPWVMHAEVAEKFLCCYNQ  360 (572)
Q Consensus       311 ~-------------~~~~~--~~~~~~-------~~l~~~~~------~~~~~~~i~~--~~~w~~~~~~a~~~~~~~gr  360 (572)
                      +             ....+  +.....       +.+....+      .++.-+++.+  ...+++.-..++.|.  ..|
T Consensus       294 ~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV--~~~  371 (481)
T KOG3855|consen  294 RFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYV--TDR  371 (481)
T ss_pred             hHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhc--CCc
Confidence            0             00000  000000       01111111      1111123332  224677778888897  699


Q ss_pred             EEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-CC--CchhhHhhHHHhhhHHH
Q 008258          361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIA  417 (572)
Q Consensus       361 V~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g~--~~~~~L~~Y~~eR~~~a  417 (572)
                      +.|+|||||+++|..|||.|++..|+..|...|..++. |.  .+..-|+.|+.+|.+.-
T Consensus       372 ~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N  431 (481)
T KOG3855|consen  372 VALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHN  431 (481)
T ss_pred             hhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhhc
Confidence            99999999999999999999999999999999998763 33  34567999999997654

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.91  E-value=3.7e-22  Score=212.58  Aligned_cols=331  Identities=17%  Similarity=0.207  Sum_probs=178.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-CeeeeChhHHHHHHhhcchHHHHHhcCCCccc---cc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVDL---WR  116 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~-~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~---~~  116 (572)
                      +.++||+||||||||+++|+.|+++|++|+||||.+.+.... .+..+...+++.+  ++.+.    .. .+.+.   ..
T Consensus         3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l--~~~~~----~~-~~~~~~~~~~   75 (428)
T PRK10157          3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHI--IPGFA----DS-APVERLITHE   75 (428)
T ss_pred             cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHH--hhhhh----hc-Ccccceeeee
Confidence            456999999999999999999999999999999998765432 3334555444432  11121    11 11110   01


Q ss_pred             ceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccE
Q 008258          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE  196 (572)
Q Consensus       117 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~  196 (572)
                      ...+ .+..+...  .+.......   ..+...+.+.|..|++.|.+.+.+.|+                   +++.+++
T Consensus        76 ~~~~-~~~~~~~~--~~~~~~~~~---~~~~~~~~v~R~~fD~~L~~~a~~~Gv-------------------~i~~~~~  130 (428)
T PRK10157         76 KLAF-MTEKSAMT--MDYCNGDET---SPSQRSYSVLRSKFDAWLMEQAEEAGA-------------------QLITGIR  130 (428)
T ss_pred             eEEE-EcCCCcee--ecccccccc---CCCCCceeeEHHHHHHHHHHHHHHCCC-------------------EEECCCE
Confidence            1111 11122211  111100000   112224567899999999999999887                   8899999


Q ss_pred             EEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEec--C-c-c-ccccc
Q 008258          197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS--K-D-L-GDYLL  271 (572)
Q Consensus       197 v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~--~-~-l-~~~~~  271 (572)
                      |++++.+++.+.+...   ++.    +++|++||+|||++|.+++.+|+...-. ..+..+.+....  + + . ..+..
T Consensus       131 V~~i~~~~g~v~~v~~---~g~----~i~A~~VI~A~G~~s~l~~~lgl~~~~~-~~~~av~~~~~~~~~~~~~~~~~~~  202 (428)
T PRK10157        131 VDNLVQRDGKVVGVEA---DGD----VIEAKTVILADGVNSILAEKLGMAKRVK-PTDVAVGVKELIELPKSVIEDRFQL  202 (428)
T ss_pred             EEEEEEeCCEEEEEEc---CCc----EEECCEEEEEeCCCHHHHHHcCCCCCCC-CcEEEEEEEEEEEcCHHHHHHhhcc
Confidence            9999877766543322   332    6899999999999999999988653211 112222222111  0 0 0 00111


Q ss_pred             cCCCceEE-EEEecCc----eEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCC--CCceeEEEecCc
Q 008258          272 NERPGMLF-FIFNTEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVIDIKPW  344 (572)
Q Consensus       272 ~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~~~~~w  344 (572)
                      ...++..+ +...|..    .+++.. +  .....+.+............+...+.+.+.+.....  ...-+......+
T Consensus       203 ~~~~g~~~~~~g~~~~g~~ggG~~~~-~--~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~  279 (428)
T PRK10157        203 QGNQGAACLFAGSPTDGLMGGGFLYT-N--ENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAH  279 (428)
T ss_pred             CCCCCeEEEEEECCCCCCcCceeEEE-c--CCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhh
Confidence            11222222 2222221    122222 1  122222221110000011123333333332211100  000111111111


Q ss_pred             ccc--c-eecccccccCCcEEEEecccccCCC--CCCCCchhHHHHHHHHHHHHHHHhc-CCCchhhHhhHHHhhhHH
Q 008258          345 VMH--A-EVAEKFLCCYNQIILAGDACHRFPP--AGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPI  416 (572)
Q Consensus       345 ~~~--~-~~a~~~~~~~grV~LiGDAAH~~~P--~~G~G~n~ai~DA~~La~~La~~~~-g~~~~~~L~~Y~~eR~~~  416 (572)
                      .+.  . ...++..  .++++++||||..++|  +.|.|++.||..+..+|+.+.+.++ ++.....|..|++.-+..
T Consensus       280 ~ip~~g~~~~~~~~--~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~  355 (428)
T PRK10157        280 VVPEAGINMLPELV--GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG  355 (428)
T ss_pred             HhhcCCcccCCcee--cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh
Confidence            111  0 1112222  5899999999999998  5899999999999999999988775 344556899999866544

>PLN02463 lycopene beta cyclase

Probab=99.89  E-value=1.7e-20  Score=199.24  Aligned_cols=311  Identities=16%  Similarity=0.188  Sum_probs=181.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ...+||+|||||||||++|+.|++.|++|+|||+.+... .++...++   .+.++++ |+.+.+.... +.    ..++
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~-~p~~~g~w---~~~l~~l-gl~~~l~~~w-~~----~~v~   95 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI-WPNNYGVW---VDEFEAL-GLLDCLDTTW-PG----AVVY   95 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch-hccccchH---HHHHHHC-CcHHHHHhhC-CC----cEEE
Confidence            456899999999999999999999999999999976432 23333222   3567777 8887765422 11    0111


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                      ..+....                .....+..++|..|.+.|++++.+.|+                   +++ ..+|+++
T Consensus        96 ~~~~~~~----------------~~~~~y~~V~R~~L~~~Ll~~~~~~GV-------------------~~~-~~~V~~I  139 (447)
T PLN02463         96 IDDGKKK----------------DLDRPYGRVNRKKLKSKMLERCIANGV-------------------QFH-QAKVKKV  139 (447)
T ss_pred             EeCCCCc----------------cccCcceeEEHHHHHHHHHHHHhhcCC-------------------EEE-eeEEEEE
Confidence            1111100                011224567899999999999988776                   554 4688999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCc-eEE
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG-MLF  279 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~  279 (572)
                      +++++++.|++.   +|.    +++||+||+|||.+|.+++.-.   .....++....+.......     ...+. +.+
T Consensus       140 ~~~~~~~~V~~~---dG~----~i~A~lVI~AdG~~s~l~~~~~---~~~~g~Q~a~Gi~~ev~~~-----p~d~~~~vl  204 (447)
T PLN02463        140 VHEESKSLVVCD---DGV----KIQASLVLDATGFSRCLVQYDK---PFNPGYQVAYGILAEVDSH-----PFDLDKMLF  204 (447)
T ss_pred             EEcCCeEEEEEC---CCC----EEEcCEEEECcCCCcCccCCCC---CCCccceeeeeEEeecCCC-----Ccccccchh
Confidence            988888877775   553    6999999999999998765311   1223344444333221110     00011 100


Q ss_pred             EEEecCceEE---EEEecCCCCeEEEEeecCCCCC--------CCCCCCHHHHHHHHHHHh---CCCCCceeEEEecCcc
Q 008258          280 FIFNTEAIGV---LVAHDLKEGEFILQVPFYPPQQ--------NLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWV  345 (572)
Q Consensus       280 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~---~~~~~~~~i~~~~~w~  345 (572)
                      +-+.....+.   +...+.....|.+.+|+.+..-        .....+.+.+++.+.+.+   |.....+........+
T Consensus       205 MD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~IP  284 (447)
T PLN02463        205 MDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIP  284 (447)
T ss_pred             hhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeEee
Confidence            0000000000   0000000123555566544321        112334455555555543   3322222222222234


Q ss_pred             ccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCc---------h---hhHhhHHHhh
Q 008258          346 MHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP---------A---SILNTYETER  413 (572)
Q Consensus       346 ~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~---------~---~~L~~Y~~eR  413 (572)
                      +... .+.+   .+||+++||||..++|.+|.|+-.++..+..+|+.++..++....         .   ..|..|+..|
T Consensus       285 mg~~-~~~~---~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~  360 (447)
T PLN02463        285 MGGP-LPVI---PQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRR  360 (447)
T ss_pred             CCCC-CCCC---CCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhH
Confidence            4332 1222   479999999999999999999999999999999999998864322         1   3566666655


Q ss_pred             hHH
Q 008258          414 KPI  416 (572)
Q Consensus       414 ~~~  416 (572)
                      +..
T Consensus       361 ~~~  363 (447)
T PLN02463        361 QRE  363 (447)
T ss_pred             hHH
Confidence            543

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.87  E-value=3.2e-20  Score=182.59  Aligned_cols=353  Identities=18%  Similarity=0.177  Sum_probs=201.0

Q ss_pred             CCCcccccCCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcC
Q 008258           30 ALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQ  109 (572)
Q Consensus        30 ~~~~~~~~~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~  109 (572)
                      ...+-+...+.+..+||+|||||.+|.++|..|+|.|-+|.||||+-.-.++--+..++|.+...|.+| |+.|.++..-
T Consensus        32 ~~~~~~~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~L-Gl~Dcve~ID  110 (509)
T KOG1298|consen   32 NVAETSVEARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKL-GLEDCVEGID  110 (509)
T ss_pred             ccchhhhhhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHh-CHHHHhhccc
Confidence            334434445667789999999999999999999999999999999866555556788999999999999 9999987643


Q ss_pred             CCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccc
Q 008258          110 PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR  189 (572)
Q Consensus       110 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~  189 (572)
                      ... .....++   .+|+... ... ...++..   ......+.-.++.+-|++.+...                  |++
T Consensus       111 AQ~-v~Gy~if---k~gk~v~-~py-P~~~f~~---d~~GrsFhnGRFvq~lR~ka~sl------------------pNV  163 (509)
T KOG1298|consen  111 AQR-VTGYAIF---KDGKEVD-LPY-PLKNFPS---DPSGRSFHNGRFVQRLRKKAASL------------------PNV  163 (509)
T ss_pred             ceE-eeeeEEE---eCCceee-ccC-CCcCCCC---CcccceeeccHHHHHHHHHHhcC------------------CCe
Confidence            221 1111112   2454332 111 1112221   11234455667888888887554                  444


Q ss_pred             eEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCcccc
Q 008258          190 EILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD  268 (572)
Q Consensus       190 ~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~  268 (572)
                      ++..|+ |.++-++++.|+ |+..  +.+ +++.+..|.+-|.|||..|..|+.+--+...+ -...++..-....+   
T Consensus       164 ~~eeGt-V~sLlee~gvvkGV~yk--~k~-gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~-V~S~fVG~vl~N~~---  235 (509)
T KOG1298|consen  164 RLEEGT-VKSLLEEEGVVKGVTYK--NKE-GEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEE-VPSYFVGLVLKNCR---  235 (509)
T ss_pred             EEeeee-HHHHHhccCeEEeEEEe--cCC-CceEEEecceEEEecchhHHHHHHhcCCcccc-cchheeeeeecCCC---
Confidence            555443 333333333222 2333  222 24467889999999999999999984321110 11122222222222   


Q ss_pred             ccccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecC--CCCC-----------CCCCCCHHHHHHHHHHHhCCCCCc
Q 008258          269 YLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFY--PPQQ-----------NLEDFSPEICEKLIFKLVGWELSD  335 (572)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~  335 (572)
                         .+.|+..+.++..-...++........+..+.+|-.  |+..           -.+..++ .+.+.+.+.+..  ..
T Consensus       236 ---l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~-~lR~~F~~av~~--g~  309 (509)
T KOG1298|consen  236 ---LPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANGEMATYMKESVAPQIPE-KLRESFLEAVDE--GN  309 (509)
T ss_pred             ---CCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccchhHHHHHHHhhCcCCCH-HHHHHHHHHhhc--cc
Confidence               123444444444322233333332223333333210  0000           0011111 122222222211  11


Q ss_pred             eeEEEecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc---CCCchhhHhhHHHh
Q 008258          336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETE  412 (572)
Q Consensus       336 ~~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~---g~~~~~~L~~Y~~e  412 (572)
                      ++...     -....+...  ....++|+|||-..-+|.+|.||..++.|...|-+.|.-+.+   .....+.+.+|..+
T Consensus       310 irsmp-----n~~mpa~~~--~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~  382 (509)
T KOG1298|consen  310 IRSMP-----NSSMPATLN--DKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWI  382 (509)
T ss_pred             hhcCc-----cccCCCCcC--CCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHh
Confidence            11111     111112222  257899999999999999999999999999999888865321   11224678899999


Q ss_pred             hhHHHHHhHHHHHHHHHHh
Q 008258          413 RKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       413 R~~~a~~~~~~s~~~~~~~  431 (572)
                      |+|.+..+..++...++.+
T Consensus       383 RKp~s~tINtLa~Aly~vf  401 (509)
T KOG1298|consen  383 RKPYSATINTLANALYQVF  401 (509)
T ss_pred             hcchhHHHHHHHHHHHHHh
Confidence            9999877766666555444

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.85  E-value=8.8e-19  Score=183.52  Aligned_cols=275  Identities=16%  Similarity=0.263  Sum_probs=159.1

Q ss_pred             CEEEECCCHHHHHHHHHH--HhCCCCEEEEcCCCCCC-CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           45 PVLIVGAGPVGLVLSILL--TKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~L--a~~Gi~v~viEr~~~~~-~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      ||+|||||||||++|..|  ++.|.+|+|||+.+... ...+......      ..+ +..+.+...     .|......
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~------~~~-~~~~~~v~~-----~w~~~~v~   68 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWE------KDL-GPLDSLVSH-----RWSGWRVY   68 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccc------ccc-cchHHHHhe-----ecCceEEE
Confidence            899999999999999999  88899999999987651 1111211211      111 212233222     22221111


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                      . ..+...              .....+..+++.+|.+.|.+++.. +.                   .++++.+|++++
T Consensus        69 ~-~~~~~~--------------~~~~~Y~~i~~~~f~~~l~~~~~~-~~-------------------~~~~~~~V~~i~  113 (374)
T PF05834_consen   69 F-PDGSRI--------------LIDYPYCMIDRADFYEFLLERAAA-GG-------------------VIRLNARVTSIE  113 (374)
T ss_pred             e-CCCceE--------------EcccceEEEEHHHHHHHHHHHhhh-CC-------------------eEEEccEEEEEE
Confidence            1 111110              111345678999999999999883 32                   677889999999


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEE
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI  281 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  281 (572)
                      .+++++.+++.   +|.    +++|++||+|+|..|...+..        .+|.+..+...... ..+ ....+..+-|.
T Consensus       114 ~~~~~~~v~~~---~g~----~i~a~~VvDa~g~~~~~~~~~--------~~Q~f~G~~v~~~~-~~f-~~~~~~lMD~r  176 (374)
T PF05834_consen  114 ETGDGVLVVLA---DGR----TIRARVVVDARGPSSPKARPL--------GLQHFYGWEVETDE-PVF-DPDTATLMDFR  176 (374)
T ss_pred             ecCceEEEEEC---CCC----EEEeeEEEECCCccccccccc--------ccceeEEEEEeccC-CCC-CCCceEEEEec
Confidence            99887777765   664    799999999999777622222        24555555443321 000 01111111111


Q ss_pred             EecCceEEEEEecCCCCeEEEEeecCCCCC--------CCCCCCHHHHHHHHHHH---hCCCCCceeEEEecCccccc-e
Q 008258          282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQ--------NLEDFSPEICEKLIFKL---VGWELSDIDVIDIKPWVMHA-E  349 (572)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~---~~~~~~~~~i~~~~~w~~~~-~  349 (572)
                      ....         .....|.+.+|+.+..-        .....+.+.+.+.+.+.   .|.....+.-......++.. .
T Consensus       177 ~~~~---------~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IPm~~~~  247 (374)
T PF05834_consen  177 VPQS---------ADGPSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLRRYLERLGIDDYEILEEERGVIPMTTGG  247 (374)
T ss_pred             ccCC---------CCCceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCCceeEEEeecceeecccCC
Confidence            1100         01234555555543321        11224555555555544   35544333333333455521 2


Q ss_pred             ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 008258          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS  395 (572)
Q Consensus       350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~  395 (572)
                      .....   .++++.+|+||+.++|.+|.++-.++..|..+|..|..
T Consensus       248 ~~~~~---~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~  290 (374)
T PF05834_consen  248 FPPRF---GQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK  290 (374)
T ss_pred             Ccccc---CCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence            22222   47899999999999999999888888888877777764

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.83  E-value=1.3e-18  Score=185.93  Aligned_cols=333  Identities=17%  Similarity=0.227  Sum_probs=177.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHH--HHhcCCCcc------
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IERSQPPVD------  113 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G---i~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~--l~~~~~~~~------  113 (572)
                      ||+|||||+||.++|..|++.+   ++|+|||+...+.. +-+....|....+++.+ |+.+.  +.+.....+      
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~-~vGe~~~p~~~~~~~~l-gi~e~~~~~~~~~~~k~g~~f~   78 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRI-GVGESTLPSLRPFLRRL-GIDEADFMRACDATFKLGIRFV   78 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHH-T--HHHHCHHCT-EEESEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCC-CccccchHHHHHHHHHc-CCChHHHHHHhCCeEeccEEee
Confidence            6999999999999999999998   99999999876643 34556777788899999 99877  444433221      


Q ss_pred             cccc--eeeee--CCCCCeeeeecC---------C-Ccc---------------cccc----ccC-CccccccChhhHHH
Q 008258          114 LWRK--FIYCT--SVTGPILGSVDH---------M-QPQ---------------DFEK----VVS-PVSVAHFSQYKLNK  159 (572)
Q Consensus       114 ~~~~--~~~~~--~~~G~~~~~~~~---------~-~~~---------------~~~~----~~s-p~~~~~l~q~~L~~  159 (572)
                      .|..  ..+..  ...|..+...+.         . ...               .+..    ... ....+|++|..+++
T Consensus        79 ~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~  158 (454)
T PF04820_consen   79 NWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQ  158 (454)
T ss_dssp             SSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHH
T ss_pred             ecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHH
Confidence            1221  00110  011111111100         0 000               0000    011 11248899999999


Q ss_pred             HHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          160 LLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       160 ~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      .|++.+.+.|+                   +++.+ +|++++.++++....+... +|.    +++||++|+|+|.+|.+
T Consensus       159 ~L~~~A~~~Gv-------------------~~~~g-~V~~v~~~~~g~i~~v~~~-~g~----~i~ad~~IDASG~~s~L  213 (454)
T PF04820_consen  159 FLRRHAEERGV-------------------EVIEG-TVVDVELDEDGRITAVRLD-DGR----TIEADFFIDASGRRSLL  213 (454)
T ss_dssp             HHHHHHHHTT--------------------EEEET--EEEEEE-TTSEEEEEEET-TSE----EEEESEEEE-SGGG-CC
T ss_pred             HHHHHHhcCCC-------------------EEEeC-EEEEEEEcCCCCEEEEEEC-CCC----EEEEeEEEECCCccchh
Confidence            99999999998                   66666 4777777766654445422 442    79999999999999998


Q ss_pred             hhh-cCCccccccCcc---eEEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCC
Q 008258          240 RKL-VGIDLVGEKDLQ---KLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLED  315 (572)
Q Consensus       240 R~~-lg~~~~g~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (572)
                      .++ ++.++.....+.   ..+.++....+      ...+... ....+.++.+.++...+  ... .+-+..     ..
T Consensus       214 ~~~~L~~~~~~~~~~L~~d~av~~~~~~~~------~~~~~T~-~~a~~~GW~W~IPL~~~--~~~-G~V~s~-----~~  278 (454)
T PF04820_consen  214 ARKALKVGFRDWSDWLPNDRAVAVQVPNED------PPEPYTR-STAFEAGWIWYIPLQNR--RGS-GYVYSS-----DF  278 (454)
T ss_dssp             CCCCT-EEEEEETTTCEEEEEEEEEEE-SS------CTTSSEE-EEEESSEEEEEEEESSE--EEE-EEEEET-----TT
T ss_pred             hHhhhcCCCccccccccccEEEEEecCcCC------CCCCcee-EEecCCceEEEccCCCc--ceE-EEEecc-----cc
Confidence            776 444433322221   12222222111      1112211 11222322233333221  111 111111     12


Q ss_pred             CCHHHHHHHHHHHhCCCCCce-eEEEecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHH
Q 008258          316 FSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA  394 (572)
Q Consensus       316 ~~~~~~~~~l~~~~~~~~~~~-~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La  394 (572)
                      .+++...+.+.+.++...... ..+.....     ...++.  .+|+++|||||..++|..+.|+.+++..+..|+..|.
T Consensus       279 ~s~~~A~~~l~~~l~~~~~~~~~~i~~~~g-----~~~~~~--~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~  351 (454)
T PF04820_consen  279 ISDDEAEAELLAYLGGSPEAEPRHIRFRSG-----RRKQFW--GKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALP  351 (454)
T ss_dssp             SHHHHHHHHHHHHHTCHCTTSCEEEE-S-E-----EESSSE--ETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHH
T ss_pred             CCHHHHHHHHHHhcchhhhcchhhhccccc-----chhhcc--cCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcc
Confidence            244444444444444322111 22222111     123332  4899999999999999999999999997777777665


Q ss_pred             HHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          395 SVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       395 ~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      .   +...+.+++.|++..+...+.+.+.-...|.
T Consensus       352 ~---~~~~~~~~~~Yn~~~~~~~~~~~~fi~~hY~  383 (454)
T PF04820_consen  352 D---DDFSPAALDRYNRRMRREYERIRDFISLHYQ  383 (454)
T ss_dssp             C---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3   3444789999999998888777666555554

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.47  E-value=6.3e-13  Score=131.47  Aligned_cols=144  Identities=19%  Similarity=0.281  Sum_probs=95.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--CCe-----eeeChhHHHHHHhhcchHHHHHhcCCCcc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--PQA-----HFINNRYALVFRKLDGLAEEIERSQPPVD  113 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~--~~a-----~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~  113 (572)
                      ..++||+||||||+||++|+.|++.|++|+|+||.+.+...  +.+     ..+...+.++|+++ |+         +..
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~-gv---------~~~   92 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEF-GI---------RYK   92 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHC-CC---------Cce
Confidence            34689999999999999999999999999999998765321  111     12223333444443 32         110


Q ss_pred             cccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEe
Q 008258          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM  193 (572)
Q Consensus       114 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~  193 (572)
                         .     .                      ....+.+++..+...|.+.+.+.|+                   ++++
T Consensus        93 ---~-----~----------------------~~g~~~vd~~~l~~~L~~~A~~~Gv-------------------~I~~  123 (257)
T PRK04176         93 ---E-----V----------------------EDGLYVADSVEAAAKLAAAAIDAGA-------------------KIFN  123 (257)
T ss_pred             ---e-----e----------------------cCcceeccHHHHHHHHHHHHHHcCC-------------------EEEc
Confidence               0     0                      0001335677888899999998887                   8888


Q ss_pred             ccEEEEEeeeCC-eEE-EEEEec---cCC-ceeeEEEEecEEEeecCCChhhhhhc
Q 008258          194 GHECVSVSATDQ-CIN-VIASFL---KEG-KCTERNIQCNILIGTDGAGSTVRKLV  243 (572)
Q Consensus       194 g~~v~~v~~~~~-~v~-v~~~~~---~~g-~~~~~~i~ad~vVgADG~~S~VR~~l  243 (572)
                      +++++++..+++ .+. +.+...   ..+ .....+++|++||.|+|.+|.+.+.+
T Consensus       124 ~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l  179 (257)
T PRK04176        124 GVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL  179 (257)
T ss_pred             CceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence            888888876555 332 111100   011 11245799999999999999998877

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.42  E-value=2.2e-12  Score=127.19  Aligned_cols=143  Identities=18%  Similarity=0.260  Sum_probs=92.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--Ce-----eeeChhHHHHHHhhcchHHHHHhcCCCccc
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QA-----HFINNRYALVFRKLDGLAEEIERSQPPVDL  114 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~--~a-----~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~  114 (572)
                      .++||+||||||+||++|+.|+++|.+|+|+||...+....  .+     ..+...+.++++++ |+         +...
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~-gi---------~~~~   89 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEF-GI---------RYED   89 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHC-CC---------Ceee
Confidence            46899999999999999999999999999999998653111  11     11222233333333 22         1000


Q ss_pred             ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (572)
Q Consensus       115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g  194 (572)
                                .                    ....+..++..+...|.+++.+.|+                   +++++
T Consensus        90 ----------~--------------------~~g~~~~~~~el~~~L~~~a~e~GV-------------------~I~~~  120 (254)
T TIGR00292        90 ----------E--------------------GDGYVVADSAEFISTLASKALQAGA-------------------KIFNG  120 (254)
T ss_pred             ----------c--------------------cCceEEeeHHHHHHHHHHHHHHcCC-------------------EEECC
Confidence                      0                    0001223566888889999988887                   88899


Q ss_pred             cEEEEEeeeCCe--EEEEEEe-c---cCC-ceeeEEEEecEEEeecCCChhhhhhc
Q 008258          195 HECVSVSATDQC--INVIASF-L---KEG-KCTERNIQCNILIGTDGAGSTVRKLV  243 (572)
Q Consensus       195 ~~v~~v~~~~~~--v~v~~~~-~---~~g-~~~~~~i~ad~vVgADG~~S~VR~~l  243 (572)
                      ++++++..+++.  +.-.+.. .   ..| .....+++|++||.|+|..|.+.+.+
T Consensus       121 t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       121 TSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             cEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence            999998876662  3221110 0   011 11245899999999999999887765

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=99.41  E-value=5.9e-12  Score=122.52  Aligned_cols=189  Identities=20%  Similarity=0.175  Sum_probs=108.9

Q ss_pred             ecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEee
Q 008258          226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP  305 (572)
Q Consensus       226 ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (572)
                      |.+.|.|||..|.+|+++...  -......++.......+      -+.++..+.+..+....++........+..+.+|
T Consensus         2 A~LtivaDG~~S~fRk~l~~~--~~~v~S~fvGl~l~~~~------lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp   73 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELSDN--KPQVRSYFVGLILKDAP------LPKPNHGHVILGKPGPILLYQISSNETRVLVDVP   73 (276)
T ss_pred             CCEEEEecCCchHHHHhhcCC--CCceeeeEEEEEEcCCC------CCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeC
Confidence            679999999999999998721  12223345555443332      2234445555544443444444433344444444


Q ss_pred             cC-CCCCCCCCCC-----------HHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCCcEEEEecccccCCC
Q 008258          306 FY-PPQQNLEDFS-----------PEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPP  373 (572)
Q Consensus       306 ~~-~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P  373 (572)
                      -. .|...-.++.           ++.+++.+.+.+..  ..+.....+.+     .+....  ..+++++|||++..+|
T Consensus        74 ~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~--~rirsMPn~~l-----p~~~~~--~~G~vllGDA~nmrHP  144 (276)
T PF08491_consen   74 GPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALED--GRIRSMPNSFL-----PASPNW--KPGVVLLGDAANMRHP  144 (276)
T ss_pred             CCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhcc--CCcceeccccc-----CCCCCC--CCCEEEEehhhcCcCC
Confidence            22 1110000000           11122222222221  12222211111     122222  4789999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHH--hcC-CCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          374 AGGFGMNTGVQDAHNLAWKIASV--LKD-IAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       374 ~~G~G~n~ai~DA~~La~~La~~--~~g-~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                      .+|+||+.|+.|+..|++.|...  +.+ .+..+++++|+.+|++....+.-++...+..+
T Consensus       145 LTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF  205 (276)
T PF08491_consen  145 LTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLF  205 (276)
T ss_pred             ccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence            99999999999999999999876  211 12356899999999999987777777666554

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.30  E-value=9.4e-12  Score=125.51  Aligned_cols=157  Identities=23%  Similarity=0.308  Sum_probs=98.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCCeeeeChh-HHHHHHhhcchHHHHHh---cCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNR-YALVFRKLDGLAEEIER---SQPP  111 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~------~~~a~~l~~r-t~e~l~~l~Gl~~~l~~---~~~~  111 (572)
                      +.+||+|||||||||++|+.++++|.+|+|||+.+.+..      .++.-+.|.. .-+++...||=...+..   .-.|
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            458999999999999999999999999999999987632      2232233322 23444444322122211   1111


Q ss_pred             cccccceeeeeCCCCCeeeeecCCCccccccccCCccccc-cChhhHHHHHHHHHHhcCceeeccCCcccccccccccce
Q 008258          112 VDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH-FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE  190 (572)
Q Consensus       112 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~-l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (572)
                      .+...   |. ...|-.+..-+           +..-+.. -.-..+.+.|+.++++.|+                   +
T Consensus        82 ~d~i~---~~-e~~Gi~~~e~~-----------~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV-------------------~  127 (408)
T COG2081          82 EDFID---WV-EGLGIALKEED-----------LGRMFPDSDKASPIVDALLKELEALGV-------------------T  127 (408)
T ss_pred             HHHHH---HH-HhcCCeeEEcc-----------CceecCCccchHHHHHHHHHHHHHcCc-------------------E
Confidence            11100   00 01111111100           0000001 1234677889999999987                   9


Q ss_pred             EEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       191 i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      ++.+++|.+++.++++..++..   +|.    +++||-||-|-|..|.=
T Consensus       128 i~~~~~v~~v~~~~~~f~l~t~---~g~----~i~~d~lilAtGG~S~P  169 (408)
T COG2081         128 IRTRSRVSSVEKDDSGFRLDTS---SGE----TVKCDSLILATGGKSWP  169 (408)
T ss_pred             EEecceEEeEEecCceEEEEcC---CCC----EEEccEEEEecCCcCCC
Confidence            9999999999998877777664   553    79999999999999853

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.27  E-value=4.7e-10  Score=118.08  Aligned_cols=70  Identities=24%  Similarity=0.283  Sum_probs=51.8

Q ss_pred             cChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEe
Q 008258          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (572)
Q Consensus       152 l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVg  231 (572)
                      ++-..+.+.|.+.+.+.|+                   +++++++|++++.+++.+++++.   ++     +++||.||.
T Consensus       142 i~p~~~~~~l~~~~~~~g~-------------------~~~~~~~V~~i~~~~~~~~v~~~---~~-----~i~a~~vV~  194 (380)
T TIGR01377       142 LYAEKALRALQELAEAHGA-------------------TVRDGTKVVEIEPTELLVTVKTT---KG-----SYQANKLVV  194 (380)
T ss_pred             EcHHHHHHHHHHHHHHcCC-------------------EEECCCeEEEEEecCCeEEEEeC---CC-----EEEeCEEEE
Confidence            3445677778888877776                   88899999999988777766543   33     588998888


Q ss_pred             ecCCC-hhhhhhcCCccc
Q 008258          232 TDGAG-STVRKLVGIDLV  248 (572)
Q Consensus       232 ADG~~-S~VR~~lg~~~~  248 (572)
                      |.|.. |.+++.+++...
T Consensus       195 aaG~~~~~l~~~~g~~~~  212 (380)
T TIGR01377       195 TAGAWTSKLLSPLGIEIP  212 (380)
T ss_pred             ecCcchHHHhhhcccCCC
Confidence            88875 668887775543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.22  E-value=1.8e-10  Score=106.62  Aligned_cols=143  Identities=17%  Similarity=0.255  Sum_probs=92.7

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCC-----eeeeChhHHHHHHhhcchHHHHHhcCCCccc
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQ-----AHFINNRYALVFRKLDGLAEEIERSQPPVDL  114 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~--~~~-----a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~  114 (572)
                      .+.||+||||||+||++|+.|++.|++|+|+||+-.+.-  .+.     ...+...+-++|+++ |+.         .+.
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~-gI~---------ye~   98 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEF-GIR---------YEE   98 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHh-CCc---------cee
Confidence            357999999999999999999999999999999877632  111     245566777888877 542         100


Q ss_pred             ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (572)
Q Consensus       115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g  194 (572)
                      .        .+|                      ++..+-..+...|..++.+.|+                   +|.-+
T Consensus        99 ~--------e~g----------------------~~v~ds~e~~skl~~~a~~aGa-------------------ki~n~  129 (262)
T COG1635          99 E--------EDG----------------------YYVADSAEFASKLAARALDAGA-------------------KIFNG  129 (262)
T ss_pred             c--------CCc----------------------eEEecHHHHHHHHHHHHHhcCc-------------------eeeec
Confidence            0        011                      1223345666678888888887                   66666


Q ss_pred             cEEEEEeeeCC-eEEEEEEe-----ccCCceeeEEEEecEEEeecCCChhhhhhc
Q 008258          195 HECVSVSATDQ-CINVIASF-----LKEGKCTERNIQCNILIGTDGAGSTVRKLV  243 (572)
Q Consensus       195 ~~v~~v~~~~~-~v~v~~~~-----~~~g~~~~~~i~ad~vVgADG~~S~VR~~l  243 (572)
                      +.++++...++ +|.-.+..     ...-.-.+.++++++||.|.|--..|-+.+
T Consensus       130 ~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         130 VSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             ceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence            67776655544 33322110     000011234799999999999877765544

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.22  E-value=2e-10  Score=107.07  Aligned_cols=142  Identities=18%  Similarity=0.229  Sum_probs=85.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--C-----CeeeeChhHHHHHHhhcchHHHHHhcCCCcc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--P-----QAHFINNRYALVFRKLDGLAEEIERSQPPVD  113 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~--~-----~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~  113 (572)
                      ..++||+||||||+||++|+.|++.|++|+|+||+..+...  .     ....++..+.++|+++ |+.-         +
T Consensus        15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el-gi~y---------~   84 (230)
T PF01946_consen   15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL-GIPY---------E   84 (230)
T ss_dssp             HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH-T------------E
T ss_pred             hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC-Ccee---------E
Confidence            34689999999999999999999999999999998776321  1     1255677788888888 6521         0


Q ss_pred             cccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEe
Q 008258          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM  193 (572)
Q Consensus       114 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~  193 (572)
                      ..                              ...++..+-.++...|..++.+.|+                   ++.-
T Consensus        85 ~~------------------------------~~g~~v~d~~~~~s~L~s~a~~aGa-------------------kifn  115 (230)
T PF01946_consen   85 EY------------------------------GDGYYVADSVEFTSTLASKAIDAGA-------------------KIFN  115 (230)
T ss_dssp             E-------------------------------SSEEEES-HHHHHHHHHHHHHTTTE-------------------EEEE
T ss_pred             Ee------------------------------CCeEEEEcHHHHHHHHHHHHhcCCC-------------------EEEe
Confidence            00                              0012234455677778888877887                   6666


Q ss_pred             ccEEEEEeeeC-CeEEEEEEe-c---cCC-ceeeEEEEecEEEeecCCChhhhh
Q 008258          194 GHECVSVSATD-QCINVIASF-L---KEG-KCTERNIQCNILIGTDGAGSTVRK  241 (572)
Q Consensus       194 g~~v~~v~~~~-~~v~v~~~~-~---~~g-~~~~~~i~ad~vVgADG~~S~VR~  241 (572)
                      .+.++++.-.+ +.|.-.+.. .   ..| .-.+.+++|++||+|.|-.+.|-+
T Consensus       116 ~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~  169 (230)
T PF01946_consen  116 LTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVR  169 (230)
T ss_dssp             TEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTS
T ss_pred             eeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHH
Confidence            67777766555 443322210 0   011 113458999999999997776543

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.20  E-value=7.9e-09  Score=112.71  Aligned_cols=178  Identities=17%  Similarity=0.170  Sum_probs=98.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCCeeeeChhHHHHHHhhc-chHH-------HHHhcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLD-GLAE-------EIERSQPP  111 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~-~~~~a~~l~~rt~e~l~~l~-Gl~~-------~l~~~~~~  111 (572)
                      +.++||+|||||++|+++|+.|+++|++|+||||..... ..++...+-..+.+.+.... .+..       .+....+.
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~   83 (502)
T PRK13369          4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH   83 (502)
T ss_pred             CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence            456899999999999999999999999999999985332 12222222222333333210 1111       11121211


Q ss_pred             cccccceeeeeCCCC--Ce-----------------e---eeecCCC-----c--cccccccCCccccccChhhHHHHHH
Q 008258          112 VDLWRKFIYCTSVTG--PI-----------------L---GSVDHMQ-----P--QDFEKVVSPVSVAHFSQYKLNKLLL  162 (572)
Q Consensus       112 ~~~~~~~~~~~~~~G--~~-----------------~---~~~~~~~-----~--~~~~~~~sp~~~~~l~q~~L~~~L~  162 (572)
                      ......+....+...  ..                 +   ..++...     +  ..+.... .+....++...|...|.
T Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~-~~~dg~vd~~rl~~~l~  162 (502)
T PRK13369         84 IIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGF-EYSDCWVDDARLVVLNA  162 (502)
T ss_pred             cccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEE-EEcCeeecHHHHHHHHH
Confidence            100000110000000  00                 0   0000000     0  0000000 01112355677777788


Q ss_pred             HHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh-hhh
Q 008258          163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VRK  241 (572)
Q Consensus       163 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~-VR~  241 (572)
                      ..+.+.|+                   +++.+++|+++..+++.+.+++..   +.+++++++|++||.|+|++|. +.+
T Consensus       163 ~~a~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~---~~g~~~~i~a~~VVnAaG~wa~~l~~  220 (502)
T PRK13369        163 LDAAERGA-------------------TILTRTRCVSARREGGLWRVETRD---ADGETRTVRARALVNAAGPWVTDVIH  220 (502)
T ss_pred             HHHHHCCC-------------------EEecCcEEEEEEEcCCEEEEEEEe---CCCCEEEEEecEEEECCCccHHHHHh
Confidence            88888887                   889999999998887777777662   2234568999999999999885 444

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.17  E-value=3.1e-09  Score=111.67  Aligned_cols=36  Identities=19%  Similarity=0.361  Sum_probs=33.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ++||+|||||++|+++|+.|++.|.+|+||||....
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~   38 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP   38 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            489999999999999999999999999999998643

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.17  E-value=5.9e-09  Score=110.86  Aligned_cols=36  Identities=42%  Similarity=0.573  Sum_probs=32.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi-~v~viEr~~   76 (572)
                      ...+||+|||||++|+++|+.|+++ |. +|+|+||..
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            5668999999999999999999995 96 899999975

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.13  E-value=4.3e-10  Score=118.20  Aligned_cols=141  Identities=21%  Similarity=0.346  Sum_probs=76.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCCeeeeC----------------hhHHHHHHhhcch
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFIN----------------NRYALVFRKLDGL  101 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~------~~~a~~l~----------------~rt~e~l~~l~Gl  101 (572)
                      |||+|||||||||+||+.|++.|.+|+|+||.+.+..      .++.-..|                ......|+++ +.
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f-~~   79 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF-SP   79 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS--H
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC-CH
Confidence            6999999999999999999999999999999987631      12222222                1112333333 22


Q ss_pred             H---HHHHhcCCCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCc
Q 008258          102 A---EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT  178 (572)
Q Consensus       102 ~---~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~  178 (572)
                      .   +-+.+.+.+..        ...+|+..                |.   .-.-..+...|++.+.+.|+        
T Consensus        80 ~d~~~ff~~~Gv~~~--------~~~~gr~f----------------P~---s~~a~~Vv~~L~~~l~~~gv--------  124 (409)
T PF03486_consen   80 EDLIAFFEELGVPTK--------IEEDGRVF----------------PK---SDKASSVVDALLEELKRLGV--------  124 (409)
T ss_dssp             HHHHHHHHHTT--EE--------E-STTEEE----------------ET---T--HHHHHHHHHHHHHHHT---------
T ss_pred             HHHHHHHHhcCCeEE--------EcCCCEEC----------------CC---CCcHHHHHHHHHHHHHHcCC--------
Confidence            2   22223322211        01122211                11   11234677889999999887        


Q ss_pred             ccccccccccceEEeccEEEEEeeeCCe-EEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          179 EGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       179 ~~~~~~~~~~~~i~~g~~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                                 +++++++|.+++.++++ ..|+..   ++    .++.||.||-|.|..|.
T Consensus       125 -----------~i~~~~~V~~i~~~~~~~f~v~~~---~~----~~~~a~~vILAtGG~S~  167 (409)
T PF03486_consen  125 -----------EIHFNTRVKSIEKKEDGVFGVKTK---NG----GEYEADAVILATGGKSY  167 (409)
T ss_dssp             -----------EEE-S--EEEEEEETTEEEEEEET---TT----EEEEESEEEE----SSS
T ss_pred             -----------EEEeCCEeeeeeecCCceeEeecc---Cc----ccccCCEEEEecCCCCc
Confidence                       99999999999988877 555441   23    27899999999998884

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.12  E-value=1.2e-08  Score=108.52  Aligned_cols=70  Identities=16%  Similarity=0.251  Sum_probs=50.1

Q ss_pred             hhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecC
Q 008258          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (572)
Q Consensus       155 ~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG  234 (572)
                      ..+...|.+.+.+.|+                   +++++++|++++.+++.+++.+..  ++..+..+++||.||.|.|
T Consensus       197 ~~~~~~l~~~a~~~G~-------------------~i~~~~~V~~i~~~~~~~~v~~~~--~~~~~~~~i~a~~vV~a~G  255 (410)
T PRK12409        197 HKFTTGLAAACARLGV-------------------QFRYGQEVTSIKTDGGGVVLTVQP--SAEHPSRTLEFDGVVVCAG  255 (410)
T ss_pred             HHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEEeCCEEEEEEEc--CCCCccceEecCEEEECCC
Confidence            4566677888888887                   889999999999888877766542  2110112589999999999


Q ss_pred             CChh-hhhhcCC
Q 008258          235 AGST-VRKLVGI  245 (572)
Q Consensus       235 ~~S~-VR~~lg~  245 (572)
                      +.|. +.+.++.
T Consensus       256 ~~s~~l~~~~~~  267 (410)
T PRK12409        256 VGSRALAAMLGD  267 (410)
T ss_pred             cChHHHHHHhCC
Confidence            9975 4444443

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.11  E-value=2.8e-09  Score=106.94  Aligned_cols=58  Identities=19%  Similarity=0.066  Sum_probs=45.6

Q ss_pred             cEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCc--hhh--HhhHHHhhhHHH
Q 008258          360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP--ASI--LNTYETERKPIA  417 (572)
Q Consensus       360 rV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~--~~~--L~~Y~~eR~~~a  417 (572)
                      .=+|||=+|..++---=-|..+||......|+.+-..+++.+.  ...  +.+|+..-+.--
T Consensus       385 GG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~  446 (621)
T KOG2415|consen  385 GGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSY  446 (621)
T ss_pred             CceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhH
Confidence            3378999999999888899999999999999999888876542  222  448988766543

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.11  E-value=4.2e-08  Score=107.05  Aligned_cols=66  Identities=17%  Similarity=0.159  Sum_probs=49.7

Q ss_pred             cChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEe
Q 008258          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (572)
Q Consensus       152 l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVg  231 (572)
                      ++-..|...|.+.+.+.|+                   +++.+++|+++..+++.+.+++.+..+|  +..+++|+.||.
T Consensus       152 vd~~rl~~~l~~~A~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~~~~g--~~~~i~a~~VVn  210 (508)
T PRK12266        152 VDDARLVVLNARDAAERGA-------------------EILTRTRVVSARRENGLWHVTLEDTATG--KRYTVRARALVN  210 (508)
T ss_pred             cCHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEeCCEEEEEEEEcCCC--CEEEEEcCEEEE
Confidence            4445666667777778776                   8899999999988777777776632233  345799999999


Q ss_pred             ecCCChh
Q 008258          232 TDGAGST  238 (572)
Q Consensus       232 ADG~~S~  238 (572)
                      |+|+.|.
T Consensus       211 AaG~wa~  217 (508)
T PRK12266        211 AAGPWVK  217 (508)
T ss_pred             CCCccHH
Confidence            9999874

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.10  E-value=2.5e-09  Score=113.21  Aligned_cols=69  Identities=17%  Similarity=0.286  Sum_probs=53.1

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      .++...+.+.|.+.+.+.|+                   ++++++++++++.+++++.++..   ++     +++||.||
T Consensus       145 ~vd~~~l~~aL~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~~~---~g-----~i~ad~vV  197 (393)
T PRK11728        145 IVDYRAVAEAMAELIQARGG-------------------EIRLGAEVTALDEHANGVVVRTT---QG-----EYEARTLI  197 (393)
T ss_pred             EECHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEecCCeEEEEEC---CC-----EEEeCEEE
Confidence            44556788888888888887                   88999999999887777655442   33     58999999


Q ss_pred             eecCCChh-hhhhcCCc
Q 008258          231 GTDGAGST-VRKLVGID  246 (572)
Q Consensus       231 gADG~~S~-VR~~lg~~  246 (572)
                      .|+|.+|. +.+.+|.+
T Consensus       198 ~A~G~~s~~l~~~~g~~  214 (393)
T PRK11728        198 NCAGLMSDRLAKMAGLE  214 (393)
T ss_pred             ECCCcchHHHHHHhCCC
Confidence            99999984 56666643

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.08  E-value=1.1e-08  Score=110.63  Aligned_cols=76  Identities=20%  Similarity=0.214  Sum_probs=54.3

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeC-CeEEEEEEeccCCceeeEEEEecEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCNIL  229 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~-~~v~v~~~~~~~g~~~~~~i~ad~v  229 (572)
                      .++-..+...|.+.+.+.|+                   +++++++|++++.++ +++++++...++|  ...+++||+|
T Consensus       174 ~Vdp~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~i~~~~~~~v~v~~~~~~~g--~~~~i~A~~V  232 (483)
T TIGR01320       174 DVDFGALTKQLLGYLVQNGT-------------------TIRFGHEVRNLKRQSDGSWTVTVKNTRTG--GKRTLNTRFV  232 (483)
T ss_pred             EECHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEcCCCeEEEEEeeccCC--ceEEEECCEE
Confidence            45667788888898888887                   899999999998865 4566665422233  2236899998


Q ss_pred             EeecCC-ChhhhhhcCCcc
Q 008258          230 IGTDGA-GSTVRKLVGIDL  247 (572)
Q Consensus       230 VgADG~-~S~VR~~lg~~~  247 (572)
                      |.|-|. .+.+++.+|+..
T Consensus       233 V~AAG~~s~~La~~~Gi~~  251 (483)
T TIGR01320       233 FVGAGGGALPLLQKSGIPE  251 (483)
T ss_pred             EECCCcchHHHHHHcCCCc
Confidence            555555 555888888764

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.05  E-value=4.1e-09  Score=113.08  Aligned_cols=154  Identities=19%  Similarity=0.173  Sum_probs=89.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcch-----------HHHHHhcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGL-----------AEEIERSQP  110 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl-----------~~~l~~~~~  110 (572)
                      ...+|+||||||+||++|..|++.|++|+|+||.+..   ++....++++-.  +.+ ++           .+.+... .
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v---GG~W~~~~~~~~--d~~-~~~~~~~~~~s~~Y~~L~tn-~   81 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV---GGLWVYTPKSES--DPL-SLDPTRSIVHSSVYESLRTN-L   81 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC---cceeecCCCcCC--Ccc-ccCCCCcccchhhhhhhhcc-C
Confidence            3478999999999999999999999999999998765   222222222100  001 11           1111110 0


Q ss_pred             CcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccce
Q 008258          111 PVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE  190 (572)
Q Consensus       111 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (572)
                      |.+.+              ...+......+.. .......-.+...+.+.|.+.++..|+                 ...
T Consensus        82 p~~~m--------------~f~dfp~~~~~~~-~~~~~~~fp~~~ev~~YL~~~a~~fgl-----------------~~~  129 (461)
T PLN02172         82 PRECM--------------GYRDFPFVPRFDD-ESRDSRRYPSHREVLAYLQDFAREFKI-----------------EEM  129 (461)
T ss_pred             CHhhc--------------cCCCCCCCccccc-ccCcCCCCCCHHHHHHHHHHHHHHcCC-----------------cce
Confidence            00000              0000000000000 000000112345678888888888876                 124


Q ss_pred             EEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       191 i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      |+++++|++++..++.++|++..   +.....+..+|.||.|.|..+
T Consensus       130 I~~~t~V~~V~~~~~~w~V~~~~---~~~~~~~~~~d~VIvAtG~~~  173 (461)
T PLN02172        130 VRFETEVVRVEPVDGKWRVQSKN---SGGFSKDEIFDAVVVCNGHYT  173 (461)
T ss_pred             EEecCEEEEEeecCCeEEEEEEc---CCCceEEEEcCEEEEeccCCC
Confidence            89999999999888888888762   211233567999999999765

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.05  E-value=3.8e-09  Score=114.60  Aligned_cols=149  Identities=15%  Similarity=0.171  Sum_probs=85.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC-CCCCCCe---eeeC-hhHHHHHHhhcchHHHHHh-cCCCccc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA-FSTHPQA---HFIN-NRYALVFRKLDGLAEEIER-SQPPVDL  114 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~-~~~~~~a---~~l~-~rt~e~l~~l~Gl~~~l~~-~~~~~~~  114 (572)
                      +.++||+||||||||+.+|+.+++.|.+|+|||++.. +...++.   .++. ....+-++.++|+...+.. .+.+.  
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~--   79 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQF--   79 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCce--
Confidence            3469999999999999999999999999999998752 2111111   1111 1112333444333222221 11110  


Q ss_pred             ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (572)
Q Consensus       115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g  194 (572)
                          .......|...              .++  ...+++..+...|.+.+.+.+                  ++++ +.
T Consensus        80 ----r~ln~skGpAV--------------~s~--RaQiDr~ly~kaL~e~L~~~~------------------nV~I-~q  120 (618)
T PRK05192         80 ----RMLNTSKGPAV--------------RAL--RAQADRKLYRAAMREILENQP------------------NLDL-FQ  120 (618)
T ss_pred             ----eecccCCCCce--------------eCc--HHhcCHHHHHHHHHHHHHcCC------------------CcEE-EE
Confidence                00000111100              011  135677778888888877652                  1255 45


Q ss_pred             cEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          195 HECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       195 ~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      .+++++..+++.+. |.+.   +|.    .+.|+.||.|+|..+
T Consensus       121 ~~V~~Li~e~grV~GV~t~---dG~----~I~Ak~VIlATGTFL  157 (618)
T PRK05192        121 GEVEDLIVENGRVVGVVTQ---DGL----EFRAKAVVLTTGTFL  157 (618)
T ss_pred             eEEEEEEecCCEEEEEEEC---CCC----EEECCEEEEeeCcch
Confidence            67888776666654 3332   453    699999999999765

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.04  E-value=2.1e-09  Score=111.57  Aligned_cols=68  Identities=24%  Similarity=0.336  Sum_probs=52.0

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~v  229 (572)
                      .++-..+.+.|.+.+.+.|+                   +++.+++|++++.++++++ |.+.   +|     +++||.|
T Consensus       143 ~i~~~~l~~~l~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~v~gv~~~---~g-----~i~ad~v  195 (358)
T PF01266_consen  143 VIDPRRLIQALAAEAQRAGV-------------------EIRTGTEVTSIDVDGGRVTGVRTS---DG-----EIRADRV  195 (358)
T ss_dssp             EEEHHHHHHHHHHHHHHTT--------------------EEEESEEEEEEEEETTEEEEEEET---TE-----EEEECEE
T ss_pred             cccccchhhhhHHHHHHhhh-------------------hccccccccchhhccccccccccc---cc-----cccccee
Confidence            34557888889999999887                   9999999999999999987 6654   44     5899999


Q ss_pred             EeecCCChhh-hhhcCC
Q 008258          230 IGTDGAGSTV-RKLVGI  245 (572)
Q Consensus       230 VgADG~~S~V-R~~lg~  245 (572)
                      |.|.|.+|.- .+.++.
T Consensus       196 V~a~G~~s~~l~~~~~~  212 (358)
T PF01266_consen  196 VLAAGAWSPQLLPLLGL  212 (358)
T ss_dssp             EE--GGGHHHHHHTTTT
T ss_pred             Eecccccceeeeecccc
Confidence            9999998864 444554

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.02  E-value=3.4e-09  Score=110.47  Aligned_cols=181  Identities=15%  Similarity=0.232  Sum_probs=100.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCCC---------eeeeChhHHH--HHHhhc-chHHHHHh
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTHPQ---------AHFINNRYAL--VFRKLD-GLAEEIER  107 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~~~~~~---------a~~l~~rt~e--~l~~l~-Gl~~~l~~  107 (572)
                      ..+||+|||||+.|+++|..|++++  ++|.|+||...+.....         +....+..+.  +-..-. -..+-.++
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999998  99999999987643211         1112222111  111000 01111122


Q ss_pred             cCCCcccccceeeeeCCC---------------CCe-eeeecCCCccccccc---------cCCccccccChhhHHHHHH
Q 008258          108 SQPPVDLWRKFIYCTSVT---------------GPI-LGSVDHMQPQDFEKV---------VSPVSVAHFSQYKLNKLLL  162 (572)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~---------------G~~-~~~~~~~~~~~~~~~---------~sp~~~~~l~q~~L~~~L~  162 (572)
                      ...|...-..+...++..               |-. +...+.......+..         ..|. ...++-..+...|.
T Consensus        82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~-~giV~~~~~t~~l~  160 (429)
T COG0579          82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPS-GGIVDPGELTRALA  160 (429)
T ss_pred             hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCC-CceEcHHHHHHHHH
Confidence            222211111111111100               100 000000000001110         1111 23344566777888


Q ss_pred             HHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh-hhh
Q 008258          163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VRK  241 (572)
Q Consensus       163 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~-VR~  241 (572)
                      +.+...|+                   +++++++|+.++..++++++...  .+|+  +. ++|++||.|-|..|. +.+
T Consensus       161 e~a~~~g~-------------------~i~ln~eV~~i~~~~dg~~~~~~--~~g~--~~-~~ak~Vin~AGl~Ad~la~  216 (429)
T COG0579         161 EEAQANGV-------------------ELRLNTEVTGIEKQSDGVFVLNT--SNGE--ET-LEAKFVINAAGLYADPLAQ  216 (429)
T ss_pred             HHHHHcCC-------------------EEEecCeeeEEEEeCCceEEEEe--cCCc--EE-EEeeEEEECCchhHHHHHH
Confidence            88888887                   99999999999999986444333  2442  22 999999999999886 566


Q ss_pred             hcCCcc
Q 008258          242 LVGIDL  247 (572)
Q Consensus       242 ~lg~~~  247 (572)
                      ..|++.
T Consensus       217 ~~g~~~  222 (429)
T COG0579         217 MAGIPE  222 (429)
T ss_pred             HhCCCc
Confidence            667654

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.02  E-value=1.4e-09  Score=103.83  Aligned_cols=135  Identities=24%  Similarity=0.301  Sum_probs=75.9

Q ss_pred             EEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcC---CCcccccceeeee
Q 008258           47 LIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQ---PPVDLWRKFIYCT  122 (572)
Q Consensus        47 lIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~---~~~~~~~~~~~~~  122 (572)
                      +||||||+||++|..|.+.|++ ++||||.+.+.                    |.+.......   .|. ....     
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~G--------------------g~w~~~~~~~~~~~~~-~~~~-----   54 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPG--------------------GVWRRYYSYTRLHSPS-FFSS-----   54 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSST--------------------THHHCH-TTTT-BSSS-CCTG-----
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCC--------------------CeeEEeCCCCccccCc-cccc-----
Confidence            6999999999999999999999 99999987752                    2222111000   000 0000     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                       ..+  +.............  .+......++..+.+.|.+.+++.+.                   +++++++|++++.
T Consensus        55 -~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~yl~~~~~~~~l-------------------~i~~~~~V~~v~~  110 (203)
T PF13738_consen   55 -DFG--LPDFESFSFDDSPE--WRWPHDFPSGEEVLDYLQEYAERFGL-------------------EIRFNTRVESVRR  110 (203)
T ss_dssp             -GSS----CCCHSCHHHHHH--HHHSBSSEBHHHHHHHHHHHHHHTTG-------------------GEETS--EEEEEE
T ss_pred             -ccc--CCcccccccccCCC--CCCCcccCCHHHHHHHHHHHHhhcCc-------------------ccccCCEEEEEEE
Confidence             000  00000000000000  00011224567778888888888876                   6899999999999


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +++++++++.   ++    ++++||.||.|.|..|.
T Consensus       111 ~~~~w~v~~~---~~----~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen  111 DGDGWTVTTR---DG----RTIRADRVVLATGHYSH  139 (203)
T ss_dssp             ETTTEEEEET---TS-----EEEEEEEEE---SSCS
T ss_pred             eccEEEEEEE---ec----ceeeeeeEEEeeeccCC
Confidence            9999888875   44    36889999999998664

...

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.99  E-value=3.8e-10  Score=120.50  Aligned_cols=154  Identities=23%  Similarity=0.309  Sum_probs=37.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----CeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~----~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      |||||||||+|+++|+.+++.|.+|+||||.+.+-...    ..........+  ...+|+.+++.........      
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~--~~~~gi~~e~~~~~~~~~~------   72 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED--QVIGGIFREFLNRLRARGG------   72 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH--HHHHHHHHHHHHST-----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh--ccCCCHHHHHHHHHhhhcc------
Confidence            89999999999999999999999999999998763211    11111112222  1113666666553221100      


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                            ....  .     .    ........+....+..+|.+.+.+.|+                   ++++++.++++
T Consensus        73 ------~~~~--~-----~----~~~~~~~~~~~~~~~~~l~~~l~e~gv-------------------~v~~~t~v~~v  116 (428)
T PF12831_consen   73 ------YPQE--D-----R----YGWVSNVPFDPEVFKAVLDEMLAEAGV-------------------EVLLGTRVVDV  116 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------cccc--c-----c----ccccccccccccccccccccccccccc-------------------ccccccccccc
Confidence                  0000  0     0    000001234445566667777767676                   89999999999


Q ss_pred             eeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCcc
Q 008258          201 SATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL  247 (572)
Q Consensus       201 ~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~  247 (572)
                      ..+++.++ |++... +|   ..+++|+++|+|+|- ..+-...|.++
T Consensus       117 ~~~~~~i~~V~~~~~-~g---~~~i~A~~~IDaTG~-g~l~~~aG~~~  159 (428)
T PF12831_consen  117 IRDGGRITGVIVETK-SG---RKEIRAKVFIDATGD-GDLAALAGAPY  159 (428)
T ss_dssp             ------------------------------------------------
T ss_pred             ccccccccccccccc-cc---ccccccccccccccc-ccccccccccc
Confidence            88765543 333311 22   458999999999995 55666667654

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.98  E-value=1.3e-08  Score=110.05  Aligned_cols=75  Identities=25%  Similarity=0.403  Sum_probs=53.2

Q ss_pred             ccChhhHHHHHHHHHHhcC-ceeeccCCcccccccccccceEEeccEEEEEeeeCCe-EEEEEEeccCCceeeEEEEecE
Q 008258          151 HFSQYKLNKLLLKQLEKLN-FKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNI  228 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~  228 (572)
                      .++...+.+.|.+.+.+.| +                   +++++++|++++.++++ +++++...++|  ...+++|++
T Consensus       179 ~Vd~~~l~~aL~~~a~~~Ggv-------------------~i~~~teV~~I~~~~dg~~~v~~~~~~~G--~~~~i~A~~  237 (494)
T PRK05257        179 DVNFGALTRQLVGYLQKQGNF-------------------ELQLGHEVRDIKRNDDGSWTVTVKDLKTG--EKRTVRAKF  237 (494)
T ss_pred             EECHHHHHHHHHHHHHhCCCe-------------------EEEeCCEEEEEEECCCCCEEEEEEEcCCC--ceEEEEcCE
Confidence            4556678888888888775 5                   89999999999986664 66665422233  223689999


Q ss_pred             EEeecCCCh-hhhhhcCCc
Q 008258          229 LIGTDGAGS-TVRKLVGID  246 (572)
Q Consensus       229 vVgADG~~S-~VR~~lg~~  246 (572)
                      ||.|.|++| .+++.+|++
T Consensus       238 VVvaAGg~s~~L~~~~Gi~  256 (494)
T PRK05257        238 VFIGAGGGALPLLQKSGIP  256 (494)
T ss_pred             EEECCCcchHHHHHHcCCC
Confidence            876666665 477777765

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.98  E-value=7.1e-08  Score=102.86  Aligned_cols=33  Identities=21%  Similarity=0.552  Sum_probs=31.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ||+|||||++||++|+.|+++|.+|+|+||...
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            799999999999999999999999999999754

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.93  E-value=1.4e-08  Score=109.39  Aligned_cols=70  Identities=14%  Similarity=0.220  Sum_probs=51.1

Q ss_pred             ccChhhHHHHHHHHHHh----cCceeeccCCcccccccccccceEEeccEEEEEeee-CCeEEEEEEeccCCceeeEEEE
Q 008258          151 HFSQYKLNKLLLKQLEK----LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCINVIASFLKEGKCTERNIQ  225 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~-~~~v~v~~~~~~~g~~~~~~i~  225 (572)
                      .++-..|.+.|.+.+.+    .|.                 +++++++++|++++.+ ++.+.|+..   +|     +++
T Consensus       207 ~Vd~~~L~~al~~~a~~~~~~~G~-----------------~v~i~~~t~V~~I~~~~~~~~~V~T~---~G-----~i~  261 (497)
T PTZ00383        207 TVDYQKLSESFVKHARRDALVPGK-----------------KISINLNTEVLNIERSNDSLYKIHTN---RG-----EIR  261 (497)
T ss_pred             EECHHHHHHHHHHHHHhhhhhcCC-----------------CEEEEeCCEEEEEEecCCCeEEEEEC---CC-----EEE
Confidence            45556777788888877    663                 1378999999999987 444555432   44     589


Q ss_pred             ecEEEeecCCChh-hhhhcCC
Q 008258          226 CNILIGTDGAGST-VRKLVGI  245 (572)
Q Consensus       226 ad~vVgADG~~S~-VR~~lg~  245 (572)
                      ||+||-|-|++|. +.+.+|+
T Consensus       262 A~~VVvaAG~~S~~La~~~Gi  282 (497)
T PTZ00383        262 ARFVVVSACGYSLLFAQKMGY  282 (497)
T ss_pred             eCEEEECcChhHHHHHHHhCC
Confidence            9999999999985 5666664

>PRK07233 hypothetical protein; Provisional

Probab=98.91  E-value=6.5e-07  Score=95.91  Aligned_cols=59  Identities=25%  Similarity=0.409  Sum_probs=43.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC------------Ceee---eChhHHHHHHhhcchHHH
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP------------QAHF---INNRYALVFRKLDGLAEE  104 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~------------~a~~---l~~rt~e~l~~l~Gl~~~  104 (572)
                      +|+|||||++||++|..|+++|++|+|+|+++.+.-.-            .++.   -.+...++++++ |+.+.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~l-g~~~~   74 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDEL-GLEDK   74 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHc-CCCCc
Confidence            59999999999999999999999999999998652110            0111   135567777777 76543

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.90  E-value=5.4e-08  Score=107.09  Aligned_cols=74  Identities=12%  Similarity=0.211  Sum_probs=52.9

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~v  229 (572)
                      .++-..|...+...+.+.|+                   +++.+++|+++..++++++ |++.+..++  +..+++|+.|
T Consensus       145 ~vdp~rl~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~d~~~g--~~~~i~A~~V  203 (546)
T PRK11101        145 TVDPFRLTAANMLDAKEHGA-------------------QILTYHEVTGLIREGDTVCGVRVRDHLTG--ETQEIHAPVV  203 (546)
T ss_pred             EECHHHHHHHHHHHHHhCCC-------------------EEEeccEEEEEEEcCCeEEEEEEEEcCCC--cEEEEECCEE
Confidence            45556677777788888887                   8899999999988776654 455422223  2347999999


Q ss_pred             EeecCCChh-hhhhcCC
Q 008258          230 IGTDGAGST-VRKLVGI  245 (572)
Q Consensus       230 VgADG~~S~-VR~~lg~  245 (572)
                      |.|.|+.|. +.+..+.
T Consensus       204 VnAaG~wa~~l~~~~g~  220 (546)
T PRK11101        204 VNAAGIWGQHIAEYADL  220 (546)
T ss_pred             EECCChhHHHHHHhcCC
Confidence            999999885 5554553

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.89  E-value=7.1e-08  Score=103.75  Aligned_cols=76  Identities=22%  Similarity=0.264  Sum_probs=54.0

Q ss_pred             cccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEEEEeee-CCeEEEEEEeccCCceeeEEEEec
Q 008258          150 AHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCINVIASFLKEGKCTERNIQCN  227 (572)
Q Consensus       150 ~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~-~~~v~v~~~~~~~g~~~~~~i~ad  227 (572)
                      ..++...|.+.|.+.+.+. |+                   +++++++|++++.+ ++++++++...+++  +..+++||
T Consensus       179 ~~VD~~~L~~aL~~~l~~~~Gv-------------------~i~~~~~V~~I~~~~d~~w~v~v~~t~~g--~~~~i~Ad  237 (497)
T PRK13339        179 TDVNFGALTRKLAKHLESHPNA-------------------QVKYNHEVVDLERLSDGGWEVTVKDRNTG--EKREQVAD  237 (497)
T ss_pred             eecCHHHHHHHHHHHHHhCCCc-------------------EEEeCCEEEEEEECCCCCEEEEEEecCCC--ceEEEEcC
Confidence            4567777888888887543 55                   89999999999877 66777765422223  12258999


Q ss_pred             EEEeecCCChh-hhhhcCCc
Q 008258          228 ILIGTDGAGST-VRKLVGID  246 (572)
Q Consensus       228 ~vVgADG~~S~-VR~~lg~~  246 (572)
                      +||-|-|++|. +.+.+|+.
T Consensus       238 ~VV~AAGawS~~La~~~Gi~  257 (497)
T PRK13339        238 YVFIGAGGGAIPLLQKSGIP  257 (497)
T ss_pred             EEEECCCcchHHHHHHcCCC
Confidence            99877777774 67777765

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.89  E-value=1.3e-08  Score=114.72  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=33.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..||+|||||++|+++|+.|+++|++|+|+||...+
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~  295 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAP  295 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence            479999999999999999999999999999998543

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.88  E-value=6.5e-07  Score=95.55  Aligned_cols=183  Identities=15%  Similarity=0.177  Sum_probs=105.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCCeeeeChhHHHHHHhhc-c-hHHHH------HhcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLD-G-LAEEI------ERSQPP  111 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~-~~~~a~~l~~rt~e~l~~l~-G-l~~~l------~~~~~~  111 (572)
                      +..+||+|||||+.|+-+|+-++.+|++|+|+|++.--. ..++.+.+-+.+++.|.+.. . +.+.+      .+.++.
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH   89 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH   89 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence            467999999999999999999999999999999987542 33455555555666655431 1 11222      222222


Q ss_pred             cccccceee--ee----------------CCCCC-e-eeeecCCCcc---ccccccC--------CccccccChhhHHHH
Q 008258          112 VDLWRKFIY--CT----------------SVTGP-I-LGSVDHMQPQ---DFEKVVS--------PVSVAHFSQYKLNKL  160 (572)
Q Consensus       112 ~~~~~~~~~--~~----------------~~~G~-~-~~~~~~~~~~---~~~~~~s--------p~~~~~l~q~~L~~~  160 (572)
                      +..-..+..  ..                ...|. . ..........   .......        -+.-+.++-.+|.-.
T Consensus        90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~  169 (532)
T COG0578          90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA  169 (532)
T ss_pred             ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence            211000110  00                01110 0 0000000000   0000000        011133444566666


Q ss_pred             HHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh-h
Q 008258          161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-V  239 (572)
Q Consensus       161 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~-V  239 (572)
                      +...+.+.|.                   +++..++|+++..+++-+-|.+.+..+|  ++++++|+.||.|.|+.+- +
T Consensus       170 ~a~~A~~~Ga-------------------~il~~~~v~~~~re~~v~gV~~~D~~tg--~~~~ira~~VVNAaGpW~d~i  228 (532)
T COG0578         170 NARDAAEHGA-------------------EILTYTRVESLRREGGVWGVEVEDRETG--ETYEIRARAVVNAAGPWVDEI  228 (532)
T ss_pred             HHHHHHhccc-------------------chhhcceeeeeeecCCEEEEEEEecCCC--cEEEEEcCEEEECCCccHHHH
Confidence            6677777776                   7888889999988877445666644444  6789999999999999886 4


Q ss_pred             hhhcC
Q 008258          240 RKLVG  244 (572)
Q Consensus       240 R~~lg  244 (572)
                      ++..+
T Consensus       229 ~~~~~  233 (532)
T COG0578         229 LEMAG  233 (532)
T ss_pred             HHhhc
Confidence            66554

>TIGR00275 flavoprotein, HI0933 family

Probab=98.87  E-value=3.5e-09  Score=112.02  Aligned_cols=149  Identities=25%  Similarity=0.312  Sum_probs=83.3

Q ss_pred             EEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCCeeeeChhHH-HHHHhhcc----hHHHHHhcCCCcccc
Q 008258           47 LIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRYA-LVFRKLDG----LAEEIERSQPPVDLW  115 (572)
Q Consensus        47 lIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~------~~~a~~l~~rt~-e~l~~l~G----l~~~l~~~~~~~~~~  115 (572)
                      +||||||+||++|+.|++.|.+|+|+||.+.+..      .++....+.... +.++..+.    +...+.... +.+..
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~-~~d~~   79 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFS-NKDLI   79 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCC-HHHHH
Confidence            6999999999999999999999999999876522      112222222211 11122211    111111110 00000


Q ss_pred             cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (572)
Q Consensus       116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~  195 (572)
                      ..+   . ..|-.+...+. .  .    .-|   ..-....+.+.|.+.+++.|+                   ++++++
T Consensus        80 ~~~---~-~~Gv~~~~~~~-g--~----~~p---~~~~a~~v~~~L~~~l~~~gv-------------------~i~~~~  126 (400)
T TIGR00275        80 DFF---E-SLGLELKVEED-G--R----VFP---CSDSAADVLDALLNELKELGV-------------------EILTNS  126 (400)
T ss_pred             HHH---H-HcCCeeEEecC-C--E----eEC---CCCCHHHHHHHHHHHHHHCCC-------------------EEEeCC
Confidence            000   0 01111110000 0  0    001   011235677788888888776                   899999


Q ss_pred             EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++++++++++.+.++.    ++.    ++.+|.||.|+|..|
T Consensus       127 ~V~~i~~~~~~~~v~~----~~~----~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       127 KVKSIKKDDNGFGVET----SGG----EYEADKVILATGGLS  160 (400)
T ss_pred             EEEEEEecCCeEEEEE----CCc----EEEcCEEEECCCCcc
Confidence            9999988776655543    222    588999999999988

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.86  E-value=1.5e-07  Score=104.93  Aligned_cols=73  Identities=19%  Similarity=0.179  Sum_probs=52.7

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeC--CeEE-EEEEeccCCceeeEEEEec
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD--QCIN-VIASFLKEGKCTERNIQCN  227 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~--~~v~-v~~~~~~~g~~~~~~i~ad  227 (572)
                      .++-..|...|.+.+.+.|+                   +++.+++|+++..++  +.++ |++.+..++  .++++++|
T Consensus       228 ~vdp~rl~~al~~~A~~~Ga-------------------~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg--~~~~i~a~  286 (627)
T PLN02464        228 QMNDSRLNVALACTAALAGA-------------------AVLNYAEVVSLIKDESTGRIVGARVRDNLTG--KEFDVYAK  286 (627)
T ss_pred             EEcHHHHHHHHHHHHHhCCc-------------------EEEeccEEEEEEEecCCCcEEEEEEEECCCC--cEEEEEeC
Confidence            34556788888888888887                   888999999988763  4443 444422233  34578999


Q ss_pred             EEEeecCCChh-hhhhcC
Q 008258          228 ILIGTDGAGST-VRKLVG  244 (572)
Q Consensus       228 ~vVgADG~~S~-VR~~lg  244 (572)
                      .||.|.|+.|. +++.++
T Consensus       287 ~VVnAaGaws~~l~~~~g  304 (627)
T PLN02464        287 VVVNAAGPFCDEVRKMAD  304 (627)
T ss_pred             EEEECCCHhHHHHHHhcc
Confidence            99999999986 666664

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.83  E-value=3.1e-08  Score=100.45  Aligned_cols=112  Identities=25%  Similarity=0.361  Sum_probs=75.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      +||+||||||+|+++|..|++.|++|+|||+.+ +   + +.....          .          ..   ..      
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~---g-g~~~~~----------~----------~~---~~------   46 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-P---G-GQLTTT----------T----------EV---EN------   46 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-C---C-cceeec----------c----------cc---cc------
Confidence            589999999999999999999999999999875 2   1 100000          0          00   00      


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                      .                     |.....++...+...+.+.+.+.|+                   ++++ .++++++.+
T Consensus        47 ~---------------------~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~~~~-~~v~~v~~~   85 (300)
T TIGR01292        47 Y---------------------PGFPEGISGPELMEKMKEQAVKFGA-------------------EIIY-EEVIKVDLS   85 (300)
T ss_pred             c---------------------CCCCCCCChHHHHHHHHHHHHHcCC-------------------eEEE-EEEEEEEec
Confidence            0                     0000012223455566777777776                   7777 789999887


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++.++++..   ++.    ++++|+||.|.|...
T Consensus        86 ~~~~~v~~~---~~~----~~~~d~liiAtG~~~  112 (300)
T TIGR01292        86 DRPFKVKTG---DGK----EYTAKAVIIATGASA  112 (300)
T ss_pred             CCeeEEEeC---CCC----EEEeCEEEECCCCCc
Confidence            777766654   342    689999999999854

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.82  E-value=2.8e-08  Score=107.68  Aligned_cols=37  Identities=24%  Similarity=0.432  Sum_probs=34.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..++||||||||++||++|+.+++.|.+|+||||.+.
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3468999999999999999999999999999999864

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.80  E-value=1.4e-07  Score=102.88  Aligned_cols=38  Identities=29%  Similarity=0.406  Sum_probs=35.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++||||||||++|+++|+.+++.|.+|+||||.+..
T Consensus        59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~   96 (506)
T PRK06481         59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA   96 (506)
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            34789999999999999999999999999999998764

>PLN02661 Putative thiazole synthesis

Probab=98.79  E-value=1.1e-07  Score=96.82  Aligned_cols=38  Identities=34%  Similarity=0.453  Sum_probs=34.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~   78 (572)
                      ..++||+|||||++|+++|+.|++. |.+|+||||...+
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~  128 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP  128 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence            3468999999999999999999986 8999999997665

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.79  E-value=2.2e-07  Score=102.11  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=34.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++||||||+|+|||++|+.+++.|.+|+|+||.+..
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~   51 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD   51 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence            45689999999999999999999999999999998754

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.78  E-value=5.4e-08  Score=104.04  Aligned_cols=40  Identities=28%  Similarity=0.440  Sum_probs=36.6

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~~   78 (572)
                      +.+..+||+|||||++|+++|..|.+.|++ ++|+||+..+
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~   44 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV   44 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence            345678999999999999999999999999 9999999876

>PRK07121 hypothetical protein; Validated

Probab=98.77  E-value=7.8e-08  Score=104.80  Aligned_cols=38  Identities=26%  Similarity=0.394  Sum_probs=35.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++||||||||.+||++|+.+++.|.+|+||||.+..
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~   55 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA   55 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            45789999999999999999999999999999998764

>TIGR00551 nadB L-aspartate oxidase

Probab=98.77  E-value=1.5e-07  Score=102.28  Aligned_cols=64  Identities=13%  Similarity=0.150  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHh-cCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEee
Q 008258          155 YKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT  232 (572)
Q Consensus       155 ~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgA  232 (572)
                      ..+.+.|.+.+.+ .++                   +++++++++++..+++.+. +.+..  .+  ....++++.||.|
T Consensus       128 ~~l~~~L~~~~~~~~gi-------------------~i~~~~~v~~l~~~~g~v~Gv~~~~--~~--~~~~i~A~~VVlA  184 (488)
T TIGR00551       128 REVITTLVKKALNHPNI-------------------RIIEGENALDLLIETGRVVGVWVWN--RE--TVETCHADAVVLA  184 (488)
T ss_pred             HHHHHHHHHHHHhcCCc-------------------EEEECeEeeeeeccCCEEEEEEEEE--CC--cEEEEEcCEEEEC
Confidence            4677788888876 455                   8999999999987666554 33431  22  2347899999999


Q ss_pred             cCCChhhhh
Q 008258          233 DGAGSTVRK  241 (572)
Q Consensus       233 DG~~S~VR~  241 (572)
                      +|..|.+..
T Consensus       185 tGG~~~~~~  193 (488)
T TIGR00551       185 TGGAGKLYQ  193 (488)
T ss_pred             CCcccCCCC
Confidence            999997644

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.77  E-value=5.7e-08  Score=106.43  Aligned_cols=114  Identities=19%  Similarity=0.352  Sum_probs=79.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ...+||+||||||+|+++|..|++.|++|+|+|+...      +...        +.. ++.              .   
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~G------G~~~--------~~~-~~~--------------~---  256 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFG------GQVL--------DTM-GIE--------------N---  256 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------Ceee--------ccC-ccc--------------c---
Confidence            4468999999999999999999999999999975311      1000        000 000              0   


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                         ..+             +     +    ...-..+...|.+.+.+.|+                   +++++++++++
T Consensus       257 ---~~~-------------~-----~----~~~~~~l~~~l~~~~~~~gv-------------------~i~~~~~V~~I  292 (517)
T PRK15317        257 ---FIS-------------V-----P----ETEGPKLAAALEEHVKEYDV-------------------DIMNLQRASKL  292 (517)
T ss_pred             ---cCC-------------C-----C----CCCHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEE
Confidence               000             0     0    11234566777888888776                   88889999999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +..++.+++++.   +|.    ++++|.||.|+|+++
T Consensus       293 ~~~~~~~~V~~~---~g~----~i~a~~vViAtG~~~  322 (517)
T PRK15317        293 EPAAGLIEVELA---NGA----VLKAKTVILATGARW  322 (517)
T ss_pred             EecCCeEEEEEC---CCC----EEEcCEEEECCCCCc
Confidence            887777777654   443    588999999999975

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.76  E-value=1.1e-06  Score=95.22  Aligned_cols=60  Identities=28%  Similarity=0.457  Sum_probs=44.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCC------------CCeeee---ChhHHHHHHhhcchHH
Q 008258           45 PVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTH------------PQAHFI---NNRYALVFRKLDGLAE  103 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~------Gi~v~viEr~~~~~~~------------~~a~~l---~~rt~e~l~~l~Gl~~  103 (572)
                      +|+|||||++||++|..|++.      |.+|+|+|+++.+--+            -.++.+   .+..+++++++ |+.+
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~l-gl~~   81 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDL-NLEE   81 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHc-CCcc
Confidence            699999999999999999986      4899999998765211            011112   35677888888 8765


Q ss_pred             HH
Q 008258          104 EI  105 (572)
Q Consensus       104 ~l  105 (572)
                      .+
T Consensus        82 ~~   83 (463)
T PRK12416         82 EM   83 (463)
T ss_pred             ce
Confidence            54

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.75  E-value=3.8e-06  Score=90.55  Aligned_cols=59  Identities=25%  Similarity=0.369  Sum_probs=44.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCC------------CCeee---eChhHHHHHHhhcchHHH
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTH------------PQAHF---INNRYALVFRKLDGLAEE  104 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~~~~------------~~a~~---l~~rt~e~l~~l~Gl~~~  104 (572)
                      +|+|||||++||++|..|++.|  ++|+|+|+++.+.-+            -.++.   -.+..+++++++ |+.+.
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-gl~~~   77 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKEL-GLEDE   77 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHc-CCccc
Confidence            6999999999999999999988  899999998764210            01111   134567888888 77654

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.75  E-value=3.1e-07  Score=102.12  Aligned_cols=39  Identities=26%  Similarity=0.379  Sum_probs=35.1

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +...++||||||||+|||++|+.+++.|.+|+|+||...
T Consensus         8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~   46 (598)
T PRK09078          8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP   46 (598)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            344678999999999999999999999999999999764

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.74  E-value=1.5e-07  Score=97.26  Aligned_cols=144  Identities=17%  Similarity=0.286  Sum_probs=82.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCCCeeeeChh----HHHHHHhhcchHHHHH-hcCCCcccccce
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVL-EKNKAFSTHPQAHFINNR----YALVFRKLDGLAEEIE-RSQPPVDLWRKF  118 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~vi-Er~~~~~~~~~a~~l~~r----t~e~l~~l~Gl~~~l~-~~~~~~~~~~~~  118 (572)
                      ||+|||||.||+.||++++|.|.+|+|+ ++.......++...+...    ..+.++.++|+.-.+. ..+.      .+
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i------~~   74 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGI------HF   74 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEE------EE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhh------hh
Confidence            7999999999999999999999999999 444445444444333211    1233444433222211 1111      01


Q ss_pred             eeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEE
Q 008258          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (572)
Q Consensus       119 ~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~  198 (572)
                      ...+...|...                -.....++|..+.+.+.+.+++.+                  +.++. ..+|+
T Consensus        75 ~~lN~skGpav----------------~a~r~qvDr~~y~~~~~~~l~~~~------------------nl~i~-~~~V~  119 (392)
T PF01134_consen   75 RMLNRSKGPAV----------------HALRAQVDRDKYSRAMREKLESHP------------------NLTII-QGEVT  119 (392)
T ss_dssp             EEESTTS-GGC----------------TEEEEEE-HHHHHHHHHHHHHTST------------------TEEEE-ES-EE
T ss_pred             hcccccCCCCc----------------cchHhhccHHHHHHHHHHHHhcCC------------------CeEEE-Ecccc
Confidence            11111111110                111246789999999999887753                  34664 57899


Q ss_pred             EEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCC
Q 008258          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (572)
Q Consensus       199 ~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~  235 (572)
                      ++..+++.|.-...  .+|.    .+.+|.||.|+|.
T Consensus       120 ~l~~e~~~v~GV~~--~~g~----~~~a~~vVlaTGt  150 (392)
T PF01134_consen  120 DLIVENGKVKGVVT--KDGE----EIEADAVVLATGT  150 (392)
T ss_dssp             EEEECTTEEEEEEE--TTSE----EEEECEEEE-TTT
T ss_pred             eEEecCCeEEEEEe--CCCC----EEecCEEEEeccc
Confidence            99887777665443  2453    7899999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.74  E-value=5.3e-06  Score=89.79  Aligned_cols=61  Identities=20%  Similarity=0.311  Sum_probs=46.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCCC-------CC-----Ceeee---ChhHHHHHHhhcchHHH
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFST-------HP-----QAHFI---NNRYALVFRKLDGLAEE  104 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~~~-------~~-----~a~~l---~~rt~e~l~~l~Gl~~~  104 (572)
                      .||+|||||++||++|..|+++    |++|+|+|+++.+.-       .+     .++.+   .++.+++++++ |+.+.
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~l-gl~~~   81 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDL-GLEHV   81 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHc-CCCcc
Confidence            5899999999999999999999    999999999876421       01     12222   24578888888 87654


Q ss_pred             H
Q 008258          105 I  105 (572)
Q Consensus       105 l  105 (572)
                      +
T Consensus        82 ~   82 (462)
T TIGR00562        82 L   82 (462)
T ss_pred             c
Confidence            4

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.74  E-value=5.8e-08  Score=102.60  Aligned_cols=147  Identities=18%  Similarity=0.211  Sum_probs=89.5

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      ...+|+|||||||||++|..|.+.|++++++||...+.   .-....+..-+...   -+.+.++..- |.+.+      
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG---GlW~y~~~~~~~~s---s~Y~~l~tn~-pKe~~------   71 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG---GLWKYTENVEVVHS---SVYKSLRTNL-PKEMM------   71 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc---ceEeecCccccccc---chhhhhhccC-Chhhh------
Confidence            34699999999999999999999999999999998762   11111110000000   0111111111 10000      


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                              .-.+...+.+       .+...-+...+.+.|...+++.+.                 ...|+|+++++.++
T Consensus        72 --------~~~dfpf~~~-------~~~~~p~~~e~~~YL~~yA~~F~l-----------------~~~i~f~~~v~~v~  119 (448)
T KOG1399|consen   72 --------GYSDFPFPER-------DPRYFPSHREVLEYLRDYAKHFDL-----------------LKMINFNTEVVRVD  119 (448)
T ss_pred             --------cCCCCCCccc-------CcccCCCHHHHHHHHHHHHHhcCh-----------------hhheEecccEEEEe
Confidence                    0000000000       011122344788899999988875                 23799999999999


Q ss_pred             eeC-CeEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258          202 ATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (572)
Q Consensus       202 ~~~-~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~  236 (572)
                      ..+ +.+.|+...  +++ .....-+|.||.|.|-+
T Consensus       120 ~~~~gkW~V~~~~--~~~-~~~~~ifd~VvVctGh~  152 (448)
T KOG1399|consen  120 SIDKGKWRVTTKD--NGT-QIEEEIFDAVVVCTGHY  152 (448)
T ss_pred             eccCCceeEEEec--CCc-ceeEEEeeEEEEcccCc
Confidence            988 688888872  222 23456799999999988

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.74  E-value=1.4e-07  Score=101.86  Aligned_cols=37  Identities=30%  Similarity=0.458  Sum_probs=33.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~   77 (572)
                      ..++||+|||||++|+++|+.|++.  |.+|+|+|+...
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            4458999999999999999999998  999999999753

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.74  E-value=2.6e-07  Score=102.35  Aligned_cols=38  Identities=24%  Similarity=0.352  Sum_probs=33.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      +.++||||||||.|||++|+.+++.  |.+|+|+||....
T Consensus         2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~   41 (582)
T PRK09231          2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM   41 (582)
T ss_pred             ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            4568999999999999999999987  5899999998643

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.73  E-value=3.6e-07  Score=101.74  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=34.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      +.++||||||||+|||++|+.+++.  |.+|+||||.+..
T Consensus         9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~   48 (608)
T PRK06854          9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK   48 (608)
T ss_pred             eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence            3468999999999999999999998  9999999998653

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.73  E-value=3.8e-07  Score=101.63  Aligned_cols=38  Identities=29%  Similarity=0.408  Sum_probs=34.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||||||||.|||++|+.+++.|.+|+|+||.+..
T Consensus        27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~   64 (617)
T PTZ00139         27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT   64 (617)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence            35689999999999999999999999999999998653

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.72  E-value=2.9e-06  Score=83.81  Aligned_cols=48  Identities=33%  Similarity=0.316  Sum_probs=42.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFIN   88 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~   88 (572)
                      ....||+|||||+-||++|+.|+|+|.+++++|+.+-+...+.+|..|
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~s   52 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGIS   52 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcc
Confidence            456899999999999999999999999999999999887777777665

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.70  E-value=5.7e-07  Score=99.84  Aligned_cols=39  Identities=33%  Similarity=0.445  Sum_probs=35.1

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      |.+.++||||||||+|||++|+.+++.|.+|+||||...
T Consensus         8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~   46 (591)
T PRK07057          8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP   46 (591)
T ss_pred             cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            345678999999999999999999999999999999753

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.70  E-value=4.2e-07  Score=97.21  Aligned_cols=36  Identities=33%  Similarity=0.404  Sum_probs=32.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||||||+|.|||++|+.++ .|.+|+||||.+..
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~   38 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN   38 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence            5689999999999999999985 69999999998754

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.70  E-value=1.3e-07  Score=103.00  Aligned_cols=143  Identities=21%  Similarity=0.264  Sum_probs=84.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCC-cccccceeeeeC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP-VDLWRKFIYCTS  123 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~-~~~~~~~~~~~~  123 (572)
                      +|+||||||+||++|-.|.+.|++++++||.+..                    +|+|..-...... ...+.....   
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i--------------------GG~W~~~~~~~~g~~~~y~sl~~---   59 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI--------------------GGLWRYTENPEDGRSSVYDSLHT---   59 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS--------------------SGGGCHSTTCCCSEGGGSTT-B----
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC--------------------CccCeeCCcCCCCccccccceEE---
Confidence            6999999999999999999999999999999876                    2554211000000 000110000   


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                      ...+......     ++..  .+......++..+.+.|.+.++..+.                 ...|+|+++|++++..
T Consensus        60 n~sk~~~~fs-----dfp~--p~~~p~f~~~~~v~~Yl~~Ya~~f~L-----------------~~~I~fnt~V~~v~~~  115 (531)
T PF00743_consen   60 NTSKEMMAFS-----DFPF--PEDYPDFPSHSEVLEYLESYAEHFGL-----------------RKHIRFNTEVVSVERD  115 (531)
T ss_dssp             SS-GGGSCCT-----TS-H--CCCCSSSEBHHHHHHHHHHHHHHTTG-----------------GGGEETSEEEEEEEEE
T ss_pred             eeCchHhcCC-----CcCC--CCCCCCCCCHHHHHHHHHHHHhhhCC-----------------cceEEEccEEeEeeec
Confidence            0011111111     1110  00011234677899999999998875                 1379999999999876


Q ss_pred             CC-----eEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          204 DQ-----CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       204 ~~-----~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      ++     .++|+..  ++|  .+++-.+|.||.|.|.++.
T Consensus       116 ~d~~~~~~W~V~~~--~~g--~~~~~~fD~VvvatG~~~~  151 (531)
T PF00743_consen  116 PDFSATGKWEVTTE--NDG--KEETEEFDAVVVATGHFSK  151 (531)
T ss_dssp             TTTT-ETEEEEEET--TTT--EEEEEEECEEEEEE-SSSC
T ss_pred             cccCCCceEEEEee--cCC--eEEEEEeCeEEEcCCCcCC
Confidence            53     5666653  344  3345678999999999874

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.69  E-value=4.2e-07  Score=100.85  Aligned_cols=34  Identities=35%  Similarity=0.488  Sum_probs=31.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ||||||||+|||++|+.+++.|.+|+||||.+..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~   34 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT   34 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            8999999999999999999999999999998643

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.69  E-value=1.3e-07  Score=103.58  Aligned_cols=114  Identities=18%  Similarity=0.334  Sum_probs=77.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ...+||+||||||+|+++|+.|++.|++|+|||....      +...        ... ++              ..+  
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~G------G~~~--------~~~-~~--------------~~~--  258 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIG------GQVK--------DTV-GI--------------ENL--  258 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------Cccc--------cCc-Cc--------------ccc--
Confidence            4468999999999999999999999999999974311      1000        000 10              000  


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                          .+                  .+    .....++.+.|.+.+.+.|+                   +++.+++++++
T Consensus       259 ----~~------------------~~----~~~~~~l~~~l~~~l~~~gv-------------------~i~~~~~V~~I  293 (515)
T TIGR03140       259 ----IS------------------VP----YTTGSQLAANLEEHIKQYPI-------------------DLMENQRAKKI  293 (515)
T ss_pred             ----cc------------------cC----CCCHHHHHHHHHHHHHHhCC-------------------eEEcCCEEEEE
Confidence                00                  00    01234566677777777776                   88889999999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +.+++.+.+++.   +|.    ++++|.||.|.|++.
T Consensus       294 ~~~~~~~~v~~~---~g~----~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       294 ETEDGLIVVTLE---SGE----VLKAKSVIVATGARW  323 (515)
T ss_pred             EecCCeEEEEEC---CCC----EEEeCEEEECCCCCc
Confidence            877777766654   443    689999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=7.5e-07  Score=98.49  Aligned_cols=38  Identities=21%  Similarity=0.370  Sum_probs=34.7

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+.++||||||+|.|||++|+.+++.|.+|+|+||.+.
T Consensus         2 ~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~   39 (566)
T PRK06452          2 EKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP   39 (566)
T ss_pred             CcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence            34678999999999999999999999999999999864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.68  E-value=7.9e-07  Score=99.17  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=34.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||||||+|.|||++|+.+++.|.+|+|+||....
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~   85 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT   85 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence            4689999999999999999999999999999998654

>PLN02612 phytoene desaturase

Probab=98.68  E-value=1.8e-05  Score=87.46  Aligned_cols=63  Identities=25%  Similarity=0.388  Sum_probs=48.5

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-------------CCeee---eChhHHHHHHhhcchHHHH
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-------------PQAHF---INNRYALVFRKLDGLAEEI  105 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~-------------~~a~~---l~~rt~e~l~~l~Gl~~~l  105 (572)
                      ...+|+|||||++||++|..|+++|++|+|+|++..+.-.             .+.+.   ..++.+++|+++ |+.+.+
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~el-G~~~~~  170 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGEL-GINDRL  170 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHh-CCcccc
Confidence            3578999999999999999999999999999998643211             01122   236788999999 886654

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.67  E-value=8.2e-07  Score=99.32  Aligned_cols=38  Identities=24%  Similarity=0.339  Sum_probs=34.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||||||||.|||++|+.+++.|.+|+|+||...+
T Consensus        33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~   70 (640)
T PRK07573         33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP   70 (640)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            35689999999999999999999999999999986543

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.66  E-value=3.8e-07  Score=100.65  Aligned_cols=41  Identities=24%  Similarity=0.450  Sum_probs=36.9

Q ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .|.+.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus         2 ~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~   42 (557)
T PRK07843          2 AMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY   42 (557)
T ss_pred             CCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            34566899999999999999999999999999999998754

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.66  E-value=6.4e-07  Score=99.09  Aligned_cols=37  Identities=22%  Similarity=0.359  Sum_probs=33.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      .++||||||||+|||++|+.+++.  |.+|+|+||....
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~   40 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM   40 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence            358999999999999999999987  6899999998654

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.66  E-value=1.5e-07  Score=101.09  Aligned_cols=34  Identities=32%  Similarity=0.483  Sum_probs=32.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~   78 (572)
                      ||||||||++|+++|+.++++| .+|+||||.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence            8999999999999999999999 999999998764

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PLN02268 probable polyamine oxidase

Probab=98.66  E-value=1.1e-05  Score=86.67  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+|+|||||++||++|..|.+.|++|+|+|+++.+
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~   35 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRI   35 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            37999999999999999999999999999998754

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.65  E-value=6.2e-07  Score=99.51  Aligned_cols=40  Identities=23%  Similarity=0.362  Sum_probs=35.9

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAF   78 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~G---i~v~viEr~~~~   78 (572)
                      |...++||||||||+|||++|+.+++.|   .+|+|+||.+..
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~   43 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM   43 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence            4466789999999999999999999998   899999998754

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=2.6e-07  Score=93.36  Aligned_cols=34  Identities=35%  Similarity=0.701  Sum_probs=30.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~   75 (572)
                      ..+||+|||||||||++|++++++|.+ ++|+|+.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~   36 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG   36 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC
Confidence            458999999999999999999999999 6666664

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.62  E-value=2.9e-07  Score=96.37  Aligned_cols=34  Identities=29%  Similarity=0.557  Sum_probs=32.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +||+|||||++|+++|+.|++.|.+|+|+||...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999864

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.62  E-value=4.9e-07  Score=96.51  Aligned_cols=64  Identities=16%  Similarity=0.139  Sum_probs=46.3

Q ss_pred             hhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEe-ccCCceeeEEEEecEEEee
Q 008258          154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASF-LKEGKCTERNIQCNILIGT  232 (572)
Q Consensus       154 q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~-~~~g~~~~~~i~ad~vVgA  232 (572)
                      -..+...|.+.+++.|+                   +|+++++++++..+++.|+-.... ..+|  ..++++|+-||-|
T Consensus       140 g~~~~~~l~~~~~~~gv-------------------~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g--~~~~i~A~aVIlA  198 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGV-------------------DIRFNTRVTDLITEDGRVTGVVAENPADG--EFVRIKAKAVILA  198 (417)
T ss_dssp             HHHHHHHHHHHHHHTTE-------------------EEEESEEEEEEEEETTEEEEEEEEETTTC--EEEEEEESEEEE-
T ss_pred             HHHHHHHHHHHHhhcCe-------------------eeeccceeeeEEEeCCceeEEEEEECCCC--eEEEEeeeEEEec
Confidence            35677889999999887                   999999999999887766544432 2334  5668999999999


Q ss_pred             cCCChh
Q 008258          233 DGAGST  238 (572)
Q Consensus       233 DG~~S~  238 (572)
                      .|..+.
T Consensus       199 tGG~~~  204 (417)
T PF00890_consen  199 TGGFGG  204 (417)
T ss_dssp             ---BGG
T ss_pred             cCcccc
Confidence            999885

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN02676 polyamine oxidase

Probab=98.62  E-value=7.5e-06  Score=88.86  Aligned_cols=37  Identities=32%  Similarity=0.485  Sum_probs=33.6

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~   78 (572)
                      ..+||+|||||++||++|..|++.|+ +|+|+|++..+
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~   62 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI   62 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence            35799999999999999999999998 69999998754

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.61  E-value=1.8e-07  Score=89.49  Aligned_cols=53  Identities=30%  Similarity=0.489  Sum_probs=41.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------------CCCeeeeChhHHHHHHh
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------------HPQAHFINNRYALVFRK   97 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~------------~~~a~~l~~rt~e~l~~   97 (572)
                      +|+|||+||+||++|..|+..|++|+|+||.....-            .-.+-++.++.-.+++.
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~   67 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRA   67 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHH
Confidence            699999999999999999999999999999876421            11345666666555443

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.61  E-value=8.6e-07  Score=98.29  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=32.5

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~   77 (572)
                      .++||||||||+|||++|+.+++.  |.+|+|+||.+.
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence            458999999999999999999987  489999999864

>PRK08275 putative oxidoreductase; Provisional

Probab=98.61  E-value=1.1e-06  Score=97.22  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=34.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      ..++||||||||+|||++|+.+++.  |.+|+|+||.+..
T Consensus         7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            3568999999999999999999987  7899999998753

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.61  E-value=1e-06  Score=98.39  Aligned_cols=39  Identities=26%  Similarity=0.347  Sum_probs=35.2

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+.++||||||||+|||++|+.+++.|.+|+||||.+..
T Consensus         5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~   43 (626)
T PRK07803          5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG   43 (626)
T ss_pred             cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            345689999999999999999999999999999998643

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.60  E-value=1.5e-06  Score=96.52  Aligned_cols=37  Identities=30%  Similarity=0.327  Sum_probs=33.0

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +..++||||||||+|||++|+.+++. .+|+|+||.+.
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~   38 (583)
T PRK08205          2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP   38 (583)
T ss_pred             cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence            34578999999999999999999986 99999999864

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.59  E-value=3e-07  Score=95.86  Aligned_cols=101  Identities=19%  Similarity=0.188  Sum_probs=66.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--------CCeeeeChhHHHHHHhhcchHH-HHHhcCCCccc
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------PQAHFINNRYALVFRKLDGLAE-EIERSQPPVDL  114 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~--------~~a~~l~~rt~e~l~~l~Gl~~-~l~~~~~~~~~  114 (572)
                      .||+|||||++|+.+|+.|+++|++|+|+|+++.....        .+....+.++..++... |+++ +++..+...  
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~-Gll~~em~~lgsl~--   79 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAV-GLLKEEMRRLGSLI--   79 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcC-CchHHHHHHhcchh--
Confidence            48999999999999999999999999999988765321        12334556666777777 7665 444332110  


Q ss_pred             ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc
Q 008258          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL  168 (572)
Q Consensus       115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~  168 (572)
                           ..   .....         .    ..+.....++|..+.+.|.+.+++.
T Consensus        80 -----~~---aad~~---------~----vPA~gaLvvdR~~~~~~L~~~L~~~  112 (436)
T PRK05335         80 -----ME---AADAH---------R----VPAGGALAVDREGFSEYVTEALENH  112 (436)
T ss_pred             -----ee---ccccc---------C----CCCccceecCHHHHHHHHHHHHHcC
Confidence                 00   00000         0    1122234678888999999998765

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.59  E-value=1.2e-06  Score=96.22  Aligned_cols=38  Identities=34%  Similarity=0.493  Sum_probs=33.6

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +..++||||||+|+|||++|+.+++. .+|+|+||.+..
T Consensus         5 ~~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~   42 (536)
T PRK09077          5 PEHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS   42 (536)
T ss_pred             ccccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence            35568999999999999999999986 899999998653

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.58  E-value=4.3e-07  Score=100.29  Aligned_cols=34  Identities=26%  Similarity=0.598  Sum_probs=32.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ..+||+|||||||||++|+.|+++|++|+|||+.
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~   36 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD   36 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence            3489999999999999999999999999999985

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.58  E-value=6.2e-06  Score=86.92  Aligned_cols=38  Identities=34%  Similarity=0.484  Sum_probs=34.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||+|||||++|+++|+.|++.|.+|+|+|+....
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~   39 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG   39 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence            34689999999999999999999999999999998754

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.57  E-value=2.1e-06  Score=95.30  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=34.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++||||||+|.|||++|+.+++.|.+|+|+||....
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~   42 (588)
T PRK08958          5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT   42 (588)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            45689999999999999999999999999999998543

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.57  E-value=1.9e-06  Score=96.56  Aligned_cols=40  Identities=28%  Similarity=0.336  Sum_probs=36.3

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      |.+.++||||||||.|||++|+.+++.|.+|+||||.+..
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~   40 (657)
T PRK08626          1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK   40 (657)
T ss_pred             CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            4467899999999999999999999999999999998654

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.53  E-value=2.7e-06  Score=93.83  Aligned_cols=36  Identities=25%  Similarity=0.346  Sum_probs=32.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +.++||||||||.|||++|+.+ +.|.+|+|+||.+.
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~   40 (543)
T PRK06263          5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF   40 (543)
T ss_pred             eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence            4568999999999999999999 89999999999753

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.53  E-value=1.6e-06  Score=94.23  Aligned_cols=146  Identities=18%  Similarity=0.213  Sum_probs=82.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCC---eeeeChh-HHHHHHhhcchHHHHHh-cCCCcccccc
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQ---AHFINNR-YALVFRKLDGLAEEIER-SQPPVDLWRK  117 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~-~~~~---a~~l~~r-t~e~l~~l~Gl~~~l~~-~~~~~~~~~~  117 (572)
                      +||+|||||++|+.+|..+++.|.+|+|+|+..... ..++   -.++... -.+-++.++|+...+.. ....   |+ 
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~---~r-   76 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQ---FR-   76 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhcee---he-
Confidence            599999999999999999999999999999975321 1111   1111111 12333444333222211 1111   10 


Q ss_pred             eeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258          118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (572)
Q Consensus       118 ~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v  197 (572)
                        ......|...              ..+  ...+++..+...|.+.+++.+.                  +.++. .++
T Consensus        77 --~ln~skgpAV--------------~~~--RaQVDr~~y~~~L~e~Le~~pg------------------V~Ile-~~V  119 (617)
T TIGR00136        77 --VLNSSKGPAV--------------RAT--RAQIDKVLYRKAMRNALENQPN------------------LSLFQ-GEV  119 (617)
T ss_pred             --ecccCCCCcc--------------ccc--HHhCCHHHHHHHHHHHHHcCCC------------------cEEEE-eEE
Confidence              0000001100              011  1467777888888888877632                  25543 466


Q ss_pred             EEEeee-CCeE-EEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          198 VSVSAT-DQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       198 ~~v~~~-~~~v-~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +++..+ ++.+ .|.+.   +|.    .++|+.||.|.|..+
T Consensus       120 v~li~e~~g~V~GV~t~---~G~----~I~Ad~VILATGtfL  154 (617)
T TIGR00136       120 EDLILEDNDEIKGVVTQ---DGL----KFRAKAVIITTGTFL  154 (617)
T ss_pred             EEEEEecCCcEEEEEEC---CCC----EEECCEEEEccCccc
Confidence            776544 3333 23332   453    689999999999985

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.53  E-value=1.8e-06  Score=93.26  Aligned_cols=34  Identities=32%  Similarity=0.481  Sum_probs=32.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .||+|||||+|||++|+.+++.|.+|+|+||.+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5999999999999999999999999999999854

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.51  E-value=2.2e-06  Score=93.65  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ++||||||+|.|||++|+.+++ |.+|+|+||.+..
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~   37 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR   37 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence            5799999999999999999987 9999999998754

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.51  E-value=3.8e-06  Score=93.29  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=33.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ++||||||+|+|||++|+.+++.|.+|+||||.+..
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~   38 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK   38 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence            469999999999999999999999999999998653

>PLN02815 L-aspartate oxidase

Probab=98.49  E-value=4.1e-06  Score=92.71  Aligned_cols=38  Identities=18%  Similarity=0.479  Sum_probs=34.3

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+.++||||||+|.|||++|+.+++.| +|+|+||.+..
T Consensus        26 ~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~   63 (594)
T PLN02815         26 STKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH   63 (594)
T ss_pred             cccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence            356789999999999999999999999 99999998754

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.48  E-value=2e-06  Score=68.93  Aligned_cols=34  Identities=26%  Similarity=0.617  Sum_probs=31.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|+|||||++|+-+|..|++.|.+|+|+++.+.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            4899999999999999999999999999998775

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.48  E-value=5.6e-05  Score=85.43  Aligned_cols=38  Identities=37%  Similarity=0.451  Sum_probs=34.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ....+|+|||||++||++|+.|++.|++|+|+|++..+
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~  273 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP  273 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence            34578999999999999999999999999999998654

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.46  E-value=1.6e-06  Score=96.21  Aligned_cols=39  Identities=31%  Similarity=0.540  Sum_probs=35.3

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+.++||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus         9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~   47 (581)
T PRK06134          9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF   47 (581)
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            455789999999999999999999999999999997643

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.43  E-value=1e-06  Score=96.47  Aligned_cols=36  Identities=25%  Similarity=0.463  Sum_probs=33.3

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||||||+| +||++|+.+++.|.+|+||||.+..
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~   41 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF   41 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            46899999999 9999999999999999999998753

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.41  E-value=3.7e-06  Score=91.91  Aligned_cols=38  Identities=24%  Similarity=0.202  Sum_probs=33.5

Q ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.+.++||||||+|.|||++|+.++  |.+|+|+||.+.
T Consensus         4 ~~~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~   41 (513)
T PRK07512          4 DLRILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL   41 (513)
T ss_pred             cccCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence            35567899999999999999999997  569999999875

>PLN02568 polyamine oxidase

Probab=98.41  E-value=3.1e-06  Score=92.61  Aligned_cols=39  Identities=23%  Similarity=0.306  Sum_probs=34.8

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCC-----CCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~G-----i~v~viEr~~~~   78 (572)
                      ++...||+|||||++||++|..|++.|     ++|+|+|++..+
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~   45 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI   45 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence            445679999999999999999999887     899999998765

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.40  E-value=6.7e-05  Score=74.23  Aligned_cols=38  Identities=24%  Similarity=0.490  Sum_probs=33.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFS   79 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~~   79 (572)
                      .++||+|||||..|++.|.+|+++    |++|+|+||+...+
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt  126 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT  126 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence            468999999999999999999865    79999999998764

>PRK10262 thioredoxin reductase; Provisional

Probab=98.39  E-value=5e-06  Score=85.46  Aligned_cols=35  Identities=17%  Similarity=0.399  Sum_probs=32.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      +...||+||||||+||++|..|+++|.++++||+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~   38 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   38 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence            55689999999999999999999999999999954

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.38  E-value=2.4e-06  Score=94.81  Aligned_cols=38  Identities=42%  Similarity=0.659  Sum_probs=35.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||||||+|++||++|+.++++|.+|+|+||.+..
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~   44 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF   44 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            45789999999999999999999999999999998754

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.37  E-value=3.7e-07  Score=70.63  Aligned_cols=31  Identities=42%  Similarity=0.684  Sum_probs=28.9

Q ss_pred             EECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           48 IVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        48 IVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      |||||++||++|..|++.|++|+|+||++.+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence            8999999999999999999999999999876

...

>PRK09897 hypothetical protein; Provisional

Probab=98.37  E-value=1.6e-06  Score=94.16  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~   78 (572)
                      .+|+||||||+|+++|..|.+.+  ++|+|||+...+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            37999999999999999998864  689999997654

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.35  E-value=3.2e-06  Score=93.29  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=34.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~   41 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV   41 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4689999999999999999999999999999998653

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.35  E-value=1.1e-05  Score=83.90  Aligned_cols=74  Identities=23%  Similarity=0.372  Sum_probs=56.3

Q ss_pred             cChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEEEEeeeCCe-EEEEEEeccCCceeeEEEEecEE
Q 008258          152 FSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNIL  229 (572)
Q Consensus       152 l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~v  229 (572)
                      ++=..|.+.|.+.+.+. |+                   +++++++|+++++.+++ +.|++.+..+|  ...+++|++|
T Consensus       178 VnFG~LTr~l~~~l~~~~~~-------------------~~~~~~eV~~i~r~~dg~W~v~~~~~~~~--~~~~v~a~FV  236 (488)
T PF06039_consen  178 VNFGALTRQLVEYLQKQKGF-------------------ELHLNHEVTDIKRNGDGRWEVKVKDLKTG--EKREVRAKFV  236 (488)
T ss_pred             ccHHHHHHHHHHHHHhCCCc-------------------EEEecCEeCeeEECCCCCEEEEEEecCCC--CeEEEECCEE
Confidence            44456777788887765 44                   99999999999998877 88988755444  4568999999


Q ss_pred             EeecCCChh-hhhhcCCc
Q 008258          230 IGTDGAGST-VRKLVGID  246 (572)
Q Consensus       230 VgADG~~S~-VR~~lg~~  246 (572)
                      +..-|.+|. +-+..|++
T Consensus       237 fvGAGG~aL~LLqksgi~  254 (488)
T PF06039_consen  237 FVGAGGGALPLLQKSGIP  254 (488)
T ss_pred             EECCchHhHHHHHHcCCh
Confidence            888888775 45666764

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.35  E-value=4e-06  Score=86.61  Aligned_cols=38  Identities=34%  Similarity=0.490  Sum_probs=34.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...+||+|||||.+||++|..|.|.|++|+|+|.+...
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~   42 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV   42 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence            44589999999999999999999999999999988765

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.35  E-value=6.5e-06  Score=90.61  Aligned_cols=37  Identities=24%  Similarity=0.469  Sum_probs=33.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||||||+|.|||++|+.+++ |.+|+||||.+..
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~   43 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLK   43 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCC
Confidence            567899999999999999999975 9999999998653

>PRK06370 mercuric reductase; Validated

Probab=98.32  E-value=8.3e-06  Score=88.28  Aligned_cols=36  Identities=25%  Similarity=0.476  Sum_probs=33.4

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ++.++||+||||||+|+++|+.|+++|.+|+||||.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   37 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG   37 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            355699999999999999999999999999999986

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.31  E-value=1.3e-05  Score=89.34  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=30.4

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        46 VlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      |||||+|+|||++|+.+++.|.+|+|+||.+.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~   32 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA   32 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            79999999999999999999999999999873

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.31  E-value=1.1e-05  Score=87.23  Aligned_cols=40  Identities=23%  Similarity=0.439  Sum_probs=35.5

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      |.+.++||+||||||+|+++|+.|+++|.+|+||||.+.+
T Consensus         1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~   40 (461)
T PRK05249          1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV   40 (461)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence            3456799999999999999999999999999999997543

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.31  E-value=1.7e-05  Score=83.71  Aligned_cols=62  Identities=21%  Similarity=0.432  Sum_probs=49.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCC--------------CCCeeeeC-hhHHHHHHhhcchHHHHHh
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFST--------------HPQAHFIN-NRYALVFRKLDGLAEEIER  107 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~~~--------------~~~a~~l~-~rt~e~l~~l~Gl~~~l~~  107 (572)
                      .|+|||||++||++|+.|+|++  ++++|+|+.+...-              .+...... +..++.++++ |+.+.+..
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eL-Gled~l~~   80 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKEL-GLEDKLLW   80 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHh-CcHHhhcc
Confidence            5999999999999999999999  99999999865421              12223333 6678889999 99999873

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.31  E-value=1.1e-06  Score=83.47  Aligned_cols=33  Identities=36%  Similarity=0.686  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ||+||||||+|+++|..|++.|++++|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            699999999999999999999999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.29  E-value=1.1e-05  Score=87.56  Aligned_cols=35  Identities=34%  Similarity=0.605  Sum_probs=32.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ...+||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            35699999999999999999999999999999985

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.28  E-value=1.4e-05  Score=86.68  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=33.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +.++||+||||||+|+++|..|++.|.+|+|||+.+
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   37 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS   37 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            446999999999999999999999999999999865

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.26  E-value=1.1e-05  Score=86.72  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=31.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ++||+||||||+|+++|+.++++|.+|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            589999999999999999999999999999984

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.25  E-value=2e-05  Score=85.49  Aligned_cols=35  Identities=14%  Similarity=0.442  Sum_probs=33.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ..++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~   38 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG   38 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence            56799999999999999999999999999999986

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.25  E-value=3e-05  Score=85.69  Aligned_cols=37  Identities=30%  Similarity=0.478  Sum_probs=34.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +.++||||||+|.+||++|+.+++.|.+|+||||.+.
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~   38 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENE   38 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3578999999999999999999999999999999883

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.25  E-value=1.7e-05  Score=85.88  Aligned_cols=35  Identities=40%  Similarity=0.690  Sum_probs=32.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .++||+||||||+|+++|..|+++|.+|+|+||.+
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            45899999999999999999999999999999865

>PLN02507 glutathione reductase

Probab=98.24  E-value=1.2e-05  Score=87.58  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=32.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ..++||+||||||+|+++|..++++|.+|+|||+.
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~   57 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP   57 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            45689999999999999999999999999999973

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.24  E-value=4.2e-05  Score=84.92  Aligned_cols=38  Identities=24%  Similarity=0.529  Sum_probs=34.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus        14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~   51 (578)
T PRK12843         14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV   51 (578)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            44689999999999999999999999999999997643

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.23  E-value=1.3e-05  Score=86.35  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=31.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ++||+||||||+|+++|+.|++.|.+|+|+||.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~   34 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK   34 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence            589999999999999999999999999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PLN03000 amine oxidase

Probab=98.21  E-value=0.00047  Score=78.26  Aligned_cols=37  Identities=41%  Similarity=0.539  Sum_probs=34.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...+|+|||||++||++|..|++.|++|+|+|++..+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri  219 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP  219 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence            3579999999999999999999999999999998754

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.21  E-value=1.8e-05  Score=84.56  Aligned_cols=190  Identities=18%  Similarity=0.225  Sum_probs=101.0

Q ss_pred             ccCccccCCCCCC---CCCCcccccCCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCCCeee--
Q 008258           16 IKTFPYPYGYTQC---RALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHF--   86 (572)
Q Consensus        16 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~----~~~~a~~--   86 (572)
                      .+..++.+.+.+.   ..+|+...   -....||+|||||.+|..+|+.|+|.|.+..+++.+....    .++.+..  
T Consensus        12 ~~~~~~~v~~~qg~~~~~~s~s~~---~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~   88 (856)
T KOG2844|consen   12 EKGVPYQVKERQGTSVVARSPSTP---LPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQ   88 (856)
T ss_pred             CCCCchhhcccCcccccccCcccc---CCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceee
Confidence            4446666766555   44555553   3445899999999999999999999999955554444332    2222211  


Q ss_pred             --eChhHHHHHHh--hcchHHHHHh-cCCCcccccce--eee-eCC-----------CCCeee----eec---------C
Q 008258           87 --INNRYALVFRK--LDGLAEEIER-SQPPVDLWRKF--IYC-TSV-----------TGPILG----SVD---------H  134 (572)
Q Consensus        87 --l~~rt~e~l~~--l~Gl~~~l~~-~~~~~~~~~~~--~~~-~~~-----------~G~~~~----~~~---------~  134 (572)
                        .++-.++.+..  . -+..++++ .+.+. .|...  .+. .+.           .|...+    -++         .
T Consensus        89 lr~~dv~~qlia~~~~-~l~~~leeEtgl~t-Gwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pL  166 (856)
T KOG2844|consen   89 LFPSDVELQLIAHTSR-VLYRELEEETGLHT-GWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPL  166 (856)
T ss_pred             ccCCchhHHHHHHHHH-HHHHHHHHhcCCCc-ceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcc
Confidence              12222333321  1 23323333 22221 22110  000 000           000000    000         0


Q ss_pred             CCcccc-ccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCe-EEEEEE
Q 008258          135 MQPQDF-EKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIAS  212 (572)
Q Consensus       135 ~~~~~~-~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~-v~v~~~  212 (572)
                      +..+++ ..+.+|.. ..++-..+.+.|...+.+.|+                   .|..++.|+++....++ +-|...
T Consensus       167 Ln~d~v~g~Ly~P~D-G~~DP~~lC~ala~~A~~~GA-------------------~viE~cpV~~i~~~~~~~~gVeT~  226 (856)
T KOG2844|consen  167 LNVDDVYGGLYSPGD-GVMDPAGLCQALARAASALGA-------------------LVIENCPVTGLHVETDKFGGVETP  226 (856)
T ss_pred             cchhHheeeeecCCC-cccCHHHHHHHHHHHHHhcCc-------------------EEEecCCcceEEeecCCccceecc
Confidence            000111 11123332 356667889999999999998                   77777788777644333 223322


Q ss_pred             eccCCceeeEEEEecEEEeecCCChh
Q 008258          213 FLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       213 ~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                         -|     .|++.++|.|.|....
T Consensus       227 ---~G-----~iet~~~VNaaGvWAr  244 (856)
T KOG2844|consen  227 ---HG-----SIETECVVNAAGVWAR  244 (856)
T ss_pred             ---Cc-----ceecceEEechhHHHH
Confidence               34     5899999999998763

>PRK12839 hypothetical protein; Provisional

Probab=98.21  E-value=5.8e-05  Score=83.54  Aligned_cols=40  Identities=30%  Similarity=0.361  Sum_probs=36.0

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +++.++||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus         4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~   43 (572)
T PRK12839          4 SMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC   43 (572)
T ss_pred             CcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            3466799999999999999999999999999999998653

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.20  E-value=4e-05  Score=85.03  Aligned_cols=38  Identities=32%  Similarity=0.525  Sum_probs=34.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++||||||+|++||++|+.+++.|.+|+||||.+..
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~   46 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF   46 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            45689999999999999999999999999999998754

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.20  E-value=2.4e-05  Score=84.91  Aligned_cols=33  Identities=36%  Similarity=0.658  Sum_probs=31.7

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      .++||+||||||+|+++|+.+++.|.+|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            468999999999999999999999999999998

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.19  E-value=2e-05  Score=86.95  Aligned_cols=37  Identities=27%  Similarity=0.589  Sum_probs=33.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++||||||+| +|+++|+..++.|.+|+||||.+..
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~   50 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV   50 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence            457999999999 8999999999999999999998654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.18  E-value=1.7e-05  Score=85.89  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=32.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ++||+||||||+|+++|+.++++|.+|+|||++.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~   36 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS   36 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            4899999999999999999999999999999754

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.14  E-value=1.5e-05  Score=85.48  Aligned_cols=30  Identities=27%  Similarity=0.454  Sum_probs=28.6

Q ss_pred             EECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           48 IVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        48 IVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      |||+|.+||++|+.+++.|.+|+||||.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            799999999999999999999999999874

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.13  E-value=1e-06  Score=90.98  Aligned_cols=149  Identities=21%  Similarity=0.327  Sum_probs=76.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCCeeeeChhHH--HHHHhhcchHHHHHhcCCCccccccee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYA--LVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~~~~~~a~~l~~rt~--e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      .+|+++||.||++|++|++|...+ ++++.+||++.+..++.-. +..-.|  ..|++|       .....|...+....
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gml-l~~~~~q~~fl~Dl-------vt~~~P~s~~sfln   73 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGML-LPGARMQVSFLKDL-------VTLRDPTSPFSFLN   73 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG---SS-B-SS-TTSSS-------STTT-TTSTTSHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccC-CCCCcccccccccc-------CcCcCCCCcccHHH
Confidence            379999999999999999999886 9999999999887765321 111111  112221       11111111111111


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                      |.. ..|+..         .|.    .......+|..+.+.|.-.+.+.+-                   .++++.+|++
T Consensus        74 YL~-~~~rl~---------~f~----~~~~~~p~R~ef~dYl~Wva~~~~~-------------------~v~~~~~V~~  120 (341)
T PF13434_consen   74 YLH-EHGRLY---------EFY----NRGYFFPSRREFNDYLRWVAEQLDN-------------------QVRYGSEVTS  120 (341)
T ss_dssp             HHH-HTT-HH---------HHH----HH--SS-BHHHHHHHHHHHHCCGTT-------------------TEEESEEEEE
T ss_pred             HHH-HcCChh---------hhh----hcCCCCCCHHHHHHHHHHHHHhCCC-------------------ceEECCEEEE
Confidence            100 112111         000    0011234677777777666655432                   5899999999


Q ss_pred             EeeeCC----eEEEEEEeccCCceeeEEEEecEEEeecCC
Q 008258          200 VSATDQ----CINVIASFLKEGKCTERNIQCNILIGTDGA  235 (572)
Q Consensus       200 v~~~~~----~v~v~~~~~~~g~~~~~~i~ad~vVgADG~  235 (572)
                      |+..++    .++|++.. .+|  ...++.|+-||-|-|.
T Consensus       121 I~~~~~~~~~~~~V~~~~-~~g--~~~~~~ar~vVla~G~  157 (341)
T PF13434_consen  121 IEPDDDGDEDLFRVTTRD-SDG--DGETYRARNVVLATGG  157 (341)
T ss_dssp             EEEEEETTEEEEEEEEEE-TTS---EEEEEESEEEE----
T ss_pred             EEEecCCCccEEEEEEee-cCC--CeeEEEeCeEEECcCC
Confidence            987654    37777753 233  3458999999999994

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.11  E-value=8.3e-05  Score=80.93  Aligned_cols=54  Identities=26%  Similarity=0.310  Sum_probs=41.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-CCee-----eeChhHHHHHHh
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-PQAH-----FINNRYALVFRK   97 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~-~~a~-----~l~~rt~e~l~~   97 (572)
                      +||+|||+||+|+++|..|++.|++|+|||+....... +.++     .++..+.++++-
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   60 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNV   60 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHH
Confidence            59999999999999999999999999999999877532 2232     344455555543

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.09  E-value=1.8e-05  Score=87.76  Aligned_cols=34  Identities=32%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             CEEEECCCHHHHHHHHHHH----hCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLT----KLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La----~~Gi~v~viEr~~~~   78 (572)
                      ||||||||.|||++|+.++    +.|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    679999999998643

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.09  E-value=4.3e-05  Score=79.95  Aligned_cols=39  Identities=23%  Similarity=0.344  Sum_probs=35.3

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+.++||+|||||-+|.-+|+-.+-+|+++.++|+...-
T Consensus        64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~  102 (680)
T KOG0042|consen   64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA  102 (680)
T ss_pred             cCCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence            355699999999999999999999999999999998754

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.07  E-value=5e-05  Score=79.90  Aligned_cols=107  Identities=19%  Similarity=0.383  Sum_probs=78.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+.+...               .+                         
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------------~~-------------------------  181 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------------LM-------------------------  181 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch---------------hC-------------------------
Confidence            47999999999999999999999999999987643100               00                         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ..+...+.+.+++.|+                   ++++++++++++.+
T Consensus       182 -----------------------------~-~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~  212 (377)
T PRK04965        182 -----------------------------P-PEVSSRLQHRLTEMGV-------------------HLLLKSQLQGLEKT  212 (377)
T ss_pred             -----------------------------C-HHHHHHHHHHHHhCCC-------------------EEEECCeEEEEEcc
Confidence                                         0 1122345566667776                   88899999999887


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCCh--hhhhhcCCc
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS--TVRKLVGID  246 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S--~VR~~lg~~  246 (572)
                      ++++.+++.   +|+    ++.||+||.|.|..+  .+.+..|+.
T Consensus       213 ~~~~~v~~~---~g~----~i~~D~vI~a~G~~p~~~l~~~~gl~  250 (377)
T PRK04965        213 DSGIRATLD---SGR----SIEVDAVIAAAGLRPNTALARRAGLA  250 (377)
T ss_pred             CCEEEEEEc---CCc----EEECCEEEECcCCCcchHHHHHCCCC
Confidence            777666654   453    689999999999865  344555554

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.07  E-value=3.3e-06  Score=91.68  Aligned_cols=36  Identities=42%  Similarity=0.688  Sum_probs=33.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+||+|||||+.||++|+.|+|+|++|+|+||+..+
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~   38 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV   38 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence            479999999999999999999999999999998765

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.04  E-value=4.1e-05  Score=82.90  Aligned_cols=31  Identities=39%  Similarity=0.734  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      +||+||||||+|+++|..|+++|.+|+|||+
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~   32 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK   32 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            7999999999999999999999999999998

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.03  E-value=9.9e-05  Score=88.25  Aligned_cols=39  Identities=26%  Similarity=0.381  Sum_probs=35.6

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+.++||||||+|.||+++|+..++.|.+|+|+||.+..
T Consensus       406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~  444 (1167)
T PTZ00306        406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL  444 (1167)
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence            356799999999999999999999999999999998754

>PRK13748 putative mercuric reductase; Provisional

Probab=98.03  E-value=8.6e-05  Score=82.45  Aligned_cols=35  Identities=17%  Similarity=0.447  Sum_probs=33.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ..++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus        96 ~~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         96 ERPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            45799999999999999999999999999999986

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.03  E-value=0.00012  Score=79.42  Aligned_cols=36  Identities=22%  Similarity=0.346  Sum_probs=32.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~   78 (572)
                      +.+|+|||||++||++|..|++.    |.+|+|+|+.+.+
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~   61 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP   61 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence            46899999999999999999995    6899999999865

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.02  E-value=6.4e-05  Score=82.32  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=36.6

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      +..++||||||||.|||.+|+.++..|.+|+|+||.+...
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            4567999999999999999999999999999999987654

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.01  E-value=3.2e-05  Score=81.34  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=32.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ++|+|||||++|+.+|+.|+++|++|+|||+++..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            48999999999999999999999999999988764

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.00  E-value=1.3e-05  Score=92.98  Aligned_cols=36  Identities=33%  Similarity=0.601  Sum_probs=33.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~  341 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL  341 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence            468999999999999999999999999999987643

>PRK14727 putative mercuric reductase; Provisional

Probab=98.00  E-value=0.00017  Score=78.37  Aligned_cols=40  Identities=18%  Similarity=0.383  Sum_probs=35.4

Q ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .-.+.++||+||||||+|+++|..|+++|.+|+|+||...
T Consensus        11 ~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~   50 (479)
T PRK14727         11 TRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV   50 (479)
T ss_pred             ccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence            3445679999999999999999999999999999998744

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.00  E-value=0.00015  Score=84.56  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=34.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..++||||||||.|||++|+.+++.|.+|+|+||.+.
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            3568999999999999999999999999999999874

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.99  E-value=2.9e-05  Score=84.72  Aligned_cols=34  Identities=15%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ..+||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            3589999999999999999999999999999974

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.97  E-value=3.7e-05  Score=82.76  Aligned_cols=34  Identities=21%  Similarity=0.443  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~   78 (572)
                      +|+|||||++|+++|..|++.|  .+|+|||+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            6999999999999999999985  589999998764

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.96  E-value=5.9e-05  Score=73.92  Aligned_cols=54  Identities=26%  Similarity=0.375  Sum_probs=42.8

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCC---------CeeeeChhHHH
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHP---------QAHFINNRYAL   93 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~~~~---------~a~~l~~rt~e   93 (572)
                      ...++|.+|||||++||+.|..|.-+  +.+|.|+|+...+..+.         .++...|.++.
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLK  109 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLK  109 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccc
Confidence            35679999999999999999999877  99999999998775432         23455566654

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.95  E-value=0.00014  Score=76.01  Aligned_cols=33  Identities=33%  Similarity=0.487  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ||+|||+|.|||++|+.|++. ++|+|+-|.+..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            899999999999999999998 999999998765

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.93  E-value=1.2e-05  Score=86.87  Aligned_cols=60  Identities=23%  Similarity=0.340  Sum_probs=46.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--------C-----Ceee---eChhHHHHHHhhcchHHHH
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------P-----QAHF---INNRYALVFRKLDGLAEEI  105 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~--------~-----~a~~---l~~rt~e~l~~l~Gl~~~l  105 (572)
                      +|+|||||++||++|+.|+++|++|+|+|+++.+.-.        +     ..+.   ..++.+++|+++ |+.+.+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-g~~~~~   76 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKEL-NIEDRL   76 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHc-CCccce
Confidence            5899999999999999999999999999998753210        0     1121   247889999999 886543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.92  E-value=7.1e-05  Score=80.42  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=31.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS   79 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~   79 (572)
                      +|+|||||++|+.+|..|++.  +.+|+|||+.+...
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~   39 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   39 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence            799999999999999999987  68999999987653

>PRK07208 hypothetical protein; Provisional

Probab=97.92  E-value=1.1e-05  Score=87.69  Aligned_cols=38  Identities=37%  Similarity=0.545  Sum_probs=34.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +...||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~   39 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV   39 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            44569999999999999999999999999999998764

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.91  E-value=4.7e-05  Score=69.47  Aligned_cols=31  Identities=26%  Similarity=0.472  Sum_probs=27.2

Q ss_pred             EEECCCHHHHHHHHHHHhC-----CCCEEEEcCCCC
Q 008258           47 LIVGAGPVGLVLSILLTKL-----GIKCSVLEKNKA   77 (572)
Q Consensus        47 lIVGaGpaGL~~A~~La~~-----Gi~v~viEr~~~   77 (572)
                      +||||||+|++++..|.++     ..+++|||+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            5999999999999999887     578999999543

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.88  E-value=0.00014  Score=85.76  Aligned_cols=37  Identities=30%  Similarity=0.559  Sum_probs=34.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+||+|||||||||++|+.|++.|++|+|+|+.+.+
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~  198 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA  198 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            3579999999999999999999999999999998664

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.87  E-value=0.00018  Score=77.87  Aligned_cols=103  Identities=20%  Similarity=0.328  Sum_probs=75.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.                   +++.                    
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------~~~d--------------------  214 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------PGTD--------------------  214 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------CCCC--------------------
Confidence            3579999999999999999999999999999865431                   0100                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+...+.+.+++.|+                   +++.++++++++.
T Consensus       215 --------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~  243 (466)
T PRK06115        215 --------------------------------TETAKTLQKALTKQGM-------------------KFKLGSKVTGATA  243 (466)
T ss_pred             --------------------------------HHHHHHHHHHHHhcCC-------------------EEEECcEEEEEEE
Confidence                                            1122345566666776                   8999999999987


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +++++.+++...++|  ...++.+|.||-|-|...
T Consensus       244 ~~~~v~v~~~~~~~g--~~~~i~~D~vi~a~G~~p  276 (466)
T PRK06115        244 GADGVSLTLEPAAGG--AAETLQADYVLVAIGRRP  276 (466)
T ss_pred             cCCeEEEEEEEcCCC--ceeEEEeCEEEEccCCcc
Confidence            777777766532233  234689999999999764

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.86  E-value=0.00021  Score=77.38  Aligned_cols=101  Identities=20%  Similarity=0.340  Sum_probs=74.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   +.+                     
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------~~~---------------------  209 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------PGE---------------------  209 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------CCC---------------------
Confidence            3589999999999999999999999999999876431                   000                     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                     ...+...+.+.+++.|+                   ++++++++++++.
T Consensus       210 -------------------------------~~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~  239 (461)
T TIGR01350       210 -------------------------------DAEVSKVVAKALKKKGV-------------------KILTNTKVTAVEK  239 (461)
T ss_pred             -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEE
Confidence                                           01222335566667776                   8999999999988


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +++++.++..   +|.  +.++.+|.||.|.|....
T Consensus       240 ~~~~v~v~~~---~g~--~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       240 NDDQVVYENK---GGE--TETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             eCCEEEEEEe---CCc--EEEEEeCEEEEecCCccc
Confidence            7777766543   342  236899999999997664

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.85  E-value=1.5e-05  Score=85.64  Aligned_cols=35  Identities=29%  Similarity=0.542  Sum_probs=32.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ++||+||||||+|+++|+.|+++|.+|+|||+.+.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~   37 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA   37 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence            58999999999999999999999999999998753

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.85  E-value=0.00017  Score=77.97  Aligned_cols=100  Identities=21%  Similarity=0.323  Sum_probs=74.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   +.+.                    
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~d--------------------  215 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------SFLD--------------------  215 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------CcCC--------------------
Confidence            3579999999999999999999999999999876431                   0000                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+...|.+.+++.|+                   +++.++++++++.
T Consensus       216 --------------------------------~~~~~~l~~~l~~~gI-------------------~v~~~~~v~~i~~  244 (461)
T PRK05249        216 --------------------------------DEISDALSYHLRDSGV-------------------TIRHNEEVEKVEG  244 (461)
T ss_pred             --------------------------------HHHHHHHHHHHHHcCC-------------------EEEECCEEEEEEE
Confidence                                            1122345556666676                   8899999999987


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      +++++.+++.   +|.    ++++|.||.|.|.+...
T Consensus       245 ~~~~~~v~~~---~g~----~i~~D~vi~a~G~~p~~  274 (461)
T PRK05249        245 GDDGVIVHLK---SGK----KIKADCLLYANGRTGNT  274 (461)
T ss_pred             eCCeEEEEEC---CCC----EEEeCEEEEeecCCccc
Confidence            7777666543   443    68999999999976543

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.84  E-value=0.00027  Score=75.35  Aligned_cols=110  Identities=26%  Similarity=0.402  Sum_probs=81.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ...-.++|||||+.|+=+|..+++.|.+|+|+|+.+.+-                   ++..                  
T Consensus       171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------p~~D------------------  213 (454)
T COG1249         171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------PGED------------------  213 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------CcCC------------------
Confidence            344579999999999999999999999999999987752                   1111                  


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                                                        .++.+.+.+.+++.|+                   +++.+++++.+
T Consensus       214 ----------------------------------~ei~~~~~~~l~~~gv-------------------~i~~~~~v~~~  240 (454)
T COG1249         214 ----------------------------------PEISKELTKQLEKGGV-------------------KILLNTKVTAV  240 (454)
T ss_pred             ----------------------------------HHHHHHHHHHHHhCCe-------------------EEEccceEEEE
Confidence                                              1334456666666555                   89999999999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCc
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID  246 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~  246 (572)
                      +..++++.+++.   +|...  ++++|.|+.|-|..- --+.||++
T Consensus       241 ~~~~~~v~v~~~---~g~~~--~~~ad~vLvAiGR~P-n~~~LgLe  280 (454)
T COG1249         241 EKKDDGVLVTLE---DGEGG--TIEADAVLVAIGRKP-NTDGLGLE  280 (454)
T ss_pred             EecCCeEEEEEe---cCCCC--EEEeeEEEEccCCcc-CCCCCChh
Confidence            998887777776   44211  688999999999653 33334443

>PRK06116 glutathione reductase; Validated

Probab=97.84  E-value=1.6e-05  Score=85.78  Aligned_cols=34  Identities=18%  Similarity=0.361  Sum_probs=32.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4689999999999999999999999999999985

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.82  E-value=1.7e-05  Score=85.14  Aligned_cols=35  Identities=29%  Similarity=0.508  Sum_probs=33.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ++||+||||||+|+++|+.|++.|.+|+||||.+.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            58999999999999999999999999999999764

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.82  E-value=0.00083  Score=67.79  Aligned_cols=55  Identities=15%  Similarity=0.366  Sum_probs=43.0

Q ss_pred             ceEEeccEEEEEeeeCC-eEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCc
Q 008258          189 REILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID  246 (572)
Q Consensus       189 ~~i~~g~~v~~v~~~~~-~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~  246 (572)
                      .+++.+++|++.+.+.+ .|.+++....++  +.++++||.+..|-|.+ |.-+-||++
T Consensus       267 ikF~l~tkv~~a~~~~dg~v~i~ve~ak~~--k~~tle~DvlLVsiGRr-P~t~GLgle  322 (506)
T KOG1335|consen  267 IKFKLGTKVTSATRNGDGPVEIEVENAKTG--KKETLECDVLLVSIGRR-PFTEGLGLE  322 (506)
T ss_pred             ceeEeccEEEEeeccCCCceEEEEEecCCC--ceeEEEeeEEEEEccCc-ccccCCChh
Confidence            38999999999999887 788888765555  46689999999999975 445555543

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.82  E-value=2.8e-05  Score=83.68  Aligned_cols=39  Identities=26%  Similarity=0.409  Sum_probs=34.6

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTK--LGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~--~Gi~v~viEr~~~~   78 (572)
                      .....+|+||||||||+.+|..|++  .|++|+||||.+.+
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            3445789999999999999999987  69999999999865

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.82  E-value=0.00026  Score=76.62  Aligned_cols=100  Identities=20%  Similarity=0.364  Sum_probs=74.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+.+.                   +.+.                     
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~~---------------------  212 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------PGED---------------------  212 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------CcCC---------------------
Confidence            479999999999999999999999999999876531                   0000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                     ..+...+.+.+++.|+                   ++++++++++++.+
T Consensus       213 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~~  242 (462)
T PRK06416        213 -------------------------------KEISKLAERALKKRGI-------------------KIKTGAKAKKVEQT  242 (462)
T ss_pred             -------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEEe
Confidence                                           0122334555666676                   89999999999987


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++++.+++.  +++  .+.++.+|.||-|-|...
T Consensus       243 ~~~v~v~~~--~gg--~~~~i~~D~vi~a~G~~p  272 (462)
T PRK06416        243 DDGVTVTLE--DGG--KEETLEADYVLVAVGRRP  272 (462)
T ss_pred             CCEEEEEEE--eCC--eeEEEEeCEEEEeeCCcc
Confidence            777766654  222  334789999999999764

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.81  E-value=0.00019  Score=76.01  Aligned_cols=98  Identities=22%  Similarity=0.342  Sum_probs=71.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                ...  .                      
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l----------------~~~--~----------------------  184 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM----------------GRN--A----------------------  184 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch----------------hhh--c----------------------
Confidence            479999999999999999999999999999876431                000  0                      


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                    ...+...+.+.+++.|+                   ++++++++++++. 
T Consensus       185 ------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~-  214 (396)
T PRK09754        185 ------------------------------PPPVQRYLLQRHQQAGV-------------------RILLNNAIEHVVD-  214 (396)
T ss_pred             ------------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCCeeEEEEc-
Confidence                                          01223345566667776                   8889999999876 


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      ++.+.+++.   +|+    ++.||+||.|-|....
T Consensus       215 ~~~~~v~l~---~g~----~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        215 GEKVELTLQ---SGE----TLQADVVIYGIGISAN  242 (396)
T ss_pred             CCEEEEEEC---CCC----EEECCEEEECCCCChh
Confidence            455555553   453    6899999999998654

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.79  E-value=2.4e-05  Score=84.41  Aligned_cols=38  Identities=29%  Similarity=0.435  Sum_probs=34.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ....+|+|||||+|||+||..|.+.|++|+|+|.+..+
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv   50 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV   50 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence            44579999999999999999999999999999998765

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.78  E-value=2.2e-05  Score=85.69  Aligned_cols=35  Identities=34%  Similarity=0.591  Sum_probs=33.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .||+|||||++||++|..|++.|++|+|+||++.+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            58999999999999999999999999999999765

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.77  E-value=0.00025  Score=77.01  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=31.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ++||+||||||+|+.+|+.+++.|.+|.|||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            489999999999999999999999999999975

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.77  E-value=0.0003  Score=76.46  Aligned_cols=102  Identities=21%  Similarity=0.335  Sum_probs=75.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                   ..                      
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~----------------------  222 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------AA----------------------  222 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------cC----------------------
Confidence            4899999999999999999999999999998764310                   00                      


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ..+...+.+.+.+.|+                   +++.++++++++.+
T Consensus       223 -----------------------------d-~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~~  253 (475)
T PRK06327        223 -----------------------------D-EQVAKEAAKAFTKQGL-------------------DIHLGVKIGEIKTG  253 (475)
T ss_pred             -----------------------------C-HHHHHHHHHHHHHcCc-------------------EEEeCcEEEEEEEc
Confidence                                         0 1122334455556676                   89999999999887


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      ++++.+++.   ++++++.++.+|.||-|-|....
T Consensus       254 ~~~v~v~~~---~~~g~~~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        254 GKGVSVAYT---DADGEAQTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             CCEEEEEEE---eCCCceeEEEcCEEEEccCCccC
Confidence            777776665   22223457899999999997654

>TIGR02730 carot_isom carotene isomerase

Probab=97.76  E-value=2.6e-05  Score=85.11  Aligned_cols=35  Identities=31%  Similarity=0.388  Sum_probs=33.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +||+|||||++||++|..|+++|.+|+|+||+..+
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~   35 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP   35 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            58999999999999999999999999999999775

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.75  E-value=0.0003  Score=76.21  Aligned_cols=32  Identities=28%  Similarity=0.673  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ||+||||||+|+.+|..++++|.+|+|+||.+
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            79999999999999999999999999999864

>PLN02576 protoporphyrinogen oxidase

Probab=97.74  E-value=3.4e-05  Score=84.36  Aligned_cols=38  Identities=29%  Similarity=0.392  Sum_probs=34.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~   78 (572)
                      ...+||+|||||++||++|..|++. |++|+|+|+++.+
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv   48 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV   48 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence            3456999999999999999999999 9999999998765

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.74  E-value=0.00055  Score=74.04  Aligned_cols=101  Identities=20%  Similarity=0.360  Sum_probs=72.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   ++..                    
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------~~~d--------------------  210 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------PGED--------------------  210 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------cccc--------------------
Confidence            3589999999999999999999999999999875431                   0000                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.+.+.+++.|+                   ++++++++++++.
T Consensus       211 --------------------------------~e~~~~l~~~L~~~GI-------------------~i~~~~~V~~i~~  239 (458)
T PRK06912        211 --------------------------------EDIAHILREKLENDGV-------------------KIFTGAALKGLNS  239 (458)
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEE
Confidence                                            1122345566667776                   8899999999987


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      ++..+.  +..  +|.  +.++.+|+||-|.|....+
T Consensus       240 ~~~~v~--~~~--~g~--~~~i~~D~vivA~G~~p~~  270 (458)
T PRK06912        240 YKKQAL--FEY--EGS--IQEVNAEFVLVSVGRKPRV  270 (458)
T ss_pred             cCCEEE--EEE--CCc--eEEEEeCEEEEecCCccCC
Confidence            655443  331  332  2368999999999976543

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.73  E-value=0.0002  Score=75.90  Aligned_cols=35  Identities=17%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~   78 (572)
                      .+|+|||||+||+++|..|++.|.  +|+|+++.+..
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            479999999999999999999986  79999987654

>PLN02487 zeta-carotene desaturase

Probab=97.72  E-value=6.8e-05  Score=82.39  Aligned_cols=63  Identities=22%  Similarity=0.341  Sum_probs=49.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--------CC-----Ceee---eChhHHHHHHhhcchHHHHH
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--------HP-----QAHF---INNRYALVFRKLDGLAEEIE  106 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~--------~~-----~a~~---l~~rt~e~l~~l~Gl~~~l~  106 (572)
                      ..+|+|||||++||++|+.|++.|++|+|+|+.+.+.-        .+     ..|.   ..++.+++++++ |+.+++.
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~L-Gl~~~~~  153 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKV-GADENLL  153 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhc-CCccccc
Confidence            45999999999999999999999999999999886531        11     1122   236789999999 9877654

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.72  E-value=3.6e-05  Score=75.91  Aligned_cols=51  Identities=20%  Similarity=0.419  Sum_probs=41.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhc
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD   99 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~   99 (572)
                      ++||+|||||.||+++|+.|+++|.+++||.+....      .-.+..++++|..+|
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQsA------LhfsSGslDlL~~lP   52 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSA------LHFSSGSLDLLGRLP   52 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChhh------hhcccccHHHhhcCC
Confidence            589999999999999999999999999999877543      333445566766653

>TIGR02053 MerA mercuric reductase

Probab=97.71  E-value=0.00044  Score=74.91  Aligned_cols=101  Identities=14%  Similarity=0.290  Sum_probs=72.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                   ...                     
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d---------------------  206 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------REE---------------------  206 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------ccC---------------------
Confidence            5899999999999999999999999999998754310                   000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                     ..+...+.+.+++.|+                   ++++++++++++.+
T Consensus       207 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~~  236 (463)
T TIGR02053       207 -------------------------------PEISAAVEEALAEEGI-------------------EVVTSAQVKAVSVR  236 (463)
T ss_pred             -------------------------------HHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEc
Confidence                                           0112334455566666                   88999999999877


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      ++.+.+++..  ++.  ..++.+|.||-|-|....
T Consensus       237 ~~~~~v~~~~--~~~--~~~i~~D~ViiA~G~~p~  267 (463)
T TIGR02053       237 GGGKIITVEK--PGG--QGEVEADELLVATGRRPN  267 (463)
T ss_pred             CCEEEEEEEe--CCC--ceEEEeCEEEEeECCCcC
Confidence            6666666542  121  236899999999997543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.70  E-value=3.6e-05  Score=83.40  Aligned_cols=34  Identities=41%  Similarity=0.681  Sum_probs=32.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3589999999999999999999999999999985

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.70  E-value=0.00048  Score=74.63  Aligned_cols=102  Identities=23%  Similarity=0.394  Sum_probs=74.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   +..                      
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------~~~----------------------  211 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------PNE----------------------  211 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------Ccc----------------------
Confidence            479999999999999999999999999999765431                   000                      


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ..+.+.+.+.+++.|+                   ++++++++++++.+
T Consensus       212 -----------------------------d-~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~  242 (466)
T PRK07818        212 -----------------------------D-AEVSKEIAKQYKKLGV-------------------KILTGTKVESIDDN  242 (466)
T ss_pred             -----------------------------C-HHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEEe
Confidence                                         0 1223345566677776                   89999999999877


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      ++.+.+++.. .+|+  ..++.+|.||-|-|....
T Consensus       243 ~~~~~v~~~~-~~g~--~~~i~~D~vi~a~G~~pn  274 (466)
T PRK07818        243 GSKVTVTVSK-KDGK--AQELEADKVLQAIGFAPR  274 (466)
T ss_pred             CCeEEEEEEe-cCCC--eEEEEeCEEEECcCcccC
Confidence            6666665542 2342  347899999999997543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.70  E-value=0.00051  Score=74.50  Aligned_cols=102  Identities=20%  Similarity=0.318  Sum_probs=72.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.                   +.+.                     
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------~~~d---------------------  214 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------PAAD---------------------  214 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------CcCC---------------------
Confidence            489999999999999999999999999999876531                   0000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                     ..+...+.+.+++. +                   ++++++++++++.+
T Consensus       215 -------------------------------~~~~~~~~~~l~~~-v-------------------~i~~~~~v~~i~~~  243 (471)
T PRK06467        215 -------------------------------KDIVKVFTKRIKKQ-F-------------------NIMLETKVTAVEAK  243 (471)
T ss_pred             -------------------------------HHHHHHHHHHHhhc-e-------------------EEEcCCEEEEEEEc
Confidence                                           01122333444443 4                   78889999999877


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      ++++.+++.   ++++...++++|.||-|-|.+..+
T Consensus       244 ~~~~~v~~~---~~~~~~~~i~~D~vi~a~G~~pn~  276 (471)
T PRK06467        244 EDGIYVTME---GKKAPAEPQRYDAVLVAVGRVPNG  276 (471)
T ss_pred             CCEEEEEEE---eCCCcceEEEeCEEEEeecccccC
Confidence            777776664   222123469999999999986543

>PRK06370 mercuric reductase; Validated

Probab=97.69  E-value=0.0005  Score=74.44  Aligned_cols=101  Identities=18%  Similarity=0.314  Sum_probs=73.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.                   ++..                     
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~~---------------------  211 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------PRED---------------------  211 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------cccC---------------------
Confidence            589999999999999999999999999999876541                   0000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                     ..+.+.+.+.+++.|+                   ++++++++++++.+
T Consensus       212 -------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~~  241 (463)
T PRK06370        212 -------------------------------EDVAAAVREILEREGI-------------------DVRLNAECIRVERD  241 (463)
T ss_pred             -------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEc
Confidence                                           0122334555666776                   89999999999887


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      ++++.+++... ++   ..++.+|.||-|-|....
T Consensus       242 ~~~~~v~~~~~-~~---~~~i~~D~Vi~A~G~~pn  272 (463)
T PRK06370        242 GDGIAVGLDCN-GG---APEITGSHILVAVGRVPN  272 (463)
T ss_pred             CCEEEEEEEeC-CC---ceEEEeCEEEECcCCCcC
Confidence            77766665421 11   236899999999997543

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.69  E-value=4.9e-05  Score=82.34  Aligned_cols=61  Identities=23%  Similarity=0.343  Sum_probs=46.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--------CC-----Ceee---eChhHHHHHHhhcchHHHHH
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--------HP-----QAHF---INNRYALVFRKLDGLAEEIE  106 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~--------~~-----~a~~---l~~rt~e~l~~l~Gl~~~l~  106 (572)
                      +|+|||||++||++|..|+++|++|+|+|+++.+.-        .+     ..|.   ..++..++++++ |+.+.+.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~l-g~~~~~~   77 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKV-GAEDNLL   77 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHc-CCccccc
Confidence            589999999999999999999999999999876521        11     1122   236678888888 8876653

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.68  E-value=0.00081  Score=72.72  Aligned_cols=32  Identities=22%  Similarity=0.590  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|+||||||+|+++|..|++.|.+|+||||.+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence            79999999999999999999999999999864

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.67  E-value=4.5e-05  Score=79.48  Aligned_cols=35  Identities=37%  Similarity=0.581  Sum_probs=32.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +||+|||||++||++|..|++.|.+|+|+|+++..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i   36 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI   36 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            69999999999999999999999999999997643

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.66  E-value=4.2e-05  Score=82.74  Aligned_cols=33  Identities=39%  Similarity=0.650  Sum_probs=31.5

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      .++||+||||||+|+++|..|++.|.+|+|||+
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~   34 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK   34 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            358999999999999999999999999999998

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.65  E-value=3.9e-05  Score=83.97  Aligned_cols=33  Identities=36%  Similarity=0.562  Sum_probs=31.5

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        46 VlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      |+|||||++||++|..|++.|++|+|+||+..+
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~   33 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP   33 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            699999999999999999999999999999875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.64  E-value=0.00031  Score=75.17  Aligned_cols=38  Identities=16%  Similarity=0.175  Sum_probs=33.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+.+|||||||.+|+.+|..|.+.+++|+|||+++..
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            34468999999999999999998778999999987654

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00021  Score=66.74  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=31.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ....+|+|||.||++-++|+++++..++-+++|-.
T Consensus         6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~   40 (322)
T KOG0404|consen    6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGM   40 (322)
T ss_pred             eeeeeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence            44568999999999999999999999999999954

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.62  E-value=5.6e-05  Score=87.38  Aligned_cols=37  Identities=32%  Similarity=0.557  Sum_probs=33.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...+|+|||||||||++|..|++.|++|+|+|+.+.+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            3469999999999999999999999999999998654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=5.3e-05  Score=79.91  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=33.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      +|+|+|||+|||++|..|+.+|++|+|+|+++.+.
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G   36 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG   36 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence            79999999999999999999999999999998763

>PTZ00058 glutathione reductase; Provisional

Probab=97.62  E-value=5.4e-05  Score=83.25  Aligned_cols=37  Identities=19%  Similarity=0.371  Sum_probs=34.0

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      +...++||+||||||+|.++|+.+++.|.+|+||||.
T Consensus        44 ~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         44 KPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             CCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            3356799999999999999999999999999999986

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.61  E-value=5.8e-05  Score=78.04  Aligned_cols=37  Identities=27%  Similarity=0.565  Sum_probs=34.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      .-+|||||||+||+++|+.|++.|++|.++||.+...
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG  160 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG  160 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            3579999999999999999999999999999998763

>PRK06116 glutathione reductase; Validated

Probab=97.61  E-value=0.00061  Score=73.52  Aligned_cols=98  Identities=19%  Similarity=0.302  Sum_probs=72.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+++++.+.+.                .   ...                    
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------~---~~~--------------------  207 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL----------------R---GFD--------------------  207 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc----------------c---ccC--------------------
Confidence            3579999999999999999999999999999875431                0   000                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+...+.+.+++.|+                   ++++++++.+++.
T Consensus       208 --------------------------------~~~~~~l~~~L~~~GV-------------------~i~~~~~V~~i~~  236 (450)
T PRK06116        208 --------------------------------PDIRETLVEEMEKKGI-------------------RLHTNAVPKAVEK  236 (450)
T ss_pred             --------------------------------HHHHHHHHHHHHHCCc-------------------EEECCCEEEEEEE
Confidence                                            0122344556667776                   8999999999987


Q ss_pred             eCCe-EEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++++ +++++.   +|+    ++.+|.||.|-|.+.
T Consensus       237 ~~~g~~~v~~~---~g~----~i~~D~Vv~a~G~~p  265 (450)
T PRK06116        237 NADGSLTLTLE---DGE----TLTVDCLIWAIGREP  265 (450)
T ss_pred             cCCceEEEEEc---CCc----EEEeCEEEEeeCCCc
Confidence            6555 555543   453    689999999999754

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.59  E-value=0.00068  Score=72.84  Aligned_cols=36  Identities=33%  Similarity=0.514  Sum_probs=32.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  192 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI  192 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            347999999999999999999999999999997653

>TIGR02053 MerA mercuric reductase

Probab=97.59  E-value=6.3e-05  Score=81.43  Aligned_cols=33  Identities=21%  Similarity=0.497  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +||+||||||+|+++|+.|+++|.+|+||||.+
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            699999999999999999999999999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.57  E-value=8.2e-05  Score=80.36  Aligned_cols=37  Identities=27%  Similarity=0.422  Sum_probs=33.6

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...||+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~  175 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP  175 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            4469999999999999999999999999999987653

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.56  E-value=0.001  Score=72.24  Aligned_cols=36  Identities=28%  Similarity=0.570  Sum_probs=32.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i  215 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI  215 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            358999999999999999999999999999987653

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.55  E-value=7.6e-05  Score=79.63  Aligned_cols=38  Identities=26%  Similarity=0.398  Sum_probs=35.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||+|||+|.+|+++|.+|++.|.+|+++||+...
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~y   39 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYY   39 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCc
Confidence            45799999999999999999999999999999999765

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.00016  Score=71.74  Aligned_cols=32  Identities=31%  Similarity=0.633  Sum_probs=28.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEE
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVL   72 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~vi   72 (572)
                      ...+||+||||||+|.++|++-+|.|++.=|+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~  240 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV  240 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence            44699999999999999999999999986554

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.52  E-value=0.00049  Score=72.01  Aligned_cols=34  Identities=9%  Similarity=0.295  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~   78 (572)
                      +|+|||||++|+.+|..|+++   +.+|+|||+.+..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            489999999999999999754   6899999987664

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.51  E-value=0.00099  Score=71.77  Aligned_cols=98  Identities=19%  Similarity=0.371  Sum_probs=72.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   +++.                    
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~d--------------------  206 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------RGFD--------------------  206 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------cccC--------------------
Confidence            3479999999999999999999999999999865431                   0100                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+...+.+.+.+.|+                   +++.++++.+++.
T Consensus       207 --------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~  235 (446)
T TIGR01424       207 --------------------------------DDMRALLARNMEGRGI-------------------RIHPQTSLTSITK  235 (446)
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                            0122234555666676                   8899999999987


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +++++.+++.   +++    ++.+|.||-|-|...
T Consensus       236 ~~~~~~v~~~---~g~----~i~~D~viva~G~~p  263 (446)
T TIGR01424       236 TDDGLKVTLS---HGE----EIVADVVLFATGRSP  263 (446)
T ss_pred             cCCeEEEEEc---CCc----EeecCEEEEeeCCCc
Confidence            7777666554   443    689999999999643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.50  E-value=0.00077  Score=70.93  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=30.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      .+|+|||||+||+.+|..|++.  ..+++||++.+..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~   39 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD   39 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            4899999999999999999886  5689999988754

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.49  E-value=0.00012  Score=72.28  Aligned_cols=35  Identities=34%  Similarity=0.542  Sum_probs=33.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|.+|||||.+|+.+|..|+++|.+|+||||++.+
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI   36 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI   36 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence            69999999999999999999999999999999876

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.48  E-value=0.0012  Score=71.39  Aligned_cols=98  Identities=17%  Similarity=0.295  Sum_probs=73.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.+                   ...                     
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d---------------------  217 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------GED---------------------  217 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------CCC---------------------
Confidence            4799999999999999999999999999998654310                   000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                     ..+...+.+.+++.|+                   +++.++++++++.+
T Consensus       218 -------------------------------~~~~~~l~~~L~~~gV-------------------~i~~~~~v~~v~~~  247 (466)
T PRK07845        218 -------------------------------ADAAEVLEEVFARRGM-------------------TVLKRSRAESVERT  247 (466)
T ss_pred             -------------------------------HHHHHHHHHHHHHCCc-------------------EEEcCCEEEEEEEe
Confidence                                           0122345566667776                   88899999999877


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      ++++.+++.   +|+    ++.+|.||-|-|....
T Consensus       248 ~~~~~v~~~---~g~----~l~~D~vl~a~G~~pn  275 (466)
T PRK07845        248 GDGVVVTLT---DGR----TVEGSHALMAVGSVPN  275 (466)
T ss_pred             CCEEEEEEC---CCc----EEEecEEEEeecCCcC
Confidence            777766553   453    6899999999997654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.48  E-value=0.00014  Score=82.81  Aligned_cols=35  Identities=29%  Similarity=0.516  Sum_probs=32.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ...+|+|||||||||++|..|++.|++|+|+|+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            34689999999999999999999999999999863

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.48  E-value=0.0017  Score=70.56  Aligned_cols=98  Identities=14%  Similarity=0.202  Sum_probs=70.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++. .+.                   +++.                     
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------~~~d---------------------  219 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-------------------RGFD---------------------  219 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-------------------cccC---------------------
Confidence            47999999999999999999999999999863 210                   0110                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                     ..+...+.+.+++.|+                   ++++++++++++..
T Consensus       220 -------------------------------~~~~~~l~~~L~~~gV-------------------~i~~~~~v~~v~~~  249 (484)
T TIGR01438       220 -------------------------------QDCANKVGEHMEEHGV-------------------KFKRQFVPIKVEQI  249 (484)
T ss_pred             -------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCceEEEEEEc
Confidence                                           1122344566666776                   88899998888876


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~  236 (572)
                      ++.+.+++.   +++ ...++.+|.||-|-|..
T Consensus       250 ~~~~~v~~~---~~~-~~~~i~~D~vl~a~G~~  278 (484)
T TIGR01438       250 EAKVKVTFT---DST-NGIEEEYDTVLLAIGRD  278 (484)
T ss_pred             CCeEEEEEe---cCC-cceEEEeCEEEEEecCC
Confidence            666666664   332 12368999999999964

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PLN02507 glutathione reductase

Probab=97.48  E-value=0.001  Score=72.56  Aligned_cols=98  Identities=12%  Similarity=0.293  Sum_probs=72.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++.+.+.                   +++.                     
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~d---------------------  243 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------RGFD---------------------  243 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------cccC---------------------
Confidence            479999999999999999999999999999865431                   0000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                     ..+...+.+.+++.|+                   +++.++++.+++.+
T Consensus       244 -------------------------------~~~~~~l~~~l~~~GI-------------------~i~~~~~V~~i~~~  273 (499)
T PLN02507        244 -------------------------------DEMRAVVARNLEGRGI-------------------NLHPRTNLTQLTKT  273 (499)
T ss_pred             -------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEe
Confidence                                           1122334555666676                   88999999999877


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      ++++.+.+.   +|.    ++.+|.||-|-|....
T Consensus       274 ~~~~~v~~~---~g~----~i~~D~vl~a~G~~pn  301 (499)
T PLN02507        274 EGGIKVITD---HGE----EFVADVVLFATGRAPN  301 (499)
T ss_pred             CCeEEEEEC---CCc----EEEcCEEEEeecCCCC
Confidence            677665543   443    5899999999997654

>PRK07846 mycothione reductase; Reviewed

Probab=97.47  E-value=0.0011  Score=71.60  Aligned_cols=35  Identities=20%  Similarity=0.475  Sum_probs=32.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~  200 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR  200 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            35899999999999999999999999999998754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.46  E-value=0.00015  Score=78.12  Aligned_cols=38  Identities=32%  Similarity=0.427  Sum_probs=34.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ....+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            34579999999999999999999999999999997654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.44  E-value=0.0013  Score=70.97  Aligned_cols=99  Identities=20%  Similarity=0.223  Sum_probs=71.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   +++.                    
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------~~~d--------------------  206 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------RSFD--------------------  206 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------cccC--------------------
Confidence            3589999999999999999999999999999875531                   0100                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+...+.+.+++.|+                   +++.++++++++.
T Consensus       207 --------------------------------~~~~~~~~~~l~~~gI-------------------~i~~~~~v~~i~~  235 (450)
T TIGR01421       207 --------------------------------SMISETITEEYEKEGI-------------------NVHKLSKPVKVEK  235 (450)
T ss_pred             --------------------------------HHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEEE
Confidence                                            1122345566666776                   8899999999987


Q ss_pred             eCCe-EEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++++ +.+++.   +|.   .++.+|.||-|-|...
T Consensus       236 ~~~~~~~v~~~---~g~---~~i~~D~vi~a~G~~p  265 (450)
T TIGR01421       236 TVEGKLVIHFE---DGK---SIDDVDELIWAIGRKP  265 (450)
T ss_pred             eCCceEEEEEC---CCc---EEEEcCEEEEeeCCCc
Confidence            6544 555543   442   2689999999998654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.44  E-value=0.00011  Score=74.60  Aligned_cols=36  Identities=33%  Similarity=0.481  Sum_probs=31.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFS   79 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~~   79 (572)
                      |||||||+|++|+++|..|++.| .+|+|+|+.+...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence            69999999999999999999997 7999999987643

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.43  E-value=0.0017  Score=69.85  Aligned_cols=98  Identities=15%  Similarity=0.299  Sum_probs=72.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+                   ..                      
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~----------------------  197 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP-------------------RE----------------------  197 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC-------------------Cc----------------------
Confidence            4899999999999999999999999999998654310                   00                      


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ..+.+.|.+.+++.|+                   ++++++++++++.+
T Consensus       198 -----------------------------~-~~~~~~l~~~l~~~gV-------------------~v~~~~~v~~i~~~  228 (441)
T PRK08010        198 -----------------------------D-RDIADNIATILRDQGV-------------------DIILNAHVERISHH  228 (441)
T ss_pred             -----------------------------C-HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEc
Confidence                                         0 1122345566777776                   88999999999877


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      ++.++++..   ++     ++.+|.||-|-|.....
T Consensus       229 ~~~v~v~~~---~g-----~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        229 ENQVQVHSE---HA-----QLAVDALLIASGRQPAT  256 (441)
T ss_pred             CCEEEEEEc---CC-----eEEeCEEEEeecCCcCC
Confidence            666555432   33     47899999999977643

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.42  E-value=0.00021  Score=76.01  Aligned_cols=37  Identities=30%  Similarity=0.308  Sum_probs=32.3

Q ss_pred             cCCEEEECCCHHHHHHHHHH-HhCCCCEEEEcCCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILL-TKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~L-a~~Gi~v~viEr~~~~~   79 (572)
                      ...|+||||||||+.+|..| ++.|++|.|+||.+.+-
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            35799999999999999965 56799999999998773

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.42  E-value=0.00016  Score=83.44  Aligned_cols=36  Identities=31%  Similarity=0.574  Sum_probs=33.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|+||||||||+++|..|++.|++|+|+|+.+.+
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~  574 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA  574 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            458999999999999999999999999999998764

>PRK02106 choline dehydrogenase; Validated

Probab=97.41  E-value=0.00016  Score=80.21  Aligned_cols=39  Identities=26%  Similarity=0.363  Sum_probs=35.2

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKA   77 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~-~Gi~v~viEr~~~   77 (572)
                      |+..++||+|||||++|+.+|..|++ .|++|+|||+.+.
T Consensus         1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            34566999999999999999999999 7999999999864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.40  E-value=0.00018  Score=76.20  Aligned_cols=34  Identities=24%  Similarity=0.504  Sum_probs=32.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ++||+|||||++|+++|+.|+++|.+|+|||+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4899999999999999999999999999999874

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.39  E-value=0.0013  Score=68.25  Aligned_cols=40  Identities=33%  Similarity=0.395  Sum_probs=33.3

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhC-----CCCEEEEcCCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKL-----GIKCSVLEKNKAF   78 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~-----Gi~v~viEr~~~~   78 (572)
                      .+...+||+||||||+|+.+|+.|+..     ...+.++|+....
T Consensus        14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~   58 (486)
T COG2509          14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI   58 (486)
T ss_pred             HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence            346679999999999999999999853     5789999987543

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.39  E-value=0.00018  Score=81.25  Aligned_cols=36  Identities=31%  Similarity=0.564  Sum_probs=33.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~  362 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI  362 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            468999999999999999999999999999998654

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.39  E-value=0.00021  Score=73.09  Aligned_cols=65  Identities=25%  Similarity=0.383  Sum_probs=47.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCE--EEEcCCCCCC-----CCCCeee--------------eChhHHHHHHhhcc
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKC--SVLEKNKAFS-----THPQAHF--------------INNRYALVFRKLDG  100 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v--~viEr~~~~~-----~~~~a~~--------------l~~rt~e~l~~l~G  100 (572)
                      ...+|+|||||++||++|++|++++-++  +|+|+.+...     ..+...+              ...++++.+.++ |
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL-G   88 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL-G   88 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc-C
Confidence            3468999999999999999999998765  5599887541     1111111              123678888999 9


Q ss_pred             hHHHHHh
Q 008258          101 LAEEIER  107 (572)
Q Consensus       101 l~~~l~~  107 (572)
                      +.+++..
T Consensus        89 l~~e~~~   95 (491)
T KOG1276|consen   89 LEDELQP   95 (491)
T ss_pred             ccceeee
Confidence            9877654

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.39  E-value=0.0022  Score=69.46  Aligned_cols=36  Identities=31%  Similarity=0.633  Sum_probs=32.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  204 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI  204 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            358999999999999999999999999999987643

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.37  E-value=0.00021  Score=77.49  Aligned_cols=37  Identities=32%  Similarity=0.527  Sum_probs=33.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...+|+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~  178 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI  178 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            3468999999999999999999999999999998765

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.37  E-value=0.0002  Score=84.19  Aligned_cols=36  Identities=33%  Similarity=0.512  Sum_probs=33.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~  465 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV  465 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            468999999999999999999999999999988654

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.36  E-value=0.0018  Score=63.05  Aligned_cols=34  Identities=24%  Similarity=0.487  Sum_probs=31.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G------i~v~viEr~~~   77 (572)
                      ..|+|||||+.|.++|++|++++      ++++|+|++.-
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I   50 (380)
T KOG2852|consen   11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI   50 (380)
T ss_pred             eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc
Confidence            68999999999999999999998      89999998754

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.32  E-value=0.00026  Score=74.26  Aligned_cols=49  Identities=24%  Similarity=0.496  Sum_probs=40.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhh
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL   98 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l   98 (572)
                      +||+|||||++|+++|+.|++.|.+|+|+|+...      +..++..++++|..+
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~------~~~~s~gs~d~L~~~   49 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS------ALHFSSGSLDLLSRL   49 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc------hhhhhhHHHhHhhhc
Confidence            5899999999999999999999999999998642      444566677777655

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.32  E-value=0.00028  Score=76.31  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=33.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            3468999999999999999999999999999998754

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.31  E-value=0.00036  Score=68.98  Aligned_cols=44  Identities=30%  Similarity=0.403  Sum_probs=38.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCe
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA   84 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a   84 (572)
                      +...||+|||||.+||.+|..|+.+|.+|+|+|+..+..-.+++
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            45689999999999999999999999999999998776655554

>PLN02546 glutathione reductase

Probab=97.31  E-value=0.00031  Score=77.31  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=32.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      ..++||+||||||+|..+|+.++++|.+|.|+|+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            4468999999999999999999999999999996

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.30  E-value=0.0015  Score=75.23  Aligned_cols=107  Identities=19%  Similarity=0.412  Sum_probs=74.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-.               +.+                         
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~---------------~~l-------------------------  180 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA---------------KQL-------------------------  180 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh---------------hhc-------------------------
Confidence            4799999999999999999999999999997653210               001                         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ..+...+.+.+++.|+                   ++++++.++++..+
T Consensus       181 -----------------------------d-~~~~~~l~~~l~~~GV-------------------~v~~~~~v~~i~~~  211 (785)
T TIGR02374       181 -----------------------------D-QTAGRLLQRELEQKGL-------------------TFLLEKDTVEIVGA  211 (785)
T ss_pred             -----------------------------C-HHHHHHHHHHHHHcCC-------------------EEEeCCceEEEEcC
Confidence                                         0 0122345566667776                   88889988888765


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh--hhhhcCCc
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGID  246 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~--VR~~lg~~  246 (572)
                      +....+++.   +|+    ++.+|+||-|-|.+..  +-+..|+.
T Consensus       212 ~~~~~v~~~---dG~----~i~~D~Vi~a~G~~Pn~~la~~~gl~  249 (785)
T TIGR02374       212 TKADRIRFK---DGS----SLEADLIVMAAGIRPNDELAVSAGIK  249 (785)
T ss_pred             CceEEEEEC---CCC----EEEcCEEEECCCCCcCcHHHHhcCCc
Confidence            544445554   554    6899999999997643  33444443

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.28  E-value=0.0027  Score=68.05  Aligned_cols=34  Identities=21%  Similarity=0.486  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  171 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER  171 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            4799999999999999999999999999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.28  E-value=0.00026  Score=81.23  Aligned_cols=37  Identities=30%  Similarity=0.446  Sum_probs=33.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~  466 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI  466 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3468999999999999999999999999999997543

>TIGR03452 mycothione_red mycothione reductase

Probab=97.26  E-value=0.0032  Score=67.92  Aligned_cols=35  Identities=17%  Similarity=0.457  Sum_probs=31.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  203 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK  203 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence            35899999999999999999999999999998654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN02529 lysine-specific histone demethylase 1

Probab=97.26  E-value=0.00034  Score=78.73  Aligned_cols=36  Identities=39%  Similarity=0.505  Sum_probs=33.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...+|+||||||+||++|..|+++|++|+|+|++..
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~  194 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR  194 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence            457999999999999999999999999999999864

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.25  E-value=0.0026  Score=67.29  Aligned_cols=98  Identities=28%  Similarity=0.468  Sum_probs=72.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      .+|+|||+|+.|+.+|..|+++|++|+++|+.+.+...                   +.                     
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-------------------~~---------------------  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-------------------LL---------------------  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-------------------hh---------------------
Confidence            68999999999999999999999999999998765210                   00                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                 .   ..+-..+.+.+++.|+                   +++++.+++.++..
T Consensus       177 ---------------------------~---~~~~~~~~~~l~~~gi-------------------~~~~~~~~~~i~~~  207 (415)
T COG0446         177 ---------------------------D---PEVAEELAELLEKYGV-------------------ELLLGTKVVGVEGK  207 (415)
T ss_pred             ---------------------------h---HHHHHHHHHHHHHCCc-------------------EEEeCCceEEEEcc
Confidence                                       0   1233445666667776                   88899999999887


Q ss_pred             CCeEEE---EEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          204 DQCINV---IASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       204 ~~~v~v---~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      .+....   ...   ++.    .+.+|+++.+-|.+-
T Consensus       208 ~~~~~~~~~~~~---~~~----~~~~d~~~~~~g~~p  237 (415)
T COG0446         208 GNTLVVERVVGI---DGE----EIKADLVIIGPGERP  237 (415)
T ss_pred             cCcceeeEEEEe---CCc----EEEeeEEEEeecccc
Confidence            765442   222   332    689999999998765

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.23  E-value=0.0012  Score=67.61  Aligned_cols=158  Identities=18%  Similarity=0.257  Sum_probs=91.3

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccc
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK  117 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~  117 (572)
                      |++..+|++.||-||.-|.+|++|..++ .+++.+||.+.+..+|... +...+|++    + ..+.+.....|...+..
T Consensus         1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGml-legstlQv----~-FlkDLVTl~~PTs~ySF   74 (436)
T COG3486           1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGML-LEGSTLQV----P-FLKDLVTLVDPTSPYSF   74 (436)
T ss_pred             CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcc-cCCccccc----c-chhhhccccCCCCchHH
Confidence            3467789999999999999999999885 7899999999999887542 22223322    1 11222222233221111


Q ss_pred             eeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258          118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (572)
Q Consensus       118 ~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v  197 (572)
                      .-|. ...|+...             .--....+++|.+..+.+.=.+....                    .++||.+|
T Consensus        75 LNYL-~~h~RLy~-------------Fl~~e~f~i~R~Ey~dY~~Waa~~l~--------------------~~rfg~~V  120 (436)
T COG3486          75 LNYL-HEHGRLYE-------------FLNYETFHIPRREYNDYCQWAASQLP--------------------SLRFGEEV  120 (436)
T ss_pred             HHHH-HHcchHhh-------------hhhhhcccccHHHHHHHHHHHHhhCC--------------------ccccCCee
Confidence            1010 11222110             11222456788888887765555542                    68899999


Q ss_pred             EEEee-eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhh
Q 008258          198 VSVSA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (572)
Q Consensus       198 ~~v~~-~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR  240 (572)
                      +.|.. +.+.+...+....+++    ..+|+=||-.-|..=.+-
T Consensus       121 ~~i~~~~~d~~~~~~~~t~~~~----~y~ar~lVlg~G~~P~IP  160 (436)
T COG3486         121 TDISSLDGDAVVRLFVVTANGT----VYRARNLVLGVGTQPYIP  160 (436)
T ss_pred             ccccccCCcceeEEEEEcCCCc----EEEeeeEEEccCCCcCCC
Confidence            97733 2233222222112332    678888888888654443

>PRK14694 putative mercuric reductase; Provisional

Probab=97.22  E-value=0.0032  Score=68.24  Aligned_cols=32  Identities=31%  Similarity=0.564  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            47999999999999999999999999999863

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.21  E-value=0.00043  Score=74.92  Aligned_cols=37  Identities=27%  Similarity=0.581  Sum_probs=33.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            3468999999999999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.21  E-value=0.0038  Score=67.88  Aligned_cols=97  Identities=16%  Similarity=0.266  Sum_probs=70.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++. ..-                   +...                     
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l-------------------~~~d---------------------  227 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLL-------------------FRED---------------------  227 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCC-------------------Ccch---------------------
Confidence            47999999999999999999999999999864 210                   0000                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                     ..+...+.+.+++.|+                   ++++++++++++.+
T Consensus       228 -------------------------------~~~~~~l~~~L~~~GV-------------------~i~~~~~V~~i~~~  257 (479)
T PRK14727        228 -------------------------------PLLGETLTACFEKEGI-------------------EVLNNTQASLVEHD  257 (479)
T ss_pred             -------------------------------HHHHHHHHHHHHhCCC-------------------EEEcCcEEEEEEEe
Confidence                                           0122335556667776                   88899999999877


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      ++++.+...   ++     ++.+|.||-|-|.....
T Consensus       258 ~~~~~v~~~---~g-----~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        258 DNGFVLTTG---HG-----ELRAEKLLISTGRHANT  285 (479)
T ss_pred             CCEEEEEEc---CC-----eEEeCEEEEccCCCCCc
Confidence            666655432   33     47899999999987644

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.21  E-value=0.0032  Score=67.73  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=30.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~  183 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR  183 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            4799999999999999999999999999987643

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.17  E-value=0.00043  Score=77.99  Aligned_cols=36  Identities=31%  Similarity=0.523  Sum_probs=33.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~  228 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA  228 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            458999999999999999999999999999998764

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.17  E-value=0.00042  Score=73.88  Aligned_cols=36  Identities=36%  Similarity=0.657  Sum_probs=33.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +.++||+||||||+|.++|+.+++.|.+|.++|+..
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            457999999999999999999999999999999986

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.16  E-value=0.0034  Score=67.43  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  182 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK  182 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            4799999999999999999999999999998754

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.16  E-value=0.0029  Score=73.05  Aligned_cols=107  Identities=15%  Similarity=0.263  Sum_probs=74.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -.|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-.               +.+                         
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~---------------~~l-------------------------  185 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA---------------EQL-------------------------  185 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh---------------hhc-------------------------
Confidence            4799999999999999999999999999998654210               001                         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ......|.+.+++.|+                   +++.+++++++..+
T Consensus       186 -----------------------------d-~~~~~~l~~~L~~~GV-------------------~v~~~~~v~~I~~~  216 (847)
T PRK14989        186 -----------------------------D-QMGGEQLRRKIESMGV-------------------RVHTSKNTLEIVQE  216 (847)
T ss_pred             -----------------------------C-HHHHHHHHHHHHHCCC-------------------EEEcCCeEEEEEec
Confidence                                         0 1122345666777787                   89999999999764


Q ss_pred             CC--eEEEEEEeccCCceeeEEEEecEEEeecCCChhh--hhhcCCc
Q 008258          204 DQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTV--RKLVGID  246 (572)
Q Consensus       204 ~~--~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V--R~~lg~~  246 (572)
                      ++  ...+++.   +|+    ++.+|+||-|-|.+...  .+..|+.
T Consensus       217 ~~~~~~~v~~~---dG~----~i~~D~Vv~A~G~rPn~~L~~~~Gl~  256 (847)
T PRK14989        217 GVEARKTMRFA---DGS----ELEVDFIVFSTGIRPQDKLATQCGLA  256 (847)
T ss_pred             CCCceEEEEEC---CCC----EEEcCEEEECCCcccCchHHhhcCcc
Confidence            32  2333333   554    68999999999976543  3344543

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.16  E-value=0.0037  Score=67.89  Aligned_cols=98  Identities=21%  Similarity=0.291  Sum_probs=69.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      -+|+|||||+.|+-+|..|+..   |.+|+|+|+.+.+.                   +.+                   
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------~~~-------------------  229 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------RGF-------------------  229 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------ccc-------------------
Confidence            4799999999999999777654   99999999876531                   000                   


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                                                      + ..+.+.+.+.+++.|+                   +++++++++++
T Consensus       230 --------------------------------d-~~~~~~l~~~L~~~GI-------------------~i~~~~~v~~i  257 (486)
T TIGR01423       230 --------------------------------D-STLRKELTKQLRANGI-------------------NIMTNENPAKV  257 (486)
T ss_pred             --------------------------------C-HHHHHHHHHHHHHcCC-------------------EEEcCCEEEEE
Confidence                                            0 1223445566677776                   88999999999


Q ss_pred             eeeCCe-EEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          201 SATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       201 ~~~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +.++++ +.+++.   +++    ++.+|.||-|-|....
T Consensus       258 ~~~~~~~~~v~~~---~g~----~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       258 TLNADGSKHVTFE---SGK----TLDVDVVMMAIGRVPR  289 (486)
T ss_pred             EEcCCceEEEEEc---CCC----EEEcCEEEEeeCCCcC
Confidence            865444 445443   443    6899999999997654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.15  E-value=0.0019  Score=74.54  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFS   79 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~~   79 (572)
                      .+|+|||||++|+.+|..|.+.    +++|+||++.+.+.
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~   43 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA   43 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence            4899999999999999999764    58999999987753

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.15  E-value=0.0039  Score=68.06  Aligned_cols=31  Identities=35%  Similarity=0.487  Sum_probs=29.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~  213 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR  213 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence            3799999999999999999999999999986

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.13  E-value=0.0032  Score=66.07  Aligned_cols=35  Identities=29%  Similarity=0.386  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~   78 (572)
                      ++|+|||+|++|+.+|..|.+.   .-.+.|+|+++..
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            5899999999999999999886   1239999999876

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.11  E-value=0.00065  Score=70.78  Aligned_cols=37  Identities=35%  Similarity=0.436  Sum_probs=33.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...+|+|||||++|+.+|..|++.|.+|+|||+.+.+
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3468999999999999999999999999999998765

>PTZ00058 glutathione reductase; Provisional

Probab=97.09  E-value=0.0045  Score=68.24  Aligned_cols=35  Identities=17%  Similarity=0.371  Sum_probs=32.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~  271 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR  271 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence            45799999999999999999999999999998754

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.09  E-value=0.00047  Score=74.85  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=31.6

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~   75 (572)
                      .++||+||||||+|.++|+.+++. |.+|.||||.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            358999999999999999999996 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.09  E-value=0.00067  Score=75.90  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=31.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ++||+||||||+|.++|+.++++|.+|.|||+.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            689999999999999999999999999999975

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.08  E-value=0.0018  Score=74.49  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=29.2

Q ss_pred             EEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 008258           46 VLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF   78 (572)
Q Consensus        46 VlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~   78 (572)
                      |+|||||+||+.+|..|.+.   +++|+|||+.+.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            68999999999999998775   5799999988765

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.08  E-value=0.0019  Score=68.40  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=32.5

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..+||+|||||-||+-+|++.+|.|.+++++--+..
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~d   38 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLD   38 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCC
Confidence            349999999999999999999999999999877654

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=97.08  E-value=3.2e-05  Score=78.56  Aligned_cols=80  Identities=36%  Similarity=0.431  Sum_probs=64.4

Q ss_pred             ccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHH
Q 008258          344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL  423 (572)
Q Consensus       344 w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~  423 (572)
                      |..+..++.-.-.  .-+.+-|+|+|++.|.++.+++...++..+|+|+.+..     ....|.+|..|| ++..-+...
T Consensus       232 y~~havVAtl~l~--~~~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~~-----~a~~L~~lp~e~-fv~~lNsaf  303 (481)
T KOG3855|consen  232 YDQHAVVATLKLE--EEAILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSPE-----NASILKSLPEER-FVDLLNSAF  303 (481)
T ss_pred             ccceeeeEEEEec--ccccccchhHHhcCCCCceeecccccccccceeecCHH-----HHHHHhcCCchh-HHHHHHHHH
Confidence            5566777776652  23888999999999999999999999999999998743     357899999999 888777777


Q ss_pred             HHHHHHHh
Q 008258          424 SVQNFRAA  431 (572)
Q Consensus       424 s~~~~~~~  431 (572)
                      +.++.+..
T Consensus       304 ~~q~~~~~  311 (481)
T KOG3855|consen  304 SSQNPRAA  311 (481)
T ss_pred             hccCCCch
Confidence            66665443

>PRK07846 mycothione reductase; Reviewed

Probab=97.07  E-value=0.0044  Score=66.85  Aligned_cols=31  Identities=19%  Similarity=0.304  Sum_probs=27.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ++||+||||||+|.++|..  +.|.+|.||||.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~   31 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG   31 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence            3899999999999988865  469999999985

>PRK13748 putative mercuric reductase; Provisional

Probab=97.06  E-value=0.0053  Score=68.25  Aligned_cols=32  Identities=25%  Similarity=0.499  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      -+|+|||||+.|+-+|..|++.|.+|+|+++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            47999999999999999999999999999974

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.06  E-value=0.0056  Score=61.80  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -+|+|||+|++|+-+|..|++.+.+|+++++.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~  174 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD  174 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence            489999999999999999999999999998854

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.05  E-value=0.00069  Score=76.28  Aligned_cols=36  Identities=28%  Similarity=0.596  Sum_probs=33.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~  345 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI  345 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            468999999999999999999999999999998764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.04  E-value=0.0062  Score=66.86  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~  385 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD  385 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence            489999999999999999999999999998654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.03  E-value=0.0035  Score=61.97  Aligned_cols=34  Identities=32%  Similarity=0.459  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|+|||+|.|||+++.-+-..|-.|+++|+...+
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~   44 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI   44 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence            7999999999999999998876669999999776

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.02  E-value=0.00063  Score=75.54  Aligned_cols=36  Identities=25%  Similarity=0.513  Sum_probs=33.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .-+|+||||||+||++|..|++.|.+|+|+|+.+.+
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~  172 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL  172 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            358999999999999999999999999999998765

>TIGR03452 mycothione_red mycothione reductase

Probab=97.01  E-value=0.0033  Score=67.87  Aligned_cols=31  Identities=16%  Similarity=0.259  Sum_probs=27.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ++||+||||||+|..+|.  +++|.+|.||||.
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~   32 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKG   32 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCC
Confidence            589999999999988864  4579999999985

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.00  E-value=0.008  Score=62.17  Aligned_cols=145  Identities=17%  Similarity=0.177  Sum_probs=78.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCCC----eeeeChhHHHHHHhhcchHHHHHhcCCCccc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAFSTHPQ----AHFINNRYALVFRKLDGLAEEIERSQPPVDL  114 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~~~~~~----a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~  114 (572)
                      .....|+|||||.++.-++..|.+.+-  +|.++=|.+...+..-    ...++|.-++.+..++   ++.+......  
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~---~~~R~~~l~~--  262 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLP---DEERRELLRE--  262 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS----HHHHHHHHHH--
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCC---HHHHHHHHHH--
Confidence            345689999999999999999999875  7999999887643221    2356777777776552   2221110000  


Q ss_pred             ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (572)
Q Consensus       115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g  194 (572)
                      .+                             ...+..++.. +.+.|.+.+-+.-+.             ......++.+
T Consensus       263 ~~-----------------------------~~ny~~i~~~-~l~~iy~~lY~~~v~-------------g~~~~~l~~~  299 (341)
T PF13434_consen  263 QR-----------------------------HTNYGGIDPD-LLEAIYDRLYEQRVS-------------GRGRLRLLPN  299 (341)
T ss_dssp             TG-----------------------------GGTSSEB-HH-HHHHHHHHHHHHHHH-------------T---SEEETT
T ss_pred             hH-----------------------------hhcCCCCCHH-HHHHHHHHHHHHHhc-------------CCCCeEEeCC
Confidence            00                             0001112222 222233322111000             0012488899


Q ss_pred             cEEEEEeeeCC-eEEEEEEeccCCceeeEEEEecEEEeecCC
Q 008258          195 HECVSVSATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGA  235 (572)
Q Consensus       195 ~~v~~v~~~~~-~v~v~~~~~~~g~~~~~~i~ad~vVgADG~  235 (572)
                      ++|++++.+++ ++.+++.+...+  +++++++|+||.|.|-
T Consensus       300 ~~v~~~~~~~~~~~~l~~~~~~~~--~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  300 TEVTSAEQDGDGGVRLTLRHRQTG--EEETLEVDAVILATGY  339 (341)
T ss_dssp             EEEEEEEEES-SSEEEEEEETTT----EEEEEESEEEE---E
T ss_pred             CEEEEEEECCCCEEEEEEEECCCC--CeEEEecCEEEEcCCc
Confidence            99999999884 899999854444  5678999999999994

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.99  E-value=0.0029  Score=62.78  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=32.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...|-|||||.||.-+|+.++++|++|.++|.++..
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            357999999999999999999999999999988753

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.97  E-value=0.001  Score=71.09  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=33.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~  158 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD  158 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence            68999999999999999999999999999998875

>PLN02785 Protein HOTHEAD

Probab=96.96  E-value=0.0013  Score=72.86  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +..+|++|||||.+|+.+|..|++ +.+|+|||+.+.+
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~~   89 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGVP   89 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCCC
Confidence            456999999999999999999999 6999999998753

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.95  E-value=0.0068  Score=66.61  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|+|||||++|+-+|..|+..|.+|+|+++.+.
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~  385 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE  385 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence            4799999999999999999999999999987654

>PRK10262 thioredoxin reductase; Provisional

Probab=96.94  E-value=0.0093  Score=61.20  Aligned_cols=34  Identities=12%  Similarity=0.378  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~  180 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  180 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence            4799999999999999999999999999998753

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.93  E-value=0.001  Score=72.35  Aligned_cols=36  Identities=31%  Similarity=0.501  Sum_probs=33.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            358999999999999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.93  E-value=0.0086  Score=67.15  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=32.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l  347 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL  347 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence            47999999999999999999999999999987653

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.83  E-value=0.0013  Score=72.45  Aligned_cols=37  Identities=32%  Similarity=0.470  Sum_probs=34.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..++|+||||+|.+|+++|..|+..|.+|+|+|+.+.
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~   41 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP   41 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence            5679999999999999999999999999999999864

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=96.83  E-value=0.13  Score=50.79  Aligned_cols=36  Identities=22%  Similarity=0.378  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKAFS   79 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G-------i~v~viEr~~~~~   79 (572)
                      .+|+|||+|..||++|+.+.+.+       ++|.|++-+..+.
T Consensus         4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~   46 (342)
T KOG3923|consen    4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED   46 (342)
T ss_pred             ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence            58999999999999999988854       6788998776553

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.74  E-value=0.011  Score=63.10  Aligned_cols=33  Identities=30%  Similarity=0.514  Sum_probs=27.9

Q ss_pred             CEEEECCCHHHHHHHHHHHh--------------CCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTK--------------LGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~--------------~Gi~v~viEr~~~   77 (572)
                      .|+|||||++|+-+|..|+.              .|.+|+|+|+.+.
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~  221 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE  221 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence            79999999999999999975              3678888887654

>PRK13984 putative oxidoreductase; Provisional

Probab=96.69  E-value=0.002  Score=72.14  Aligned_cols=37  Identities=32%  Similarity=0.484  Sum_probs=33.7

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...+|+||||||+|+++|..|+++|++|+|+|+.+.+
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~  318 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP  318 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            3468999999999999999999999999999998754

>PLN02976 amine oxidase

Probab=96.66  E-value=0.0019  Score=76.07  Aligned_cols=36  Identities=33%  Similarity=0.587  Sum_probs=33.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|+||||||+|+++|+.|++.|++|+|||+++.+
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v  728 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI  728 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence            478999999999999999999999999999997654

>TIGR01810 betA choline dehydrogenase

Probab=96.65  E-value=0.0015  Score=72.04  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~   77 (572)
                      ||||||||.+|+.+|..|++.| ++|+|||+.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999998 79999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PLN02546 glutathione reductase

Probab=96.58  E-value=0.017  Score=63.69  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=31.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~  286 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK  286 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence            34899999999999999999999999999998654

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=96.46  E-value=0.0036  Score=62.59  Aligned_cols=35  Identities=20%  Similarity=0.430  Sum_probs=31.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|+|||+|++||++|..|+++ .+|+++|.....
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rl   42 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRL   42 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccc
Confidence            46899999999999999999885 789999988755

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.40  E-value=0.02  Score=59.60  Aligned_cols=36  Identities=22%  Similarity=0.412  Sum_probs=32.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ...+||+|||||=||+-+|.+-+|.|-+.+++-.+-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l   61 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL   61 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence            567999999999999999999999999999987664

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.40  E-value=0.0038  Score=63.18  Aligned_cols=35  Identities=31%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      ..|.|||+||||+.+|..|.++  +++|.|+||.|.|
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            4899999999999999988874  7999999999876

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=96.40  E-value=0.02  Score=60.22  Aligned_cols=61  Identities=16%  Similarity=0.281  Sum_probs=44.8

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      +++-..+...|.+.+.+ |+                   +++++++|++++.+++++.++..   +|.    +++||.||
T Consensus       131 ~idp~~~~~~l~~~~~~-G~-------------------~i~~~~~V~~i~~~~~~~~v~t~---~g~----~~~a~~vV  183 (381)
T TIGR03197       131 WLSPPQLCRALLAHAGI-RL-------------------TLHFNTEITSLERDGEGWQLLDA---NGE----VIAASVVV  183 (381)
T ss_pred             ccChHHHHHHHHhccCC-Cc-------------------EEEeCCEEEEEEEcCCeEEEEeC---CCC----EEEcCEEE
Confidence            34445566666666655 65                   89999999999987777666543   442    47899999


Q ss_pred             eecCCChh
Q 008258          231 GTDGAGST  238 (572)
Q Consensus       231 gADG~~S~  238 (572)
                      -|.|+.+.
T Consensus       184 ~a~G~~~~  191 (381)
T TIGR03197       184 LANGAQAG  191 (381)
T ss_pred             EcCCcccc
Confidence            99999874

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.33  E-value=0.021  Score=59.46  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      -+|+|||+|+.|+-+|..|.+.|.+ |+|+++++
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            4799999999999999999999997 99998753

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=96.33  E-value=0.0033  Score=65.57  Aligned_cols=38  Identities=29%  Similarity=0.467  Sum_probs=32.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~   78 (572)
                      ....+|+|||||.|||++|..|-+.| .+++|+|.....
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI   57 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI   57 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence            34458999999999999999999765 579999987765

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.31  E-value=0.0032  Score=65.02  Aligned_cols=35  Identities=26%  Similarity=0.507  Sum_probs=33.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      +.++|++|||+|.-||++|..|+|.|.+|+|+||+
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerr   46 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERR   46 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEe
Confidence            56799999999999999999999999999999998

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.29  E-value=0.021  Score=59.71  Aligned_cols=36  Identities=17%  Similarity=0.287  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS   79 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~~   79 (572)
                      ..|+|||||-+|+.+|..|.+.-  .++++|||+....
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl   41 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL   41 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence            57999999999999999999984  9999999997653

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.14  E-value=0.023  Score=59.50  Aligned_cols=51  Identities=29%  Similarity=0.499  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258          157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (572)
Q Consensus       157 L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~  236 (572)
                      +.+...+.+++.|+                   +|+.++.|++++++.    |++.   +|.  + +|.|+.+|=|-|.+
T Consensus       211 l~~~a~~~L~~~GV-------------------~v~l~~~Vt~v~~~~----v~~~---~g~--~-~I~~~tvvWaaGv~  261 (405)
T COG1252         211 LSKYAERALEKLGV-------------------EVLLGTPVTEVTPDG----VTLK---DGE--E-EIPADTVVWAAGVR  261 (405)
T ss_pred             HHHHHHHHHHHCCC-------------------EEEcCCceEEECCCc----EEEc---cCC--e-eEecCEEEEcCCCc
Confidence            33445566778887                   899999999998753    4443   342  1 69999999999975

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=96.03  E-value=0.47  Score=50.58  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~   78 (572)
                      .++=|||+|+|+|++|..|-|-    |-++.|+|+.+.+
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~   41 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP   41 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence            4678999999999999999876    5689999998753

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=96.01  E-value=0.15  Score=56.10  Aligned_cols=74  Identities=14%  Similarity=0.214  Sum_probs=54.4

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~v  229 (572)
                      .++-..|...|.+.+.+.|+                   +++.+++|++++.+++.+. |++.+..+|  +..+++|++|
T Consensus       124 ~vdp~~l~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~~~~~g--~~~~i~a~~V  182 (516)
T TIGR03377       124 TVDPFRLVAANVLDAQEHGA-------------------RIFTYTKVTGLIREGGRVTGVKVEDHKTG--EEERIEAQVV  182 (516)
T ss_pred             EECHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEECCEEEEEEEEEcCCC--cEEEEEcCEE
Confidence            45666777788888888887                   8899999999988777654 455422223  3457999999


Q ss_pred             EeecCCChh-hhhhcCC
Q 008258          230 IGTDGAGST-VRKLVGI  245 (572)
Q Consensus       230 VgADG~~S~-VR~~lg~  245 (572)
                      |.|-|++|. +.+.+|.
T Consensus       183 VnAaG~wa~~l~~~~g~  199 (516)
T TIGR03377       183 INAAGIWAGRIAEYAGL  199 (516)
T ss_pred             EECCCcchHHHHHhcCC
Confidence            999999886 4555554

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.95  E-value=0.056  Score=58.27  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -+|+|||||.+|+=+|..|.+.|.+|+|++++.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            479999999999999999999999999998874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.90  E-value=0.062  Score=59.56  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            5799999999999999999999999999998753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.84  E-value=0.0084  Score=67.99  Aligned_cols=36  Identities=33%  Similarity=0.498  Sum_probs=33.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -..|.|||.||+||++|-.|-|.|+.|+|+||...+
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence            358999999999999999999999999999998765

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=95.53  E-value=0.51  Score=48.34  Aligned_cols=62  Identities=26%  Similarity=0.313  Sum_probs=47.7

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      .++-..|...|.+.+.+.|+                   +++.+++|++++.++++++. +. .++|     +++||.||
T Consensus       133 ~v~p~~l~~~l~~~~~~~g~-------------------~~~~~~~v~~i~~~~~~~~~-v~-~~~g-----~~~a~~vV  186 (337)
T TIGR02352       133 HVDPRALLKALEKALEKLGV-------------------EIIEHTEVQHIEIRGEKVTA-IV-TPSG-----DVQADQVV  186 (337)
T ss_pred             eEChHHHHHHHHHHHHHcCC-------------------EEEccceEEEEEeeCCEEEE-EE-cCCC-----EEECCEEE
Confidence            44556788888899988887                   88999999999987776542 22 1233     68999999


Q ss_pred             eecCCChh
Q 008258          231 GTDGAGST  238 (572)
Q Consensus       231 gADG~~S~  238 (572)
                      .|.|+.|.
T Consensus       187 ~a~G~~~~  194 (337)
T TIGR02352       187 LAAGAWAG  194 (337)
T ss_pred             EcCChhhh
Confidence            99999875

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK12831 putative oxidoreductase; Provisional

Probab=95.45  E-value=0.11  Score=56.29  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=30.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            489999999999999999999999999998764

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=95.40  E-value=0.0041  Score=57.87  Aligned_cols=36  Identities=33%  Similarity=0.500  Sum_probs=31.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      ..||+|||||-+||++|+..++.  .++|.|||..-.|
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP  113 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP  113 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence            46999999999999999999966  6899999986554

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=95.39  E-value=0.15  Score=55.15  Aligned_cols=33  Identities=15%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      -+|+|||||.+|+-+|..|++.|. +|++++++.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            489999999999999999999998 799998754

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.31  E-value=0.044  Score=60.36  Aligned_cols=34  Identities=24%  Similarity=0.436  Sum_probs=29.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.-+|||||.-||=+|..|.+.|.++.|++-.+.
T Consensus       146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~  179 (793)
T COG1251         146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT  179 (793)
T ss_pred             CCcEEEccchhhhHHHHHHHhCCCceEEEeecch
Confidence            3479999999999999999999999999975443

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.11  E-value=0.2  Score=52.35  Aligned_cols=42  Identities=19%  Similarity=0.112  Sum_probs=29.5

Q ss_pred             CcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC
Q 008258          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI  400 (572)
Q Consensus       359 grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~  400 (572)
                      .+|+.+||++....+....=...|++.+..+|..|.+.++|.
T Consensus       272 ~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~  313 (364)
T TIGR03169       272 PHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQ  313 (364)
T ss_pred             CCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCC
Confidence            689999999975432222223468888888888888877664

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=95.03  E-value=1.8  Score=45.69  Aligned_cols=44  Identities=16%  Similarity=0.272  Sum_probs=33.7

Q ss_pred             cceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       188 ~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +.+|+++++|++|+.+++++++++.  .+|.    ++.||.||.|--...
T Consensus       211 g~~i~~~~~V~~i~~~~~~~~~~~~--~~g~----~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       211 GGEVRLGTRVRSIEANAGGIRALVL--SGGE----TLPADAVVLAVPPRH  254 (419)
T ss_pred             CCEEEcCCeeeEEEEcCCcceEEEe--cCCc----cccCCEEEEcCCHHH
Confidence            4589999999999998888776654  1332    578999999876543

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.02  E-value=0.025  Score=51.55  Aligned_cols=32  Identities=25%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|.|+|||..|.++|..|+++|.+|.++.+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999999865

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=94.95  E-value=0.025  Score=61.55  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=35.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~   78 (572)
                      ..++|.+|||||-||+.+|.-|++. .++|+|+|+...+
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            5679999999999999999999997 7999999998776

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.74  E-value=0.039  Score=56.47  Aligned_cols=35  Identities=20%  Similarity=0.424  Sum_probs=31.5

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ...+|+|||+|-.|.++|..|++.|.+|+++.|.+
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            34579999999999999999999999999998853

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.72  E-value=0.033  Score=60.22  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=31.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .|+|||+|++|+++|..|++.|++|.++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999988664

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=94.70  E-value=0.036  Score=58.81  Aligned_cols=38  Identities=24%  Similarity=0.447  Sum_probs=30.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++||+|+|-|..-+.+|.+|++.|.+|+.+||++--
T Consensus         2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yY   39 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYY   39 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred             CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCc
Confidence            56799999999999999999999999999999999765

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=94.68  E-value=0.31  Score=52.94  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=26.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~   75 (572)
                      -+|+|||||.+|+-+|..+.+.|. +|++++..
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~  314 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM  314 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence            479999999999999998888886 57765543

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=0.98  Score=45.50  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=31.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .++|.+|||||-+||++|-..+..|-+|.++|--
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV   51 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV   51 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence            3599999999999999999999999999999853

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=94.63  E-value=0.28  Score=55.45  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=29.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      -+|+|||||.+|+-+|..|.+.|. +|+|++++.
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            479999999999999999999997 499998764

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.55  E-value=0.033  Score=52.00  Aligned_cols=33  Identities=21%  Similarity=0.541  Sum_probs=28.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||||.-|...|..++++|++|+++|..+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            389999999999999999999999999998654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.53  E-value=0.041  Score=53.38  Aligned_cols=57  Identities=18%  Similarity=0.309  Sum_probs=42.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-----C--CeeeeChhHHHHHHhhcchH
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-----P--QAHFINNRYALVFRKLDGLA  102 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~-----~--~a~~l~~rt~e~l~~l~Gl~  102 (572)
                      +++|||+|..|.++|-.|.+.|.+|+++|+.+.....     .  .++..+..-.++|+++ |+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a-gi~   65 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA-GID   65 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc-CCC
Confidence            6999999999999999999999999999999765211     1  2233334445666666 553

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=94.42  E-value=0.39  Score=55.40  Aligned_cols=33  Identities=18%  Similarity=0.348  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      -+|+|||||.+|+-+|..|.+.|.+ |+|+++++
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4799999999999999999999998 99998764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.40  E-value=0.042  Score=59.84  Aligned_cols=33  Identities=24%  Similarity=0.499  Sum_probs=30.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -+|+|||+|++|+.+|..|+++|.+|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            369999999999999999999999999999765

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=94.36  E-value=0.37  Score=57.22  Aligned_cols=33  Identities=9%  Similarity=0.173  Sum_probs=29.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      -+|+|||+|+.|+-+|..|++.|.+ |+|+|..+
T Consensus       318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~  351 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA  351 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence            4799999999999999999999965 78888653

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=94.19  E-value=0.97  Score=47.83  Aligned_cols=65  Identities=14%  Similarity=0.238  Sum_probs=50.2

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      +++-.+|.+.|.+.+++.|+                   ++..+++|++++.+++.++....  +++.  +.++++|.+|
T Consensus       259 Sv~G~RL~~aL~~~~~~~Gg-------------------~il~g~~V~~i~~~~~~v~~V~t--~~g~--~~~l~AD~vV  315 (419)
T TIGR03378       259 SLLGIRLEEALKHRFEQLGG-------------------VMLPGDRVLRAEFEGNRVTRIHT--RNHR--DIPLRADHFV  315 (419)
T ss_pred             CCcHHHHHHHHHHHHHHCCC-------------------EEEECcEEEEEEeeCCeEEEEEe--cCCc--cceEECCEEE
Confidence            45566888889999999987                   88889999999888887765442  1321  2368999999


Q ss_pred             eecCCC-hh
Q 008258          231 GTDGAG-ST  238 (572)
Q Consensus       231 gADG~~-S~  238 (572)
                      -|.|+. |.
T Consensus       316 LAaGaw~S~  324 (419)
T TIGR03378       316 LASGSFFSN  324 (419)
T ss_pred             EccCCCcCH
Confidence            999998 64

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.07  E-value=0.038  Score=51.84  Aligned_cols=33  Identities=24%  Similarity=0.425  Sum_probs=27.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||.|-+||.+|..|++.|++|+.+|.++.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            699999999999999999999999999998754

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.96  E-value=0.071  Score=47.99  Aligned_cols=31  Identities=26%  Similarity=0.599  Sum_probs=29.2

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        46 VlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      |+|+|+|-.|+..|..|++.|.+|.++.|.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999998865

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.57  E-value=0.09  Score=56.70  Aligned_cols=34  Identities=41%  Similarity=0.605  Sum_probs=31.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .-+|+|+|+|.+|+.+|..|++.|.+|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3579999999999999999999999999999865

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=93.56  E-value=0.53  Score=47.04  Aligned_cols=39  Identities=21%  Similarity=0.349  Sum_probs=31.8

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhC-C-CCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKL-G-IKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~-G-i~v~viEr~~~~   78 (572)
                      ...++.|+|||||-+|++.|..+.+. | -+|.|+|-...-
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H   76 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH   76 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence            35678999999999999999999876 4 368899866543

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=93.56  E-value=0.21  Score=52.24  Aligned_cols=56  Identities=16%  Similarity=0.258  Sum_probs=42.3

Q ss_pred             hhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecC
Q 008258          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (572)
Q Consensus       155 ~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG  234 (572)
                      ..+...|...+++.|+                   +|+++++|.++  ++++..+.+.   ++.   .+++||.||-|.|
T Consensus        86 ~sVv~~L~~~l~~~gV-------------------~i~~~~~V~~i--~~~~~~v~~~---~~~---~~~~a~~vIlAtG  138 (376)
T TIGR03862        86 APLLRAWLKRLAEQGV-------------------QFHTRHRWIGW--QGGTLRFETP---DGQ---STIEADAVVLALG  138 (376)
T ss_pred             HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEE--eCCcEEEEEC---CCc---eEEecCEEEEcCC
Confidence            4677789999999887                   89999999999  2334545443   221   2589999999999


Q ss_pred             CCh
Q 008258          235 AGS  237 (572)
Q Consensus       235 ~~S  237 (572)
                      ..|
T Consensus       139 G~s  141 (376)
T TIGR03862       139 GAS  141 (376)
T ss_pred             Ccc
Confidence            877

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=93.44  E-value=0.7  Score=48.73  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=32.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...|++||+|-.|+-+|..|.-.+.+|++|++.+.+
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~  248 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL  248 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc
Confidence            457999999999999999999999999999987665

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=93.40  E-value=1.2  Score=46.72  Aligned_cols=44  Identities=16%  Similarity=0.272  Sum_probs=34.9

Q ss_pred             ceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          189 REILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       189 ~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      .+|+++++|++|+.++++|++++.   +|+    +++||.||.|-......
T Consensus       224 ~~i~l~~~V~~I~~~~~~v~v~~~---~g~----~~~ad~VI~a~p~~~l~  267 (450)
T PF01593_consen  224 GEIRLNTPVTRIEREDGGVTVTTE---DGE----TIEADAVISAVPPSVLK  267 (450)
T ss_dssp             GGEESSEEEEEEEEESSEEEEEET---TSS----EEEESEEEE-S-HHHHH
T ss_pred             ceeecCCcceeccccccccccccc---cce----EEecceeeecCchhhhh
Confidence            489999999999999999988876   554    78999999988865433

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.39  E-value=1.7  Score=48.47  Aligned_cols=64  Identities=14%  Similarity=0.111  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeC-CeEEEE-EEeccCCceeeEEEEecEEEee
Q 008258          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVI-ASFLKEGKCTERNIQCNILIGT  232 (572)
Q Consensus       155 ~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~-~~v~v~-~~~~~~g~~~~~~i~ad~vVgA  232 (572)
                      ..+.+.|.+.+.+.|+                   +++.++.++++..++ +.|.-. .....+|  ..+.+.|+-||-|
T Consensus       126 ~~i~~~L~~~~~~~gi-------------------~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g--~~~~i~AkaVVLA  184 (570)
T PRK05675        126 HALLHTLYQGNLKNGT-------------------TFLNEWYAVDLVKNQDGAVVGVIAICIETG--ETVYIKSKATVLA  184 (570)
T ss_pred             HHHHHHHHHHHhccCC-------------------EEEECcEEEEEEEcCCCeEEEEEEEEcCCC--cEEEEecCeEEEC
Confidence            3577788888877776                   888899999887653 333322 2222244  4567999999999


Q ss_pred             cCCChhh
Q 008258          233 DGAGSTV  239 (572)
Q Consensus       233 DG~~S~V  239 (572)
                      .|..+.+
T Consensus       185 TGG~~~~  191 (570)
T PRK05675        185 TGGAGRI  191 (570)
T ss_pred             CCCcccc
Confidence            9988754

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.30  E-value=0.085  Score=53.81  Aligned_cols=33  Identities=27%  Similarity=0.543  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||+|.-|..+|..|+++|++|+++|+.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999998864

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.22  E-value=0.11  Score=52.98  Aligned_cols=33  Identities=21%  Similarity=0.489  Sum_probs=30.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ++|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            469999999999999999999999999999864

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=93.10  E-value=0.086  Score=46.69  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=28.9

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        46 VlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ++|+|||+.+.++|..++..|++|+|+|-+++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~   33 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER   33 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc
Confidence            589999999999999999999999999988764

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.99  E-value=0.14  Score=48.79  Aligned_cols=32  Identities=38%  Similarity=0.525  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      -.|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            47999999999999999999999999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=92.96  E-value=0.35  Score=50.23  Aligned_cols=42  Identities=19%  Similarity=0.340  Sum_probs=28.6

Q ss_pred             ceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          189 REILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       189 ~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++++.++.|..++...  +.+...   +|+  ..+|.+-++|.|.|...
T Consensus       288 I~~~~~t~Vk~V~~~~--I~~~~~---~g~--~~~iPYG~lVWatG~~~  329 (491)
T KOG2495|consen  288 IDLDTGTMVKKVTEKT--IHAKTK---DGE--IEEIPYGLLVWATGNGP  329 (491)
T ss_pred             ceeecccEEEeecCcE--EEEEcC---CCc--eeeecceEEEecCCCCC
Confidence            3888888888887542  333322   453  35788999999999653

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.82  E-value=0.11  Score=52.39  Aligned_cols=34  Identities=26%  Similarity=0.473  Sum_probs=31.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .|.|||+|.-|...|..|++.|++|+++|+.++.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            6999999999999999999999999999988654

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.69  E-value=0.16  Score=46.29  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=28.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEc
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLE   73 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viE   73 (572)
                      .-.|+|||||.+|+.-|..|.+.|.+|+||.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            3579999999999999999999999999995

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=92.56  E-value=0.18  Score=47.92  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=31.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      +..|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV   55 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            4689999999999999999999999 599999773

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.53  E-value=0.13  Score=52.15  Aligned_cols=32  Identities=22%  Similarity=0.494  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|+|||+|-.|.++|..|++.|.+|++++|++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            59999999999999999999999999999854

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=92.49  E-value=0.15  Score=51.83  Aligned_cols=30  Identities=30%  Similarity=0.429  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      +|+|+|+|..|.++|..|++.|.+|.+++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            599999999999999999999999999987

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.46  E-value=0.14  Score=51.72  Aligned_cols=33  Identities=18%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            699999999999999999999999999997654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.41  E-value=0.15  Score=51.48  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998754

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.39  E-value=0.14  Score=43.62  Aligned_cols=32  Identities=28%  Similarity=0.540  Sum_probs=28.9

Q ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        46 VlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      |+|||.|..|..++..|.+.+++|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            79999999999999999998889999999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.22  E-value=0.13  Score=55.71  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=31.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .-+|+|+|+|++|+.++..++..|.+|.++|.++.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45899999999999999999999999999998754

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.13  E-value=0.16  Score=53.23  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=31.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..+|+|||+|.+|+.+|..|.+.|.+|.++|+++
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3569999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.05  E-value=0.16  Score=51.26  Aligned_cols=33  Identities=18%  Similarity=0.470  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            599999999999999999999999999998765

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.99  E-value=0.16  Score=53.51  Aligned_cols=34  Identities=24%  Similarity=0.244  Sum_probs=31.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|+|+.|+.+|..++..|.+|+++|+.+.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4799999999999999999999999999998653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.92  E-value=0.16  Score=51.29  Aligned_cols=33  Identities=15%  Similarity=0.434  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            599999999999999999999999999998754

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.87  E-value=0.19  Score=51.23  Aligned_cols=33  Identities=39%  Similarity=0.477  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      +|.|||+|.+|+++|+.|++.|+  .+.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            59999999999999999999994  7999998754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=91.76  E-value=0.12  Score=43.34  Aligned_cols=34  Identities=35%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .-.|+|||||++|..-+..|.+.|-+|+|+.+..
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            4579999999999999999999999999998653

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=91.71  E-value=0.26  Score=50.39  Aligned_cols=37  Identities=30%  Similarity=0.477  Sum_probs=32.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      ....+|.|||+|-+|.++|+.|+..|+  +++|+|.+..
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            445689999999999999999999998  7999998654

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.66  E-value=0.2  Score=44.28  Aligned_cols=34  Identities=32%  Similarity=0.519  Sum_probs=30.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      +..|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            3579999999999999999999999 599999764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=91.64  E-value=0.25  Score=47.04  Aligned_cols=32  Identities=34%  Similarity=0.376  Sum_probs=29.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      .-.|+|||||-+|...|..|.+.|.+|+|+++
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            35899999999999999999999999999975

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.64  E-value=0.19  Score=50.57  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=31.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|.|||+|..|...|..|+++|++|+++|+++..
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~   38 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAA   38 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHH
Confidence            5999999999999999999999999999987653

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.58  E-value=0.25  Score=50.48  Aligned_cols=33  Identities=12%  Similarity=0.190  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||+|.-|...|..++.+|++|+++|+.+.
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            599999999999999999999999999998764

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=91.58  E-value=0.23  Score=45.71  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ...|+|+|+|.+|..+|..|...|.+++++|..+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            3679999999999999999999999999999764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=91.56  E-value=0.27  Score=48.82  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=31.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .+..|+|||+|-+|..+|..|++.|+ +++|+|.+.-
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            34689999999999999999999996 6999997643

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=91.29  E-value=0.27  Score=50.69  Aligned_cols=36  Identities=33%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      -.+..|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            334689999999999999999999999 799999875

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.27  E-value=1.3  Score=50.33  Aligned_cols=34  Identities=12%  Similarity=0.239  Sum_probs=29.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      -+|+|||||.+|+-+|..+.+.|. +|+++.+++.
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~  503 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE  503 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence            479999999999999999889997 5888887643

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=91.26  E-value=0.32  Score=42.99  Aligned_cols=34  Identities=26%  Similarity=0.463  Sum_probs=30.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      .-.|+|||+|-+|-+++..|+..|.+ +.|+.|..
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            35799999999999999999999998 99998753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK04148 hypothetical protein; Provisional

Probab=91.14  E-value=0.2  Score=44.06  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 999999999999999999998765

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=91.11  E-value=0.34  Score=46.13  Aligned_cols=36  Identities=25%  Similarity=0.448  Sum_probs=31.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      -.+..|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            345789999999999999999999998 799999764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.07  E-value=0.24  Score=51.03  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=31.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|.|||.|-+||+.|..|++.|++|+.+|..+..
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~K   35 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESK   35 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence            6899999999999999999999999999988653

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=91.05  E-value=0.3  Score=49.70  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .+|.|||+|-.|+..|..|+.+|+ +|+++|....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            369999999999999999999887 8999998433

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=90.99  E-value=0.74  Score=47.56  Aligned_cols=50  Identities=14%  Similarity=0.283  Sum_probs=34.7

Q ss_pred             eEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCC--ChhhhhhcCCc
Q 008258          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA--GSTVRKLVGID  246 (572)
Q Consensus       190 ~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~--~S~VR~~lg~~  246 (572)
                      +|+-+..|.++......+.+.+.   +|.    +++.|+||.|-|.  +|-+.+.-|+.
T Consensus       409 ~V~pna~v~sv~~~~~nl~lkL~---dG~----~l~tD~vVvavG~ePN~ela~~sgLe  460 (659)
T KOG1346|consen  409 DVRPNAKVESVRKCCKNLVLKLS---DGS----ELRTDLVVVAVGEEPNSELAEASGLE  460 (659)
T ss_pred             eeccchhhhhhhhhccceEEEec---CCC----eeeeeeEEEEecCCCchhhcccccce
Confidence            56666666666666666767776   775    7899999999994  56555544443

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=90.94  E-value=2  Score=46.59  Aligned_cols=34  Identities=15%  Similarity=0.262  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      -.|+|||+|.+|+-+|..+.+.|. +|+|+++++.
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            479999999999999999999996 6999988654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=90.64  E-value=0.34  Score=43.18  Aligned_cols=34  Identities=35%  Similarity=0.664  Sum_probs=29.8

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      ++|.|||+ |.+|.++|+.|...++  +++++|....
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            36999999 9999999999999975  5999998754

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=90.59  E-value=5.6  Score=42.42  Aligned_cols=191  Identities=15%  Similarity=0.174  Sum_probs=97.4

Q ss_pred             eeccCccccCCCCCCCCCCcccccCC--CCccCCEEEECCCHHHH------HHHHHHH--hCCCCEEEEcCC-CCCCCCC
Q 008258           14 SRIKTFPYPYGYTQCRALSDSKTIVS--NEAVVPVLIVGAGPVGL------VLSILLT--KLGIKCSVLEKN-KAFSTHP   82 (572)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dVlIVGaGpaGL------~~A~~La--~~Gi~v~viEr~-~~~~~~~   82 (572)
                      .++..+++|++...+.-++|.+|...  ....-+++|||  +-|+      .+|-.|.  +.|+++...+=. +......
T Consensus       107 ~~n~~~~T~~Gt~kpt~l~p~~~~~~~~~~~~~~~~vvg--~~g~~dF~~~~~a~~L~~~~~~~~~~~~~i~~p~~~~~~  184 (422)
T PRK05329        107 ERNHLRPTPLGTLRPTWLSPPSVPAGVALLDAKRILVVG--IEGLRDFQPHLAAANLHAQFQGLEVRTAELELPGLDRDN  184 (422)
T ss_pred             CCceeeeccccccchhhhCchhhhcccccCccCcEEEEE--CccccCCCHHHHHHHHhhccCCCceEEEEEECCCccccC
Confidence            36666888888887777888887543  23345799997  4333      2344443  457666654422 2211011


Q ss_pred             CeeeeChhHHHHHHhh---cchHHHHHhcCCCcccccceeeeeCCCCCeee-----eec-CCCccccccccCCccccccC
Q 008258           83 QAHFINNRYALVFRKL---DGLAEEIERSQPPVDLWRKFIYCTSVTGPILG-----SVD-HMQPQDFEKVVSPVSVAHFS  153 (572)
Q Consensus        83 ~a~~l~~rt~e~l~~l---~Gl~~~l~~~~~~~~~~~~~~~~~~~~G~~~~-----~~~-~~~~~~~~~~~sp~~~~~l~  153 (572)
                      ....-..+--++|+.-   .-|.+++.....+.+.    +.....-|-+..     .+. ..+. ...  ..|.....++
T Consensus       185 ~~e~~~~~iAr~ld~~~~~~~l~~~l~~~~~~~~~----V~~PavIGle~a~~v~~~L~~~LG~-~V~--~vp~~ppslp  257 (422)
T PRK05329        185 PREFRAVNIARLLDDPENREALADALKPLAGDAEA----VLLPAVLGLDDDAAVLAELEEALGC-PVF--ELPTLPPSVP  257 (422)
T ss_pred             cccccHHHHHHHhCChhHHHHHHHHHHHhcCCCCE----EEECceecCCChHHHHHHHHHHHCC-CEE--EeCCCCCCCc
Confidence            1111111122223221   0244555544333221    111111111111     000 0000 000  0011112233


Q ss_pred             hhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeec
Q 008258          154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTD  233 (572)
Q Consensus       154 q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgAD  233 (572)
                      -.++.+.|.+.+.+.|+                   +++.+++|++++.+++++++...  .++  .+..+++|.||-|.
T Consensus       258 G~rL~~aL~~~l~~~Gv-------------------~I~~g~~V~~v~~~~~~V~~v~~--~~g--~~~~i~AD~VVLAt  314 (422)
T PRK05329        258 GLRLQNALRRAFERLGG-------------------RIMPGDEVLGAEFEGGRVTAVWT--RNH--GDIPLRARHFVLAT  314 (422)
T ss_pred             hHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEeCCEEEEEEe--eCC--ceEEEECCEEEEeC
Confidence            44788888888888887                   89999999999987777665443  233  23478999999999


Q ss_pred             CCC
Q 008258          234 GAG  236 (572)
Q Consensus       234 G~~  236 (572)
                      |..
T Consensus       315 Grf  317 (422)
T PRK05329        315 GSF  317 (422)
T ss_pred             CCc
Confidence            964

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.52  E-value=0.27  Score=50.59  Aligned_cols=32  Identities=28%  Similarity=0.513  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|.|||+|..|.++|..|++.|.+|.++.|++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            59999999999999999999999999999864

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.51  E-value=0.36  Score=49.86  Aligned_cols=35  Identities=29%  Similarity=0.580  Sum_probs=31.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      .+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            35689999999999999999999999 799999864

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=90.48  E-value=0.33  Score=50.19  Aligned_cols=31  Identities=23%  Similarity=0.468  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      +|.|||+|-.|...|..|++.|++|.+++|.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            6999999999999999999999999999974

>TIGR02731 phytoene_desat phytoene desaturase

Probab=90.48  E-value=26  Score=37.62  Aligned_cols=50  Identities=6%  Similarity=0.207  Sum_probs=33.5

Q ss_pred             eEEeccEEEEEeeeCCe-E-EEEEEeccCCc-eeeEEEEecEEEeecCCChhhhhhc
Q 008258          190 EILMGHECVSVSATDQC-I-NVIASFLKEGK-CTERNIQCNILIGTDGAGSTVRKLV  243 (572)
Q Consensus       190 ~i~~g~~v~~v~~~~~~-v-~v~~~~~~~g~-~~~~~i~ad~vVgADG~~S~VR~~l  243 (572)
                      +|+++++|++|++++++ + .+++.   +++ ++.+++.||.||-|-..+. +++.+
T Consensus       229 ~i~l~~~V~~I~~~~~~~v~~v~~~---~~~~~~~~~~~a~~VI~a~p~~~-~~~lL  281 (453)
T TIGR02731       229 EVRLNSRLKEIVLNEDGSVKHFVLA---DGEGQRRFEVTADAYVSAMPVDI-FKLLL  281 (453)
T ss_pred             EEeCCCeeEEEEECCCCCEEEEEEe---cCCCCceeEEECCEEEEcCCHHH-HHhhC
Confidence            89999999999875554 3 24443   222 1223688999999987754 55555

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=90.37  E-value=0.26  Score=46.46  Aligned_cols=34  Identities=21%  Similarity=0.376  Sum_probs=28.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .-+|+|||+|.++.-+|..|++.|-+|.++=|.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            3679999999999999999999999999998875

...

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=90.30  E-value=0.41  Score=46.99  Aligned_cols=37  Identities=27%  Similarity=0.352  Sum_probs=33.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ....++|+|||+.+..+|..++..|++|+|+|-+++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~  135 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAE  135 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccc
Confidence            3468999999999999999999999999999987663

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=90.27  E-value=0.28  Score=52.29  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            4699999999999999999999999999998765

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=90.11  E-value=0.41  Score=44.04  Aligned_cols=34  Identities=29%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             ccCCEEEECCCH-HHHHHHHHHHhCCCCEEEEcCC
Q 008258           42 AVVPVLIVGAGP-VGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGp-aGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ...+|+|||+|- +|..+|..|.+.|.+|.++.|.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            346899999996 7999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=90.03  E-value=0.48  Score=48.53  Aligned_cols=35  Identities=17%  Similarity=0.392  Sum_probs=31.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~   78 (572)
                      .+|.|||||-.|.++|..|+..|+ +++|+|..+..
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            589999999999999999999996 89999987764

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.98  E-value=0.39  Score=49.01  Aligned_cols=33  Identities=21%  Similarity=0.512  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            699999999999999999999999999997653

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=89.95  E-value=0.48  Score=43.92  Aligned_cols=32  Identities=28%  Similarity=0.496  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      .|+|||+|-.|...|..|++.|+. ++|+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999999999996 99999864

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=89.89  E-value=0.51  Score=45.29  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=31.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      .+..|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            356899999999999999999999996 99999764

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=89.88  E-value=0.2  Score=43.79  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=28.3

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ....+|-|||+|-+|-++|.+|.+.|+.|.-+..+
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr   42 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSR   42 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            44578999999999999999999999998877644

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.84  E-value=0.45  Score=51.21  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|+|+|+|.+|+++|..|+++|.+|+++|..+.
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4699999999999999999999999999997654

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=89.76  E-value=1.6  Score=45.49  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=35.7

Q ss_pred             eEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       190 ~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      .-++..+++.++.+...|.+..... ++...+..+.+||||-|-|+...
T Consensus       124 ~~y~eAec~~iDp~~k~V~~~s~t~-~~~~~e~~i~YDyLViA~GA~~~  171 (491)
T KOG2495|consen  124 VKYLEAECTKIDPDNKKVHCRSLTA-DSSDKEFVIGYDYLVIAVGAEPN  171 (491)
T ss_pred             ceEEecccEeecccccEEEEeeecc-CCCcceeeecccEEEEeccCCCC
Confidence            3456778888888888877765533 33346678999999999999864

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=89.63  E-value=0.41  Score=49.76  Aligned_cols=33  Identities=36%  Similarity=0.672  Sum_probs=27.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~   77 (572)
                      .|+|+|+||.||+++..++..|.. |+++|+.+.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~  204 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE  204 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            599999999999998888888965 666677654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=89.62  E-value=2.8  Score=49.44  Aligned_cols=34  Identities=21%  Similarity=0.365  Sum_probs=29.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~-Gi-~v~viEr~~   76 (572)
                      .-+|+|||||.+|+=+|..+.+. |. +|+|++++.
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            35799999999999999998886 86 799999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.49  E-value=0.43  Score=49.10  Aligned_cols=33  Identities=24%  Similarity=0.475  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||+|.-|.+.|..|++.|++|++++|.+.
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~   38 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRPE   38 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            699999999999999999999999999998643

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.45  E-value=0.5  Score=48.14  Aligned_cols=35  Identities=26%  Similarity=0.354  Sum_probs=31.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..+|.|||+|-.|.++|..|++.|++|.+++|.+.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            34699999999999999999999999999998754

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=89.44  E-value=0.32  Score=51.78  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=31.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|.|||.|-.|+.+|..|++.|++|+++|+++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~   35 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEK   35 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHH
Confidence            5999999999999999999999999999987653

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=89.38  E-value=0.3  Score=51.48  Aligned_cols=26  Identities=31%  Similarity=0.429  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           53 PVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        53 paGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|||++|..|++.|++|+|+|+...+
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~   26 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRV   26 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSS
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCC
Confidence            58999999999999999999999765

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=89.34  E-value=0.43  Score=50.25  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=31.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .-.|+|+|.|+.|..+|..|+..|.+|+++|+.+.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            34799999999999999999999999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK06223 malate dehydrogenase; Reviewed

Probab=89.33  E-value=0.47  Score=48.34  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .+|.|||||..|.++|..|++.|+ +++++|..++
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            379999999999999999999876 9999999654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=89.29  E-value=0.37  Score=52.14  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=31.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...|+|+|+|++|+.++..+...|.+|+++|+++.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998754

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=89.27  E-value=0.6  Score=41.59  Aligned_cols=33  Identities=27%  Similarity=0.567  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .|+|||+|-.|...|..|++.|+ +++|+|...-
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v   34 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV   34 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence            48999999999999999999999 5999997643

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.16  E-value=0.54  Score=47.53  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=32.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ..++|.+|||||-.|+++|...+.+|.++.|+|..
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~   52 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP   52 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence            44799999999999999999999999999999975

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=89.10  E-value=0.6  Score=45.71  Aligned_cols=35  Identities=31%  Similarity=0.460  Sum_probs=30.6

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      ....|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            356899999999999999999999985 77888764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.89  E-value=0.44  Score=51.92  Aligned_cols=32  Identities=34%  Similarity=0.622  Sum_probs=29.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      -.|+|+|.|++|++++..|.+.|.+|++.|+.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            36999999999999999999999999999965

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.73  E-value=0.57  Score=50.40  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|+|.+|.++|..|++.|.+|.+.|+...
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~   39 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF   39 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence            3589999999999999999999999999997653

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=88.67  E-value=0.41  Score=48.01  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|.|||.|..|.++|..|++.|++|.++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999854

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=88.65  E-value=0.54  Score=47.57  Aligned_cols=34  Identities=29%  Similarity=0.428  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .|.|||+|.-|...|..|++.|++|.++|+.+..
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~   39 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAA   39 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            5999999999999999999999999999987643

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=88.50  E-value=0.57  Score=47.15  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      .+|+|+|+|-+|.++|..|++.|+ +++|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            479999999999999999999998 699999874

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=88.43  E-value=0.43  Score=53.00  Aligned_cols=35  Identities=34%  Similarity=0.469  Sum_probs=32.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +-+|+|||+|+.|-.+|..|.++|++++++|++++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            45799999999999999999999999999999865

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=88.37  E-value=0.49  Score=48.43  Aligned_cols=33  Identities=24%  Similarity=0.526  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||+|..|...|..|++.|++|.+++|.+.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~   35 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPE   35 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            699999999999999999999999999998643

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=88.32  E-value=0.57  Score=47.74  Aligned_cols=34  Identities=32%  Similarity=0.518  Sum_probs=30.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~   78 (572)
                      .|+|||+|-+|.++|..|+..|+  ++.++|+....
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~   37 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK   37 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence            58999999999999999999994  69999997653

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=88.31  E-value=0.51  Score=47.80  Aligned_cols=35  Identities=31%  Similarity=0.465  Sum_probs=31.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...|+|+|.|.+|.++|..|++.|.+|.+++|++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45899999999999999999999999999998743

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=88.26  E-value=0.73  Score=46.98  Aligned_cols=37  Identities=27%  Similarity=0.374  Sum_probs=34.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      .+||+|+|-|+.-+.++.+|+..|-+|+.|||++.-.
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG   42 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG   42 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence            6999999999999999999999999999999998754

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=88.15  E-value=0.74  Score=45.25  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=31.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      .+.+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            35689999999999999999999998 588998763

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=88.12  E-value=0.61  Score=49.46  Aligned_cols=34  Identities=29%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|.|+.|..+|..|+..|.+|+++|+.+.
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            4699999999999999999999999999998764

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=88.09  E-value=0.7  Score=47.12  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=30.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      +.+|.|||+|-+|.++|+.|+..|+  +++|+|....
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~   39 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED   39 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            4589999999999999999999886  5899998754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=88.05  E-value=0.7  Score=45.20  Aligned_cols=36  Identities=28%  Similarity=0.441  Sum_probs=30.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCC-----------CCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLG-----------IKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~G-----------i~v~viEr~~   76 (572)
                      ..+.+|+|||+|-.|..++-.|++.|           .+++|+|.+.
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            34578999999999999999999974           2788888654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.93  E-value=0.54  Score=50.64  Aligned_cols=33  Identities=30%  Similarity=0.517  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            699999999999999999999999999999765

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=87.71  E-value=2.5  Score=44.71  Aligned_cols=37  Identities=19%  Similarity=0.462  Sum_probs=29.6

Q ss_pred             eEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCC
Q 008258          190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (572)
Q Consensus       190 ~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~  235 (572)
                      +++++++++.++-.+..  +.+.   +|.    ++..+.+|-|.|.
T Consensus       143 e~~~~t~v~~~D~~~K~--l~~~---~Ge----~~kys~LilATGs  179 (478)
T KOG1336|consen  143 ELILGTSVVKADLASKT--LVLG---NGE----TLKYSKLIIATGS  179 (478)
T ss_pred             eEEEcceeEEeeccccE--EEeC---CCc----eeecceEEEeecC
Confidence            88999999999877655  3343   553    7899999999998

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=87.68  E-value=0.82  Score=44.43  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=30.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      +..|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            4689999999999999999999998 688998764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=87.46  E-value=0.9  Score=44.08  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=30.7

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      .+..|+|||+|..|...|..|++.|+ +++|+|.+.
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            35689999999999999999999998 588888664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=87.44  E-value=0.78  Score=44.46  Aligned_cols=34  Identities=32%  Similarity=0.533  Sum_probs=30.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIK---CSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~---v~viEr~~   76 (572)
                      +..|+|+|||-+|...|..|.+.|++   +.|++|..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            35799999999999999999999985   99999974

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK08328 hypothetical protein; Provisional

Probab=87.42  E-value=0.91  Score=44.17  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=30.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      +..|+|||+|-.|..+|..|++.|+. ++|+|...
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            46899999999999999999999985 78887654

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=87.35  E-value=0.65  Score=47.14  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=28.9

Q ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           46 VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        46 VlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      |.|||+|-.|..+|..|+..|+ +++++|..+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            6799999999999999999887 9999998743

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.28  E-value=0.69  Score=50.03  Aligned_cols=34  Identities=32%  Similarity=0.492  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|+|+|.|.+|.++|..|.+.|++|.+.|+.+.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            3699999999999999999999999999998754

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=87.26  E-value=0.66  Score=50.72  Aligned_cols=35  Identities=17%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -.|.|||+|.-|...|..|++.|++|+++|+.++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~   42 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA   42 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            35999999999999999999999999999988654

>PRK08223 hypothetical protein; Validated

Probab=87.11  E-value=0.9  Score=45.44  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=30.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      .+..|+|||+|-.|..+|..|++.|+. +.|+|.+.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            357899999999999999999999984 88888664

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=87.06  E-value=0.69  Score=44.59  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=29.0

Q ss_pred             CEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVG-aGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|.||| +|..|.++|..|++.|.+|.+++|.+
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            599997 79999999999999999999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=86.98  E-value=0.65  Score=48.95  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|.|||.|-.|+.+|..|+. |++|+++|+.+..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k   34 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR   34 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence            58999999999999999986 9999999998654

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=86.91  E-value=6.7  Score=39.86  Aligned_cols=36  Identities=19%  Similarity=0.477  Sum_probs=32.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      -+|+|||||.+..=-|+.|++.+-+|.++=|++.++
T Consensus       144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r  179 (305)
T COG0492         144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR  179 (305)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC
Confidence            399999999999999999999999999998887653

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=86.88  E-value=0.67  Score=50.61  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .|.|||+|.-|...|..|++.|++|+|+|+.+..
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~   39 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEA   39 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            5999999999999999999999999999986543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=86.84  E-value=4.9  Score=47.85  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=27.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~   75 (572)
                      -+|+|||||.+|+=+|..+.+.|.+ |+++.++
T Consensus       572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            5899999999999999999999986 6666654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=86.84  E-value=0.68  Score=50.03  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      +|.|||.|-+|+.+|..|+++  |++|+.+|.++..
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~   38 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR   38 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence            599999999999999999998  4789999987653

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=86.66  E-value=1.1  Score=46.98  Aligned_cols=40  Identities=18%  Similarity=0.079  Sum_probs=35.0

Q ss_pred             cCCCCccCCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           37 IVSNEAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        37 ~~~~~~~~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+..+.+|+|.|| |-.|..++..|.+.|++|+.++|..
T Consensus        15 ~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         15 PYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            345566778999999 9999999999999999999999864

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=86.60  E-value=0.93  Score=47.42  Aligned_cols=35  Identities=23%  Similarity=0.440  Sum_probs=31.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      .+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            35789999999999999999999998 688998764

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=86.40  E-value=0.84  Score=48.59  Aligned_cols=36  Identities=33%  Similarity=0.450  Sum_probs=33.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...|+|+|-|-+|+++|..|.+.|.+|++.|.++.+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            457999999999999999999999999999988766

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=86.17  E-value=1  Score=42.34  Aligned_cols=32  Identities=25%  Similarity=0.621  Sum_probs=29.3

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ..|+|+|| |.+|..+|..|++.|.+|.++.|+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            47999997 999999999999999999999875

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=85.93  E-value=0.69  Score=50.46  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=31.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .|.|||+|.-|...|..|++.|++|+++|+.++.
T Consensus         7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~   40 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA   40 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            5999999999999999999999999999988664

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=85.93  E-value=1  Score=45.75  Aligned_cols=34  Identities=24%  Similarity=0.485  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~   78 (572)
                      +|.|||+|-+|.++|+.|...|+  +++|+|.....
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~   36 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGV   36 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence            48999999999999999999887  59999986543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=85.89  E-value=1.2  Score=42.29  Aligned_cols=34  Identities=29%  Similarity=0.507  Sum_probs=30.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      +..|+|||+|-.|...|-.|++.|+. ++|+|.+.
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            57899999999999999999999996 88998764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PTZ00117 malate dehydrogenase; Provisional

Probab=85.87  E-value=1.1  Score=46.01  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~   78 (572)
                      ..+|.|||||-.|.++|..|+..| .+++|+|.++..
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~   41 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGV   41 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCcc
Confidence            358999999999999999999999 589999987654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=85.79  E-value=0.84  Score=46.46  Aligned_cols=32  Identities=34%  Similarity=0.648  Sum_probs=28.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .|+|+|+|-.|...|..|++.|.+|+++=|.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            69999999999999999999997777776654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=85.76  E-value=0.81  Score=51.26  Aligned_cols=35  Identities=34%  Similarity=0.502  Sum_probs=32.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +-.|+|+|.|..|-.+|..|.++|++++++|++++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~  434 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDIS  434 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHH
Confidence            45799999999999999999999999999998754

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=85.72  E-value=0.86  Score=46.40  Aligned_cols=33  Identities=21%  Similarity=0.422  Sum_probs=29.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      .+|.|||+|..|.++|..|++.|+  +|.++++.+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            469999999999999999999995  788998764

>PLN02494 adenosylhomocysteinase

Probab=85.68  E-value=1  Score=48.14  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|.|+.|..+|..|+..|.+|+++|+.+.
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4799999999999999999999999999998764

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=85.50  E-value=0.92  Score=41.20  Aligned_cols=33  Identities=30%  Similarity=0.466  Sum_probs=27.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -.|+|+|-|.+|-.+|..|+..|.+|.|.|.+|
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            369999999999999999999999999999876

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=85.38  E-value=1.3  Score=41.91  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=30.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      .+..|+|||+|..|...|..|++.|+. ++|+|.+.
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            356899999999999999999999996 88998664

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.24  E-value=0.96  Score=49.05  Aligned_cols=34  Identities=18%  Similarity=-0.069  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|.|-+|.++|.+|.+.|.+|++.|.++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            3699999999999999999999999999997654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=85.06  E-value=0.95  Score=45.60  Aligned_cols=33  Identities=21%  Similarity=0.448  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|+|+|..|.++|..|+..|.+|.+++|.+
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=84.95  E-value=0.96  Score=47.20  Aligned_cols=34  Identities=29%  Similarity=0.564  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~   77 (572)
                      .+|+|+|||-+|.++|.-|++.| .+|+|.+|...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            37999999999999999999999 89999999854

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=84.93  E-value=0.77  Score=52.47  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=31.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .|.|||||.-|.-.|..+++.|++|+++|..++.
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA  348 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            6999999999999999999999999999987653

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=84.84  E-value=0.71  Score=44.89  Aligned_cols=31  Identities=19%  Similarity=0.389  Sum_probs=25.4

Q ss_pred             EEEECCCHHHHHHHHHHHhC--CCCEEEEcCCC
Q 008258           46 VLIVGAGPVGLVLSILLTKL--GIKCSVLEKNK   76 (572)
Q Consensus        46 VlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~   76 (572)
                      .+|||||+||.++|-.|+++  .-+++++-..+
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass   34 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS   34 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence            58999999999999999987  45677775543

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=84.64  E-value=0.82  Score=52.20  Aligned_cols=34  Identities=18%  Similarity=0.201  Sum_probs=31.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .|.|||||.-|.-.|..+++.|++|+++|..++.
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS  348 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            6999999999999999999999999999988654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=84.50  E-value=1  Score=48.52  Aligned_cols=34  Identities=35%  Similarity=0.611  Sum_probs=31.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus       232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5699999999999999999999999999998865

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=84.49  E-value=1.4  Score=44.52  Aligned_cols=33  Identities=15%  Similarity=0.304  Sum_probs=29.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      ..|+|+|||-+|.++|..|++.|.+ |.|+.|..
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4699999999999999999999997 99999864

>PLN02976 amine oxidase

Probab=84.49  E-value=1.1e+02  Score=37.77  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008258          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK  398 (572)
Q Consensus       358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~  398 (572)
                      .+||+++|+|.+...|.+-.|   |++.+...|..|...+.
T Consensus      1150 ggRLFFAGEATS~~~pGTVHG---AIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976       1150 ENCLFFAGEATCKEHPDTVGG---AMMSGLREAVRIIDILN 1187 (1713)
T ss_pred             CCcEEEEehhhhCCCcchHHH---HHHHHHHHHHHHHHHHH
Confidence            367999999998877765555   78888888887777664

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=84.39  E-value=1  Score=50.69  Aligned_cols=35  Identities=31%  Similarity=0.518  Sum_probs=32.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +-+|+|+|.|..|-..|..|.+.|++++++|++++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~  434 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD  434 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence            45899999999999999999999999999999864

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=84.34  E-value=1.3  Score=46.54  Aligned_cols=35  Identities=23%  Similarity=0.487  Sum_probs=31.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      .+..|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~  169 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV  169 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            35689999999999999999999999 588998764

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=84.23  E-value=17  Score=37.96  Aligned_cols=49  Identities=12%  Similarity=0.074  Sum_probs=39.5

Q ss_pred             ccceEEeccEEEEEeeeCCe-EEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          187 QGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       187 ~~~~i~~g~~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +.+.++-++++++++..++| +.+++...  .+++.++++.|.||-|.|-+=
T Consensus       291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~--~~~~~~t~~~D~vIlATGY~~  340 (436)
T COG3486         291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHH--ETGELETVETDAVILATGYRR  340 (436)
T ss_pred             CCeeeccccceeeeecCCCceEEEEEeec--cCCCceEEEeeEEEEeccccc
Confidence            45688889999999998877 77777753  344677899999999999873

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.19  E-value=1.2  Score=48.46  Aligned_cols=31  Identities=35%  Similarity=0.586  Sum_probs=29.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .|+|+|.|.+|.++|.+|.+.|.+|.+.|+.
T Consensus        17 ~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         17 RVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            5999999999999999999999999999965

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=84.11  E-value=1.1  Score=45.09  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||.|..|..+|..|++.|++|.++++.+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~   33 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE   33 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            488999999999999999999999999998753

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=84.08  E-value=1.4  Score=46.21  Aligned_cols=32  Identities=38%  Similarity=0.693  Sum_probs=30.1

Q ss_pred             CCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           44 VPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVG-aGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ..|.||| .|.-|..+|..|+++|++|.++++.
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            5799999 8999999999999999999999985

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=84.06  E-value=1.5  Score=42.30  Aligned_cols=33  Identities=27%  Similarity=0.441  Sum_probs=29.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ...|+|||||.+++-=+..|.+.|-+|+||-..
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~   57 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK   57 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            457999999999999999999999999999643

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=84.00  E-value=1.3  Score=42.75  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=31.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      ...|+|||.|-+|..++-+|+|.|+ +.+|||...-
T Consensus        30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v   65 (263)
T COG1179          30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV   65 (263)
T ss_pred             hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence            3579999999999999999999998 5999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	572
3ihg_A	535	Crystal Structure Of A Ternary Complex Of Aklavinon		2e-29
2r0c_A	549	Structure Of The Substrate-Free Form Of The Rebecca		4e-27
4eip_A	549	Native And K252c Bound Rebc-10x Length = 549		1e-26
2qa2_A	499	Crystal Structure Of Cabe, An Aromatic Hydroxylase		7e-19
2qa1_A	500	Crystal Structure Of Pgae, An Aromatic Hydroxylase		2e-15
1pn0_A	665	Phenol Hydroxylase From Trichosporon Cutaneum Lengt		5e-15
1foh_A	664	Phenol Hydroxylase From Trichosporon Cutaneum Lengt		9e-14
3fmw_A	570	The Crystal Structure Of Mtmoiv, A Baeyer-Villiger		2e-13
2dkh_A	639	Crystal Structure Of 3-Hydroxybenzoate Hydroxylase		2e-12
4hb9_A	412	Crystal Structure Of A Putative Fad Containing Mono		9e-06

>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11 Hydroxylase With Fad And Aklavinone Length = 535

Iteration: 1
 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 175/398 (43%), Gaps = 50/398 (12%)
Query: 40  NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD 99
           N+  V VL+VGAG  GL  ++ L + G++  V+E+    S +P+A   N R   + R + 
Sbjct: 2   NDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLR-IG 60
Query: 100 GLAEEIERSQPPVDLWRKFI--YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYXX 157
           G+A+E+ R+         F+     SV G IL +V     + F+ +V+            
Sbjct: 61  GVADEVVRADDIRGTQGDFVIRLAESVRGEILRTVS----ESFDDMVAATEP-------- 108
Query: 158 XXXXXXXXXXXXXXICTSEGTEGLHNHLLQ----------GREILMGHECVSVSATDQCI 207
                          CT  G   L    L+          G  I  G   +S    D   
Sbjct: 109 ---------------CTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDA 153
Query: 208 NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLG 267
               +    G   E +++   L+G DG  S VR+ +GI   G   L  +V V F   DL 
Sbjct: 154 GAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIF-DADLS 212
Query: 268 DYLLNERPGM--LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKL 324
             +    PG    +++ + E  G     D  +    L V + P + +  EDF+P+ C +L
Sbjct: 213 GIM---EPGTTGWYYLHHPEFKGTFGPTDRPD-RHTLFVEYDPDEGERPEDFTPQRCVEL 268
Query: 325 IFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQ 384
           I   +       +++DI+ W M A +AE++     ++ LAGDA    PP GG   N  V 
Sbjct: 269 IGLALDAPEVKPELVDIQGWEMAARIAERWR--EGRVFLAGDAAKVTPPTGGMSGNAAVA 326
Query: 385 DAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTA 422
           D  +LAWK+A+VL+  A A +L+TYE ERK  AE   A
Sbjct: 327 DGFDLAWKLAAVLQGQAGAGLLDTYEDERKVAAELVVA 364

>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin Biosynthetic Enzyme Rebc Length = 549

Iteration: 1
 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 169/397 (42%), Gaps = 39/397 (9%)
Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI+G GPVG+ L++ L    +   V+E+     THP+   I  R   +FR+  G+A++I
Sbjct: 29  VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRW-GVAKQI 87
Query: 106 ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYXXXXXXXXXX 165
             +  P D      + T V G              E    P+  A               
Sbjct: 88  RTAGWPGDHPLDAAWVTRVGG-------------HEVYRIPLGTA-------DTRATPEH 127
Query: 166 XXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQ 225
                 IC       L    + G  +       S    D  +    + L+ G    R + 
Sbjct: 128 TPEPDAICPQHWLAPLLAEAV-GERLRTRSRLDSFEQRDDHVRATITDLRTGAT--RAVH 184
Query: 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTE 285
              L+  DGA S  RK +GID       Q   ++ F + +L   LL ER  + FF+  + 
Sbjct: 185 ARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPEL-RSLLGERAALFFFLMLSS 243
Query: 286 AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE--KLIFKLVGWELSDIDVIDIKP 343
           ++   +      G + L V        ++D S    +  +L+ + V ++ ++I+V+    
Sbjct: 244 SLRFPLRALDGRGLYRLTV-------GVDDASKSTMDSFELVRRAVAFD-TEIEVLSDSE 295
Query: 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPA 403
           W +   VA+ F     ++ L GDA H   P+GGFGMNTG+  A +L WK+A+ L+  A  
Sbjct: 296 WHLTHRVADSF--SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGP 353
Query: 404 SILNTYETERKPIAEFNTALSVQNFRAAM--EVPSAL 438
            +L TYE ER+P+A  +   +  N R  M  E+P  L
Sbjct: 354 GLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGL 390

>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x Length = 549

Iteration: 1
 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 170/402 (42%), Gaps = 49/402 (12%)
Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI+G GPVG+ L++ L    +   V++      THP+   I  R   +FR+  G+A++I
Sbjct: 29  VLILGGGPVGMALALDLAHRQVGHLVVDAGDGTITHPKVSTIGPRSMELFRRW-GVAKQI 87
Query: 106 ERSQPPVDLWRKFIYCTSVTGP-----ILGSVDHMQPQDFEKVVSPVSVAHFSQYXXXXX 160
             +  P D      + T V G       LG+ D     +       +  AH+        
Sbjct: 88  RTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPAHWLAPLLAEA 147
Query: 161 XXXXXXXXXXXICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
                                      G  +       S    D  +    + L+ G   
Sbjct: 148 V--------------------------GERLRTRSRLDSFEQRDDHVRATITDLRTGAT- 180
Query: 221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280
            R +    L+  DGA S  RK +GID       Q   ++ F + +L   LL ER  ++FF
Sbjct: 181 -RAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPEL-RSLLGERAALVFF 238
Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICE--KLIFKLVGWELSDIDV 338
           +  + ++   +      G + L V        ++D S    +  +L+ + V ++ ++I+V
Sbjct: 239 LMLSSSLRFPLRSLDGRGLYNLVV-------GVDDASKSTMDSFELVRRAVAFD-TEIEV 290
Query: 339 IDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398
           +    W +   VA+ F     ++ L GDA H   P+GGFGMNTG+  A +L WK+A+ L+
Sbjct: 291 LSDSEWHLTHRVADSF--SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLR 348
Query: 399 DIAPASILNTYETERKPIAEFNTALSVQNFRAAM--EVPSAL 438
             A   +L TYE ER+P+A  +   +  N R  M  E+P  L
Sbjct: 349 GWAGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGL 390

>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From Angucycline Biosynthesis, Determined To 2.7 A Resolution Length = 499

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 22/238 (9%)
Query: 185 LLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG 244
           L +G E+L GH   ++  TD+  +V+     EG    R++    ++G DG  STVRK  G
Sbjct: 118 LGRGAELLRGHTVRAL--TDEGDHVVVEV--EGPDGPRSLTTRYVVGCDGGRSTVRKAAG 173
Query: 245 IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEG-EFILQ 303
            D  G    +++    FL+ D+    +  RP     I  T  +G++++  L +G + I+ 
Sbjct: 174 FDFPGTSASREM----FLA-DIRGCEITPRP-----IGETVPLGMVMSAPLGDGVDRIIV 223
Query: 304 VPFYPPQQNLEDFSP-EICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY--NQ 360
                P +      P +       +L G ++S  + +    WV       + +  Y   +
Sbjct: 224 CERGAPARRRTGPPPYQEVAAAWQRLTGQDISHGEPV----WVSAFGDPARQVSAYRRGR 279
Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           ++LAGD+ H   PAGG GMN  VQD+ NL WK+A+V+   APA +L+TY  ER P+  
Sbjct: 280 VLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGRAPAGLLDTYHEERHPVGR 337

>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase Involved In Angucycline Biosynthesis Length = 500

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 107/237 (45%), Gaps = 26/237 (10%)
Query: 188 GREILMGHECVSVSATDQCINVIASFLK-EGKCTERNIQCNILIGTDGAGSTVRKLVGID 246
           G +I  GHE +S+  TD    V       EGK T   ++   L+G DG  S+VRK  G D
Sbjct: 120 GADIRRGHEVLSL--TDDGAGVTVEVRGPEGKHT---LRAAYLVGCDGGRSSVRKAAGFD 174
Query: 247 LVGEKDLQKLVSVHFLSKDLGDYLLNER-PGMLFFIFNTEAIGVLVAHDLKEG--EFILQ 303
             G     ++        +L   ++ E  PG           G+++   L  G    I+ 
Sbjct: 175 FPGTAATMEMYLADIKGVELQPRMIGETLPG-----------GMVMVGPLPGGITRIIVC 223
Query: 304 VPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY--NQI 361
               PPQ+     S         +L G +++  + +    WV     A + +  Y   ++
Sbjct: 224 ERGTPPQRRETPPSWHEVADAWKRLTGDDIAHAEPV----WVSAFGNATRQVTEYRRGRV 279
Query: 362 ILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           ILAGD+ H   PAGG GMNT +QDA NL WK+ +V+   A   +L++Y +ER  + +
Sbjct: 280 ILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTATEELLDSYHSERHAVGK 336

>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum Length = 665

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 41/216 (18%)
Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEK-----------------DLQKLVSVHFLSKD 265
            + C  +IG DG  S VR+ +G +++GE+                 D++   ++H  S +
Sbjct: 216 TVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIH--SAE 273
Query: 266 LGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC---E 322
            G  ++  R   L   +       L A   K G             +   F+PE+     
Sbjct: 274 SGSIMIIPRENNLVRFYVQ-----LQARAEKGGRV-----------DRTKFTPEVVIANA 317
Query: 323 KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG 382
           K IF    +++  +D      + +   V EKF     ++ +AGDACH   P  G GMNT 
Sbjct: 318 KKIFHPYTFDVQQLDWF--TAYHIGQRVTEKF-SKDERVFIAGDACHTHSPKAGQGMNTS 374
Query: 383 VQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           + D +NL WK+  VL   A   IL TYE ER+P A+
Sbjct: 375 MMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQ 410

>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum Length = 664

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 104/243 (42%), Gaps = 46/243 (18%)
Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEK-----------------DLQKLVSVHFLSKD 265
            + C  +IG DG  S VR+ +G +++GE+                 D++   ++H  S +
Sbjct: 215 TVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIH--SAE 272
Query: 266 LGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEIC---E 322
            G  ++  R   L   +       L A   K G             +   F+PE+     
Sbjct: 273 SGSIMIIPRENNLVRFYVQ-----LQARAEKGGRV-----------DRTKFTPEVVIANA 316
Query: 323 KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG 382
           K IF    +++  +D      + +   V EKF     ++ +AGDACH   P  G GMNT 
Sbjct: 317 KKIFHPYTFDVQQLDWF--TAYHIGQRVTEKF-SKDERVFIAGDACHTHSPKAGQGMNTS 373
Query: 383 VQDAHNLAWKIASVLKDIAPASILNTYETERKPIA----EFNTALS-VQNFRAAMEVPSA 437
           + D +NL WK+  VL   A   IL TYE ER   A    +F+   S + + R A +V   
Sbjct: 374 MMDTYNLGWKLGLVLTGRAKRDILKTYEEERHAFAQALIDFDHQFSRLFSGRPAKDVADE 433
Query: 438 LGL 440
           +G+
Sbjct: 434 MGV 436

>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger Monooxygenase From The Mithramycin Biosynthetic Pathway In Streptomyces Argillaceus. Length = 570

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 19/235 (8%)
Query: 188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL 247
           G EI  GHE   +    + + V  +    G      ++    +G DG  STVR+L     
Sbjct: 162 GAEIPRGHEVTRLRQDAEAVEVTVA----GPSGPYPVRARYGVGCDGGRSTVRRLAADRF 217
Query: 248 VG-EKDLQKLVS-VHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP 305
            G E  ++ L+  V    +++         G+L   F  E         L  G       
Sbjct: 218 PGTEATVRALIGYVTTPEREVPRRWERTPDGILVLAFPPEG-------GLGPGWSSSSTG 270
Query: 306 FYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY--NQIIL 363
             P      D  P   E L   +     + + + +   W+     A +    Y   +++L
Sbjct: 271 HSP----AADEGPVTLEDLGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYRSGRVLL 326
Query: 364 AGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
           AGDA H   P GG G+NTG+QDA NL WK+A+ ++      +L+TY  ER P+AE
Sbjct: 327 AGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEELLDTYHDERHPVAE 381

>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From Comamonas Testosteroni, In Complex With The Substrate Length = 639

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI- 281
            +Q   ++G DGA S VR+ +G  LVG+   Q    +  L+       + + P + + + 
Sbjct: 197 TVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLA-------VTDFPDVRYKVA 249
Query: 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIF--KLVGWELSDIDVI 339
             +E   VL+    +EG  +++  FY     L D    +  + I   +L+      +   
Sbjct: 250 IQSEQGNVLIIP--REGGHLVR--FYVEMDKL-DADERVASRNITVEQLIATAQRVLHPY 304
Query: 340 DIK----PWVMHAEVAEKFLCCYNQII--------------LAGDACHRFPPAGGFGMNT 381
            ++    PW    E+ ++    Y+ ++              +AGDACH   P  G GMN 
Sbjct: 305 KLEVKNVPWWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNF 364
Query: 382 GVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418
            +QD+ NL WK+A+VL+      +L+TY +ER+ +A+
Sbjct: 365 SMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQVVAQ 401

>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing Monooxygenase From Photorhabdus Luminescens Subsp. Laumondii Tto1 (Target Psi-012791) Length = 412

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 29/197 (14%)
Query: 226 CNILIGTDGAGSTVRKL---------VGID-LVGEKDLQKLVSVHFLSKDLGDYLLN--- 272
            ++L+G DG+ S VRK          VG+  ++G   L   ++   L ++  D   N   
Sbjct: 155 VDVLVGADGSNSKVRKQYLPFIERFDVGVSXIIGRARLTPALTA-LLPQNFRDGTPNSIV 213
Query: 273 -ERPGMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQ---QNLEDFSPE-ICEKLIF 326
            + P  LF       + + V   L E   FI+ V          N+ DFS E +C+ +  
Sbjct: 214 PKSPDWLFISXWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQS 273
Query: 327 KLVGWELS------DIDVIDIKPWVMHAEVAEKFLCCYNQII-LAGDACHRFPPAGGFGM 379
           + + W+ S        D  +I P  +H       L   +  + L GDA H   P  G G 
Sbjct: 274 RXISWDPSLHTLVQQSDXENISP--LHLRSXPHLLPWKSSTVTLLGDAIHNXTPXTGSGA 331
Query: 380 NTGVQDAHNLAWKIASV 396
           NT ++DA  L  K+ASV
Sbjct: 332 NTALRDALLLTQKLASV 348

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	572
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	2e-97
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	5e-94
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	7e-68
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	8e-68
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	3e-65
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	3e-56
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	1e-50
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	3e-50
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-32
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	6e-22
2bry_A	497	NEDD9 interacting protein with calponin homology a	1e-20
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	2e-17
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	5e-15
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	6e-14
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	3e-13
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	7e-13
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	2e-11
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	1e-09
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	4e-05
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	4e-05
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	6e-05
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	2e-04
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	5e-04
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	6e-04
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	7e-04
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	8e-04

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score =  305 bits (784), Expect = 2e-97
 Identities = 121/430 (28%), Positives = 186/430 (43%), Gaps = 38/430 (8%)

Query: 40  NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKL 98
           N+  V VL+VGAG  GL  ++ L + G++  V+E+    S +P+A   N R  + + R  
Sbjct: 2   NDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPR-TMELLRIG 60

Query: 99  DGLAEEIERSQPPVDLWRKFIY--CTSVTGPILGSVDHMQPQDFEKV--VSPVSVAHFSQ 154
            G+A+E+ R+         F+     SV G IL +V              +P   A  SQ
Sbjct: 61  -GVADEVVRADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQ 119

Query: 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFL 214
            KL  +LL Q  K                    G  I  G   +S    D       +  
Sbjct: 120 DKLEPILLAQARKH-------------------GGAIRFGTRLLSFRQHDDDAGAGVTAR 160

Query: 215 KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274
             G   E +++   L+G DG  S VR+ +GI   G   L  +V V F + DL   +    
Sbjct: 161 LAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDA-DLSGIM-EPG 218

Query: 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWEL 333
               +++ + E  G     D +     L V + P + +  EDF+P+ C +LI   +    
Sbjct: 219 TTGWYYLHHPEFKGTFGPTD-RPDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPE 277

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCYNQ---IILAGDACHRFPPAGGFGMNTGVQDAHNLA 390
              +++DI+ W M A +AE++     +   + LAGDA    PP GG   N  V D  +LA
Sbjct: 278 VKPELVDIQGWEMAARIAERW-----REGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLA 332

Query: 391 WKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQ 450
           WK+A+VL+  A A +L+TYE ERK  AE   A ++  +   M    A   D ++      
Sbjct: 333 WKLAAVLQGQAGAGLLDTYEDERKVAAELVVAEALAIYAQRMAPHMAEVWDKSVGYPETL 392

Query: 451 LINRVAGSVL 460
           L  R   S +
Sbjct: 393 LGFRYRSSAV 402

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score =  297 bits (762), Expect = 5e-94
 Identities = 103/402 (25%), Positives = 165/402 (41%), Gaps = 43/402 (10%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLA 102
             VLI+G GPVG+ L++ L    +   V+E+     THP+   I  R ++ +FR+  G+A
Sbjct: 27  TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPR-SMELFRRW-GVA 84

Query: 103 EEIERSQPPVDLWRKFIYCTSVTGPILGSVDH-MQPQDFEKVVSPVSVAHFSQYKLNKLL 161
           ++I  +  P D      + T V G  +  +             +P   A   Q+ L  LL
Sbjct: 85  KQIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLL 144

Query: 162 LKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTE 221
            + +                      G  +       S    D    V A+         
Sbjct: 145 AEAV----------------------GERLRTRSRLDSFEQRDDH--VRATITDLRTGAT 180

Query: 222 RNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281
           R +    L+  DGA S  RK +GID       Q   ++ F + +L   L  ER  + FF+
Sbjct: 181 RAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLG-ERAALFFFL 239

Query: 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDI 341
             + ++   +      G + L V            S     +L+ + V ++  +I+V+  
Sbjct: 240 MLSSSLRFPLRALDGRGLYRLTVGVDD-----ASKSTMDSFELVRRAVAFDT-EIEVLSD 293

Query: 342 KPWVMHAEVAEKFLCCYNQ---IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398
             W +   VA+ F         + L GDA H   P+GGFGMNTG+  A +L WK+A+ L+
Sbjct: 294 SEWHLTHRVADSF-----SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLR 348

Query: 399 DIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
             A   +L TYE ER+P+A  +   +  N R  M+     GL
Sbjct: 349 GWAGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGL 390

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score =  227 bits (580), Expect = 7e-68
 Identities = 85/405 (20%), Positives = 143/405 (35%), Gaps = 56/405 (13%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98
            + +   V++VGAGP G++L+  L   G++  VLE+    +   +      R   VF + 
Sbjct: 7   HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQR 66

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH-FSQYKL 157
            G+       +                           P DF  +      A    Q   
Sbjct: 67  -GILPRFGEVETSTQGHF-----------------GGLPIDFGVLEGAWQAAKTVPQSVT 108

Query: 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG 217
              L +    L                   G +I  GHE +S++     + V       G
Sbjct: 109 ETHLEQWATGL-------------------GADIRRGHEVLSLTDDGAGVTVEV----RG 145

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
              +  ++   L+G DG  S+VRK  G D  G                L D    E    
Sbjct: 146 PEGKHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATM-----EMY---LADIKGVELQPR 197

Query: 278 LFFIFNTEAIGVLVAHDLKEGEF--ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
           +         G+++   L  G    I+     PPQ+     S         +L G +++ 
Sbjct: 198 MIGETLPG--GMVMVGPLPGGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIAH 255

Query: 336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
            + + +  +        ++     ++ILAGD+ H   PAGG GMNT +QDA NL WK+ +
Sbjct: 256 AEPVWVSAFGNATRQVTEYRR--GRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGA 313

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
           V+   A   +L++Y +ER  + +     +       +  P    L
Sbjct: 314 VVNGTATEELLDSYHSERHAVGKRLLMNTQAQGLLFLSGPEVQPL 358

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score =  227 bits (580), Expect = 8e-68
 Identities = 88/405 (21%), Positives = 145/405 (35%), Gaps = 56/405 (13%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98
            + +   V++VGAGP GL+L+  L   G+   VLE+    +   +      R   VF + 
Sbjct: 8   HHRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQR 67

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKL 157
            G+       +                          +P DF  +      V    Q   
Sbjct: 68  -GILPAFGPVETSTQGHF-----------------GGRPVDFGVLEGAHYGVKAVPQSTT 109

Query: 158 NKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEG 217
             +L +                        G E+L GH   +++     + V      EG
Sbjct: 110 ESVLEEWALGR-------------------GAELLRGHTVRALTDEGDHVVVEV----EG 146

Query: 218 KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277
               R++    ++G DG  STVRK  G D  G        S       L D    E    
Sbjct: 147 PDGPRSLTTRYVVGCDGGRSTVRKAAGFDFPGTS-----ASREMF---LADIRGCEITPR 198

Query: 278 LFFIFNTEAIGVLVAHDLKEGE--FILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD 335
                    +G++++  L +G    I+     P ++       +       +L G ++S 
Sbjct: 199 PIGETV--PLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISH 256

Query: 336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
            + + +  +   A     +     +++LAGD+ H   PAGG GMN  VQD+ NL WK+A+
Sbjct: 257 GEPVWVSAFGDPARQVSAYRR--GRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAA 314

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGL 440
           V+   APA +L+TY  ER P+       +       +       L
Sbjct: 315 VVSGRAPAGLLDTYHEERHPVGRRLLMNTQAQGMLFLSGDEMQPL 359

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score =  221 bits (566), Expect = 3e-65
 Identities = 87/398 (21%), Positives = 141/398 (35%), Gaps = 61/398 (15%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
             V++VG GPVGL+L+  L   G+   VLEK      H +A  ++ R         GL +
Sbjct: 50  TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLR-GLLD 108

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHF-SQYKLNKLLL 162
                                           Q  DF  V +         Q +   LL 
Sbjct: 109 RFLEGTQVAKGLPFA-------------GIFTQGLDFGLVDTRHPYTGLVPQSRTEALLA 155

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
           +   +                    G EI  GHE   +    +   V  +    G     
Sbjct: 156 EHAREA-------------------GAEIPRGHEVTRLRQDAEA--VEVTV--AGPSGPY 192

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282
            ++    +G DG  STVR+L      G +          L   +G     ER     +  
Sbjct: 193 PVRARYGVGCDGGRSTVRRLAADRFPGTEATV-----RAL---IGYVTTPEREVPRRWER 244

Query: 283 NTEAIGVLVAHDLKEGE----FILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDV 338
             +  G+LV     EG     +      + P  +    + E     + ++ G   + + +
Sbjct: 245 TPD--GILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRG---TPLTL 299

Query: 339 IDIKPWV----MHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA 394
            +   W+      +  A+++     +++LAGDA H   P GG G+NTG+QDA NL WK+A
Sbjct: 300 TEPVSWLSRFGDASRQAKRYRS--GRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLA 357

Query: 395 SVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAM 432
           + ++      +L+TY  ER P+AE     +        
Sbjct: 358 ARVRGWGSEELLDTYHDERHPVAERVLLNTRAQLALMR 395

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score =  199 bits (507), Expect = 3e-56
 Identities = 90/423 (21%), Positives = 158/423 (37%), Gaps = 59/423 (13%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKL-----GIKCSVLEKNKAFSTHPQAHFINNRYAL 93
            +E+   VLIVGAGP GL+ + +L++       +K  +++K      + QA  +  R   
Sbjct: 4   YSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLE 63

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFS 153
             + L GLA++I      +      +Y     G I       +  D    +S        
Sbjct: 64  SLKNL-GLADKILSEANDMSTIA--LYNPDENGHI---RRTDRIPDTLPGISRYHQVVLH 117

Query: 154 QYKLNKLLLKQLEKLNFKICTSE-----------------------------GTEGLHNH 184
           Q ++ + +L  + +++      E                              +E     
Sbjct: 118 QGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTP 177

Query: 185 LLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG 244
           L  G +   G    ++   ++          +       + C  +IG DG  S VR+ +G
Sbjct: 178 LQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLG 237

Query: 245 IDLVGEK-DLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGE--FI 301
            +++GE+ D    V     + +  D              ++   G ++    +     F 
Sbjct: 238 FEMIGEQTDYIWGVLDAVPASNFPD-------IRSRCAIHSAESGSIMIIPRENNLVRFY 290

Query: 302 LQVPFYPP---QQNLEDFSPEICEKLIFKLVGWELSDIDVIDIK---PWVMHAEVAEKFL 355
           +Q+        + +   F+PE+      K+        DV  +     + +   V EKF 
Sbjct: 291 VQLQARAEKGGRVDRTKFTPEVVIANAKKIFHPY--TFDVQQLDWFTAYHIGQRVTEKF- 347

Query: 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKP 415
               ++ +AGDACH   P  G GMNT + D +NL WK+  VL   A   IL TYE ER+P
Sbjct: 348 SKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQP 407

Query: 416 IAE 418
            A+
Sbjct: 408 FAQ 410

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score =  183 bits (466), Expect = 1e-50
 Identities = 94/472 (19%), Positives = 170/472 (36%), Gaps = 61/472 (12%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYAL-VFR 96
           +  + V VLIVG GP GL L+  L     I+  ++E+ +      QA  I  R  + +F 
Sbjct: 28  AVPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACR-TMEMFE 86

Query: 97  KLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
                A+ I +    ++    +       G I     H + QD E  +S       +Q +
Sbjct: 87  AF-EFADSILKEACWINDVTFWKPDPGQPGRI---ARHGRVQDTEDGLSEFPHVILNQAR 142

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
           ++   L+++     ++      E  +   +   ++  G     V+ T      +      
Sbjct: 143 VHDHYLERMRNSPSRL------EPHYARRVLDVKVDHGAADYPVTVT------LERCDAA 190

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL--NER 274
                  +Q   ++G DGA S VR+ +G  LVG+       +  +    + D L   +  
Sbjct: 191 HAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDS-----ANQAWG---VMDVLAVTDFP 242

Query: 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN----LEDFSPEICEKLIFKLVG 330
                    +E   VL+            V       +      + + E       +++ 
Sbjct: 243 DVRYKVAIQSEQGNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLH 302

Query: 331 WELSDIDVIDIKPWVM----HAEVAEKF----------LCCYNQIILAGDACHRFPPAGG 376
                ++V ++  W         +  K+               ++ +AGDACH   P  G
Sbjct: 303 PY--KLEVKNVP-WWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAG 359

Query: 377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE---FNTALSVQNFRAAME 433
            GMN  +QD+ NL WK+A+VL+      +L+TY +ER+ +A+          + F    +
Sbjct: 360 QGMNFSMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQVVAQQLIDFDREWAKMFSDPAK 419

Query: 434 VPSALGLDPTIANSVHQLINRV--------AGSVLPSVLQKALLEGIFKVGR 477
                G+DP       +   R         A S+L    +   L   F VG 
Sbjct: 420 EGGQGGVDPKEFQKYFEQHGRFTAGVGTHYAPSLLTGQAKHQALASGFTVGM 471

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score =  177 bits (450), Expect = 3e-50
 Identities = 65/404 (16%), Positives = 121/404 (29%), Gaps = 52/404 (12%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ--AHFINNRYALVFRKLDGL 101
             V I+GAGP GL+L  LL K GI   +LE+        +  A  +      + R+  G+
Sbjct: 3   TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GV 61

Query: 102 AEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLL 161
              + R     +               +      +  D +++    +V  + Q ++ + L
Sbjct: 62  DRRMARDGLVHEGVE------------IAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDL 109

Query: 162 LKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTE 221
           ++  E                        +    E        +      +F ++G    
Sbjct: 110 MEAREACG------------------ATTVYQAAEVRLHDLQGE--RPYVTFERDG--ER 147

Query: 222 RNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281
             + C+ + G DG     R+ +  + +   +        +    LG              
Sbjct: 148 LRLDCDYIAGCDGFHGISRQSIPAERLKVFE------RVYPFGWLGLLADTPPVSHELIY 201

Query: 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE-ICEKLIFKL---VGWELSDID 337
            N      L +               P  + +ED+S E    +L  +L   V  +L    
Sbjct: 202 ANHPRGFALCSQR--SATRSQYYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGP 259

Query: 338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
            ++     + + V E     + ++ LAGDA H  PP G  G+N    D   L   +    
Sbjct: 260 SLEKSIAPLRSFVVEPM--QHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAY 317

Query: 398 KDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLD 441
           ++     +L  Y              S          P      
Sbjct: 318 RE-GRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFS 360

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score =  127 bits (322), Expect = 2e-32
 Identities = 65/395 (16%), Positives = 131/395 (33%), Gaps = 79/395 (20%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           VLI G G  G +L+ LL + G +  V+E+ +       A  +      V     GL  E+
Sbjct: 9   VLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAA-GLLAEV 67

Query: 106 -ERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHF----SQYKLNKL 160
             R                  G +L   ++          S V    +        L +L
Sbjct: 68  TRRGGRVRHELE-----VYHDGELLRYFNY----------SSVDARGYFILMPCESLRRL 112

Query: 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
           +L++++                       E+L      +V   ++        L +G   
Sbjct: 113 VLEKIDGEA------------------TVEMLFETRIEAVQRDERHAIDQVR-LNDG--- 150

Query: 221 ERNIQCNILIGTDGAGSTVRK-LVGIDLVG--------------EKDLQKLVSVHFLSKD 265
            R ++  +++G DG  S VR+ L+ ID+                   + +   ++  S  
Sbjct: 151 -RVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAERNRLYVDS-- 207

Query: 266 LGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLI 325
                  +     F+    +   ++V+   +E   ++            +      ++ +
Sbjct: 208 -------QGGLAYFYPIGFDRARLVVSFPREEARELMADT-------RGESLRRRLQRFV 253

Query: 326 FKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQ 384
                  ++ +      K   +     +++    + + + GDA H   P  G GMN  ++
Sbjct: 254 GDESAEAIAAVTGTSRFKGIPIGYLNLDRYWA--DNVAMLGDAIHNVHPITGQGMNLAIE 311

Query: 385 DAHNLAWKIASVLK-DIAPASILNTYETERKPIAE 418
           DA  LA  +   L+   A    L  Y+ ER P+ +
Sbjct: 312 DASALADALDLALRDACALEDALAGYQAERFPVNQ 346

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 97.1 bits (242), Expect = 6e-22
 Identities = 72/413 (17%), Positives = 124/413 (30%), Gaps = 87/413 (21%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFIN---NRYALVFRKLDGLA 102
           V I+G GPVGL ++ LL + GI  SV E++           ++          +K  GL 
Sbjct: 29  VAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA-GLL 87

Query: 103 EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLL 162
           +       P+      +      G IL +    +    E       +   ++  L  +LL
Sbjct: 88  QTYYDLALPMG-----VNIADEKGNILST----KNVKPENRFDNPEI---NRNDLRAILL 135

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
             LE            + +              + V +    +      +F +       
Sbjct: 136 NSLEN-----------DTVIW----------DRKLVMLEPGKK--KWTLTF-ENK----P 167

Query: 223 NIQCNILIGTDGAGSTVRKLV--------------------GIDLVGEKDLQKLVSVHFL 262
           +   +++I  +G  S VRK V                     I+  G   L     +   
Sbjct: 168 SETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMAS 227

Query: 263 SKDLGDYLLNERPGML---FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE 319
            +    +      G L         +        D +    ++        +   D+   
Sbjct: 228 HQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDF-L---LKEFSDWDER 283

Query: 320 ICEKLIFK---LVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGG 376
             E LI      VG       +   KPW                I + GDA H  PP  G
Sbjct: 284 YKE-LIHTTLSFVGLATRIFPLE--KPWKSKRP---------LPITMIGDAAHLMPPFAG 331

Query: 377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429
            G+N+G+ DA  L+  +A    + +    +  YE +     +     S QN  
Sbjct: 332 QGVNSGLVDALILSDNLADGKFN-SIEEAVKNYEQQMFIYGKEAQEESTQNEI 383

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497

 Score = 94.4 bits (234), Expect = 1e-20
 Identities = 75/445 (16%), Positives = 136/445 (30%), Gaps = 113/445 (25%)

Query: 44  VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
              L+VGAGP GL  ++ L  LG +  ++EK   FS H   H                  
Sbjct: 93  TKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLH------------------ 134

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
                     LW   I                   D   + +      F    L+ + ++
Sbjct: 135 ----------LWPFTI------------------HDLRALGAKKFYGRFCTGTLDHISIR 166

Query: 164 QLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA-TDQCINVIASFLKEGKCTER 222
           QL+ L  K+            LL G EI  G +   +     +     A           
Sbjct: 167 QLQLLLLKVA-----------LLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLA 215

Query: 223 NIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKD-LGDYLLNERPGM---- 277
           + + ++LI   G           ++ G+  +   ++ +F++   + +  + E  G+    
Sbjct: 216 SYEFDVLISAAGGKFVPEGFTIREMRGKLAIG--ITANFVNGRTVEETQVPEISGVARIY 273

Query: 278 --LFFIFNTEAIGV---LVAHDLKEGEFILQVPFYPP----------------------- 309
              FF    +A G+    + +   E  + +                              
Sbjct: 274 NQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANV 333

Query: 310 -QQNLEDFSPEICE--------KLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360
             + L+ F+    +        KL F        D+   D    +M AE + +    +  
Sbjct: 334 VPEALQRFARAAADFATHGKLGKLEFAQDARGRPDVAAFDFT-SMMRAESSARVQEKHGA 392

Query: 361 ---IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417
              + L GD         G G+  G   A + AW +    +   P  +L     ER+ + 
Sbjct: 393 RLLLGLVGDCLVEPFWPLGTGVARGFLAAFDAAWMVKRWAEGAGPLEVL----AERESLY 448

Query: 418 EFNTALSVQNFRAAMEVPSALGLDP 442
           +  +  S +N        +  GLDP
Sbjct: 449 QLLSQTSPENM---HRNVAQYGLDP 470

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 83.7 bits (206), Expect = 2e-17
 Identities = 54/408 (13%), Positives = 104/408 (25%), Gaps = 77/408 (18%)

Query: 46  VLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAE 103
           +L++GAGP GLV +  L +        ++EKN           +  R            +
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLD 62

Query: 104 EIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
             ER  P                P L S                 +    +  L   L  
Sbjct: 63  APERLNPQF--LE-DFKLVHHNEPSLMSTGV-------------LLCGVERRGLVHALRD 106

Query: 164 QLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERN 223
           +                       G  I      +                         
Sbjct: 107 KCRSQ-------------------GIAIRFESPLLEHGEL------------------PL 129

Query: 224 IQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP-GMLFFIF 282
              ++++  +G            LV + D  +         +   +    +    +  +F
Sbjct: 130 ADYDLVVLANGVNHKTAHFTEA-LVPQVDYGR---------NKYIWYGTSQLFDQMNLVF 179

Query: 283 NTEAIGVLVAH--DLKEGEFILQVPFYPPQQN---LEDFSPEICEKLIFKLVGWELSDID 337
            T    + +AH     +      V           L + S E   + + K+   EL    
Sbjct: 180 RTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGHG 239

Query: 338 VI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395
           ++      W     ++    C   +++L GDA      + G G    V  A  L   + +
Sbjct: 240 LVSQPGLGWRNFMTLSHD-RCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCT 298

Query: 396 VLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPT 443
              +    + L  +E    P+ +     +  +      V   + L   
Sbjct: 299 ---EDGVPAALKRFEERALPLVQLFRGHADNSRVWFETVEERMHLSSA 343

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 76.4 bits (188), Expect = 5e-15
 Identities = 54/398 (13%), Positives = 116/398 (29%), Gaps = 77/398 (19%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-------STHPQAHFINNRYALVFRKL 98
           VL++GAGP G V + L+ K G K  ++EK + F       S  P+             + 
Sbjct: 8   VLVIGAGPAGTVAASLVNKSGFKVKIVEK-QKFPRFVIGESLLPRC-------MEHLDEA 59

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF-EKVVSPVSVA-HFSQYK 156
            G  + ++          KF+               +   +F ++  +  +      +  
Sbjct: 60  -GFLDAVKAQGFQQKFGAKFVRG-----------KEIADFNFSDQFSNGWNWTWQVPRGN 107

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
            +K L  +  +                   QG ++        +             +++
Sbjct: 108 FDKTLADEAAR-------------------QGVDVEYEVGVTDIKFFGTDSVTT---IED 145

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG 276
               +R I+   +I   G G  + ++ G+D     + ++ +  H   KD+   +  E  G
Sbjct: 146 INGNKREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHI--KDVKRPVAAEMEG 203

Query: 277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYP---------PQQNLEDF---SPEICEKL 324
                   +    +       G   +     P         P++ +         I E+ 
Sbjct: 204 NRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAERF 263

Query: 325 IFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQ 384
                  E    +   I+ + + A          +  +L G+A     P    G    ++
Sbjct: 264 K----SEEFLF-EPRTIEGYAISASK-----LYGDGFVLTGNATEFLDPIFSSGATFAME 313

Query: 385 DAHNLAWKIASVLKDIAPASILNTYETE-RKPIAEFNT 421
                       LK     +    +     + I  F +
Sbjct: 314 SGSKGGKLAVQFLKG-EEVNWEKDFVEHMMQGIDTFRS 350

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 73.9 bits (181), Expect = 6e-14
 Identities = 60/396 (15%), Positives = 117/396 (29%), Gaps = 84/396 (21%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-------STHPQAHFINNRYALVFRKL 98
           V I+G GP G V  + L KLG   ++ E+  AF       S  P    I         +L
Sbjct: 26  VAIIGGGPAGSVAGLTLHKLGHDVTIYER-SAFPRYRVGESLLPGTMSI-------LNRL 77

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVT---GPILGSVDHMQPQDFEKVVSPVSVAHFSQY 155
            GL E+I+         + ++   S T   G                           + 
Sbjct: 78  -GLQEKIDA--------QNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKRE 128

Query: 156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLK 215
           + +KLLL +                          +        V  +D    V+ +  +
Sbjct: 129 EFDKLLLDEARSRGI-------------------TVHEETPVTDVDLSDPDR-VVLTVRR 168

Query: 216 EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV--HFLS-------KDL 266
            G      ++ + +I   G+G  + + +G  +    +  +  +V  +F            
Sbjct: 169 GG--ESVTVESDFVIDAGGSGGPISRKLG--VRQYDEFYRNFAVWSYFKLKDPFEGDLKG 224

Query: 267 GDYLLNERPG-MLFFIF--NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF---SPEI 320
             Y +    G +       +  ++G++V           +V                 + 
Sbjct: 225 TTYSITFEDGWVWMIPIKDDLYSVGLVVDRS-----KSAEVREQGADAFYSSTLAKCAKA 279

Query: 321 CEKLIFKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGM 379
            + L           + +V  ++ W    EV        ++  L GDA     P    G+
Sbjct: 280 MDIL------GGAEQVDEVRIVQDWSYDTEV-----FSADRFFLCGDAACFTDPLFSQGV 328

Query: 380 NTGVQDAHNLAWKIASVLK-DIAPASILNTYETERK 414
           +   Q A + A  I  + +      ++   Y    +
Sbjct: 329 HLASQSAVSAAAAIDRITRHGDEKDAVHAWYNRTYR 364

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 71.1 bits (174), Expect = 3e-13
 Identities = 61/398 (15%), Positives = 120/398 (30%), Gaps = 84/398 (21%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-------STHPQAHFINNRYALVFRKL 98
           ++++G GP G  L+  +   G +  +LE+ +AF       S  P           +   L
Sbjct: 10  LIVIGGGPGGSTLASFVAMRGHRVLLLER-EAFPRHQIGESLLPAT------VHGICAML 62

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF--EKVVSPVSVAHFSQYK 156
            GL +E++R+  P+     F +         G         F               + +
Sbjct: 63  -GLTDEMKRAGFPIKRGGTFRW---------GKEPEPWTFGFTRHPDDPYGFAYQVERAR 112

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
            + +LL+  E+                   +G ++   HE + V    +    +     E
Sbjct: 113 FDDMLLRNSER-------------------KGVDVRERHEVIDVLFEGERAVGVRYRNTE 153

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV--HF-----LSKDLGDY 269
           G   E       ++   G  + V + VG          + V++  +F     L       
Sbjct: 154 G--VELMAHARFIVDASGNRTRVSQAVG--ERVYSRFFQNVALYGYFENGKRLPAPRQGN 209

Query: 270 LLNERP----GMLFFIFNTEA-IGVLVAHDLKEGEFILQVPFYPPQQNLEDF-------S 317
           +L+            + +T   +G +V+ +  E            +   E          
Sbjct: 210 ILSAAFQDGWFWYIPLSDTLTSVGAVVSREAAE----------AIKDGHEAALLRYIDRC 259

Query: 318 PEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGF 377
           P I E L            ++   K +              N + L GDA     P    
Sbjct: 260 PIIKEYLAPATRVTTGDYGEIRIRKDYSYCNTS-----FWKNGMALVGDAACFVDPVFSS 314

Query: 378 GMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERK 414
           G++     A  +A  I + L  +++       +E   +
Sbjct: 315 GVHLATYSALLVARAINTCLAGEMSEQRCFEEFERRYR 352

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 69.6 bits (171), Expect = 7e-13
 Identities = 69/423 (16%), Positives = 120/423 (28%), Gaps = 123/423 (29%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-------HPQAHFINNRYALVFRKL 98
            +++GAG  GL  ++ L + GI C V E  K            P             + +
Sbjct: 26  AIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNG----------VKCM 75

Query: 99  D--GLAEEIER-SQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQY 155
              G+ + +E    P     R+  Y    +G  +           E+  S       ++ 
Sbjct: 76  AHLGMGDIMETFGGPL----RRMAYRDFRSGENMTQFS--LAPLIERTGSRPCPVSRAE- 128

Query: 156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLK 215
            L + +L              G + +            G              V   F  
Sbjct: 129 -LQREMLDYW-----------GRDSVQF----------GKRVTRCEEDAD--GVTVWF-T 163

Query: 216 EGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQK---------LVSVHFLSKDL 266
           +G     +   ++LI  DG+ S +R      ++G    ++         LV +       
Sbjct: 164 DG----SSASGDLLIAADGSHSALRPW----VLGFTPQRRYAGYVNWNGLVEIDEALAPG 215

Query: 267 GDYLLNERPGMLFFIFNTEAIGV---LVAHDLKEGEFILQVPFYPP-------------- 309
             +              T  +G    +    +  G F        P              
Sbjct: 216 DQW--------------TTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADL 261

Query: 310 QQNLEDFSPEICEKLI-----FKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILA 364
            +    ++P + +KLI           E+ DI+       V              ++ L 
Sbjct: 262 SRYFAGWAPPV-QKLIAALDPQTTNRIEIHDIEPFS--RLV------------RGRVALL 306

Query: 365 GDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424
           GDA H   P  G G    ++DA  L        +DIA A  L  YE +R          +
Sbjct: 307 GDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT-RDIAAA--LREYEAQRCDRVRDLVLKA 363

Query: 425 VQN 427
            + 
Sbjct: 364 RKR 366

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 68/420 (16%), Positives = 119/420 (28%), Gaps = 101/420 (24%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEK-NKAF-------STHPQAHFINNRYALVFRK 97
           + +VG    GL  +++L   G+   V E+  +            P+              
Sbjct: 8   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPEL----------VHY 57

Query: 98  LDGLAEEIE-RSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
           L     E++  S P         Y  ++TG  +GSV                   +    
Sbjct: 58  LLEQGVELDSISVPS----SSMEYVDALTGERVGSVPA-----------DWRFTSYDS-- 100

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHL---LQGREILMGHECVSVSATDQCINVIASF 213
                                   ++  L               V +S   +   V   F
Sbjct: 101 ------------------------IYGGLYELFGPERYHTSKCLVGLSQDSE--TVQMRF 134

Query: 214 LKEGKCTERNIQCNILIGTDGAGSTVRK-LVGID-----------LVGEKDLQKLVSVHF 261
             +G       + N +IG DG  S VRK L+GI+           ++   ++   V  +F
Sbjct: 135 -SDG----TKAEANWVIGADGGASVVRKRLLGIEPTYAGYVTWRGVLQPGEVADDVWNYF 189

Query: 262 LSK---DLGD------YLLNERPGMLFFIFNTEAI-GVLVAHDLKEGEFILQVPFYPPQQ 311
             K    L D      Y +  R        N +    V    DL E    ++    P   
Sbjct: 190 NDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSV 249

Query: 312 NLEDFSPEICEKLIFKLVGWELSDIDVID----IKPWVMHAEVAEKFLCCYNQIILAGDA 367
           +    +P    +   K         D++         V+     ++    + +++L GDA
Sbjct: 250 HNNSLNPHNLRQFHSKGESLFKPFRDLVLNASSPFVTVVADATVDRM--VHGRVLLIGDA 307

Query: 368 CHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427
                P    G      DA  LA        D+  +  L ++ET +            + 
Sbjct: 308 AVTPRPHAAAGGAKASDDARTLAEVFTK-NHDLRGS--LQSWETRQLQQGHAYLNKVKKM 364

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 72/416 (17%), Positives = 122/416 (29%), Gaps = 112/416 (26%)

Query: 46  VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFST-------HPQAHFINNRYALVFRK 97
           +LI GAG  GL  ++ L + GI K ++LE +             P A            +
Sbjct: 7   ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAA-------VEALAE 59

Query: 98  LDGLAEEIER-SQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
           L GL   +   + P  +L          +G  + S              P    H  +  
Sbjct: 60  L-GLGPALAATAIPTHELRYI-----DQSGATVWSEPRGVEAGNA---YPQYSIHRGE-- 108

Query: 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKE 216
           L  +LL  + +                  L  + +  G     +   D    V+    ++
Sbjct: 109 LQMILLAAVRER-----------------LGQQAVRTGLGVERIEERDG--RVLIGA-RD 148

Query: 217 GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQK---------LVSVHFLSKDLG 267
           G    + +  ++L+G DG  S VR      L  ++             +           
Sbjct: 149 GHGKPQALGADVLVGADGIHSAVRAH----LHPDQRPLSHGGITMWRGVTEFDRFLDGKT 204

Query: 268 DYLLNERPGMLFFIFNTEAIGVLVAHDLKEGE---FILQVPFYPPQQN------------ 312
             + N+        +      +   H  +      ++  VP     Q             
Sbjct: 205 MIVANDEHWSRLVAY-----PISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRL 259

Query: 313 ------LEDFSPEICEKLIFKLVG-------WELSDIDVIDIKPWVMHAEVAEKFLCCYN 359
                   D+     +  I  L+        + + D D +    W               
Sbjct: 260 EDVLPFFADWDLGWFD--IRDLLTRNQLILQYPMVDRDPLP--HWG------------RG 303

Query: 360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKP 415
           +I L GDA H   P G  G +  + D   LA  +A    D+A A  L  YE  R+P
Sbjct: 304 RITLLGDAAHLMYPMGANGASQAILDGIELAAALAR-NADVAAA--LREYEEARRP 356

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 67/413 (16%), Positives = 121/413 (29%), Gaps = 111/413 (26%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-------HPQAHFINNRYALVFRKL 98
             + G G  GL  +I L + G    + EK+                     R   V   L
Sbjct: 14  AEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNG----LR---VLEGL 66

Query: 99  DGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLN 158
            G  +++ +       +  +     +    +                P  +   S   L+
Sbjct: 67  -GALDDVLQGSHTPPTYETW-----MHNKSVSKETFNGL--------PWRIMTRSH--LH 110

Query: 159 KLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGK 218
             L+ +   L                   G +I +  E V+                 G+
Sbjct: 111 DALVNRARAL-------------------GVDISVNSEAVAADPV-------------GR 138

Query: 219 CTERN---IQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVS---------VHFLSKDL 266
            T +    ++ ++++G DG GS VR  +G         Q             V  + K+L
Sbjct: 139 LTLQTGEVLEADLIVGADGVGSKVRDSIGFK-------QDRWVSKDGLIRLIVPRMKKEL 191

Query: 267 GDYLLNERPGMLFFIFNTEAIG-----------VLVAHDLKEGEFILQVPFYPPQQNLED 315
           G    +    M  F    + I             L+A         + +      +    
Sbjct: 192 GHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPF 251

Query: 316 FSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAG 375
             P + E    K   ++  +   +D   W    +VA           L GDA H   PA 
Sbjct: 252 LEPCLIEAAKLKTARYDKYETTKLD--SWT-RGKVA-----------LVGDAAHAMCPAL 297

Query: 376 GFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTYETERKPIAEFNTALSVQN 427
             G    + +    A+ ++  L++ +     L  +ET  +PI +   ALS   
Sbjct: 298 AQGAGCAMVN----AFSLSQDLEEGSSVEDALVAWETRIRPITDRCQALSGDY 346

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 72/412 (17%), Positives = 126/412 (30%), Gaps = 137/412 (33%)

Query: 28  CRALSDS-KTIVSNEAVVPVLIVGAGPVG--LVLSILLTK--------LGIKCSVLEKN- 75
           C+ + D  K+I+S E +  +++      G   +   LL+K        +     VL  N 
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---EVLRINY 91

Query: 76  ----KAFSTHPQA------HFINNRYAL-----VFRKLDGLAEEIERSQPPVDLWRK--- 117
                   T  +        +I  R  L     VF K +     + R QP + L R+   
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-----VSRLQPYLKL-RQALL 145

Query: 118 --------FIY----C--TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK 163
                    I        T V   +  S       DF+     +   +       + +L+
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-----IFWLNLKNCNSPETVLE 200

Query: 164 QLEKLNFKICTSEGTEGLHN--------HLLQG--REILMGH---ECVSVSATD--QCIN 208
            L+KL ++I     T    +        H +Q   R +L       C+ V      Q   
Sbjct: 201 MLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAK 257

Query: 209 VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHF---LSKD 265
              +F         N+ C IL+       T R     D +       +   H    L+ D
Sbjct: 258 AWNAF---------NLSCKILL-------TTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 266 LGDYL----LNERPGMLFFIFNTEAIGV------LVAHDLKEG----EFILQVPF----- 306
               L    L+ RP  L      E +        ++A  +++G    +    V       
Sbjct: 302 EVKSLLLKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 307 ---------YPP--QQNLEDFS--PE---ICEKLIFKLVGW-ELSDIDVIDI 341
                     P   ++  +  S  P    I   L+  +  W ++   DV+ +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVV 407

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 7e-06
 Identities = 42/388 (10%), Positives = 100/388 (25%), Gaps = 134/388 (34%)

Query: 248 VGEKDL--QKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP 305
            GE     + ++S  F    + ++   +   M   I + E           E + I+   
Sbjct: 11  TGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILSKE-----------EIDHIIMSK 58

Query: 306 FYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAG 365
                              +F    W L        K      E+ +KF           
Sbjct: 59  -----------DAVSGTLRLF----WTLLS------KQ----EEMVQKF----------- 82

Query: 366 DACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK--DIAPASILNTYETERKPIAEFNTA- 422
                        +   ++   N  + + S +K     P+ +   Y  +R  +  +N   
Sbjct: 83  -------------VEEVLRI--NYKF-LMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQ 124

Query: 423 ----LSVQNFRAAMEVPSAL-GLDPTIANSVHQLINRVAG---SVL-PSVLQKALLE--- 470
                +V   +  +++  AL  L P     +  +     G   + +   V     ++   
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSGKTWVALDVCLSYKVQCKM 180

Query: 471 --GIF--KVGRAQLSESLLNESNPL----------GSSRLAKLRHIFEEGKS------LQ 510
              IF   +      E++L     L           S   + ++      ++        
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 511 LQFP--------------AEDLGFRCHV----------HFHNNLSALHVTASSISNSFLH 546
             +                      C +           F +  +  H++    S +   
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-T 299

Query: 547 QSNSEKIYFRY--HKLGSFGHQLILVSP 572
               + +  +Y   +      +++  +P
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNP 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 47/266 (17%), Positives = 86/266 (32%), Gaps = 69/266 (25%)

Query: 3   IAAFTRGLNCFSRIKTFPYPYGYTQCRALSDS-KTIVSNE--------AVVP--VLIVGA 51
           IA   R  +  +    + +         +  S   +   E        +V P    I   
Sbjct: 333 IAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--- 387

Query: 52  GPVGLVLSIL------------LTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD 99
            P   +LS++            + KL  K S++EK    ST      I + Y  +  KL+
Sbjct: 388 -PTI-LLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTI----SIPSIYLELKVKLE 440

Query: 100 GLAE---------EIERSQPPVDL----WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSP 146
                         I ++    DL      ++ Y        +G   H++  +  +    
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS------HIG--HHLKNIEHPE---- 488

Query: 147 VSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC 206
             +  F    L+   L+Q  K+     T+    G   + LQ  +    + C +    ++ 
Sbjct: 489 -RMTLFRMVFLDFRFLEQ--KIR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 207 INVIASFLKEGKCTERNIQC---NIL 229
           +N I  FL   K  E  I     ++L
Sbjct: 545 VNAILDFLP--KIEENLICSKYTDLL 568

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
           +IVG+G  G V +  L KL  K  V+EK 
Sbjct: 4  YIIVGSGLFGAVCANELKKLNKKVLVIEKR 33

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          +LIVGAG  G V+   L + G +  ++++ 
Sbjct: 6  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQR 35

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEK 74
           LIVGAG  G VL+  L   G +  ++++
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLIVDR 60

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAFSTHP 82
          +   V  ++ VG GP  + L+I L +       ++   L+K   +  H 
Sbjct: 26 ATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG 74

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
          +LIVGAG  GLV   LLT+ G   ++LE N 
Sbjct: 47 ILIVGAGIAGLVAGDLLTRAGHDVTILEANA 77

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 41.4 bits (96), Expect = 7e-04
 Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 13/102 (12%)

Query: 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFN 420
           II  GD      P  G G N     A  L  +I +    +         E  R+      
Sbjct: 310 IIGLGDIQATVDPVLGQGANMASYAAWILGEEILA--HSVYDLRFSEHLERRRQDRVLCA 367

Query: 421 TALSVQNFRAAMEVP---------SALGLDPTIANSVHQLIN 453
           T  +  NF  +               L     +A+      N
Sbjct: 368 TRWT--NFTLSALSALPPEFLAFLQILSQSREMADEFTDNFN 407

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 46 VLIVGAGPVGLVLS-ILLTKLGIKCSVLEK 74
          + +VG+G  GL ++  + T+L  +  VLE+
Sbjct: 10 LFVVGSGFFGLTIAERVATQLDKRVLVLER 39

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	572
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	100.0
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	100.0
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	100.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	100.0
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	100.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	100.0
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	100.0
4hb9_A	412	Similarities with probable monooxygenase; flavin,	100.0
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	100.0
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	100.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	100.0
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	100.0
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	100.0
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	100.0
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	100.0
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	100.0
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	100.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	100.0
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	100.0
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	100.0
3atr_A	453	Conserved archaeal protein; saturating double bond	100.0
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	100.0
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.97
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.97
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.96
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.96
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.96
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.96
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.94
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.77
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.65
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.59
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.55
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.54
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.44
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.43
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.43
3dme_A	369	Conserved exported protein; structural genomics, P	99.41
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.39
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.38
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.35
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.32
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.32
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.32
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.31
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.29
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.29
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.27
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.25
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.23
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.2
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.2
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.17
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.17
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.17
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.15
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.14
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.14
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.13
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.12
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.11
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.11
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.09
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.09
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.07
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.07
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.07
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.06
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.06
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.05
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.04
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.04
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.02
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.99
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.98
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.97
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.97
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.96
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.95
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.95
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.95
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.94
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.94
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.92
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.91
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.91
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.9
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.9
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.89
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.89
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.88
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.87
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.87
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.86
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.86
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.85
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.84
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.83
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.82
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.82
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.8
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.77
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.76
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.75
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.74
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.72
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.72
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.71
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.64
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.64
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.61
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.59
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.57
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.57
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.54
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.54
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.5
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.47
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.43
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.38
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.36
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.35
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.33
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.32
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.31
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.29
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.28
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.28
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.27
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.27
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.26
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.25
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.23
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.22
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.21
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.21
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.2
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.2
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.19
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.17
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.17
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.16
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.15
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.13
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.13
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.13
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.13
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.09
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.09
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.08
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.08
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.06
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.05
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.05
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.99
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.99
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.98
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.97
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.97
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.97
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.96
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.95
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.94
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.93
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.93
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.93
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.92
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.88
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.88
4dna_A	463	Probable glutathione reductase; structural genomic	97.88
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.83
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.82
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.82
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.82
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.81
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.79
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.77
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.77
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.76
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.73
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.73
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.73
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.72
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.7
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.69
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.69
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.68
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.68
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.68
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.67
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.67
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.67
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.67
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.66
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.65
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.65
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.64
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.63
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.63
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.63
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.62
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.62
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.61
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.6
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.59
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.58
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.58
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.57
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.56
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.53
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.52
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.51
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.51
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.5
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.5
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.49
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.49
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.48
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.47
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.45
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.45
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.45
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.44
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.43
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.43
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.42
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.39
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.39
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.39
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.39
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.39
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.38
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.37
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.37
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.35
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.33
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.33
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.3
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.3
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.29
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.28
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.27
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.26
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.24
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.2
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.19
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.17
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.16
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.14
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.12
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.12
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.11
4dna_A	463	Probable glutathione reductase; structural genomic	97.1
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.05
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.03
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.03
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.03
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.97
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.95
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.94
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.94
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.92
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.89
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.88
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.87
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.87
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.85
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.83
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.83
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.82
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.81
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.78
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.77
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.68
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.55
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.48
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.1
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.08
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.07
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.01
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.95
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.89
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	95.65
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.6
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.59
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	95.52
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.42
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.08
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.07
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	95.01
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	94.98
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	94.93
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.89
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	94.88
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	94.86
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.71
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	94.67
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.61
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.49
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.25
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.21
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.29
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.21
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.16
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	93.13
3tl2_A	315	Malate dehydrogenase; center for structural genomi	93.04
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	93.02
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.88
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.83
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	92.74
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.63
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.62
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	92.54
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	92.49
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.48
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	92.46
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.46
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	92.45
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.43
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.33
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	92.32
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.31
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.28
3qha_A	296	Putative oxidoreductase; seattle structural genomi	92.17
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	92.16
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	92.11
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	91.9
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	91.88
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	91.81
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	91.79
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	91.74
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.68
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	91.67
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.64
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	91.6
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	91.53
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.5
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	91.49
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	91.48
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.47
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	91.43
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.38
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	91.28
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	91.27
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	91.24
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	91.23
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	91.14
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	91.01
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.0
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.84
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	90.8
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	90.61
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	90.37
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	90.35
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	90.35
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	90.3
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	90.21
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.14
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	90.0
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	89.91
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	89.88
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	89.86
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	89.86
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	89.83
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	89.75
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	89.69
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	89.68
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	89.67
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	89.64
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	89.64
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	89.55
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	89.48
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.37
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	89.35
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	89.31
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	89.25
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	89.2
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	89.15
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	89.12
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.02
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	88.94
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	88.91
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	88.9
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	88.85
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	88.77
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	88.75
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	88.75
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	88.68
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	88.65
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	88.57
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	88.57
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	88.56
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	88.53
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	88.48
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	88.48
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	88.47
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	88.46
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	88.4
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	88.37
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	88.33
4ezb_A	317	Uncharacterized conserved protein; structural geno	88.25
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	88.25
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	88.19
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	88.02
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	87.98
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	87.92
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	87.84
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	87.83
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	87.78
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	87.78
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	87.71
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	87.65
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.54
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.51
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	87.5
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	87.48
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	87.39
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	87.31
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	87.21
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	87.19
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	87.18
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	87.17
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	87.1
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	87.08
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	87.0
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	87.0
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	86.92
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	86.9
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	86.86
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	86.79
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	86.72
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	86.6
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	86.55
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	86.53
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	86.42
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	86.42
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	86.4
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	86.36
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	86.33
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	86.19
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	86.18
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	86.03
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	86.03
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	86.02
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	85.89
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	85.88
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	85.85
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	85.79
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	85.63
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	85.52
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	85.5
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	85.44
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	85.42
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	85.41
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	85.38
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	85.35
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	85.35
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	85.31
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	85.17
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	85.16
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	85.15
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	85.09
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	85.05
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	85.03
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	84.9
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	84.87
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	84.86
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	84.76
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	84.75
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	84.71
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	84.71
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	84.68
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	84.63
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	84.62
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	84.59
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	84.59
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	84.59
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	84.57
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	84.41
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	84.13
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	84.11
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	84.08
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	84.06
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	83.91
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	83.89
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	83.86
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	83.78
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	83.68
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	83.65
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	83.55
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	83.52
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	83.48
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	83.38
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	83.32
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	83.27
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	83.21
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	83.06
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	82.81
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	82.8

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=100.00  E-value=7.8e-49  Score=429.67  Aligned_cols=363  Identities=31%  Similarity=0.463  Sum_probs=297.7

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      ++.++||+||||||+||++|+.|+++|++|+||||.+.+...++++.++++++++|+++ |+.+++.+.+.+......+.
T Consensus         2 ~~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~~~~~   80 (535)
T 3ihg_A            2 NDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIG-GVADEVVRADDIRGTQGDFV   80 (535)
T ss_dssp             CCCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHT-TCHHHHHHSCCSSCTTSCCE
T ss_pred             CCccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHc-CCHHHHHhhCCCccccccee
Confidence            34568999999999999999999999999999999999988999999999999999999 99999999887766555554


Q ss_pred             --eeeCCCCCeeeeecCCCcc---ccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258          120 --YCTSVTGPILGSVDHMQPQ---DFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (572)
Q Consensus       120 --~~~~~~G~~~~~~~~~~~~---~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g  194 (572)
                        ++....|..+.+.......   .+ ...+|.....++|..|++.|.+.+.+.|+                   +++++
T Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~l~~~L~~~a~~~gv-------------------~i~~~  140 (535)
T 3ihg_A           81 IRLAESVRGEILRTVSESFDDMVAAT-EPCTPAGWAMLSQDKLEPILLAQARKHGG-------------------AIRFG  140 (535)
T ss_dssp             EEEESSSSSCEEEEEESCHHHHHHTT-GGGCSCCCBCCCHHHHHHHHHHHHHHTTC-------------------EEESS
T ss_pred             eeEEeccCCceeeecccccccccccc-ccCCCCcccccCHHHHHHHHHHHHHhCCC-------------------EEEeC
Confidence              6666777776643211110   01 11245556789999999999999998887                   99999


Q ss_pred             cEEEEEeeeCC----eEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCcccccc
Q 008258          195 HECVSVSATDQ----CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL  270 (572)
Q Consensus       195 ~~v~~v~~~~~----~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~  270 (572)
                      ++|++++++++    +|++++.   ++.+ +.+++||+||+|||++|.||+++|+++.+....+..+.+.+.. ++..+.
T Consensus       141 ~~v~~i~~~~~~~~~~v~v~~~---~~~~-~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~~-~~~~~~  215 (535)
T 3ihg_A          141 TRLLSFRQHDDDAGAGVTARLA---GPDG-EYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDA-DLSGIM  215 (535)
T ss_dssp             CEEEEEEEECGGGCSEEEEEEE---ETTE-EEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEEC-CGGGTS
T ss_pred             CEEEEEEECCCCccccEEEEEE---cCCC-eEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEec-cChhhc
Confidence            99999999998    9988887   3322 4589999999999999999999999988887776677666654 444332


Q ss_pred             ccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccce
Q 008258          271 LNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAE  349 (572)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~  349 (572)
                       ..++...+++++|+..+++++.+. .+.|.+.+++.+.. ....+++++.+.+.+++.++.....+++.....|++...
T Consensus       216 -~~~~~~~~~~~~p~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  293 (535)
T 3ihg_A          216 -EPGTTGWYYLHHPEFKGTFGPTDR-PDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKPELVDIQGWEMAAR  293 (535)
T ss_dssp             -CTTCCEEEEEECSSCEEEEEECSS-TTEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTCSSCCCEEEEEEEEEEEEE
T ss_pred             -cCCceEEEEEECCCceEEEEEecC-CCEEEEEEeeCccccCccccCCHHHHHHHHHHHhCCCCCceeEEEeeEeeeeEE
Confidence             344556777778887776665553 36677776654433 334567888899999999887666778888889999999


Q ss_pred             ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      ++++|.  +|||+|+|||||.++|++|||||+||+||++|+|+|+.++++.+.+.+|++|++||+|+++.+++.|.++++
T Consensus       294 ~a~~~~--~grv~LvGDAAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~p~a~~~~~~s~~~~~  371 (535)
T 3ihg_A          294 IAERWR--EGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQAGAGLLDTYEDERKVAAELVVAEALAIYA  371 (535)
T ss_dssp             EESCSE--ETTEEECTTTTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECccc--cCCEEEEecccccCCCccCCccccccccHHHHHHHHHHHhcCCCcHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            999998  599999999999999999999999999999999999999999889999999999999999999999999887


Q ss_pred             Hhc
Q 008258          430 AAM  432 (572)
Q Consensus       430 ~~~  432 (572)
                      ...
T Consensus       372 ~~~  374 (535)
T 3ihg_A          372 QRM  374 (535)
T ss_dssp             HHT
T ss_pred             hhc
Confidence            653

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=100.00  E-value=2.4e-48  Score=426.30  Aligned_cols=355  Identities=29%  Similarity=0.425  Sum_probs=269.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      .++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+.+++.+.+.+........+.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~~~~~~~  103 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRW-GVAKQIRTAGWPGDHPLDAAWV  103 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHT-TCHHHHHTSSCCTTSBCCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHc-CChHHHHhhcCCcccccceEEe
Confidence            468999999999999999999999999999999998888899999999999999999 9999999887766433334455


Q ss_pred             eCCCCCeeeeecCCCccc-cccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          122 TSVTGPILGSVDHMQPQD-FEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~-~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                      .+..|..+.+.+...... .....++.....++|..|+++|.+.+.+                     . |+++++|+++
T Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~---------------------~-v~~~~~v~~~  161 (549)
T 2r0c_A          104 TRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGE---------------------R-LRTRSRLDSF  161 (549)
T ss_dssp             SSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGG---------------------G-EECSEEEEEE
T ss_pred             ccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHH---------------------h-cccCcEEEEE
Confidence            556676655443211100 0001234445778999999999998855                     1 7899999999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEE
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (572)
                      ++++++|++++...++|  ++++++||+||+|||++|.||+++|+++.+....+.++.+.+..+++...+ ...+...++
T Consensus       162 ~~~~~~v~v~~~~~~~G--~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  238 (549)
T 2r0c_A          162 EQRDDHVRATITDLRTG--ATRAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLL-GERAALFFF  238 (549)
T ss_dssp             EECSSCEEEEEEETTTC--CEEEEEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEEEEEECTTHHHHH-GGGCCSEEE
T ss_pred             EEeCCEEEEEEEECCCC--CEEEEEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEEEEEECCchHHhc-CCCCceEEE
Confidence            99999999888743234  345799999999999999999999999888776666666666543332221 223456677


Q ss_pred             EEecC-ceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCC
Q 008258          281 IFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYN  359 (572)
Q Consensus       281 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~g  359 (572)
                      +++|+ ...++++.+. ...|.+.++.. ..   . ++++.+.+.+++.++.. ...++.....|.+..+++++|.  .|
T Consensus       239 ~~~p~~~~~~~~p~~~-~~~~~~~~~~~-~~---~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~--~g  309 (549)
T 2r0c_A          239 LMLSSSLRFPLRALDG-RGLYRLTVGVD-DA---S-KSTMDSFELVRRAVAFD-TEIEVLSDSEWHLTHRVADSFS--AG  309 (549)
T ss_dssp             EEEETTEEEEEEESSS-SSEEEEEEECS-TT---C-CSCCCHHHHHHHHBCSC-CCCEEEEEEEEEECCEECSCSE--ET
T ss_pred             EECCCCcEEEEEEECC-CcEEEEEecCC-CC---C-CCHHHHHHHHHHHhCCC-CceeEEEEecchhHhhhHHhhc--CC
Confidence            77777 4455555432 35676665421 11   1 45556778888888763 3456777778998889999997  59


Q ss_pred             cEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       360 rV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                      ||+|+|||||.|+|++|||||+||+||+||+|||+.+++|.+.+.+|++|++||+|+++.+++.+..+.+.+
T Consensus       310 rv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~a~~~lL~~Y~~eR~~~a~~~~~~s~~~~~~~  381 (549)
T 2r0c_A          310 RVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGPGLLATYEEERRPVAITSLEEANVNLRRT  381 (549)
T ss_dssp             TEEECGGGTEECCCGGGHHHHHHHHHHHHHHHHHHHHHHTCSCTTTTHHHHHHHHHHHHHHHHC--------
T ss_pred             cEEEEccccccCCCccCCccccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999988899999999999999999998887665443

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=100.00  E-value=3.6e-46  Score=404.12  Aligned_cols=337  Identities=22%  Similarity=0.270  Sum_probs=252.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+.+++.+. .+   +....+
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~-~~---~~~~~~   83 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQR-GILPRFGEV-ET---STQGHF   83 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTT-TCGGGGCSC-CB---CCEEEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHC-CCHHHHHhc-cc---cccccc
Confidence            5568999999999999999999999999999999999888899999999999999999 998877654 22   111111


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                          .+..   ++      +.....+.. .+.++|..|+++|.+.+.+.|+                   +|+++++|++
T Consensus        84 ----~~~~---~~------~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~  131 (500)
T 2qa1_A           84 ----GGLP---ID------FGVLEGAWQAAKTVPQSVTETHLEQWATGLGA-------------------DIRRGHEVLS  131 (500)
T ss_dssp             ----TTEE---EE------GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTC-------------------EEEETCEEEE
T ss_pred             ----ccee---cc------cccCCCCCCceeecCHHHHHHHHHHHHHHCCC-------------------EEECCcEEEE
Confidence                1111   11      000011121 3678999999999999998886                   8999999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (572)
                      +++++++|++++.   ++++ +++++||+||||||++|.||+++|+++.+......++...+...+        .+...+
T Consensus       132 i~~~~~~v~v~~~---~~~g-~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  199 (500)
T 2qa1_A          132 LTDDGAGVTVEVR---GPEG-KHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVE--------LQPRMI  199 (500)
T ss_dssp             EEEETTEEEEEEE---ETTE-EEEEEESEEEECCCTTCHHHHHTTCCCCEECCCCEEEEEEEESCC--------CCCEEE
T ss_pred             EEEcCCeEEEEEE---cCCC-CEEEEeCEEEECCCcchHHHHHcCCCcCCCccceEEEEEEEEeCC--------CCCceE
Confidence            9999999998887   3433 457999999999999999999999988876655444444433211        122245


Q ss_pred             EEEecCceEEEEEecCCCCeEEEEeecCCC--CCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceeccccccc
Q 008258          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPP--QQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC  357 (572)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~  357 (572)
                      +++.|+...++++.+  .+.+.+.+....+  .......+.+.+.+.+++.++......++.....|....+.+++|.  
T Consensus       200 ~~~~~~g~~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--  275 (500)
T 2qa1_A          200 GETLPGGMVMVGPLP--GGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIAHAEPVWVSAFGNATRQVTEYR--  275 (500)
T ss_dssp             EEEETTEEEEEEEET--TTEEEEEEEETTCCC-----CCCHHHHHHHHHHHHSCCCTTSEEEEEEEEECCEEECSCSE--
T ss_pred             EEECCCcEEEEEEcC--CCEEEEEEEcCCCCCccccCCCCHHHHHHHHHHhcCCCCCccceeEEEEeccCcEEccccc--
Confidence            566676554444443  3444444332121  1122446788888888888875443334444456777788899997  


Q ss_pred             CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (572)
Q Consensus       358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~  430 (572)
                      +|||+|+|||||.|+|++|||||+||+||+||+|||+.+++|.+.+.+|++|++||+|+++.++..+....+.
T Consensus       276 ~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~~~~~~~~s~~~~~l  348 (500)
T 2qa1_A          276 RGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTATEELLDSYHSERHAVGKRLLMNTQAQGLL  348 (500)
T ss_dssp             ETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEccccCCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999999999998889999999999999999998887655443

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=100.00  E-value=3e-46  Score=404.64  Aligned_cols=337  Identities=23%  Similarity=0.270  Sum_probs=253.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+++ |+.+++.+. .+   +....+
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~-~~---~~~~~~   84 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQR-GILPAFGPV-ET---STQGHF   84 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHT-TCGGGGCSC-CE---ESEEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHC-CCHHHHHhc-cc---ccccee
Confidence            4568999999999999999999999999999999999888899999999999999999 998877654 22   111111


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                          .+..   ++      +.....+.. ...++|..|+++|.+.+.+.|+                   +|++++++++
T Consensus        85 ----~~~~---~~------~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~  132 (499)
T 2qa2_A           85 ----GGRP---VD------FGVLEGAHYGVKAVPQSTTESVLEEWALGRGA-------------------ELLRGHTVRA  132 (499)
T ss_dssp             ----TTEE---EE------GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTC-------------------EEEESCEEEE
T ss_pred             ----ccee---cc------cccCCCCCCceEecCHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEE
Confidence                1111   11      110011222 3678999999999999998876                   8999999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (572)
                      +++++++|++++.   ++++ +++++||+||||||++|.||+++|+++.+......++...+...+        .+...+
T Consensus       133 i~~~~~~v~v~~~---~~~g-~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~v~~~~--------~~~~~~  200 (499)
T 2qa2_A          133 LTDEGDHVVVEVE---GPDG-PRSLTTRYVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCE--------ITPRPI  200 (499)
T ss_dssp             EEECSSCEEEEEE---CSSC-EEEEEEEEEEECCCTTCHHHHHTTCCCCEECCCCCEEEEEEESCC--------CCCEEE
T ss_pred             EEEeCCEEEEEEE---cCCC-cEEEEeCEEEEccCcccHHHHHcCCCCCCCCCccEEEEEEEEECC--------CCcceE
Confidence            9999999998887   4433 457999999999999999999999988876654444444433211        122245


Q ss_pred             EEEecCceEEEEEecCCCCeEEEEeecCCC--CCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceeccccccc
Q 008258          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPP--QQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC  357 (572)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~  357 (572)
                      +++.|+...++++.+  .+.+.+.+....+  .......+.+.+.+.+++.++......++.....|+...+.+++|.  
T Consensus       201 ~~~~~~g~~~~~P~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--  276 (499)
T 2qa2_A          201 GETVPLGMVMSAPLG--DGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISHGEPVWVSAFGDPARQVSAYR--  276 (499)
T ss_dssp             EEEETTEEEEEEECS--SSCEEEEEEETTCCCCCCSSSCCHHHHHHHHHHHHSCCCTTCEEEEEEEECCCEEECSCSE--
T ss_pred             EEECCCeEEEEEEcC--CCEEEEEEEecCCCCccccCCCCHHHHHHHHHHHhCCCCCccceeEEEEEeCCcEEccccc--
Confidence            566676544444443  3444444332111  1222456788888888888875443334444456777788899997  


Q ss_pred             CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258          358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (572)
Q Consensus       358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~  430 (572)
                      +|||+|+|||||.|+|++|||||+||+||+||+|+|+.+++|.+.+.+|++|++||+|+++.++..+....+.
T Consensus       277 ~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~~L~~Ye~eR~~~~~~~~~~s~~~~~l  349 (499)
T 2qa2_A          277 RGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGRAPAGLLDTYHEERHPVGRRLLMNTQAQGML  349 (499)
T ss_dssp             ETTEEECGGGTEEECCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999999999988889999999999999999998887655443

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=100.00  E-value=1.9e-45  Score=410.70  Aligned_cols=358  Identities=24%  Similarity=0.343  Sum_probs=249.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHh-----CCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTK-----LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLW  115 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~-----~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~  115 (572)
                      ..++||+||||||+||++|+.|++     +|++|+||||++.+...++++.++++++++|+++ |+++++.+.+.+...+
T Consensus         6 ~~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~l-Gl~~~l~~~~~~~~~~   84 (665)
T 1pn0_A            6 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNL-GLADKILSEANDMSTI   84 (665)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTT-TCHHHHHTTCBCCCEE
T ss_pred             CCCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHC-CCHHHHHHhccccceE
Confidence            446899999999999999999999     9999999999998888899999999999999999 9999998877665332


Q ss_pred             cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (572)
Q Consensus       116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~  195 (572)
                      .  .|..+..|.... ......  .....++.....++|..|+++|++.+.+.|.                .+++|++++
T Consensus        85 ~--~~~~~~~g~i~~-~~~~~~--~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~----------------~~v~v~~g~  143 (665)
T 1pn0_A           85 A--LYNPDENGHIRR-TDRIPD--TLPGISRYHQVVLHQGRIERRILDSIAEISD----------------TRIKVERPL  143 (665)
T ss_dssp             E--EEEECTTSCEEE-EEEEES--SCTTSCSSCCEECCHHHHHHHHHHHHHHHHT----------------TSSCEECSE
T ss_pred             E--EEeCCCCcceEe-ecccCc--ccCCCCCCeeEEeeHHHHHHHHHHHHHhcCC----------------CceEEEeCC
Confidence            2  233333343221 110000  0001233445679999999999999988760                013899999


Q ss_pred             EEEEEeeeC--------CeEEEEEEec---------------------------------------cCCceeeEEEEecE
Q 008258          196 ECVSVSATD--------QCINVIASFL---------------------------------------KEGKCTERNIQCNI  228 (572)
Q Consensus       196 ~v~~v~~~~--------~~v~v~~~~~---------------------------------------~~g~~~~~~i~ad~  228 (572)
                      +++++++++        ++|++++...                                       .+|  .+++++|||
T Consensus       144 ~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G--~~~~i~A~~  221 (665)
T 1pn0_A          144 IPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAG--EIETVHCKY  221 (665)
T ss_dssp             EEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTT--CEEEEEEEE
T ss_pred             EEEEEEecCcccccCCCCCEEEEEEecccccccccccccccccccccccccccccccccccccccCCCC--ceEEEEeCE
Confidence            999998875        5788887641                                       123  345799999


Q ss_pred             EEeecCCChhhhhhcCCccccccCcceEEEEEEec-CccccccccCCCceEEEEEe-cCceEEEEEecCCCCeEEEEeec
Q 008258          229 LIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDYLLNERPGMLFFIFN-TEAIGVLVAHDLKEGEFILQVPF  306 (572)
Q Consensus       229 vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  306 (572)
                      ||||||++|.||+++|+++.|......+..+.... .++.     . .....++.. +....++++.+....++++.++.
T Consensus       222 VVGADG~~S~VR~~lg~~~~g~~~~~~~~v~d~~~~~~~p-----~-~~~~~~~~~~~~g~~~~~P~~~~~~r~~~~~~~  295 (665)
T 1pn0_A          222 VIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFP-----D-IRSRCAIHSAESGSIMIIPRENNLVRFYVQLQA  295 (665)
T ss_dssp             EEECCCTTCHHHHHHTCCCEEEEEEEEEEEEEEEEECCCT-----T-TTSEEEEECSSSCEEEEEECSTTCEEEEEEECC
T ss_pred             EEeccCCCCHHHHhcCCCCCCCCccEEEEEEEEEECCCCC-----C-cceEEEEEeCCCceEEEEEcCCCEEEEEEEeCC
Confidence            99999999999999999887765443332222211 1111     1 111222222 34433444443222233333332


Q ss_pred             CC---CCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCc---cccceecccccccCCcEEEEecccccCCCCCCCCch
Q 008258          307 YP---PQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPW---VMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMN  380 (572)
Q Consensus       307 ~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w---~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n  380 (572)
                      ..   ........+++.+.+.+++.++...  +++..+.+|   ++..+++++|.. .|||+|+|||||.|+|++|||||
T Consensus       296 ~~~~~~~~~~~~~t~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~a~~~~~-~gRV~L~GDAAH~~~P~~GqG~N  372 (665)
T 1pn0_A          296 RAEKGGRVDRTKFTPEVVIANAKKIFHPYT--FDVQQLDWFTAYHIGQRVTEKFSK-DERVFIAGDACHTHSPKAGQGMN  372 (665)
T ss_dssp             ----------CCCCHHHHHHHHHHHHTTSC--CEEEEEEEEEEEEEEEEECSCSEE-TTTEEECGGGTEECCSTTCCHHH
T ss_pred             ccccccccCcCCCCHHHHHHHHHHHhCccc--CceeeEEEEEeeeccceehhhccc-CCCEEEEECccccCCCcccCCcc
Confidence            11   1112345678888888888776422  233333333   456778899962 49999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          381 TGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       381 ~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                      +||+||+||+|||+.+++|.+.+.+|++|++||+|+++.++..+....+.+
T Consensus       373 ~gi~DA~nLawkLa~vl~g~a~~~lL~tYe~eR~p~a~~~i~~s~~~~~l~  423 (665)
T 1pn0_A          373 TSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLF  423 (665)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988899999999999999999888776554433

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=100.00  E-value=4e-43  Score=391.28  Aligned_cols=351  Identities=23%  Similarity=0.330  Sum_probs=242.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~-~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      +.++||+||||||+||++|+.|++ +|++|+||||++.+...++++.++++++++|+++ |+.+++.+.+.+.....  .
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~l-Gl~~~~~~~~~~~~~~~--~  106 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAF-EFADSILKEACWINDVT--F  106 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHT-TCHHHHHHHSEEECEEE--E
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHc-CcHHHHHHhcccccceE--E
Confidence            346899999999999999999999 9999999999999888899999999999999999 99999887665543221  1


Q ss_pred             eeeC--CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258          120 YCTS--VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (572)
Q Consensus       120 ~~~~--~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v  197 (572)
                      +..+  ..|.... ......  .....++.....++|..|+++|.+.+.+.|+                 +++|+++++|
T Consensus       107 ~~~~~~~~g~~~~-~~~~~~--~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~-----------------~v~v~~~~~v  166 (639)
T 2dkh_A          107 WKPDPGQPGRIAR-HGRVQD--TEDGLSEFPHVILNQARVHDHYLERMRNSPS-----------------RLEPHYARRV  166 (639)
T ss_dssp             EEECTTSTTCEEE-EEEEES--SCTTSCSSCEEECCHHHHHHHHHHHHHHSTT-----------------CCCCBCSEEE
T ss_pred             ECCCCCCCcceEe-ecccCc--ccCCCCCCceEeeCHHHHHHHHHHHHHhCCC-----------------CcEEecCCEE
Confidence            2111  1233221 110000  0001123334678999999999999998763                 2378899999


Q ss_pred             EEEeeeCC----eEEEEEEec---cCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEec-Cccccc
Q 008258          198 VSVSATDQ----CINVIASFL---KEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDY  269 (572)
Q Consensus       198 ~~v~~~~~----~v~v~~~~~---~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~-~~l~~~  269 (572)
                      ++++++++    +|+|++...   .+|  .+++++||+||||||++|.||+++|+++.+......+..+.... .++.. 
T Consensus       167 ~~l~~~~~~~~~~v~v~~~~~~~~~~G--~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~p~-  243 (639)
T 2dkh_A          167 LDVKVDHGAADYPVTVTLERCDAAHAG--QIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPD-  243 (639)
T ss_dssp             EEEEECTTCSSCCEEEEEEECSGGGTT--CEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCEEEEEEEEEECCTT-
T ss_pred             EEEEECCCCCcCCEEEEEEeccccCCC--CeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceEEEEEEEEccCCCc-
Confidence            99998763    688877631   134  24579999999999999999999999887766544333222211 11111 


Q ss_pred             cccCCCceEEEEEecCceEEEEEecCCCC-eEEEEeecCC--CC--CCCCCCCHHHHHHHHHHHhCCCCCceeEEEec--
Q 008258          270 LLNERPGMLFFIFNTEAIGVLVAHDLKEG-EFILQVPFYP--PQ--QNLEDFSPEICEKLIFKLVGWELSDIDVIDIK--  342 (572)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~--  342 (572)
                         .+ . ...+..+....++++.+  .+ .+.+.+....  +.  ......+.+.+.+.+++.++..  .+++..+.  
T Consensus       244 ---~~-~-~~~~~~~~g~~~~~P~~--~~~~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~  314 (639)
T 2dkh_A          244 ---VR-Y-KVAIQSEQGNVLIIPRE--GGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLHPY--KLEVKNVPWW  314 (639)
T ss_dssp             ---TT-S-EEEEEETTEEEEEEECT--TSSCEEEEEECC-----------CCCHHHHHHHHHHHHTTS--CEEEEEEEEE
T ss_pred             ---cc-e-eEEEEcCCceEEEEEcC--CCcEEEEEEECCCcCcccccccCCCCHHHHHHHHHHHhCcc--cCcceeeeEE
Confidence               01 1 11222244333334433  23 3333322211  11  1223467788888888877642  23333333  


Q ss_pred             -Cccccceeccccc----------ccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHH
Q 008258          343 -PWVMHAEVAEKFL----------CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYET  411 (572)
Q Consensus       343 -~w~~~~~~a~~~~----------~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~  411 (572)
                       .|.+..+++++|.          ...|||+|+|||||.|+|++|||||+||+||+||+|||+.+++|.+.+.+|++|++
T Consensus       315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl~g~a~~~lL~~Ye~  394 (639)
T 2dkh_A          315 SVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQCAPELLHTYSS  394 (639)
T ss_dssp             EEECCCCEECSCSBSCCCSSCCTTSCCCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHHTTSBCGGGGHHHHH
T ss_pred             EecccccchhhhhhccccccccccCccCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence             3445667888886          01599999999999999999999999999999999999999999888999999999


Q ss_pred             hhhHHHHHhHHHHHH
Q 008258          412 ERKPIAEFNTALSVQ  426 (572)
Q Consensus       412 eR~~~a~~~~~~s~~  426 (572)
                      ||+|+++.+++.+..
T Consensus       395 eR~~~a~~~~~~s~~  409 (639)
T 2dkh_A          395 ERQVVAQQLIDFDRE  409 (639)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988876643

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=100.00  E-value=7.5e-43  Score=383.06  Aligned_cols=343  Identities=24%  Similarity=0.290  Sum_probs=245.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      .+++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+.+ |+++++...+.+....   . 
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~l-Gl~~~l~~~~~~~~~~---~-  121 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLR-GLLDRFLEGTQVAKGL---P-  121 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTT-TCHHHHTTSCCBCSBC---C-
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHc-CChHHHHhcCcccCCc---e-
Confidence            3568999999999999999999999999999999999888899999999999999999 9999998766443210   0 


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCc-cccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPV-SVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~-~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                         ..+.....+      ++.....+. ..+.++|..|++.|.+.+.+.|+                   +|+++++|++
T Consensus       122 ---~~~~~~~~~------~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv-------------------~i~~~~~v~~  173 (570)
T 3fmw_A          122 ---FAGIFTQGL------DFGLVDTRHPYTGLVPQSRTEALLAEHAREAGA-------------------EIPRGHEVTR  173 (570)
T ss_dssp             ---BTTBCTTCC------BGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTE-------------------ECCBSCEEEE
T ss_pred             ---eCCcccccc------cccccCCCCCeeEEeCHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEE
Confidence               011100001      011111111 23568999999999999988886                   8899999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (572)
                      +++++++|++++... +|   +.+++||+||+|||++|.||+.+|+.+.+....+.++...+......        ....
T Consensus       174 l~~~~~~v~v~~~~~-~G---~~~~~a~~vV~ADG~~S~vR~~lGi~~~~~~~~~~~~~~~v~~~~~~--------~~~~  241 (570)
T 3fmw_A          174 LRQDAEAVEVTVAGP-SG---PYPVRARYGVGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPERE--------VPRR  241 (570)
T ss_dssp             CCBCSSCEEEEEEET-TE---EEEEEESEEEECSCSSCHHHHHTTCCCCCCCCCEEEEEEECCCCSCS--------SCCC
T ss_pred             EEEcCCeEEEEEEeC-CC---cEEEEeCEEEEcCCCCchHHHHcCCCCccceeeeEEEEEEEEecCCC--------cceE
Confidence            999999999888532 33   14799999999999999999999999888776655554443222110        0011


Q ss_pred             EEEecCceEEEEEecCCCC---eEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEE-EecCccccceeccccc
Q 008258          280 FIFNTEAIGVLVAHDLKEG---EFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFL  355 (572)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-~~~~w~~~~~~a~~~~  355 (572)
                      +.+.+....++ ..+...+   .+++..+-.+........+.+.+.+.+++.++......+.. ....|++..+.+++|.
T Consensus       242 ~~~~~~G~~~~-~~P~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  320 (570)
T 3fmw_A          242 WERTPDGILVL-AFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYR  320 (570)
T ss_dssp             CCCCCSSCEEE-CCCC------CEEEEEESCC-----CCCCHHHHHHHTTSSSSCCCCCCSCCEEEEEECCCCEECSCSE
T ss_pred             EEecCCEEEEE-EeecCCCeEEEEEEEeCCCCccccccCCCHHHHHHHHHHHhhcccccceeeeeeEEeecccccccccc
Confidence            11223322222 0122223   34444332121223345677777777777766544333333 4456777888899997


Q ss_pred             ccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       356 ~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                        .|||+|+|||||.++|++|||+|+||+||.+|+|+|+.++++.+.+.+|++|+++|++++..++..+....+.+
T Consensus       321 --~grv~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~g~~~~~lL~~Ye~eR~~~~~~~~~~s~~~~~l~  394 (570)
T 3fmw_A          321 --SGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEELLDTYHDERHPVAERVLLNTRAQLALM  394 (570)
T ss_dssp             --ETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             --cCCEEEEEecceecCCCcCcCHhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              59999999999999999999999999999999999999999888899999999999999999988887655433

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=100.00  E-value=2.8e-42  Score=364.17  Aligned_cols=353  Identities=23%  Similarity=0.238  Sum_probs=211.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--CeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~--~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      ++|+||||||+||++|+.|+++|++|+||||++.+...+  .++.++++++++|+++ |+.+.+................
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~l-g~~~~~~~~~~~~~~~~~~~~~   80 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQEC-LPAENWLAFEEASRYIGGQSRF   80 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHH-SCHHHHHHHHHHCEEECCCCEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHc-CChHHHHHhhhhhcccCcceeE
Confidence            479999999999999999999999999999998886654  4677899999999999 8887764321111000000011


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                      .+..+..+........  ............+.|..|+++|.+.+.                      ..|++++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~R~~L~~~L~~~~~----------------------~~v~~~~~v~~~~  136 (412)
T 4hb9_A           81 YNERMRLLAVHGGISP--MAGKIISEQRLSISRTELKEILNKGLA----------------------NTIQWNKTFVRYE  136 (412)
T ss_dssp             ECTTSCEEEC----------------CEEEEEHHHHHHHHHTTCT----------------------TTEECSCCEEEEE
T ss_pred             ecCCcceecccCCccc--cccccccccceEeeHHHHHHHHHhhcc----------------------ceEEEEEEEEeee
Confidence            1122222211111100  000011223356788888888876441                      2789999999999


Q ss_pred             eeCC-eEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEec-Cccc----ccc-----
Q 008258          202 ATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLG----DYL-----  270 (572)
Q Consensus       202 ~~~~-~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~-~~l~----~~~-----  270 (572)
                      +.++ +|++++.   +|+    +++||+||||||++|.||++++............+...... ....    ...     
T Consensus       137 ~~~~~~v~v~~~---dG~----~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (412)
T 4hb9_A          137 HIENGGIKIFFA---DGS----HENVDVLVGADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTALLPQNFRDGTP  209 (412)
T ss_dssp             ECTTSCEEEEET---TSC----EEEESEEEECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHHHSCGGGTSSCC
T ss_pred             EcCCCeEEEEEC---CCC----EEEeeEEEECCCCCcchHHHhCCCccccccceeEEEEEEecchhhhcchhhhhccCCc
Confidence            8655 5777664   665    68999999999999999999976554432222222111111 0000    000     


Q ss_pred             ---ccCCCceEEE--EEecCceEEEEEecCCCCeEEEEe---ecCCCCCCCCCCCHHHHHHHHHHHh-CCCCCceeEE--
Q 008258          271 ---LNERPGMLFF--IFNTEAIGVLVAHDLKEGEFILQV---PFYPPQQNLEDFSPEICEKLIFKLV-GWELSDIDVI--  339 (572)
Q Consensus       271 ---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~i~--  339 (572)
                         ....+...++  +..|....+... ......+..++   ..........+++.+.+.+.+++.+ ++.+.-.+++  
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~li~~  288 (412)
T 4hb9_A          210 NSIVPKSPDWLFISMWRAPVNIHVEAS-LAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRMISWDPSLHTLVQQ  288 (412)
T ss_dssp             EEECCSSSEEEEEEEEEEESCTTSCGG-GCCEEEEEEEEEEEEGGGSCTTGGGCCHHHHHHHHHHHTTTSCHHHHHHHHT
T ss_pred             ceEeecCCCcceeeeeecCCceeEEEe-ccCCCceEEEEEecccccccccccccchHHHHHHHHHHhccCChHHHHHHHh
Confidence               0111111111  111110000000 00112222221   1111122334566666666666544 2221100000  


Q ss_pred             ----EecCcccc-ceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCc-hhhHhhHHHhh
Q 008258          340 ----DIKPWVMH-AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP-ASILNTYETER  413 (572)
Q Consensus       340 ----~~~~w~~~-~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~-~~~L~~Y~~eR  413 (572)
                          ...+|... .....+|.  +|||+|+|||||.|+|++|||||+||+||++|+|+|+.+.++... +.+|++|+++|
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~~~~~~~aL~~Ye~~R  366 (412)
T 4hb9_A          289 SDMENISPLHLRSMPHLLPWK--SSTVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASGHEELVKAISDYEQQM  366 (412)
T ss_dssp             SCTTCCEEEEEEECCCCCCCC--CCSEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             cccceeccchhcccccccccc--ccCEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence                11122221 12345565  699999999999999999999999999999999999999877654 88999999999


Q ss_pred             hHHHHHhHHHHHHHHHHh
Q 008258          414 KPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       414 ~~~a~~~~~~s~~~~~~~  431 (572)
                      +|+++.+++.|.++.+..
T Consensus       367 ~~~~~~~~~~s~~~~~~~  384 (412)
T 4hb9_A          367 RAYANEIVGISLRSAQNA  384 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998876543

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=100.00  E-value=2.6e-38  Score=334.40  Aligned_cols=340  Identities=16%  Similarity=0.163  Sum_probs=222.2

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      ++.++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+.+ |+++++...+.+...+   .
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~l-g~~~~~~~~~~~~~~~---~   95 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHL-GMGDIMETFGGPLRRM---A   95 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHT-TCHHHHHHHSCCCCEE---E
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHC-CCHHHHHhhcCCCcce---E
Confidence            35568999999999999999999999999999999998888889999999999999999 9999998877665332   2


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                      +.....|+.+...+...   +.. ..+...+.++|..|++.|.+.+.+  +                   +|+++++|++
T Consensus        96 ~~~~~~g~~~~~~~~~~---~~~-~~~~~~~~i~r~~l~~~L~~~~~~--~-------------------~i~~~~~v~~  150 (407)
T 3rp8_A           96 YRDFRSGENMTQFSLAP---LIE-RTGSRPCPVSRAELQREMLDYWGR--D-------------------SVQFGKRVTR  150 (407)
T ss_dssp             EEETTTCCEEEEEECHH---HHH-HHSSCCEEEEHHHHHHHHHHHHCG--G-------------------GEEESCCEEE
T ss_pred             EEECCCCCEeEEecchh---hhh-hcCCceEEEEHHHHHHHHHHhCCc--C-------------------EEEECCEEEE
Confidence            22223366555443210   000 012234678999999999998865  3                   8899999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhc-CCccccccCcceEEEEEEecCccccccccCCCceE
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML  278 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~l-g~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  278 (572)
                      ++++++++++++.   +|+    +++||+||+|||.+|.||+.+ +............+...+....     ........
T Consensus       151 i~~~~~~v~v~~~---~g~----~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  218 (407)
T 3rp8_A          151 CEEDADGVTVWFT---DGS----SASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDE-----ALAPGDQW  218 (407)
T ss_dssp             EEEETTEEEEEET---TSC----EEEESEEEECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCT-----TTCCTTEE
T ss_pred             EEecCCcEEEEEc---CCC----EEeeCEEEECCCcChHHHHHhcCCCCCCcccCcEEEEEEEeccc-----ccCCCCce
Confidence            9999999887765   554    689999999999999999998 6542211110111111111110     01122333


Q ss_pred             EEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhC-CCC---------CceeEEEecCccccc
Q 008258          279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG-WEL---------SDIDVIDIKPWVMHA  348 (572)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~---------~~~~i~~~~~w~~~~  348 (572)
                      ..++.++...++++..  .+.+.+.+....+...  ..+++...+.+.+.+. +.+         ..........+++. 
T Consensus       219 ~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  293 (407)
T 3rp8_A          219 TTFVGEGKQVSLMPVS--AGRFYFFFDVPLPAGL--AEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIE-  293 (407)
T ss_dssp             EEEEETTEEEEEEEET--TTEEEEEEEEECCTTC--SCCTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCEEEEEEECC-
T ss_pred             EEEECCCcEEEEEEcC--CCeEEEEEEeCCCcCC--CCCchhHHHHHHHHhcCCChHHHHHHHcCCccceeEEeeEecC-
Confidence            3444565544444443  3554444333222211  1111222233333222 111         00011000111111 


Q ss_pred             eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258          349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF  428 (572)
Q Consensus       349 ~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~  428 (572)
                       ..++|.  .+||+|+|||||.++|++|||+|+||+||.+|+|+|+..  + ..+.+|+.|+++|++++..++..+....
T Consensus       294 -~~~~~~--~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~--~-~~~~~l~~Y~~~r~~~~~~~~~~s~~~~  367 (407)
T 3rp8_A          294 -PFSRLV--RGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT--R-DIAAALREYEAQRCDRVRDLVLKARKRC  367 (407)
T ss_dssp             -CCSCCE--ETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCcee--cCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             126675  599999999999999999999999999999999999852  3 6788999999999999999999888776


Q ss_pred             HHh
Q 008258          429 RAA  431 (572)
Q Consensus       429 ~~~  431 (572)
                      +..
T Consensus       368 ~~~  370 (407)
T 3rp8_A          368 DIT  370 (407)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            554

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=100.00  E-value=5.7e-37  Score=324.51  Aligned_cols=343  Identities=20%  Similarity=0.200  Sum_probs=218.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      .++||+||||||+||++|+.|+++|++ |+||||.+.+...+++..++++++++|+.+ |+.+.+...+.+...+   .+
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~l-g~~~~l~~~~~~~~~~---~~   78 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAEL-GLGPALAATAIPTHEL---RY   78 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHT-TCHHHHHHHSEEECEE---EE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHC-CChHHHHhhCCCcceE---EE
Confidence            458999999999999999999999999 999999988877888999999999999999 9999998776554321   22


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHh-cCceeeccCCcccccccccccceEEeccEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                       .+..|..+.........     ........++|..|++.|.+.+.+ .|.                  ++++++++|++
T Consensus        79 -~~~~g~~~~~~~~~~~~-----~~~~~~~~i~r~~l~~~L~~~~~~~~g~------------------~~v~~~~~v~~  134 (410)
T 3c96_A           79 -IDQSGATVWSEPRGVEA-----GNAYPQYSIHRGELQMILLAAVRERLGQ------------------QAVRTGLGVER  134 (410)
T ss_dssp             -ECTTSCEEEEEECGGGG-----TCSSCEEEEEHHHHHHHHHHHHHHHHCT------------------TSEEESEEEEE
T ss_pred             -EcCCCCEEeeccCCccc-----cCCCCeeeeeHHHHHHHHHHHHHhhCCC------------------cEEEECCEEEE
Confidence             23345544332110000     012223568899999999999876 352                  37999999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (572)
                      +++ ++++++++...++|+  +.+++||+||+|||++|.||+.++..... ..+.+...+..... ..    ...++..+
T Consensus       135 i~~-~~~v~v~~~~~~~g~--~~~~~ad~vV~AdG~~S~vR~~l~~~~~~-~~~~g~~~~~~~~~-~~----~~~~~~~~  205 (410)
T 3c96_A          135 IEE-RDGRVLIGARDGHGK--PQALGADVLVGADGIHSAVRAHLHPDQRP-LSHGGITMWRGVTE-FD----RFLDGKTM  205 (410)
T ss_dssp             EEE-ETTEEEEEEEETTSC--EEEEEESEEEECCCTTCHHHHHHCTTCCC-CEEEEEEEEEEEEE-ES----CCTTSSEE
T ss_pred             Eec-CCccEEEEecCCCCC--ceEEecCEEEECCCccchhHHHhcCCCCC-CCcCCeeEEEeecc-cc----cccCCCeE
Confidence            998 778888876322342  34789999999999999999998643211 11211111111110 00    01122223


Q ss_pred             EEEec--CceEEEEEecC-----CCCeEEEEeecCCC----CCCCCC----CCHHHHHHHHHHHhCCCCCce---eE---
Q 008258          280 FIFNT--EAIGVLVAHDL-----KEGEFILQVPFYPP----QQNLED----FSPEICEKLIFKLVGWELSDI---DV---  338 (572)
Q Consensus       280 ~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~l~~~~~~~~~~~---~i---  338 (572)
                      +++.+  ....++.+...     ....+.+.+....+    ......    .+.+.   ++..+.++.....   ++   
T Consensus       206 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~i~~  282 (410)
T 3c96_A          206 IVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLED---VLPFFADWDLGWFDIRDLLTR  282 (410)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCHHH---HHHHHTTCCBTTBCHHHHHHT
T ss_pred             EEecCCCCcEEEEEecCCcccCCCCcEEEEEEEecCcccccCCCccccCCCCCHHH---HHHHhcCCCCchhHHHHHHhc
Confidence            33332  22333333221     11222232221100    001111    22333   3333323221100   00   


Q ss_pred             -EEecCccccc-eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHH
Q 008258          339 -IDIKPWVMHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPI  416 (572)
Q Consensus       339 -~~~~~w~~~~-~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~  416 (572)
                       .....|++.. ...++|.  .|||+|+|||||.++|++|||+|+||+||.+|+|+|+..   .+.+.+|++|+++|+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~--~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~---~~~~~~L~~Ye~~r~~~  357 (410)
T 3c96_A          283 NQLILQYPMVDRDPLPHWG--RGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARN---ADVAAALREYEEARRPT  357 (410)
T ss_dssp             CSEEEEEEEEECCCCSCCC--BTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHHH
T ss_pred             CcccceeecccCCCccccc--cCCEEEEecccCCCCCccchhHHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHH
Confidence             0112333322 2356776  599999999999999999999999999999999999863   35688999999999999


Q ss_pred             HHHhHHHHHHHHH
Q 008258          417 AEFNTALSVQNFR  429 (572)
Q Consensus       417 a~~~~~~s~~~~~  429 (572)
                      +..++..+.+.+.
T Consensus       358 ~~~~~~~s~~~~~  370 (410)
T 3c96_A          358 ANKIILANREREK  370 (410)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHH
Confidence            9998888875543

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4.4e-38  Score=331.74  Aligned_cols=341  Identities=20%  Similarity=0.221  Sum_probs=230.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+.+ |+.+++...+.+...+.   +
T Consensus         4 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~~~---~   79 (399)
T 2x3n_A            4 DNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAA-GLLAEVTRRGGRVRHEL---E   79 (399)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHT-TCHHHHHHTTCEEECEE---E
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHc-CcHHHHHHhCCCcceeE---E
Confidence            3458999999999999999999999999999999988877889999999999999999 99999887665543221   1


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                       .+..|.....++....      ..+.....++|..|.+.|.+.+.+. |+                   +++++++|++
T Consensus        80 -~~~~g~~~~~~~~~~~------~~~~~~~~~~r~~l~~~L~~~~~~~~gv-------------------~i~~~~~v~~  133 (399)
T 2x3n_A           80 -VYHDGELLRYFNYSSV------DARGYFILMPCESLRRLVLEKIDGEATV-------------------EMLFETRIEA  133 (399)
T ss_dssp             -EEETTEEEEEEETTSS------CGGGCEEECCHHHHHHHHHHHHTTCTTE-------------------EEECSCCEEE
T ss_pred             -EeCCCCEEEecchHHh------cccCccccccHHHHHHHHHHHhhhcCCc-------------------EEEcCCEEEE
Confidence             1223443333321110      0112235689999999999999887 65                   8999999999


Q ss_pred             EeeeCCeE--EEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccc--cCcceEEEEEEecCccccccccCCC
Q 008258          200 VSATDQCI--NVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE--KDLQKLVSVHFLSKDLGDYLLNERP  275 (572)
Q Consensus       200 v~~~~~~v--~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~--~~~~~~~~~~~~~~~l~~~~~~~~~  275 (572)
                      ++++++++  ++++.   +|+    ++++|+||+|||.+|.||+.+++...+.  ...+.+..+..... .. .  + ..
T Consensus       134 i~~~~~~v~g~v~~~---~g~----~~~ad~vV~AdG~~s~vr~~lg~~~~~~~p~~~~~~~~~~~~~~-~~-~--~-~~  201 (399)
T 2x3n_A          134 VQRDERHAIDQVRLN---DGR----VLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAP-CV-A--E-RN  201 (399)
T ss_dssp             EEECTTSCEEEEEET---TSC----EEEEEEEEECCCTTCHHHHHTSCCCCCCCCCSSCEEEEEEECCH-HH-H--H-CE
T ss_pred             EEEcCCceEEEEEEC---CCC----EEECCEEEECCCCChHHHHHhCCCccccCCCCCCceEEEEEEec-CC-C--C-Cc
Confidence            99988887  66654   553    6899999999999999999998765543  22220121111111 00 0  1 11


Q ss_pred             ceEEEEEec-CceEEEEEecCCCCeEEEEeecCCCC-CCC-CCCCHHHHHHHHHHHhCCCC--CceeEE---EecCcccc
Q 008258          276 GMLFFIFNT-EAIGVLVAHDLKEGEFILQVPFYPPQ-QNL-EDFSPEICEKLIFKLVGWEL--SDIDVI---DIKPWVMH  347 (572)
Q Consensus       276 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~--~~~~i~---~~~~w~~~  347 (572)
                        . .++.| +...++++.+.  +.+.+.+.+.+.. ... ...+.+.+.+.++.+ +...  ..++..   ....|++.
T Consensus       202 --~-~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  275 (399)
T 2x3n_A          202 --R-LYVDSQGGLAYFYPIGF--DRARLVVSFPREEARELMADTRGESLRRRLQRF-VGDESAEAIAAVTGTSRFKGIPI  275 (399)
T ss_dssp             --E-EEECTTSCEEEEEEETT--TEEEEEEECCHHHHHHHHHSTTSHHHHHHHHTT-CCGGGHHHHHTCCCSTTCEECCC
T ss_pred             --c-EEEcCCCcEEEEEEcCC--CEEEEEEEeCccccccccccCCHHHHHHHHhhc-CCcchhhHHhcCCccceEEechh
Confidence              2 44556 55444444432  5565555221110 000 012334444454422 2211  111111   12345555


Q ss_pred             c-eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-CCCchhhHhhHHHhhhHHHHHhHHHHH
Q 008258          348 A-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPIAEFNTALSV  425 (572)
Q Consensus       348 ~-~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g~~~~~~L~~Y~~eR~~~a~~~~~~s~  425 (572)
                      . ...++|.  .|||+|+|||||.++|++|||+|+||+||.+|+|+|+..++ +.+.+.+|++|+++|++++..++..+.
T Consensus       276 ~~~~~~~~~--~~rv~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~  353 (399)
T 2x3n_A          276 GYLNLDRYW--ADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDALAGYQAERFPVNQAIVSYGH  353 (399)
T ss_dssp             CCEECSCSE--ETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccc--cCcEEEEechhccCCCcccccHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhccHHHHHHHHHH
Confidence            5 6677786  59999999999999999999999999999999999999875 445688999999999999999888887


Q ss_pred             HHHHHh
Q 008258          426 QNFRAA  431 (572)
Q Consensus       426 ~~~~~~  431 (572)
                      ...+..
T Consensus       354 ~~~~~~  359 (399)
T 2x3n_A          354 ALATSL  359 (399)
T ss_dssp             HHHHHT
T ss_pred             Hhhhhh
Confidence            665443

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=100.00  E-value=1.9e-37  Score=326.18  Aligned_cols=338  Identities=18%  Similarity=0.249  Sum_probs=219.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~--~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ++||+||||||+||++|+.|++.|++|+||||.+.+  ....++..++++++++|+.+ |+++++.+.+.+...+   .+
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~l-g~~~~~~~~~~~~~~~---~~   77 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GVDRRMARDGLVHEGV---EI   77 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHT-TCCHHHHHHCEEESCE---EE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHc-CCcHHHHhcCCccceE---EE
Confidence            479999999999999999999999999999998753  23456667999999999999 9999988765544322   11


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                      ..  .+.. ...+      +.....+.....++|..+.+.|++.+.+.|+                   +++++++|+++
T Consensus        78 ~~--~~~~-~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-------------------~i~~~~~v~~i  129 (394)
T 1k0i_A           78 AF--AGQR-RRID------LKRLSGGKTVTVYGQTEVTRDLMEAREACGA-------------------TTVYQAAEVRL  129 (394)
T ss_dssp             EE--TTEE-EEEC------HHHHHTSCCEEECCHHHHHHHHHHHHHHTTC-------------------EEESSCEEEEE
T ss_pred             EE--CCce-EEec------cccccCCCceEEechHHHHHHHHHHHHhcCC-------------------eEEeceeEEEE
Confidence            11  1211 1111      1100012224567888999999999988776                   89999999999


Q ss_pred             eeeC-CeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEe--cCccccccccCCCce
Q 008258          201 SATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFL--SKDLGDYLLNERPGM  277 (572)
Q Consensus       201 ~~~~-~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~--~~~l~~~~~~~~~~~  277 (572)
                      ++++ +++.|++.  ++|+  +.+++||+||+|||.+|.||+.++.....  .+.......+.  ..+..    ...+..
T Consensus       130 ~~~~~~~~~v~~~--~~g~--~~~~~a~~vV~AdG~~S~vr~~l~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~  199 (394)
T 1k0i_A          130 HDLQGERPYVTFE--RDGE--RLRLDCDYIAGCDGFHGISRQSIPAERLK--VFERVYPFGWLGLLADTP----PVSHEL  199 (394)
T ss_dssp             ECTTSSSCEEEEE--ETTE--EEEEECSEEEECCCTTCSTGGGSCGGGCE--EEEEEEEEEEEEEEESSC----CSCSSC
T ss_pred             EEecCCceEEEEe--cCCc--EEEEEeCEEEECCCCCcHHHHhcCccccc--cccccccceeEEEecCCC----CCccce
Confidence            8864 56777773  2553  34689999999999999999999754211  11111111110  00100    111222


Q ss_pred             EEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCC----CCCceeEEEecCccccceeccc
Q 008258          278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGW----ELSDIDVIDIKPWVMHAEVAEK  353 (572)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~i~~~~~w~~~~~~a~~  353 (572)
                       .+...+....++...+.....|.+..+  +. .....++++...+.+.+.++.    ............|++....+++
T Consensus       200 -~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (394)
T 1k0i_A          200 -IYANHPRGFALCSQRSATRSQYYVQVP--LS-EKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEP  275 (394)
T ss_dssp             -EEECCTTCCEEEEEEETTEEEEEEEEC--TT-CCGGGCCHHHHHHHHHHTSCHHHHHHCCCCCEEEEEEEEEEEEEEEC
T ss_pred             -EEEEcCCceEEEEecCCCcEEEEEEeC--CC-CCccccCHHHHHHHHHHhhCcccccccccCcceeeEEEEhhhhhccc
Confidence             222234444433333222122333332  22 223345665555555444322    1111122222334455556677


Q ss_pred             ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      |.  .|||+|+|||||.++|++|||+|+||+||.+|+|+|+..+++. .+.+|++|+++|++++..++..+.....
T Consensus       276 ~~--~grv~LvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~~~~~-~~~~L~~Y~~~r~~~~~~~~~~s~~~~~  348 (394)
T 1k0i_A          276 MQ--HGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREG-RGELLERYSAICLRRIWKAERFSWWMTS  348 (394)
T ss_dssp             SE--ETTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHC-CGGGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc--cCCEEEEechhhcCCCcccchHHHHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76  5999999999999999999999999999999999999876543 4689999999999999988887765443

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=100.00  E-value=1.6e-37  Score=327.21  Aligned_cols=335  Identities=16%  Similarity=0.156  Sum_probs=213.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~-~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+ ...+++..++++++++|+.+ |+.+  ...+.+...   ..
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~-g~~~--~~~~~~~~~---~~   76 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQ-GVEL--DSISVPSSS---ME   76 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHT-TCCG--GGTCBCCCE---EE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHc-CCcc--ccccccccc---eE
Confidence            44689999999999999999999999999999998875 44567888999999999999 8876  333333321   22


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                      +.....|..+.....           +  ...+++..|.+.|.+.+  .|                   ++++++++|++
T Consensus        77 ~~~~~~g~~~~~~~~-----------~--~~~~~~~~l~~~L~~~~--~~-------------------~~i~~~~~v~~  122 (397)
T 2vou_A           77 YVDALTGERVGSVPA-----------D--WRFTSYDSIYGGLYELF--GP-------------------ERYHTSKCLVG  122 (397)
T ss_dssp             EEETTTCCEEEEEEC-----------C--CCEEEHHHHHHHHHHHH--CS-------------------TTEETTCCEEE
T ss_pred             EEecCCCCccccccC-----------c--ccccCHHHHHHHHHHhC--CC-------------------cEEEcCCEEEE
Confidence            222224554432211           1  12345678888887765  23                   38999999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEec--CccccccccCCCce
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS--KDLGDYLLNERPGM  277 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~--~~l~~~~~~~~~~~  277 (572)
                      ++++++++++++.   +|+    ++++|+||+|||.+|.||+.++ +..  ..+.....+....  .++...........
T Consensus       123 i~~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~vr~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (397)
T 2vou_A          123 LSQDSETVQMRFS---DGT----KAEANWVIGADGGASVVRKRLL-GIE--PTYAGYVTWRGVLQPGEVADDVWNYFNDK  192 (397)
T ss_dssp             EEECSSCEEEEET---TSC----EEEESEEEECCCTTCHHHHHHH-CCC--CEEEEEEEEEEEECTTSSCHHHHHHHTTE
T ss_pred             EEecCCEEEEEEC---CCC----EEECCEEEECCCcchhHHHHhc-cCC--CCccceEEEEEEeeccccChhhhhhhcCc
Confidence            9999888887764   553    6899999999999999999998 542  2222222111111  11110000000012


Q ss_pred             EEEEEecCceEEEEEecCCCC------eEEEEeecCCCC--C----CC-----------CCCCHHHHHHHHHHHh-CCCC
Q 008258          278 LFFIFNTEAIGVLVAHDLKEG------EFILQVPFYPPQ--Q----NL-----------EDFSPEICEKLIFKLV-GWEL  333 (572)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~----~~-----------~~~~~~~~~~~l~~~~-~~~~  333 (572)
                      ..++..++....+.+.+...+      .|++..+.....  .    ..           ...+++.+.++++.+. .+.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (397)
T 2vou_A          193 FTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKP  272 (397)
T ss_dssp             EEEEEETTEEEEEEEECCSSTTSCCEEEEEEEEECCTTHHHHHHTBCTTSCBCSSEECGGGCCHHHHHHHHHHHTTSCHH
T ss_pred             eeEEecCCCEEEEEECCCCCCccceeEEEEEEecCCCccchhhhccCCCCcccccccCcccCCHHHHHHHHHHHHhhChH
Confidence            233334543333333332212      244444321100  0    00           0013444444443332 1211


Q ss_pred             CceeEE----EecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhH
Q 008258          334 SDIDVI----DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTY  409 (572)
Q Consensus       334 ~~~~i~----~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y  409 (572)
                       -.+++    ....|++....+++|.  .|||+|+|||||.++|++|||+|+||+||.+|+++|..   +.+.+.+|++|
T Consensus       273 -~~~~~~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~---~~~~~~~L~~Y  346 (397)
T 2vou_A          273 -FRDLVLNASSPFVTVVADATVDRMV--HGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK---NHDLRGSLQSW  346 (397)
T ss_dssp             -HHHHHHHCSSCEEEEEEEBCCSCSE--ETTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH---CSCHHHHHHHH
T ss_pred             -HHHHHhccCCcceeeeeeecCCcee--cCcEEEEeccccccCCcchhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHH
Confidence             00100    0112444444567786  59999999999999999999999999999999999974   34567899999


Q ss_pred             HHhhhHHHHHhHHHHHHHHHHh
Q 008258          410 ETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       410 ~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                      +++|++++..++..|....+..
T Consensus       347 e~~R~~~~~~~~~~s~~~~~~~  368 (397)
T 2vou_A          347 ETRQLQQGHAYLNKVKKMASRL  368 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888776655

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=100.00  E-value=3.1e-36  Score=317.55  Aligned_cols=342  Identities=18%  Similarity=0.236  Sum_probs=212.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--CCeeeeCh-hHHHHHHhhcchHHHHHhcCCCcccccc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--PQAHFINN-RYALVFRKLDGLAEEIERSQPPVDLWRK  117 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~--~~a~~l~~-rt~e~l~~l~Gl~~~l~~~~~~~~~~~~  117 (572)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+...  +.+..+++ +++++|+++ |+++++...+.+...   
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~---   99 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKA-GLLQTYYDLALPMGV---   99 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHT-TCHHHHHHHCBCCCE---
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhc-ChHHHHHHhhcccce---
Confidence            34589999999999999999999999999999999876443  33444554 579999999 999999876654432   


Q ss_pred             eeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258          118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (572)
Q Consensus       118 ~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v  197 (572)
                       .+ .+..|..+....  .+.     ........++|..|++.|.+.+.+                     .+|+++++|
T Consensus       100 -~~-~~~~g~~~~~~~--~~~-----~~~~~~~~i~r~~l~~~L~~~~~~---------------------~~i~~~~~v  149 (398)
T 2xdo_A          100 -NI-ADEKGNILSTKN--VKP-----ENRFDNPEINRNDLRAILLNSLEN---------------------DTVIWDRKL  149 (398)
T ss_dssp             -EE-ECSSSEEEEECC--CGG-----GTTSSCCEECHHHHHHHHHHTSCT---------------------TSEEESCCE
T ss_pred             -EE-ECCCCCchhhcc--ccc-----cCCCCCceECHHHHHHHHHhhcCC---------------------CEEEECCEE
Confidence             11 123454443220  000     001112357889999988876532                     278999999


Q ss_pred             EEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCc--c--ccccccC
Q 008258          198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKD--L--GDYLLNE  273 (572)
Q Consensus       198 ~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~--l--~~~~~~~  273 (572)
                      ++++++++++++++.   +|+    +++||+||+|||.+|.||+.++...   ..+.....+......  .  ..+....
T Consensus       150 ~~i~~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~vR~~l~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~  219 (398)
T 2xdo_A          150 VMLEPGKKKWTLTFE---NKP----SETADLVILANGGMSKVRKFVTDTE---VEETGTFNIQADIHQPEINCPGFFQLC  219 (398)
T ss_dssp             EEEEECSSSEEEEET---TSC----CEEESEEEECSCTTCSCCTTTCCCC---CEEEEEEEEEEEESSHHHHSHHHHHHH
T ss_pred             EEEEECCCEEEEEEC---CCc----EEecCEEEECCCcchhHHhhccCCC---ceEcceEEEEEEeCchhccCchhHhhc
Confidence            999998888877764   553    5899999999999999999986321   111111111111111  0  0000000


Q ss_pred             CCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCC-----CCCCHHHHHHHHHHHhC-CCCCceeEE----EecC
Q 008258          274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNL-----EDFSPEICEKLIFKLVG-WELSDIDVI----DIKP  343 (572)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~-~~~~~~~i~----~~~~  343 (572)
                      ..+. .+++.|....+..+.  ..+.+.+.+.+..+....     ...+++...+.+.+.+. +.+.-.+++    ....
T Consensus       220 ~~g~-~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  296 (398)
T 2xdo_A          220 NGNR-LMASHQGNLLFANPN--NNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVG  296 (398)
T ss_dssp             TTSE-EEEEETTEEEEEEEE--ETTEEEEEEEEECCTTC---CCSCTTCHHHHHHHHHHHTTTSCHHHHHHHHHCSCCEE
T ss_pred             CCce-EEEecCCCeEEEEeC--CCCcEEEEEEEecCcccccccccCcCCHHHHHHHHHHHHcCCChHHHHHHhCccccee
Confidence            1222 334455533322222  234444443322222111     11244444444444332 211000000    0111


Q ss_pred             ccccc-eecccccccCC--cEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCC-chhhHhhHHHhhhHHHHH
Q 008258          344 WVMHA-EVAEKFLCCYN--QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTYETERKPIAEF  419 (572)
Q Consensus       344 w~~~~-~~a~~~~~~~g--rV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~-~~~~L~~Y~~eR~~~a~~  419 (572)
                      |.+.. ....+|.. .+  ||+|+|||||.++|++|||+|+||+||.+|+|+|+..  +.+ .+.+|++|+++|++++..
T Consensus       297 ~~~~~~~~~~~~~~-~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~~~L~~Y~~~r~~~~~~  373 (398)
T 2xdo_A          297 LATRIFPLEKPWKS-KRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG--KFNSIEEAVKNYEQQMFIYGKE  373 (398)
T ss_dssp             EEEEECCCCSCCCS-CCSSCEEECTHHHHCCCCTTSCSHHHHHHHHHHHHHHHHSC--CSSSHHHHHHHHHHHHHHHHHH
T ss_pred             eeeEeccCCCCccc-CCCccEEEEeehhccCCCccCccHHHHHHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHHHHHH
Confidence            22211 12235642 35  9999999999999999999999999999999999864  223 578999999999999999


Q ss_pred             hHHHHHHHHHHhc
Q 008258          420 NTALSVQNFRAAM  432 (572)
Q Consensus       420 ~~~~s~~~~~~~~  432 (572)
                      ++..+.++....+
T Consensus       374 ~~~~s~~~~~~~~  386 (398)
T 2xdo_A          374 AQEESTQNEIEMF  386 (398)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9998888776554

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=100.00  E-value=2.6e-34  Score=301.23  Aligned_cols=327  Identities=13%  Similarity=0.095  Sum_probs=197.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~-~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      .++||+||||||+||++|+.|+++|++|+||||++.+. +..++..|++++++   .+ |+.........+   ......
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~---~l-~~~~~~~~~~~~---~~~~~~   75 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILN---EA-DIKADRSFIANE---VKGARI   75 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHH---HT-TCCCCTTTEEEE---ESEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHH---Hc-CCCchhhhhhcc---cceEEE
Confidence            46999999999999999999999999999999988763 34457778776554   44 442211110000   111111


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                       .+..+.........       ...+...+.++|..|++.|.+.+.+.|+                   +++++++++++
T Consensus        76 -~~~~~~~~~~~~~~-------~~~~~~~~~i~R~~~~~~L~~~a~~~G~-------------------~~~~~~~v~~~  128 (397)
T 3oz2_A           76 -YGPSEKRPIILQSE-------KAGNEVGYVLERDKFDKHLAALAAKAGA-------------------DVWVKSPALGV  128 (397)
T ss_dssp             -ECTTCSSCEEEECS-------SSSCCCEEEECHHHHHHHHHHHHHHHTC-------------------EEESSCCEEEE
T ss_pred             -EeCCCceEeecccc-------ccCCceeEEEEHHHHHHHHHHHHHhcCc-------------------EEeeeeeeeee
Confidence             11222211111100       0112223578999999999999999887                   89999999999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEE
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (572)
                      ..+++.++..... .++  +..+++||+||||||++|.||+.+|+...............+....     ....+....+
T Consensus       129 ~~~~~~~~~v~~~-~~~--~~~~~~a~~vIgAdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  200 (397)
T 3oz2_A          129 IKENGKVAGAKIR-HNN--EIVDVRAKMVIAADGFESEFGRWAGLKSVILARNDIISALQYRMIN-----VDVDPDYTDF  200 (397)
T ss_dssp             EEETTEEEEEEEE-ETT--EEEEEEEEEEEECCCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEES-----CCCCTTEEEE
T ss_pred             eeccceeeeeeec-ccc--cceEEEEeEEEeCCccccHHHHHcCCCcccccceeeeeeEEEEeec-----cccCccccee
Confidence            9888877654432 233  4557999999999999999999998765544333333333222111     0112222222


Q ss_pred             EEe---cCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCC--CceeEEEe-cCccccceecccc
Q 008258          281 IFN---TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL--SDIDVIDI-KPWVMHAEVAEKF  354 (572)
Q Consensus       281 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~i~~~-~~w~~~~~~a~~~  354 (572)
                      ++.   |....++.+..  .+.+.+.+......    ........+.+.+++...+  ...+.... ..+.........+
T Consensus       201 ~~~~~~~~g~~~~~~~~--~~~~~vg~~~~~~~----~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  274 (397)
T 3oz2_A          201 YLGSIAPAGYIWVFPKG--EGMANVGIGSSINW----IHNRFELKNYLDRFIENHPGLKKGQDIQLVTGGVSVSKVKMPI  274 (397)
T ss_dssp             ECSTTSTTEEEEEEEEE--TTEEEEEEEEETTT----SCSHHHHHHHHHHHHHTCHHHHTSEEEEEEEEEEECCCCCSCC
T ss_pred             eeeccCCCceEEEeecc--cceeEEEEeeccch----hhhhhhHHHHHHHHHHhCccccccceeeeeeccccccCcccce
Confidence            221   22233333332  23333333221111    1122333344444332211  01111111 1111112223344


Q ss_pred             cccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-CCCchhhHhhHHHhhhHHHH
Q 008258          355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPIAE  418 (572)
Q Consensus       355 ~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g~~~~~~L~~Y~~eR~~~a~  418 (572)
                      .  .+||+|+|||||.++|++|||+|+||+||..||+.|+..++ ++..+.+|+.|+++++++..
T Consensus       275 ~--~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~~~~~~~~L~~Ye~~~~~~~~  337 (397)
T 3oz2_A          275 T--MPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESNDYSPQMMQKYEKLIKERFE  337 (397)
T ss_dssp             E--ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred             e--eeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHH
Confidence            3  58999999999999999999999999999999999998774 56678899999999887653

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=100.00  E-value=2.9e-34  Score=300.53  Aligned_cols=322  Identities=16%  Similarity=0.198  Sum_probs=210.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      ..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++++|+.+ |+.+++...+.+...+   .+.
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~~---~~~   85 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGL-GALDDVLQGSHTPPTY---ETW   85 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHT-TCHHHHHTTCBCCSCE---EEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHc-CCHHHHHhhCCCccce---EEE
Confidence            357999999999999999999999999999999988877789999999999999999 9999998776554322   222


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                      ..  |..+...+..          ......++|..|++.|.+.+.+.|+                   +++++++|++++
T Consensus        86 ~~--g~~~~~~~~~----------~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~i~  134 (379)
T 3alj_A           86 MH--NKSVSKETFN----------GLPWRIMTRSHLHDALVNRARALGV-------------------DISVNSEAVAAD  134 (379)
T ss_dssp             ET--TEEEEEECGG----------GCCEEEEEHHHHHHHHHHHHHHTTC-------------------EEESSCCEEEEE
T ss_pred             eC--CceeeeccCC----------CCceEEECHHHHHHHHHHHHHhcCC-------------------EEEeCCEEEEEE
Confidence            22  5544332210          1124678999999999999988876                   899999999998


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccc-cccCCCc-eEE
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDY-LLNERPG-MLF  279 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~  279 (572)
                      +  ++ +|++.   +|+    +++||+||+|||.+|.+|+.++.....  .+.....+...... ... .....+. ...
T Consensus       135 ~--~~-~v~~~---~g~----~~~ad~vV~AdG~~s~vr~~l~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  201 (379)
T 3alj_A          135 P--VG-RLTLQ---TGE----VLEADLIVGADGVGSKVRDSIGFKQDR--WVSKDGLIRLIVPR-MKKELGHGEWDNTID  201 (379)
T ss_dssp             T--TT-EEEET---TSC----EEECSEEEECCCTTCHHHHHHCCCEEE--EEEEEEEEEEEEEC-CHHHHCSSCTTSEEE
T ss_pred             e--CC-EEEEC---CCC----EEEcCEEEECCCccHHHHHHhcCCCCc--CcCCcEEEEEEech-hhccCCcCCcccccc
Confidence            7  34 56553   453    689999999999999999999863211  11111111111100 000 0000011 111


Q ss_pred             E--EEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCH--HHHH-------HHHHHHhCCCCCceeEEEecCccccc
Q 008258          280 F--IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSP--EICE-------KLIFKLVGWELSDIDVIDIKPWVMHA  348 (572)
Q Consensus       280 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~l~~~~~~~~~~~~i~~~~~w~~~~  348 (572)
                      .  ++.++...++++.  ..+...+.+.........+.+.+  ..+.       +++......        ....|++..
T Consensus       202 ~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~  271 (379)
T 3alj_A          202 MWNFWPRVQRILYSPC--NENELYLGLMAPAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKL--------KTARYDKYE  271 (379)
T ss_dssp             EECCSSSCCEEEEEEC--SSSEEEEEEEECTTCTTTTCSSCCHHHHHHHCGGGHHHHHHHHTC--------TTCCEEEEE
T ss_pred             cceEECCCCEEEEEEC--CCCcEEEEEEecCCCCCHHHHHHHHhcCCchhccHHHHHhhCCcc--------ceEEecccc
Confidence            1  2344444333333  33443333332211110111110  1111       222221101        112344333


Q ss_pred             -eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHH
Q 008258          349 -EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ  426 (572)
Q Consensus       349 -~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~  426 (572)
                       ..+++|.  .|||+|+|||||.++|++|||+|+||+||.+|+|+|+.   ..+.+.+|++|+++|++++..++..+.+
T Consensus       272 ~~~~~~~~--~~rv~lvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~---~~~~~~~l~~Y~~~r~~~~~~~~~~s~~  345 (379)
T 3alj_A          272 TTKLDSWT--RGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE---GSSVEDALVAWETRIRPITDRCQALSGD  345 (379)
T ss_dssp             EEEESCSE--ETTEEECTHHHHCCCGGGSCHHHHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcc--cCcEEEEEcccCCCCcchhhhHHHHHHHHHHHHHHhcc---ccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             2456776  59999999999999999999999999999999999974   2345789999999999999998888843

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=100.00  E-value=2.6e-32  Score=296.81  Aligned_cols=350  Identities=15%  Similarity=0.142  Sum_probs=216.7

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHH-HHHhhcchHHHHHhcCCCcccccc
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLAEEIERSQPPVDLWRK  117 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e-~l~~l~Gl~~~l~~~~~~~~~~~~  117 (572)
                      |.+.++||+||||||+||++|+.|+++|++|+||||.+.+... .+..+.++++. +++.+ |+.+.+...+.+......
T Consensus         3 ~~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-~g~~~~~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~   80 (512)
T 3e1t_A            3 TRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQ-IGESLLPATVHGICAML-GLTDEMKRAGFPIKRGGT   80 (512)
T ss_dssp             --CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCC-SCCBCCHHHHTTHHHHT-TCHHHHHTTTCCEECEEE
T ss_pred             CCCccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCC-CCcccCcchHHHHHHHh-CcHHHHHHcCCccccCce
Confidence            3455689999999999999999999999999999999755433 34556676654 89999 999998877655432222


Q ss_pred             eeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258          118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC  197 (572)
Q Consensus       118 ~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v  197 (572)
                      +.+..  ....+. ...... .   .......++++|..|.+.|.+.+.+.|+                   +++++++|
T Consensus        81 ~~~~~--~~~~~~-~~~~~~-~---~~~~~~~~~v~r~~l~~~L~~~a~~~Gv-------------------~i~~~~~V  134 (512)
T 3e1t_A           81 FRWGK--EPEPWT-FGFTRH-P---DDPYGFAYQVERARFDDMLLRNSERKGV-------------------DVRERHEV  134 (512)
T ss_dssp             EECSS--CSSCEE-EESSSS-S---SSTTCCEEBCCHHHHHHHHHHHHHHTTC-------------------EEESSCEE
T ss_pred             EEecC--Cccccc-cccccC-C---CCCcceeeEecHHHHHHHHHHHHHhCCC-------------------EEEcCCEE
Confidence            22211  111110 110000 0   0112234678999999999999998887                   89999999


Q ss_pred             EEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCc
Q 008258          198 VSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG  276 (572)
Q Consensus       198 ~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~  276 (572)
                      ++++.+++.++ |++.+ .+|  ++.+++||+||+|||.+|.+|+++|............+...+....  .. ..+...
T Consensus       135 ~~v~~~~~~v~gv~~~~-~dG--~~~~i~ad~VI~AdG~~S~vr~~lg~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~  208 (512)
T 3e1t_A          135 IDVLFEGERAVGVRYRN-TEG--VELMAHARFIVDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGK--RL-PAPRQG  208 (512)
T ss_dssp             EEEEEETTEEEEEEEEC-SSS--CEEEEEEEEEEECCCTTCSSGGGTCCEEECSTTCEEEEEEEEESCC--CC-STTCTT
T ss_pred             EEEEEECCEEEEEEEEe-CCC--CEEEEEcCEEEECCCcchHHHHHcCCCccCchhcceEEEEEecCCc--cC-CCCCcC
Confidence            99999888765 55552 234  3457999999999999999999997643322221222222222110  00 011122


Q ss_pred             eEEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHH------HhCCC-------CCceeEEEec
Q 008258          277 MLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFK------LVGWE-------LSDIDVIDIK  342 (572)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~------~~~~~-------~~~~~i~~~~  342 (572)
                      ..+..+.+....++++.  ..+.+.+.+.+.... .......++.+.+++..      .+...       ...+.+.  .
T Consensus       209 ~~~~~~~~~G~~~~~Pl--~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~l~~~~~~~~~~~~~i~~~--~  284 (512)
T 3e1t_A          209 NILSAAFQDGWFWYIPL--SDTLTSVGAVVSREAAEAIKDGHEAALLRYIDRCPIIKEYLAPATRVTTGDYGEIRIR--K  284 (512)
T ss_dssp             SEEEEEETTEEEEEEEC--SSSEEEEEEEEEHHHHTTTSSCHHHHHHHHHHTSHHHHHHHTTCEECCSSTTSSCEEE--E
T ss_pred             ceEEEEeCCceEEEEEe--CCCeEEEEEEecHHHhhhhcCCHHHHHHHHHHhCchHHHHHhcCccccccccccceee--c
Confidence            23333444443333333  334433332221110 11111223333333321      12111       0011111  0


Q ss_pred             CccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC-CchhhHhhHHHhhhHHHHHhH
Q 008258          343 PWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNT  421 (572)
Q Consensus       343 ~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~-~~~~~L~~Y~~eR~~~a~~~~  421 (572)
                      .|.   ....+|.  .+||+|+|||||.++|..|||+|+||+||..|+++|...+++. ..+.+|+.|+++|+++...+.
T Consensus       285 ~~~---~~~~~~~--~~~vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~~~l~~~~~~~~aL~~Ye~~~~~~~~~~~  359 (512)
T 3e1t_A          285 DYS---YCNTSFW--KNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLAGEMSEQRCFEEFERRYRREYGNFY  359 (512)
T ss_dssp             SCC---EEESCSB--CSSEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc---ccccccc--cCCEEEEechhhcCCCccccCHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHH
Confidence            111   1334554  5899999999999999999999999999999999999987654 345789999999999999888


Q ss_pred             HHHHHHHHHh
Q 008258          422 ALSVQNFRAA  431 (572)
Q Consensus       422 ~~s~~~~~~~  431 (572)
                      +.....+...
T Consensus       360 ~~~~~~y~~~  369 (512)
T 3e1t_A          360 QFLVAFYDMN  369 (512)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhh
Confidence            8777666544

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=100.00  E-value=4.9e-34  Score=299.02  Aligned_cols=324  Identities=14%  Similarity=0.080  Sum_probs=200.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchH-HH-HHhcCCCccccccee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLA-EE-IERSQPPVDLWRKFI  119 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~-~~-l~~~~~~~~~~~~~~  119 (572)
                      .||+||||||+||++|+.|+++  |++|+||||.+.+...++++.+++++++.+... ++. +. +.....+.   ....
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~   76 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANP-LSYLDAPERLNPQFL---EDFK   76 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCG-GGGSSCGGGGCCEEE---CCEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCc-chhhhhhHHHhhccc---cceE
Confidence            3799999999999999999999  999999999988877889999999887733332 443 33 32222211   1112


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                      +..  .|..+..       .     .+.....++|..|.+.|.+.+.+.|+                   +++++++|++
T Consensus        77 ~~~--~g~~~~~-------~-----~~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~  123 (381)
T 3c4a_A           77 LVH--HNEPSLM-------S-----TGVLLCGVERRGLVHALRDKCRSQGI-------------------AIRFESPLLE  123 (381)
T ss_dssp             EEE--SSSEEEC-------C-----CCSCEEEEEHHHHHHHHHHHHHHTTC-------------------EEETTCCCCS
T ss_pred             EEe--CCeeEEe-------c-----CCCceeeecHHHHHHHHHHHHHHCCC-------------------EEEeCCEecc
Confidence            211  2433210       0     01123468899999999999988887                   7788888877


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhc----CCccccccCcceEEEEEEecCccccccccCCC
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV----GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~l----g~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (572)
                      +++..                  ++++|+||+|||.+|. |+.+    +....+..   ...........      . .+
T Consensus       124 i~~~~------------------~~~ad~vV~AdG~~S~-R~~l~~~~g~~~~~~~---~~~~~~~~~~~------~-~~  174 (381)
T 3c4a_A          124 HGELP------------------LADYDLVVLANGVNHK-TAHFTEALVPQVDYGR---NKYIWYGTSQL------F-DQ  174 (381)
T ss_dssp             GGGCC------------------GGGCSEEEECCGGGGG-TCCSSGGGCCCCEEEE---EEEEEEEESSC------C-SS
T ss_pred             chhcc------------------cccCCEEEECCCCCch-HHhhhhhcCCCcccCC---ccEEEEecCCC------C-Cc
Confidence            75420                  1359999999999999 9987    32222111   11111111100      0 11


Q ss_pred             ceEEEEEecCceEEEEEecCCCCeEEEEeecCCCC---CCCCCCCHHHHHHHHHHHhCCCCCceeEEEe-c-Ccccc-ce
Q 008258          276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ---QNLEDFSPEICEKLIFKLVGWELSDIDVIDI-K-PWVMH-AE  349 (572)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~-~-~w~~~-~~  349 (572)
                      ...++.+.+.+..++...+...+.+.+.+...+..   .....++++...+.+.+.++......+++.. . .|+.. ..
T Consensus       175 ~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~  254 (381)
T 3c4a_A          175 MNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQAELGGHGLVSQPGLGWRNFMTL  254 (381)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSSCEEEEEEECHHHHHHTTSSSSCHHHHHHHHHHHTHHHHTTCCCBCCTTTCSEEEEEC
T ss_pred             ceeeEeeCCCcEEEEEEEEecCCeEEEEEECCccccccCCcccCChHHHHHHHHHHhcccCCCchhhcCCCcceeeeccc
Confidence            11112222322222112233334443333221110   1223456555555555443211011222221 1 46543 34


Q ss_pred             ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      .+++|.  +|||+|+|||||.++|++|||+|+||+||.+|||+|+..   .+.+.+|+.|+++|++++..++..+..+.+
T Consensus       255 ~~~~~~--~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~---~~~~~aL~~Y~~~r~~~~~~~~~~s~~~~~  329 (381)
T 3c4a_A          255 SHDRCH--DGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTE---DGVPAALKRFEERALPLVQLFRGHADNSRV  329 (381)
T ss_dssp             CCSCSE--ETTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcc--cCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            567786  599999999999999999999999999999999999873   346789999999999999999998877765


Q ss_pred             Hhccccccc
Q 008258          430 AAMEVPSAL  438 (572)
Q Consensus       430 ~~~~~~~~~  438 (572)
                      .+...+..+
T Consensus       330 ~~~~~~~~~  338 (381)
T 3c4a_A          330 WFETVEERM  338 (381)
T ss_dssp             HHHTCSCC-
T ss_pred             hhhchhhhh
Confidence            554443333

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=100.00  E-value=6.1e-31  Score=278.83  Aligned_cols=342  Identities=14%  Similarity=0.133  Sum_probs=212.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+. ...+..++++++++|+.+ |+.+.+.+.+.+......+. 
T Consensus         3 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~-~~~g~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~-   79 (421)
T 3nix_A            3 REKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR-FVIGESLLPRCMEHLDEA-GFLDAVKAQGFQQKFGAKFV-   79 (421)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC-CCSCCBCCGGGHHHHHHT-TCHHHHHHTTCEEECEEEEE-
T ss_pred             CccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC-CcccCcccHhHHHHHHHc-CChHHHHHcCCcccCCcEEE-
Confidence            456899999999999999999999999999999997654 356778999999999999 99999888764432211111 


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                          .+......+....  ..  ..+...++++|..|.+.|.+.+.+.|+                   +++++++|+++
T Consensus        80 ----~~~~~~~~~~~~~--~~--~~~~~~~~~~r~~~~~~L~~~a~~~gv-------------------~i~~~~~v~~i  132 (421)
T 3nix_A           80 ----RGKEIADFNFSDQ--FS--NGWNWTWQVPRGNFDKTLADEAARQGV-------------------DVEYEVGVTDI  132 (421)
T ss_dssp             ----ETTEEEEEETTSC--SS--CSCCCEEECCHHHHHHHHHHHHHHHTC-------------------EEECSEEEEEE
T ss_pred             ----eCCeeEEEeehhh--cC--CCCCceeEECHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEE
Confidence                1122222211110  00  112234678999999999999998887                   89999999999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEE
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF  280 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  280 (572)
                      +.+++++.+++.. ++|  ++++++||+||+|||.+|.+|+.++............+..++........  .......++
T Consensus       133 ~~~~~~~~v~v~~-~~g--~~~~~~a~~vV~A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  207 (421)
T 3nix_A          133 KFFGTDSVTTIED-ING--NKREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVA--AEMEGNRIT  207 (421)
T ss_dssp             EEETTEEEEEEEE-TTS--CEEEEEEEEEEECCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC------CCSEEE
T ss_pred             EEeCCEEEEEEEc-CCC--CEEEEEcCEEEECCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCCc--cCCCCeEEE
Confidence            9988888777764 244  34579999999999999999999988765544334344333332111000  001112222


Q ss_pred             EEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCC--CCceeE-EEecCccccceecccccc
Q 008258          281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWE--LSDIDV-IDIKPWVMHAEVAEKFLC  356 (572)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~--~~~~~i-~~~~~w~~~~~~a~~~~~  356 (572)
                      +......++++..+...+...+.+...+.. .....-.++.+.+++.......  ....+. .....|........++. 
T Consensus       208 ~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-  286 (421)
T 3nix_A          208 AVVHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIANEGHIAERFKSEEFLFEPRTIEGYAISASKLY-  286 (421)
T ss_dssp             EEEEETTEEEEEEECTTSEEEEEEEECHHHHTTSCSCHHHHHHHHHHTCTTTHHHHTTCCBSSCCEEEECCCBEESCSE-
T ss_pred             EEeCCCCEEEEEEEECCCCEEEEEEecHHHhhhcCCCHHHHHHHHHHhCcHHHHHHhcCccccCceeecccceeeeeec-
Confidence            221111222323333334544433221111 0111112222333332211000  000000 01112222223344554 


Q ss_pred             cCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHh
Q 008258          357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFN  420 (572)
Q Consensus       357 ~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~  420 (572)
                       .+|++|+|||||.++|+.|+|+|+|++||..|++.|...+++.. ...++.|+++++......
T Consensus       287 -~~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~~~~-~~~~~~y~~~~~~~~~~~  348 (421)
T 3nix_A          287 -GDGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKGEE-VNWEKDFVEHMMQGIDTF  348 (421)
T ss_dssp             -ETTEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHTTCC-CCHHHHTHHHHHHHHHHH
T ss_pred             -cCCEEEecccccccCCcccccHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHH
Confidence             59999999999999999999999999999999999999887643 357889999988765533

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=100.00  E-value=1.2e-31  Score=287.23  Aligned_cols=333  Identities=15%  Similarity=0.086  Sum_probs=204.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccce
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~--~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~  118 (572)
                      +.++||+||||||+|+++|+.|+++|++|+||||.+.+.  ...++..+   +.+.|+.+ |+.+......  ...+...
T Consensus         4 ~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l---~~~~l~~l-g~~~~~~~~~--~~~~~~~   77 (453)
T 3atr_A            4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAV---SKAHFDKL-GMPYPKGEEL--ENKINGI   77 (453)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEE---EHHHHHHT-TCCCCCGGGE--EEEEEEE
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccc---cHHHHHHh-cCCCCchHHH--Hhhhcce
Confidence            346899999999999999999999999999999987642  23345555   45677777 6543211100  0000111


Q ss_pred             eeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEE
Q 008258          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (572)
Q Consensus       119 ~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~  198 (572)
                      ... +..+...          +.   .+...+.++|..|.+.|.+.+.+.|+                   +++++++|+
T Consensus        78 ~~~-~~~~~~~----------~~---~~~~~~~i~r~~l~~~L~~~a~~~gv-------------------~i~~~~~v~  124 (453)
T 3atr_A           78 KLY-SPDMQTV----------WT---VNGEGFELNAPLYNQRVLKEAQDRGV-------------------EIWDLTTAM  124 (453)
T ss_dssp             EEE-CTTSSCE----------EE---EEEEEEEECHHHHHHHHHHHHHHTTC-------------------EEESSEEEE
T ss_pred             EEE-CCCCceE----------Ee---ECCCcEEEcHHHHHHHHHHHHHHcCC-------------------EEEeCcEEE
Confidence            110 1111100          00   01123568899999999999988876                   899999999


Q ss_pred             EEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCcccc--cc---CcceEEEEEEecCcccccccc
Q 008258          199 SVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG--EK---DLQKLVSVHFLSKDLGDYLLN  272 (572)
Q Consensus       199 ~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g--~~---~~~~~~~~~~~~~~l~~~~~~  272 (572)
                      +++++++.++ |++....+|  ++.+++||+||+|||.+|.+|+.++.....  ..   .+...+...+.....     .
T Consensus       125 ~i~~~~~~v~gv~~~~~~~G--~~~~~~ad~VV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  197 (453)
T 3atr_A          125 KPIFEDGYVKGAVLFNRRTN--EELTVYSKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKED-----I  197 (453)
T ss_dssp             EEEEETTEEEEEEEEETTTT--EEEEEECSEEEECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSC-----C
T ss_pred             EEEEECCEEEEEEEEEcCCC--ceEEEEcCEEEECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCC-----c
Confidence            9999888776 666522134  345799999999999999999999875421  11   111111111111100     0


Q ss_pred             CCCceEEEEEe----cCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccc-c
Q 008258          273 ERPGMLFFIFN----TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVM-H  347 (572)
Q Consensus       273 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~-~  347 (572)
                      ..+....+++.    |+...++++..  .+.+.+.+........ . -..+.+.+.+++... .....++.....+.+ .
T Consensus       198 ~~~~~~~~~~~~~~~~~g~~~~~P~~--~~~~~vg~~~~~~~~~-~-~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~  272 (453)
T 3atr_A          198 EDHDYLRIFIDQETSPGGYWWYFPKG--KNKVNVGLGIQGGMGY-P-SIHEYYKKYLDKYAP-DVDKSKLLVKGGALVPT  272 (453)
T ss_dssp             TTTTEEEEECCTTTSTTSCEEEEEEE--TTEEEEEEEEESSSCC-C-CHHHHHHHHHHHHCT-TEEEEEEEEEEEEEEEC
T ss_pred             cCCCeEEEEECCCCCCCcEEEEEECC--CCeEEEEEEecCCCCC-C-CHHHHHHHHHHhhhh-hcCCCeEEeccceeccC
Confidence            12233323332    34444444443  2444443332221111 1 123455556655321 111123333222211 1


Q ss_pred             ceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-CCCchhhHhhHHHhhhHHHHHhHHHHHH
Q 008258          348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPIAEFNTALSVQ  426 (572)
Q Consensus       348 ~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g~~~~~~L~~Y~~eR~~~a~~~~~~s~~  426 (572)
                      ....++|.  .+||+|+|||||.++|++|||+|+||+||.+||++|+..++ ++..+.+|+.|+++|+++....+..+..
T Consensus       273 ~~~~~~~~--~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~  350 (453)
T 3atr_A          273 RRPLYTMA--WNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETGDFSASGLWDMNICYVNEYGAKQASLDI  350 (453)
T ss_dssp             SSCCSCSE--ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTTTHHHHHHHHHTHHHHHHHHH
T ss_pred             CCCCCcee--cCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23455665  59999999999999999999999999999999999998765 4445789999999999998776665543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=100.00  E-value=1.9e-31  Score=293.10  Aligned_cols=347  Identities=15%  Similarity=0.206  Sum_probs=216.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +.++||+||||||+|+++|+.|+++|++|+||||.+.+.. ..+..++++++++|+.+ |+++.+...+........+.+
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~-~~G~~l~p~~~~~l~~l-Gl~~~l~~~~~~~~~~~~~~~   98 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRY-RVGESLLPGTMSILNRL-GLQEKIDAQNYVKKPSATFLW   98 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCC-CCCCBCCHHHHHHHHHT-TCHHHHHHHCCEEECEEEEEC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCC-ceeeeECHHHHHHHHHc-CCcHHHHhcCCcccCCcEEEe
Confidence            3468999999999999999999999999999999876543 44778999999999999 999988876544322122222


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                      ..  .+.. ........ .... ......+++++..|...|.+.+.+.|+                   +++++++|+++
T Consensus        99 ~~--~~~~-~~~~~~~~-~~~~-~~~~~~~~v~r~~l~~~L~~~a~~~Gv-------------------~i~~g~~V~~v  154 (591)
T 3i3l_A           99 GQ--DQAP-WTFSFAAP-KVAP-WVFDHAVQVKREEFDKLLLDEARSRGI-------------------TVHEETPVTDV  154 (591)
T ss_dssp             SS--SCCC-EEEECCCC---CT-TCCSCEEECCHHHHHHHHHHHHHHTTC-------------------EEETTCCEEEE
T ss_pred             cC--CCcc-ceeecccc-cccc-cccCeeEEEcHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEE
Confidence            11  1111 01110000 0000 011224678999999999999998887                   89999999999


Q ss_pred             eee-CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258          201 SAT-DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (572)
Q Consensus       201 ~~~-~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (572)
                      +.+ ++.+.|++..  +|  .+.+++||+||+|||.+|.+|+.+++...........+...+....  . ...+.....+
T Consensus       155 ~~~~g~~~~V~~~~--~G--~~~~i~AdlVV~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~--~-~~~~~~~~~~  227 (591)
T 3i3l_A          155 DLSDPDRVVLTVRR--GG--ESVTVESDFVIDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKD--P-FEGDLKGTTY  227 (591)
T ss_dssp             ECCSTTCEEEEEEE--TT--EEEEEEESEEEECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCC--S-CCSTTTTCEE
T ss_pred             EEcCCCEEEEEEec--CC--ceEEEEcCEEEECCCCcchhHHHcCCCCCCccccceEEEEEEecCc--c-ccCCCCCceE
Confidence            875 5667777652  44  3357999999999999999999998754322111111222222111  0 0111223333


Q ss_pred             EEEecCceEEEEEecCCCCeEEEEeecCCCCC-CCCCCCHHHHHHHH-------HHHhCCC--CCceeEEEecCccccce
Q 008258          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQ-NLEDFSPEICEKLI-------FKLVGWE--LSDIDVIDIKPWVMHAE  349 (572)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l-------~~~~~~~--~~~~~i~~~~~w~~~~~  349 (572)
                      ..+.+.+..+.++.  ..+.+.+.+...+... .....+.+...+.+       ...+...  ......  ...|.   .
T Consensus       228 ~~~~~~G~~w~iPl--~~~~~sv~~~~~~~~~~~l~~~~~~~~~~~l~~~~p~l~~~l~~~~~~~~~~~--~~~~~---~  300 (591)
T 3i3l_A          228 SITFEDGWVWMIPI--KDDLYSVGLVVDRSKSAEVREQGADAFYSSTLAKCAKAMDILGGAEQVDEVRI--VQDWS---Y  300 (591)
T ss_dssp             EEEETTEEEEEEEC--SSSEEEEEEEEEGGGHHHHHHHCHHHHHHHHHTTCHHHHHHHTTCEECSCCEE--EEEEE---E
T ss_pred             EEEcCCcEEEEEEC--CCCeEEEEEEcCHHHHhhhccCCHHHHHHHHHHhCHHHHHHHhcCccccCceE--ecccc---c
Confidence            44445544443433  3344444332211110 00001111111111       1111110  001111  11232   2


Q ss_pred             ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCC-chhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258          350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA-PASILNTYETERKPIAEFNTALSVQNF  428 (572)
Q Consensus       350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~-~~~~L~~Y~~eR~~~a~~~~~~s~~~~  428 (572)
                      ...+|.  .+||+++|||||.++|..|||+|+|++||..||++|...+++.. .+.+++.|+++|++....+.+.....|
T Consensus       301 ~~~~~~--~~rvvLIGDAAh~~~Pl~GqGinlAl~dA~~LA~~L~~~l~~~~~~~~al~~Y~~~~~~~~~~i~~~~~~~Y  378 (591)
T 3i3l_A          301 DTEVFS--ADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHGDEKDAVHAWYNRTYREAYEQYHQFLASFY  378 (591)
T ss_dssp             EESCSE--ETTEEECGGGTCBCCGGGCCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcc--cCCEEEEccccccCCCcccccHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334554  59999999999999999999999999999999999998876543 466899999999999999888887777


Q ss_pred             H
Q 008258          429 R  429 (572)
Q Consensus       429 ~  429 (572)
                      .
T Consensus       379 ~  379 (591)
T 3i3l_A          379 T  379 (591)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.97  E-value=8e-31  Score=286.08  Aligned_cols=343  Identities=13%  Similarity=0.116  Sum_probs=205.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHh------------CCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHH--HHh
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTK------------LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IER  107 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~------------~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~--l~~  107 (572)
                      ..+||+||||||+|+++|+.|++            .|++|+|||+.+.+.. +.+..+.++++++|+.+ |+.+.  +.+
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~~-g~g~~~~p~~~~~l~~l-Gi~e~~~~~~   83 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATI-GVGEGTWPSMRSTLSKI-GIDENDFIRQ   83 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCCC-CSCEECCTHHHHHHHHH-TCCHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCCc-ceeeechHhHHHHHHHc-CCCHHHHHHH
Confidence            45799999999999999999999            9999999999765543 33788999999999999 99886  565


Q ss_pred             cCCCccc------ccc-------eeeeeCC-CCCeeeeecC---CC----c-------------------------cccc
Q 008258          108 SQPPVDL------WRK-------FIYCTSV-TGPILGSVDH---MQ----P-------------------------QDFE  141 (572)
Q Consensus       108 ~~~~~~~------~~~-------~~~~~~~-~G~~~~~~~~---~~----~-------------------------~~~~  141 (572)
                      .+.+...      |..       ..+.... .|..+...+.   +.    .                         ..+.
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~~~  163 (526)
T 2pyx_A           84 CDASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYH  163 (526)
T ss_dssp             TTCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCTTC
T ss_pred             cCCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccccC
Confidence            4432111      110       0000000 0100000000   00    0                         0000


Q ss_pred             cccCCccccccChhhHHHHHHHHHHh-cCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCcee
Q 008258          142 KVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT  220 (572)
Q Consensus       142 ~~~sp~~~~~l~q~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~  220 (572)
                        ......++++|..|.+.|.+.+.+ .|+                   +++++ +|++++++++++.+.+... +|.  
T Consensus       164 --~~~~~~~~~~r~~l~~~L~~~a~~~~Gv-------------------~i~~~-~v~~i~~~~~g~~~~v~~~-~g~--  218 (526)
T 2pyx_A          164 --FQNNYGYHLNAAKFSQLLTEHCTQKLGV-------------------THIRD-HVSQIINNQHGDIEKLITK-QNG--  218 (526)
T ss_dssp             --CSSCCEEEECHHHHHHHHHHHHHHTSCC-------------------EEEEC-CEEEEEECTTSCEEEEEES-SSC--
T ss_pred             --CCCCeeEEEcHHHHHHHHHHHHHhcCCC-------------------EEEEe-EEEEEEecCCCcEEEEEEC-CCC--
Confidence              011123678999999999999988 787                   88899 6999988766654444432 443  


Q ss_pred             eEEEEecEEEeecCCChhh-hhhcCCccccccC---cceEEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCC
Q 008258          221 ERNIQCNILIGTDGAGSTV-RKLVGIDLVGEKD---LQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLK  296 (572)
Q Consensus       221 ~~~i~ad~vVgADG~~S~V-R~~lg~~~~g~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (572)
                        +++||+||+|||.+|.+ |+.+|.++.+...   ....+.+.........   ...+... ....+....+.++..  
T Consensus       219 --~i~ad~vV~AdG~~S~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~g~~~~~pl~--  290 (526)
T 2pyx_A          219 --EISGQLFIDCTGAKSLLLGEHLQVPFLSQKSVLFNDRALAIQVPYSDANS---PIASCTH-STAQPNGWIWDIGLP--  290 (526)
T ss_dssp             --EEECSEEEECSGGGCCCCCCCTCCCEEECHHHHCCCEEEEEEEECSSTTC---CCCSSEE-EEEETTEEEEEEECS--
T ss_pred             --EEEcCEEEECCCcchHHHHHHhCCCcccccccccCccEEEEEeeccCCCC---CCCCcee-EEecCCCeEEEeeCC--
Confidence              48999999999999999 6778876643321   1122222221110000   0111111 122333333333322  


Q ss_pred             CCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCCcEEEEecccccCCCCCC
Q 008258          297 EGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGG  376 (572)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G  376 (572)
                      ....+..+ +.+     ...+++...+.+++.+......+.......|.+......+|.  .|||+|+|||||.++|+.|
T Consensus       291 ~~~~~~~v-~~~-----~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAh~~~P~~G  362 (526)
T 2pyx_A          291 TRKGVGYV-YSS-----SHTNDIDAQKTLFNYLGVDGAAADKLEPRQLAINPGYRAKCW--QNNCIAIGMAAGFIEPLEA  362 (526)
T ss_dssp             SEEEEEEE-ECT-----TTCCHHHHHHHHHHHHTCCHHHHHHCCCEEEECCCEEESCSE--ETTEEECGGGTEECCCTTC
T ss_pred             CceEEEEE-ecC-----CCCChHHHHHHHHHHHHhcCcccccCCceEEecccCcccccc--CCCEEEEEhhhcccCcccc
Confidence            22221111 111     112344445555555422100111011123333344455664  5999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       377 ~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      ||+|+|++||..|+..|...  +...+.+|++|+++|+++.+.+.+.....+.
T Consensus       363 qGi~~ai~da~~La~~L~~~--~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~  413 (526)
T 2pyx_A          363 SALALIEWTASTLAQQLPPN--RMVMDTISARVNERYQQHWQQIIDFLKLHYV  413 (526)
T ss_dssp             HHHHHHHHHHHHHHHTCCSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhhc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888777521  1234689999999999999888776655553

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.97  E-value=1.5e-28  Score=270.57  Aligned_cols=332  Identities=16%  Similarity=0.124  Sum_probs=191.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCC-CCeeeeChhHHHHHHhhcchHHHHHhcCCCcc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTH-PQAHFINNRYALVFRKLDGLAEEIERSQPPVD  113 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~------Gi~v~viEr~~~~~~~-~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~  113 (572)
                      .+++||+||||||+||++|+.|+++      |++|+||||.+.+..+ .++..+++++++.|  ++.+    ...+.+..
T Consensus        33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l--l~~~----~~~g~~~~  106 (584)
T 2gmh_A           33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL--FPDW----KEKGAPLN  106 (584)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH--CTTH----HHHTCCCC
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH--HHHH----HhcCCcee
Confidence            3468999999999999999999999      9999999999876443 45677899998876  4222    22233332


Q ss_pred             cc---cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccce
Q 008258          114 LW---RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE  190 (572)
Q Consensus       114 ~~---~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (572)
                      ..   ..+.+.. ..+. + .++......    ......+.++|..|++.|.+.+++.|+                   +
T Consensus       107 ~~~~~~~~~~~~-~~~~-~-~~~~~~~~~----~~~~~~~~v~r~~l~~~L~~~a~~~Gv-------------------~  160 (584)
T 2gmh_A          107 TPVTEDRFGILT-EKYR-I-PVPILPGLP----MNNHGNYVVRLGHLVSWMGEQAEALGV-------------------E  160 (584)
T ss_dssp             EECCEEEEEEEC-SSCE-E-ECCCCTTST----TCCTTCEECCHHHHHHHHHHHHHHTTC-------------------E
T ss_pred             eeechhheeeec-cCCC-c-cccccCccc----cccCCCEEEeHHHHHHHHHHHHHHcCC-------------------E
Confidence            10   0111111 1111 1 111000000    111223568899999999999998887                   8


Q ss_pred             EEeccEEEEEeeeCCe-EE-EEEEec---cCCce-----eeEEEEecEEEeecCCChhhhhhc----CCccccccCcce-
Q 008258          191 ILMGHECVSVSATDQC-IN-VIASFL---KEGKC-----TERNIQCNILIGTDGAGSTVRKLV----GIDLVGEKDLQK-  255 (572)
Q Consensus       191 i~~g~~v~~v~~~~~~-v~-v~~~~~---~~g~~-----~~~~i~ad~vVgADG~~S~VR~~l----g~~~~g~~~~~~-  255 (572)
                      |+++++++++..++++ |+ |++...   .+|+.     ...+++||+||+|||++|.+|+++    ++.......... 
T Consensus       161 i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~~g~  240 (584)
T 2gmh_A          161 VYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGI  240 (584)
T ss_dssp             EETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCEEE
T ss_pred             EEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchhHHh
Confidence            9999999999887654 43 444310   13321     013799999999999999999887    554322221111 


Q ss_pred             EEEEEEecCccccccccCCCceEEEEEe-c---C--ceEEEEEecCCCCeEEEEeecCCCCCCCCCCCH-HHHHHHH---
Q 008258          256 LVSVHFLSKDLGDYLLNERPGMLFFIFN-T---E--AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSP-EICEKLI---  325 (572)
Q Consensus       256 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l---  325 (572)
                      .+...+.. +..    ...++....++. |   .  ..++++......+.+.+.+........ ...++ +.+.+++   
T Consensus       241 g~~~~~~v-~~~----~~~~~~~~~~~g~~~~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~~~~l~~~~~~p  314 (584)
T 2gmh_A          241 GLKELWVI-DEK----KWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLLALGFVVGLDYQN-PYLSPFREFQRWKHHP  314 (584)
T ss_dssp             EEEEEEEC-CGG----GCCTTEEEEEEETTSCTTSCEEEEEEECCSSSCEEEEEEEEETTCCC-TTCCHHHHHHHHTTST
T ss_pred             hhhhheec-Ccc----cccCCeEEEEEeccccCCcCCceEEEEecCCCCeEEEEEEEecCccc-ccCChHHHHHHHHhCh
Confidence            11111111 100    112333222221 1   1  112333222103444444322221111 11222 3333221   


Q ss_pred             --HHHhCCCCCceeEEEe---cCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC
Q 008258          326 --FKLVGWELSDIDVIDI---KPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI  400 (572)
Q Consensus       326 --~~~~~~~~~~~~i~~~---~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~  400 (572)
                        ...+..    .+....   ..|.......++|.  .+||+|+|||||.++|+.|||+|+||+||.+|||+|+.+++..
T Consensus       315 ~i~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~--~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g  388 (584)
T 2gmh_A          315 SIKPTLEG----GKRIAYGARALNEGGFQSIPKLT--FPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSE  388 (584)
T ss_dssp             TTHHHHTT----CEEEEEEEEEEECCGGGGCCCCE--ETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhCC----CeEEEecceEccCCCcccCCccc--cCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcC
Confidence              111211    122211   11222334456675  5999999999999999999999999999999999999988532


Q ss_pred             --Cchhh---HhhHHHhhhHH
Q 008258          401 --APASI---LNTYETERKPI  416 (572)
Q Consensus       401 --~~~~~---L~~Y~~eR~~~  416 (572)
                        ..+.+   |++|+++|++.
T Consensus       389 ~~~~~~a~~~L~~Ye~~r~~~  409 (584)
T 2gmh_A          389 NLQSKTIGLHVTEYEDNLKNS  409 (584)
T ss_dssp             CCCCSSSSCCCTHHHHHHHTS
T ss_pred             CcchhhhhhhHHHHHHHHHHh
Confidence              33453   99999999976

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.96  E-value=3.8e-28  Score=264.16  Aligned_cols=336  Identities=13%  Similarity=0.103  Sum_probs=200.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHH--HHhcCCCccc----
Q 008258           44 VPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IERSQPPVDL----  114 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~---~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~--l~~~~~~~~~----  114 (572)
                      +||+||||||+|+++|+.|++   .|++|+||||.+.+. .+.+..+.++++++++.+ |+.+.  +.........    
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~~-~~~g~~~~~~~~~~l~~l-gi~~~~~~~~~~~~~~~~~~~   80 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRR-IGVGEATFSTVRHFFDYL-GLDEREWLPRCAGGYKLGIRF   80 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--------CCEECCTTHHHHHHHH-TCCHHHHHHHTTCEEECEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCCc-eeeccccCcchHHHHHHc-CCCHHHHHHHcCCeEecccee
Confidence            699999999999999999999   999999999976443 345667889999999999 88775  5544322211    


Q ss_pred             --ccc--eeeeeCCC------CCee------------e------------eecCCC----cccc----c------c--cc
Q 008258          115 --WRK--FIYCTSVT------GPIL------------G------------SVDHMQ----PQDF----E------K--VV  144 (572)
Q Consensus       115 --~~~--~~~~~~~~------G~~~------------~------------~~~~~~----~~~~----~------~--~~  144 (572)
                        |..  ..+.....      +..+            .            ......    ...+    .      .  ..
T Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  160 (511)
T 2weu_A           81 ENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLAEQ  160 (511)
T ss_dssp             ESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGGGC
T ss_pred             cCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccccC
Confidence              110  00000000      0000            0            000000    0001    0      0  00


Q ss_pred             C--CccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeE
Q 008258          145 S--PVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER  222 (572)
Q Consensus       145 s--p~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~  222 (572)
                      .  ....++++|..|.+.|.+.+.+.|+                   +++++ +|+++++++++..+.+... +|+    
T Consensus       161 ~~~~~~~~~~~~~~l~~~L~~~a~~~gv-------------------~~~~~-~v~~i~~~~~~~~~~v~~~-~g~----  215 (511)
T 2weu_A          161 RAQFPYAYHFDADEVARYLSEYAIARGV-------------------RHVVD-DVQHVGQDERGWISGVHTK-QHG----  215 (511)
T ss_dssp             CSCCSCEEEECHHHHHHHHHHHHHHTTC-------------------EEEEC-CEEEEEECTTSCEEEEEES-SSC----
T ss_pred             cCCCCeeEEEcHHHHHHHHHHHHHHCCC-------------------EEEEC-eEeEEEEcCCCCEEEEEEC-CCC----
Confidence            0  1223678999999999999998887                   88999 9999998766633333322 453    


Q ss_pred             EEEecEEEeecCCChhhh-hhcCCcccccc---CcceEEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCC
Q 008258          223 NIQCNILIGTDGAGSTVR-KLVGIDLVGEK---DLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEG  298 (572)
Q Consensus       223 ~i~ad~vVgADG~~S~VR-~~lg~~~~g~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (572)
                      +++||+||+|||.+|.+| +.+|.++.+..   .....+.+........    ...+. ......+....++++..   +
T Consensus       216 ~~~ad~vV~A~G~~S~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~g~~~~~P~~---~  287 (511)
T 2weu_A          216 EISGDLFVDCTGFRGLLINQTLGGRFQSFSDVLPNNRAVALRVPRENDE----DMRPY-TTATAMSAGWMWTIPLF---K  287 (511)
T ss_dssp             EEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECSSGG----GCCSS-EEEEEETTEEEEEEECS---S
T ss_pred             EEEcCEEEECCCcchHHHHHHhCCCCccccccCcccceEEEEeccCCCC----CCCcc-eeceecCCCcEEEEECC---C
Confidence            689999999999999995 45677654321   1112222222211100    01111 12223444333333332   1


Q ss_pred             eEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCC--ceeEEEecCccccceecccccccCCcEEEEecccccCCCCCC
Q 008258          299 EFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS--DIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGG  376 (572)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G  376 (572)
                      ...+.+.+..     ...+++...+.+.+.++..+.  ....+  ..|   ....+++.  .+||+|+|||||.++|+.|
T Consensus       288 ~~~~g~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~---~~~~~~~~--~~rv~liGDAAh~~~P~~g  355 (511)
T 2weu_A          288 RDGNGYVYSD-----EFISPEEAERELRSTVAPGRDDLEANHI--QMR---IGRNERTW--INNCVAVGLSAAFVEPLES  355 (511)
T ss_dssp             EEEEEEEECT-----TTSCHHHHHHHHHHHHCTTCTTSCCEEE--ECC---CEEESCSE--ETTEEECGGGTEECCGGGC
T ss_pred             ceEEEEEECC-----CCCCHHHHHHHHHHHhCcccccccceeE--Eee---cccccccc--CCCEEEEechhhccCcccc
Confidence            2222222211     123556666667776665432  11222  122   22344553  5999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          377 FGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       377 ~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      +|+|+|++||..|++.|..   +...+.+|+.|+++|+++.+.+.+.....+.
T Consensus       356 ~G~~~a~~da~~La~~l~~---~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~  405 (511)
T 2weu_A          356 TGIFFIQHAIEQLVKHFPG---ERWDPVLISAYNERMAHMVDGVKEFLVLHYK  405 (511)
T ss_dssp             CHHHHHHHHHHHHHHTCCC---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999988862   4456789999999999999887776554444

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.96  E-value=5.2e-28  Score=264.57  Aligned_cols=338  Identities=13%  Similarity=0.118  Sum_probs=202.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCCCCCCCeeeeChhHHH-HHHhhcchHHH--HHhcCCCcc--
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLAEE--IERSQPPVD--  113 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~---~Gi~v~viEr~~~~~~~~~a~~l~~rt~e-~l~~l~Gl~~~--l~~~~~~~~--  113 (572)
                      ..+||+||||||+|+++|+.|++   .|++|+||||.+.+. .+.+..+.+++++ +++.+ |+.+.  +........  
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~-~~~g~~~~~~~~~~~l~~l-G~~~~~~~~~~~~~~~~g   81 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPR-IGVGEATIPSLQKVFFDFL-GIPEREWMPQVNGAFKAA   81 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCC-CCSCEECCTHHHHHTHHHH-TCCHHHHGGGGTCEEECE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-cCCCcccchhHHHHHHHHh-CCCHHHHHHhcCchhhCC
Confidence            45799999999999999999999   999999999976443 3347788899999 99999 88764  443332221  


Q ss_pred             ----cccce-------eeeeCCCCCeeeeecCCC-------------cccc-------------c-------cccCCccc
Q 008258          114 ----LWRKF-------IYCTSVTGPILGSVDHMQ-------------PQDF-------------E-------KVVSPVSV  149 (572)
Q Consensus       114 ----~~~~~-------~~~~~~~G~~~~~~~~~~-------------~~~~-------------~-------~~~sp~~~  149 (572)
                          .|...       .+.. ..|... ..+...             ...+             .       ........
T Consensus        82 ~~~~~w~~~l~~~~~~~~~~-~~g~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  159 (538)
T 2aqj_A           82 IKFVNWRKSPDPSRDDHFYH-LFGNVP-NCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHA  159 (538)
T ss_dssp             EEEESCSSSCCTTSCCEEEE-ESSCCC-EETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCE
T ss_pred             ccccCcCcccccCCCCceEC-CCCccC-ccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCcc
Confidence                11100       0000 011000 000000             0000             0       00001123


Q ss_pred             cccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEE
Q 008258          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (572)
Q Consensus       150 ~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~v  229 (572)
                      +++++..|.+.|.+.+.+.|+                   +++++ +|++++.++++..+.+... +|+    +++||+|
T Consensus       160 ~~i~~~~l~~~L~~~a~~~gv-------------------~~~~~-~v~~i~~~~~g~~~~v~~~-~g~----~i~ad~v  214 (538)
T 2aqj_A          160 WHFDAHLVADFLKRWAVERGV-------------------NRVVD-EVVDVRLNNRGYISNLLTK-EGR----TLEADLF  214 (538)
T ss_dssp             EEECHHHHHHHHHHHHHHTTC-------------------EEEEC-CEEEEEECTTSCEEEEEET-TSC----EECCSEE
T ss_pred             EEEeHHHHHHHHHHHHHHCCC-------------------EEEEe-eEeEEEEcCCCcEEEEEEC-CCc----EEEeCEE
Confidence            678999999999999988887                   88888 8999988766533333322 453    6899999


Q ss_pred             EeecCCChhhhh-hcCCccccccCc---ceEEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEee
Q 008258          230 IGTDGAGSTVRK-LVGIDLVGEKDL---QKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP  305 (572)
Q Consensus       230 VgADG~~S~VR~-~lg~~~~g~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (572)
                      |+|||.+|.+|+ .+|..+.+...+   ...+.+......  .. ....+.. .....+.+..++++...   ...+.+.
T Consensus       215 V~A~G~~s~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~-~~~~~~~g~~~~~p~~~---~~~~g~v  287 (538)
T 2aqj_A          215 IDCSGMRGLLINQALKEPFIDMSDYLLCDSAVASAVPNDD--AR-DGVEPYT-SSIAMNSGWTWKIPMLG---RFGSGYV  287 (538)
T ss_dssp             EECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECCH--HH-HCCCSSE-EEEECSSEEEEEEEETT---EEEEEEE
T ss_pred             EECCCCchhhHHHHhCCCccccccccccceEEEEecccCC--cc-cCCCCce-eeeecCCceEEEecCCC---ceEEEEE
Confidence            999999999954 567665433221   122222221110  00 0001111 11223333333333321   2222222


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHH
Q 008258          306 FYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQD  385 (572)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~D  385 (572)
                      +..     ...+++...+.+++.++..+. .   ....|.+.....++|.  .|||+|+|||||.++|+.|||+|+|++|
T Consensus       288 ~~~-----~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~~~~~~~~~--~grvvliGDAAh~~~P~~gqG~~~a~~d  356 (538)
T 2aqj_A          288 FSS-----HFTSRDQATADFLKLWGLSDN-Q---PLNQIKFRVGRNKRAW--VNNCVSIGLSSCFLEPLESTGIYFIYAA  356 (538)
T ss_dssp             ECT-----TTSCHHHHHHHHHHHHTCCTT-C---CCEEEECCCEEESCSE--ETTEEECGGGTEECCGGGSCHHHHHHHH
T ss_pred             EcC-----CCCChHHHHHHHHHHhcCCCC-C---CceEEeeccccccccc--cCCEEEEcccccccCcchhccHHHHHHH
Confidence            211     122455566666666643221 1   1122333333445554  5999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          386 AHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       386 A~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      |.+|+..|.   .+...+.+|+.|+++|+++.+.+.+.....+.
T Consensus       357 a~~La~~L~---~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~y~  397 (538)
T 2aqj_A          357 LYQLVKHFP---DTSFDPRLSDAFNAEIVHMFDDCRDFVQAHYF  397 (538)
T ss_dssp             HHHHHHTCC---BTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999998775   34556789999999999998887775555543

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.96  E-value=3.1e-28  Score=266.91  Aligned_cols=340  Identities=11%  Similarity=0.078  Sum_probs=204.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCCCCCCCeeeeChhHHH-HHHhhcchHHH--HHhcCCCccc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAFSTHPQAHFINNRYAL-VFRKLDGLAEE--IERSQPPVDL  114 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~---~Gi~v~viEr~~~~~~~~~a~~l~~rt~e-~l~~l~Gl~~~--l~~~~~~~~~  114 (572)
                      +..+||+||||||+|+++|+.|++   .|++|+|||+.+.+.. +.+..+.+++++ +++.+ |+.+.  +.....+...
T Consensus        23 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~-~~g~~~~p~~~~~~l~~l-Gi~~~~~~~~~~~~~~~  100 (550)
T 2e4g_A           23 GKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTL-GVGEATIPNLQTAFFDFL-GIPEDEWMRECNASYKV  100 (550)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCCC-CCCEECCTHHHHHTHHHH-TCCHHHHHHHTTCEEEC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCcc-ceeeeechhHHHHHHHHh-CCChHHHHHhcCCeEEE
Confidence            345799999999999999999999   9999999999765443 346788899999 99999 88765  5543322211


Q ss_pred             ccce-eeeeCC---------C--CCee-eeecCC---------------------C-c-----------cccc-------
Q 008258          115 WRKF-IYCTSV---------T--GPIL-GSVDHM---------------------Q-P-----------QDFE-------  141 (572)
Q Consensus       115 ~~~~-~~~~~~---------~--G~~~-~~~~~~---------------------~-~-----------~~~~-------  141 (572)
                      -..+ .|....         +  +... ......                     . .           .++.       
T Consensus       101 g~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (550)
T 2e4g_A          101 AIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLD  180 (550)
T ss_dssp             EEEEESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCTT
T ss_pred             eeeEeecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhhc
Confidence            0000 000000         0  0000 000000                     0 0           0000       


Q ss_pred             cccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCcee
Q 008258          142 KVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT  220 (572)
Q Consensus       142 ~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~  220 (572)
                      ........+++++..|.+.|.+.+.+. |+                   +++++ +|++++.++++..+.+... +|+  
T Consensus       181 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~Gv-------------------~i~~~-~V~~i~~~~~g~~~~v~~~-~G~--  237 (550)
T 2e4g_A          181 GSKVTNYAWHFDAHLVADFLRRFATEKLGV-------------------RHVED-RVEHVQRDANGNIESVRTA-TGR--  237 (550)
T ss_dssp             SCBCSCCEEEECHHHHHHHHHHHHHHHSCC-------------------EEEEC-CEEEEEECTTSCEEEEEET-TSC--
T ss_pred             CCCCCCcceEEcHHHHHHHHHHHHHhcCCc-------------------EEEEC-eEeEEEEcCCCCEEEEEEC-CCC--
Confidence            000011235689999999999999888 87                   88999 9999988766533333322 453  


Q ss_pred             eEEEEecEEEeecCCChhh-hhhcCCccccccCc---ceEEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCC
Q 008258          221 ERNIQCNILIGTDGAGSTV-RKLVGIDLVGEKDL---QKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLK  296 (572)
Q Consensus       221 ~~~i~ad~vVgADG~~S~V-R~~lg~~~~g~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (572)
                        +++||+||+|||.+|.+ ++.+|..+.+...+   ...+.+........   ....+... ....+....+.++.+. 
T Consensus       238 --~i~ad~vI~A~G~~S~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~g~~~~ipl~~-  310 (550)
T 2e4g_A          238 --VFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDA---NGVEPFTS-AIAMKSGWTWKIPMLG-  310 (550)
T ss_dssp             --EEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECCHHH---HCCCSSEE-EEECSSEEEEEEECSS-
T ss_pred             --EEECCEEEECCCCchhhHHHHhCCCcccccccccccceEEEeecccCCc---ccCCCcee-eeecCCceEEEccCCC-
Confidence              68999999999999999 56678765433221   12222222111000   00111111 1112222222232221 


Q ss_pred             CCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCC--ceeEEEecCccccceecccccccCCcEEEEecccccCCCC
Q 008258          297 EGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELS--DIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPA  374 (572)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~  374 (572)
                        .....+.+..     ...+++...+.+++.++..+.  ....+     .+.....+++.  .+||+|+|||||.++|+
T Consensus       311 --~~~~g~v~~~-----~~~~~~~~~~~l~~~~~~~p~l~~~~~i-----~~~~~~~~~~~--~~rvvliGDAAh~~~P~  376 (550)
T 2e4g_A          311 --RFGTGYVYSS-----RFATEDEAVREFCEMWHLDPETQPLNRI-----RFRVGRNRRAW--VGNCVSIGTSSCFVEPL  376 (550)
T ss_dssp             --EEEEEEEECT-----TTSCHHHHHHHHHHHTTCCTTTSCCEEE-----ECCCEEESCSE--ETTEEECSTTTEECCGG
T ss_pred             --ccceEEEEec-----CCCChHHHHHHHHHhhCcCcccCCCceE-----EecCCCccccc--cCCEEEEehhhcccCcc
Confidence              1111111111     123555666677777665421  11222     22233344443  59999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258          375 GGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR  429 (572)
Q Consensus       375 ~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~  429 (572)
                      .|||+|+|++||.+|++.|.   ++...+.+|++|+++|+++.+.+.+.....+.
T Consensus       377 ~GqGi~~a~~da~~La~~L~---~~~~~~~~l~~Y~~~~~~~~~~i~~~~~~~y~  428 (550)
T 2e4g_A          377 ESTGIYFVYAALYQLVKHFP---DKSLNPVLTARFNREIETMFDDTRDFIQAHFY  428 (550)
T ss_dssp             GSCHHHHHHHHHHHHHHTCC---CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHhcc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998875   34566889999999999999988877666665

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.96  E-value=4.9e-29  Score=269.56  Aligned_cols=310  Identities=20%  Similarity=0.219  Sum_probs=194.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ...+||+||||||+||++|+.|++.|++|+||||.+.+.. .+...+.+++++.|+.+ |+.+...          .+  
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~-~~~~~~~~~~~~~l~~~-g~~~~~~----------~~--  155 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR-HNVLHLWPFTIHDLRAL-GAKKFYG----------RF--  155 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC-CCEEECCHHHHHHHHTT-THHHHCT----------TT--
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC-CCcccCChhHHHHHHHc-CCccccc----------cc--
Confidence            3458999999999999999999999999999999877632 35567889999999998 8765310          00  


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                          .                    ......+++..+.+.|.+.+.+.|+                   +++++++|+++
T Consensus       156 ----~--------------------~~~~~~~~~~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i  192 (497)
T 2bry_A          156 ----C--------------------TGTLDHISIRQLQLLLLKVALLLGV-------------------EIHWGVKFTGL  192 (497)
T ss_dssp             ----T--------------------CTTCCEEEHHHHHHHHHHHHHHTTC-------------------EEEESCEEEEE
T ss_pred             ----c--------------------ccccccCCHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEE
Confidence                0                    0011246788999999999988776                   89999999999


Q ss_pred             eee---CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCce
Q 008258          201 SAT---DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM  277 (572)
Q Consensus       201 ~~~---~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~  277 (572)
                      +++   ++.+.|++....+|  ++.++++|+||+|||++|.+|+..++.+.|...+.....+... ..+.........+.
T Consensus       193 ~~~~~~~~~~~v~~~~~~~g--~~~~i~ad~VV~A~G~~S~~r~~~~~~~~g~~~~~~~~~l~~~-~~~~~~~~~~~~G~  269 (497)
T 2bry_A          193 QPPPRKGSGWRAQLQPNPPA--QLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNG-RTVEETQVPEISGV  269 (497)
T ss_dssp             ECCCSTTCCBEEEEESCCCH--HHHTCCBSEEEECCCTTCCCTTCEEEEEECSCCEEEEEEEECC-CCHHHHTSCCBCC-
T ss_pred             EEecCCCCEEEEEEEECCCC--CEEEEEcCEEEECCCCCcccccccchhhcCceeEeeeeeeeee-ccccccchhhcCce
Confidence            874   35677776521023  1225889999999999999998887777776544322211100 00000000011111


Q ss_pred             EEEEEecC-----------ceEEEEEecCCCCeEEEEe-ec----------C--CCC-C---CCCCCCHHHHH-------
Q 008258          278 LFFIFNTE-----------AIGVLVAHDLKEGEFILQV-PF----------Y--PPQ-Q---NLEDFSPEICE-------  322 (572)
Q Consensus       278 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~----------~--~~~-~---~~~~~~~~~~~-------  322 (572)
                      .+ .+++.           ....++..+.  +.+.+.. +.          .  .+. .   .....+.+.+.       
T Consensus       270 ~~-~~~~~~f~~~~~~~Gi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  346 (497)
T 2bry_A          270 AR-IYNQKFFQSLLKATGIDLENIVYYKD--ETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAA  346 (497)
T ss_dssp             ----CCSSHHHHHHHHHCCCEEEEEEEES--SEEEEEEEECHHHHHHTTSBSSCCSSHHHHTSTTTBCHHHHHHHHHHHH
T ss_pred             EE-ecChhhhHhHHhhcCCCcccccccCC--CeEEEEeccccccccccceeeccccchHhhhhhccCCHHHHHHhhcccc
Confidence            11 11100           0010111111  1111111 10          0  000 0   00112322211       


Q ss_pred             HHHH-----------HHhCCCCCce-eEEEecCccccceecccccccCCc-EEEEecccc-cCCCCCCCCchhHHHHHHH
Q 008258          323 KLIF-----------KLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQ-IILAGDACH-RFPPAGGFGMNTGVQDAHN  388 (572)
Q Consensus       323 ~~l~-----------~~~~~~~~~~-~i~~~~~w~~~~~~a~~~~~~~gr-V~LiGDAAH-~~~P~~G~G~n~ai~DA~~  388 (572)
                      ++-.           ..++.+...+ ++.....|++..+++++|.  +|| |+|+||||| .++| .|||+|+||+||.+
T Consensus       347 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~a~~~~--~gRr~~l~Gda~~~~~~p-~g~G~n~g~~~a~~  423 (497)
T 2bry_A          347 DFATHGKLGKLEFAQDARGRPDVAAFDFTSMMRAESSARVQEKHG--ARLLLGLVGDCLVEPFWP-LGTGVARGFLAAFD  423 (497)
T ss_dssp             HHHTTTTTCSCCBCBCTTSSBCEEEEECSEEEEESCSEEEEEETT--EEEEEEECGGGTBCCCGG-GCCHHHHHHHHHHH
T ss_pred             ccchhhccccchhhhhccCCCCCceeeeEEEEecchhhHHHHhcC--CcccceEeccccccCcCc-cccchhhHHHHHHH
Confidence            1111           1111111112 3445668899999999998  588 999999999 5666 99999999999999


Q ss_pred             HHHHHHHHhcCCCchhhHhhHHHhhhHHHHHh
Q 008258          389 LAWKIASVLKDIAPASILNTYETERKPIAEFN  420 (572)
Q Consensus       389 La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~  420 (572)
                      |+|+|+.+++|.+..++|    .||+++++.+
T Consensus       424 l~~~l~~~~~g~~~~~~l----~~r~~~~~~l  451 (497)
T 2bry_A          424 AAWMVKRWAEGAGPLEVL----AERESLYQLL  451 (497)
T ss_dssp             HHHHHHHHHTTCCHHHHH----HHHHHHHTTG
T ss_pred             HHHHHHHHhCCCCccchh----hhHHHHhhhh
Confidence            999999999998888888    9999987643

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.94  E-value=7.9e-27  Score=248.10  Aligned_cols=321  Identities=13%  Similarity=0.027  Sum_probs=168.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-C---CeeeeChhHHHHHHhhcchHHHHHhcCCCccccc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-P---QAHFINNRYALVFRKLDGLAEEIERSQPPVDLWR  116 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~-~---~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~  116 (572)
                      .+..||+||||||+||++|+.|+++|++|+||||++.+... +   ....+...+++.++.+ |+.. ......+.....
T Consensus        20 ~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~l-g~~~-~~~~~~~~~~~~   97 (430)
T 3ihm_A           20 HMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVAL-DVNE-WPSEEFGYFGHY   97 (430)
T ss_dssp             ---CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHT-TCCC-SCHHHHCEEEEE
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhc-Chhh-hhhhccccccee
Confidence            34579999999999999999999999999999998733211 1   1233456778887777 5411 000001111100


Q ss_pred             ceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc-
Q 008258          117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH-  195 (572)
Q Consensus       117 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~-  195 (572)
                        ....  ....+         ++.... ......+++..+.+.|.+.+.+.|+                   ++++.. 
T Consensus        98 --~~~~--~~~~~---------~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~Gv-------------------~v~~~~v  144 (430)
T 3ihm_A           98 --YYVG--GPQPM---------RFYGDL-KAPSRAVDYRLYQPMLMRALEARGG-------------------KFCYDAV  144 (430)
T ss_dssp             --EEEC--SSSCE---------EEEEEE-EEEEBEECHHHHHHHHHHHHHHTTC-------------------EEEECCC
T ss_pred             --EEEC--CCCcc---------ccchhc-CCcceeecHHHHHHHHHHHHHHcCC-------------------EEEEEec
Confidence              0100  11001         110000 1122567888999999999998887                   333311 


Q ss_pred             EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCC-ccccccCc-ceEEEEEEecCccccccccC
Q 008258          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI-DLVGEKDL-QKLVSVHFLSKDLGDYLLNE  273 (572)
Q Consensus       196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~-~~~g~~~~-~~~~~~~~~~~~l~~~~~~~  273 (572)
                      ++.++++                   ...++|+||+|||.+|.+|..... ........ +......+..  ..   .. 
T Consensus       145 ~~~~l~~-------------------~~~~ad~VV~AdG~~S~~~~~~~~~~~~~~~~p~r~~~~~~~~g--~~---~~-  199 (430)
T 3ihm_A          145 SAEDLEG-------------------LSEQYDLLVVCTGKYALGKVFEKQSENSPFEKPQRALCVGLFKG--IK---EA-  199 (430)
T ss_dssp             CGGGHHH-------------------HHTTSSEEEECCCCTTGGGGSCBCGGGCCCSSCSSEEEEEEEES--BC---CC-
T ss_pred             chhhhhh-------------------hcccCCEEEECCCCcchHHhccCCCCCCcccCCCeeEEEEEEcc--CC---CC-
Confidence            0011100                   012489999999999988743211 11111111 1222222211  11   01 


Q ss_pred             CCceEEEEEecCc-eEEEEEecCCCCeEE--EEeecCCCC-CCCCC----CCHHHH----HHHHHHHhCC------CCC-
Q 008258          274 RPGMLFFIFNTEA-IGVLVAHDLKEGEFI--LQVPFYPPQ-QNLED----FSPEIC----EKLIFKLVGW------ELS-  334 (572)
Q Consensus       274 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~----~~~~~~----~~~l~~~~~~------~~~-  334 (572)
                      .+....+.+.++. ..++++.....+...  +..+..... +....    -+++..    .+.+....++      ... 
T Consensus       200 ~~~~~~~~~~~~~G~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (430)
T 3ihm_A          200 PIRAVTMSFSPGHGELIEIPTLSFNGMSTALVLENHIGSDLEVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAERIDPAEF  279 (430)
T ss_dssp             SSCCEEEEEETTTEEEEEEEEEETTEEEEEEEEEECTTSSSGGGGTSCTTTCHHHHHHHHHHHHHHHCHHHHTTBCTTTC
T ss_pred             CcCeeeeeecCCCcceEEecccCCCcceEEEEEEecCCCcHHHhccccCCCCHHHHHHHHHHHHHHhCccHHHHHhhchh
Confidence            1222223333332 222222211112222  112211110 11111    144432    3333332211      001 


Q ss_pred             -----ceeEEEecCccccceecccccccCCcEEE-EecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhh
Q 008258          335 -----DIDVIDIKPWVMHAEVAEKFLCCYNQIIL-AGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNT  408 (572)
Q Consensus       335 -----~~~i~~~~~w~~~~~~a~~~~~~~grV~L-iGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~  408 (572)
                           ...+.....|+.......+|.  .||++| +|||||.++|++|||+|+||+||.+|+|+|+..  + ..+.+|.+
T Consensus       280 ~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~GDAah~~~p~~g~G~~~a~~da~~l~~~l~~~--~-~~~~~~~~  354 (430)
T 3ihm_A          280 DLANSSLDILQGGVVPAFRDGHATLN--NGKTIIGLGDIQATVDPVLGQGANMASYAAWILGEEILAH--S-VYDLRFSE  354 (430)
T ss_dssp             EESSSTTSEEEECCCCEEBCSEEECT--TSCEEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHC--S-CCSHHHHH
T ss_pred             ccccCccceeecceeecccccccccC--CCCEEEEecCccccCCCchhhhHHHHHHHHHHHHHHHHhc--C-CHHHHHHH
Confidence                 112222234554444556675  588888 999999999999999999999999999999974  3 36789999


Q ss_pred             HHHhhh-HHHHHhHHHHHH
Q 008258          409 YETERK-PIAEFNTALSVQ  426 (572)
Q Consensus       409 Y~~eR~-~~a~~~~~~s~~  426 (572)
                      |+.+|+ ++++..++++..
T Consensus       355 ~~~~r~~~~~~~~~~~~~~  373 (430)
T 3ihm_A          355 HLERRRQDRVLCATRWTNF  373 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            999999 666666665543

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.65  E-value=2e-15  Score=158.34  Aligned_cols=216  Identities=9%  Similarity=0.109  Sum_probs=118.1

Q ss_pred             cChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEE
Q 008258          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       152 l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      ++...+...|.+.+.+.|+                   +++++++|++++.+++.+. +++   ++|     +++||.||
T Consensus       171 ~~~~~~~~~l~~~~~~~g~-------------------~i~~~~~v~~i~~~~~~~~~v~~---~~g-----~~~a~~vV  223 (405)
T 2gag_B          171 AKHDHVAWAFARKANEMGV-------------------DIIQNCEVTGFIKDGEKVTGVKT---TRG-----TIHAGKVA  223 (405)
T ss_dssp             CCHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEESSSBEEEEEE---TTC-----CEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCC-------------------EEEcCCeEEEEEEeCCEEEEEEe---CCc-----eEECCEEE
Confidence            4445788889999988887                   8899999999988766543 332   244     48899999


Q ss_pred             eecCCCh-hhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCC
Q 008258          231 GTDGAGS-TVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPP  309 (572)
Q Consensus       231 gADG~~S-~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (572)
                      .|+|++| .+++.+|+...........+...    .+...    .+..   +++++...++.+.  ..+.+.+.....+.
T Consensus       224 ~a~G~~s~~l~~~~g~~~~~~~~~~~~~~~~----~~~~~----~~~~---~~~~~~~~y~~p~--~~g~~~ig~~~~~~  290 (405)
T 2gag_B          224 LAGAGHSSVLAEMAGFELPIQSHPLQALVSE----LFEPV----HPTV---VMSNHIHVYVSQA--HKGELVMGAGIDSY  290 (405)
T ss_dssp             ECCGGGHHHHHHHHTCCCCEEEEEEEEEEEE----EBCSC----CCSE---EEETTTTEEEEEC--TTSEEEEEEEECSS
T ss_pred             ECCchhHHHHHHHcCCCCCccccceeEEEec----CCccc----cCce---EEeCCCcEEEEEc--CCCcEEEEeccCCC
Confidence            9999998 68888876543322222222111    11110    0111   1222222222221  23555554332211


Q ss_pred             CCCCCCCCHH---HHHHHHHHHhCCCCCceeEEEecCccccceecccccccCCcEEEEecccccCCCCCCCCch-hHHHH
Q 008258          310 QQNLEDFSPE---ICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMN-TGVQD  385 (572)
Q Consensus       310 ~~~~~~~~~~---~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n-~ai~D  385 (572)
                      .......+++   .+.+.+.+++.. ....++.  ..|.-.    ..+.  .++..++|++. .-.-+...|++ .|+.+
T Consensus       291 ~~~~~~~~~~~~~~l~~~~~~~~p~-l~~~~~~--~~w~g~----~~~t--~d~~p~ig~~~-~~~l~~~~G~~g~G~~~  360 (405)
T 2gag_B          291 NGYGQRGAFHVIQEQMAAAVELFPI-FARAHVL--RTWGGI----VDTT--MDASPIISKTP-IQNLYVNCGWGTGGFKG  360 (405)
T ss_dssp             CCCSSCCCTHHHHHHHHHHHHHCGG-GGGCEEC--EEEEEE----EEEE--TTSCCEEEECS-SBTEEEEECCGGGCSTT
T ss_pred             CccccCCCHHHHHHHHHHHHHhCCc-cccCCcc--eEEeec----cccC--CCCCCEecccC-CCCEEEEecCCCchhhH
Confidence            1111122222   333444444431 1122222  234211    1112  47888999965 11112334555 68888


Q ss_pred             HHHHHHHHHHHhcCCCchhhHhhHHHhhhHHH
Q 008258          386 AHNLAWKIASVLKDIAPASILNTYETERKPIA  417 (572)
Q Consensus       386 A~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a  417 (572)
                      |.++||+|+..+.+...+..++.|+.+|.+..
T Consensus       361 a~~~g~~la~~i~g~~~~~~~~~~~~~R~~~~  392 (405)
T 2gag_B          361 TPGAGFTLAHTIANDEPHELNKPFSLERFETG  392 (405)
T ss_dssp             HHHHHHHHHHHHHHTSCCTTTTTSCSTHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCCccccccCcchhcCC
Confidence            88999999988876656668899999997653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.59  E-value=1.3e-14  Score=142.00  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=34.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+||+|||||||||++|+.|+++|++|+||||.+.+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            389999999999999999999999999999998766

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.55  E-value=4e-14  Score=147.27  Aligned_cols=70  Identities=20%  Similarity=0.297  Sum_probs=54.7

Q ss_pred             cccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEE
Q 008258          150 AHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNIL  229 (572)
Q Consensus       150 ~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~v  229 (572)
                      ..+....+...|.+.+.+.|+                   +++++++|++++.+++++.++..   +|     +++||.|
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g~-------------------~i~~~~~v~~i~~~~~~~~v~~~---~g-----~~~a~~v  211 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLGA-------------------EIFEHTPVLHVERDGEALFIKTP---SG-----DVWANHV  211 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTC-------------------EEETTCCCCEEECSSSSEEEEET---TE-----EEEEEEE
T ss_pred             eEEcHHHHHHHHHHHHHHCCC-------------------EEEcCCcEEEEEEECCEEEEEcC---Cc-----eEEcCEE
Confidence            345567788899999988887                   88889999999887777755432   33     5899999


Q ss_pred             EeecCCChh-hhhhcCCc
Q 008258          230 IGTDGAGST-VRKLVGID  246 (572)
Q Consensus       230 VgADG~~S~-VR~~lg~~  246 (572)
                      |.|+|..|. +.+.++..
T Consensus       212 V~A~G~~s~~l~~~~~~~  229 (382)
T 1ryi_A          212 VVASGVWSGMFFKQLGLN  229 (382)
T ss_dssp             EECCGGGTHHHHHHTTCC
T ss_pred             EECCChhHHHHHHhcCCC
Confidence            999999987 77777653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.54  E-value=7.5e-14  Score=145.29  Aligned_cols=69  Identities=14%  Similarity=0.231  Sum_probs=54.1

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~v  229 (572)
                      .++...+.+.|.+.+.+.|+                   +++++++|++++.++++++ |+..   +|     +++||.|
T Consensus       145 ~~~~~~l~~~l~~~~~~~Gv-------------------~i~~~~~v~~i~~~~~~v~gv~~~---~g-----~i~a~~V  197 (382)
T 1y56_B          145 KADPFEATTAFAVKAKEYGA-------------------KLLEYTEVKGFLIENNEIKGVKTN---KG-----IIKTGIV  197 (382)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEESSSBEEEEEET---TE-----EEECSEE
T ss_pred             eECHHHHHHHHHHHHHHCCC-------------------EEECCceEEEEEEECCEEEEEEEC---Cc-----EEECCEE
Confidence            35567788889999988887                   8899999999998877766 5432   33     5899999


Q ss_pred             EeecCCCh-hhhhhcCCc
Q 008258          230 IGTDGAGS-TVRKLVGID  246 (572)
Q Consensus       230 VgADG~~S-~VR~~lg~~  246 (572)
                      |.|+|..| .+.+.+|..
T Consensus       198 V~A~G~~s~~l~~~~g~~  215 (382)
T 1y56_B          198 VNATNAWANLINAMAGIK  215 (382)
T ss_dssp             EECCGGGHHHHHHHHTCC
T ss_pred             EECcchhHHHHHHHcCCC
Confidence            99999998 467766654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.44  E-value=4.1e-12  Score=132.86  Aligned_cols=66  Identities=9%  Similarity=0.112  Sum_probs=52.0

Q ss_pred             ChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEee
Q 008258          153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGT  232 (572)
Q Consensus       153 ~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgA  232 (572)
                      ....+...|.+.+.+.|+                   +++++++|++++.++++++|+.   +++     +++||.||.|
T Consensus       151 ~~~~~~~~l~~~a~~~Gv-------------------~i~~~~~V~~i~~~~~~v~v~t---~~g-----~i~a~~VV~A  203 (397)
T 2oln_A          151 DVRGTLAALFTLAQAAGA-------------------TLRAGETVTELVPDADGVSVTT---DRG-----TYRAGKVVLA  203 (397)
T ss_dssp             EHHHHHHHHHHHHHHTTC-------------------EEEESCCEEEEEEETTEEEEEE---SSC-----EEEEEEEEEC
T ss_pred             cHHHHHHHHHHHHHHcCC-------------------EEECCCEEEEEEEcCCeEEEEE---CCC-----EEEcCEEEEc
Confidence            345677888888888887                   8999999999998888876543   233     5899999999


Q ss_pred             cCCCh-hhhhhcCC
Q 008258          233 DGAGS-TVRKLVGI  245 (572)
Q Consensus       233 DG~~S-~VR~~lg~  245 (572)
                      +|++| .+++.+|.
T Consensus       204 ~G~~s~~l~~~~g~  217 (397)
T 2oln_A          204 CGPYTNDLLEPLGA  217 (397)
T ss_dssp             CGGGHHHHHGGGTC
T ss_pred             CCcChHHHhhhcCC
Confidence            99984 57777774

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.43  E-value=3e-12  Score=133.33  Aligned_cols=173  Identities=14%  Similarity=0.203  Sum_probs=96.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CC--CCeeeeCh------hHHHH-HHhhcchHHHHHhc-CC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--TH--PQAHFINN------RYALV-FRKLDGLAEEIERS-QP  110 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~--~~--~~a~~l~~------rt~e~-l~~l~Gl~~~l~~~-~~  110 (572)
                      ++||+|||||++|+++|+.|+++|++|+||||.....  ..  ..+..+.+      ...++ .+.+ .+++++.+. +.
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~l~~~~~~   81 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQ-ELWYELEKETHH   81 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHH-HHHHHHHHHCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHH-HHHHHHHHHhCC
Confidence            4799999999999999999999999999999986543  11  11112211      11111 2222 344444332 11


Q ss_pred             Ccccccc-eeeeeCCC--------------CCeeeeecC---------CCcccc-ccccCCccccccChhhHHHHHHHHH
Q 008258          111 PVDLWRK-FIYCTSVT--------------GPILGSVDH---------MQPQDF-EKVVSPVSVAHFSQYKLNKLLLKQL  165 (572)
Q Consensus       111 ~~~~~~~-~~~~~~~~--------------G~~~~~~~~---------~~~~~~-~~~~sp~~~~~l~q~~L~~~L~~~~  165 (572)
                      +.-.... ........              |.....++.         ...... .....+. ...++...+...|.+.+
T Consensus        82 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~  160 (389)
T 2gf3_A           82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPN-SGVLFSENCIRAYRELA  160 (389)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETT-CEEEEHHHHHHHHHHHH
T ss_pred             cceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCC-CcEEeHHHHHHHHHHHH
Confidence            1100000 00111000              100000000         000000 0000011 12334467888899999


Q ss_pred             HhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh-hhhhcC
Q 008258          166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VRKLVG  244 (572)
Q Consensus       166 ~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~-VR~~lg  244 (572)
                      .+.|+                   +++++++|++++.+++++.++..   +|     +++||.||.|+|+.|. +.+.++
T Consensus       161 ~~~Gv-------------------~i~~~~~v~~i~~~~~~~~v~~~---~g-----~~~a~~vV~A~G~~~~~l~~~~g  213 (389)
T 2gf3_A          161 EARGA-------------------KVLTHTRVEDFDISPDSVKIETA---NG-----SYTADKLIVSMGAWNSKLLSKLN  213 (389)
T ss_dssp             HHTTC-------------------EEECSCCEEEEEECSSCEEEEET---TE-----EEEEEEEEECCGGGHHHHGGGGT
T ss_pred             HHCCC-------------------EEEcCcEEEEEEecCCeEEEEeC---CC-----EEEeCEEEEecCccHHHHhhhhc
Confidence            88887                   88999999999988777665432   32     5899999999999875 445555

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.43  E-value=9.2e-13  Score=138.66  Aligned_cols=144  Identities=18%  Similarity=0.258  Sum_probs=90.1

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------CCeeeeC-------------hhHHHHHHhhc
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQAHFIN-------------NRYALVFRKLD   99 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~------~~a~~l~-------------~rt~e~l~~l~   99 (572)
                      |++.++||+||||||+|+++|+.|+++|++|+||||.+.+...      ++....+             ......+..+ 
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~-  101 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARY-  101 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHS-
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhc-
Confidence            3456789999999999999999999999999999998865210      1111110             0011222222 


Q ss_pred             chH---HHHHhcCCCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccC
Q 008258          100 GLA---EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSE  176 (572)
Q Consensus       100 Gl~---~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~  176 (572)
                      ...   +.+...+.+..        ....|.                    .+.......+.+.|.+.+.+.|+      
T Consensus       102 ~~~~~~~~~~~~Gi~~~--------~~~~g~--------------------~~~~~~~~~l~~~L~~~l~~~Gv------  147 (417)
T 3v76_A          102 RPQDFVALVERHGIGWH--------EKTLGQ--------------------LFCDHSAKDIIRMLMAEMKEAGV------  147 (417)
T ss_dssp             CHHHHHHHHHHTTCCEE--------ECSTTE--------------------EEESSCHHHHHHHHHHHHHHHTC------
T ss_pred             CHHHHHHHHHHcCCCcE--------EeeCCE--------------------EeeCCCHHHHHHHHHHHHHHCCC------
Confidence            111   11111111110        000111                    11123456788889999988887      


Q ss_pred             CcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          177 GTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       177 ~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                                   +++++++|++++.+++++.|+..   +|     +++||.||.|+|.+|.
T Consensus       148 -------------~i~~~~~V~~i~~~~~~~~V~~~---~g-----~i~ad~VIlAtG~~S~  188 (417)
T 3v76_A          148 -------------QLRLETSIGEVERTASGFRVTTS---AG-----TVDAASLVVASGGKSI  188 (417)
T ss_dssp             -------------EEECSCCEEEEEEETTEEEEEET---TE-----EEEESEEEECCCCSSC
T ss_pred             -------------EEEECCEEEEEEEeCCEEEEEEC---Cc-----EEEeeEEEECCCCccC
Confidence                         89999999999988888766543   33     6899999999999993

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.41  E-value=2.4e-12  Score=132.75  Aligned_cols=72  Identities=11%  Similarity=0.167  Sum_probs=56.4

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCe-EEEEEEeccCCceeeEEEEecEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNIL  229 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~v  229 (572)
                      .++...+...|.+.+++.|+                   +++++++|++++.++++ +.|++.   +|+  ..+++||.|
T Consensus       146 ~~~~~~~~~~l~~~~~~~Gv-------------------~i~~~~~v~~i~~~~~~~~~v~~~---~g~--~~~~~a~~V  201 (369)
T 3dme_A          146 IVDSHALMLAYQGDAESDGA-------------------QLVFHTPLIAGRVRPEGGFELDFG---GAE--PMTLSCRVL  201 (369)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEECTTSSEEEEEC---TTS--CEEEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHCCC-------------------EEECCCEEEEEEEcCCceEEEEEC---CCc--eeEEEeCEE
Confidence            35566788899999999887                   89999999999988766 666543   442  347899999


Q ss_pred             EeecCCCh-hhhhhc-CCc
Q 008258          230 IGTDGAGS-TVRKLV-GID  246 (572)
Q Consensus       230 VgADG~~S-~VR~~l-g~~  246 (572)
                      |.|+|++| .+.+.+ |++
T Consensus       202 V~A~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          202 INAAGLHAPGLARRIEGIP  220 (369)
T ss_dssp             EECCGGGHHHHHHTEETSC
T ss_pred             EECCCcchHHHHHHhcCCC
Confidence            99999999 466777 764

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.39  E-value=5.6e-12  Score=130.67  Aligned_cols=69  Identities=19%  Similarity=0.352  Sum_probs=54.0

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      .++...+...|.+.+++.|+                   +++++++|++++.+++++.|+..   +|     +++||.||
T Consensus       150 ~~~~~~~~~~l~~~a~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~t~---~g-----~i~a~~VV  202 (381)
T 3nyc_A          150 DIDTDALHQGYLRGIRRNQG-------------------QVLCNHEALEIRRVDGAWEVRCD---AG-----SYRAAVLV  202 (381)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEESSCCCCEEEEETTEEEEECS---SE-----EEEESEEE
T ss_pred             eECHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEEEEeCCeEEEEeC---CC-----EEEcCEEE
Confidence            34556788889999988887                   88999999999988888655432   33     68999999


Q ss_pred             eecCCChh-hhhhcCCc
Q 008258          231 GTDGAGST-VRKLVGID  246 (572)
Q Consensus       231 gADG~~S~-VR~~lg~~  246 (572)
                      .|+|++|. +.+.+|..
T Consensus       203 ~A~G~~s~~l~~~~g~~  219 (381)
T 3nyc_A          203 NAAGAWCDAIAGLAGVR  219 (381)
T ss_dssp             ECCGGGHHHHHHHHTCC
T ss_pred             ECCChhHHHHHHHhCCC
Confidence            99999984 56666653

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.38  E-value=1.3e-11  Score=114.10  Aligned_cols=118  Identities=22%  Similarity=0.310  Sum_probs=86.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      +||+||||||+|+.+|..|++.|.+|+|+|+.+.....  ..           .+              ..         
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~--~~-----------~~--------------~~---------   45 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKG--VS-----------RV--------------PN---------   45 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTT--CS-----------CC--------------CC---------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccC--ch-----------hh--------------hc---------
Confidence            68999999999999999999999999999998632110  00           00              00         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                      ..+             +     |   ..+....+.+.|.+.+++.|+                   +++++ ++++++.+
T Consensus        46 ~~~-------------~-----~---~~~~~~~~~~~l~~~~~~~gv-------------------~v~~~-~v~~i~~~   84 (180)
T 2ywl_A           46 YPG-------------L-----L---DEPSGEELLRRLEAHARRYGA-------------------EVRPG-VVKGVRDM   84 (180)
T ss_dssp             STT-------------C-----T---TCCCHHHHHHHHHHHHHHTTC-------------------EEEEC-CCCEEEEC
T ss_pred             cCC-------------C-----c---CCCCHHHHHHHHHHHHHHcCC-------------------EEEeC-EEEEEEEc
Confidence            000             0     0   013456778888888888887                   88888 99999887


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCc
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID  246 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~  246 (572)
                      ++++.+++.   +|     ++++|+||.|+|.++.+++.+|++
T Consensus        85 ~~~~~v~~~---~g-----~i~ad~vI~A~G~~~~~~~~~g~~  119 (180)
T 2ywl_A           85 GGVFEVETE---EG-----VEKAERLLLCTHKDPTLPSLLGLT  119 (180)
T ss_dssp             SSSEEEECS---SC-----EEEEEEEEECCTTCCHHHHHHTCC
T ss_pred             CCEEEEEEC---CC-----EEEECEEEECCCCCCCccccCCCC
Confidence            777666543   44     589999999999999887777653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.35  E-value=4.7e-12  Score=134.81  Aligned_cols=166  Identities=18%  Similarity=0.240  Sum_probs=92.3

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCCeeeeChhHH-HHHHhhc---c-hHHHHHhc
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRYA-LVFRKLD---G-LAEEIERS  108 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~------~~~a~~l~~rt~-e~l~~l~---G-l~~~l~~~  108 (572)
                      ..+++||+|||||++|+++|+.|++.|.+|+||||.+.+..      .++....+.... ++++.++   . +...+...
T Consensus        23 ~~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (447)
T 2i0z_A           23 NAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF  102 (447)
T ss_dssp             --CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred             ccCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhc
Confidence            34568999999999999999999999999999999875421      001111111001 1111110   0 00000000


Q ss_pred             CCCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCccccccccccc
Q 008258          109 QPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQG  188 (572)
Q Consensus       109 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~  188 (572)
                      . +.+..   .+.. ..|-.+...      .... .-|   ..-....+.+.|.+.+.+.|+                  
T Consensus       103 ~-~~~~~---~~~~-~~G~~~~~~------~~g~-~~p---~~~~~~~l~~~L~~~~~~~GV------------------  149 (447)
T 2i0z_A          103 N-NEDII---TFFE-NLGVKLKEE------DHGR-MFP---VSNKAQSVVDALLTRLKDLGV------------------  149 (447)
T ss_dssp             C-HHHHH---HHHH-HTTCCEEEC------GGGE-EEE---TTCCHHHHHHHHHHHHHHTTC------------------
T ss_pred             C-HHHHH---HHHH-hcCCceEEe------eCCE-EEC---CCCCHHHHHHHHHHHHHHCCC------------------
Confidence            0 00000   0000 001000000      0000 000   001245777888899988887                  


Q ss_pred             ceEEeccEEEEEeeeCCe-EEEEEEeccCCceeeEEEEecEEEeecCCCh-----------hhhhhcCCc
Q 008258          189 REILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS-----------TVRKLVGID  246 (572)
Q Consensus       189 ~~i~~g~~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S-----------~VR~~lg~~  246 (572)
                       +++++++|+++..+++. +.|++.   +|+    +++||.||.|+|..|           .+++++|..
T Consensus       150 -~i~~~~~V~~i~~~~~~v~~V~~~---~G~----~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~  211 (447)
T 2i0z_A          150 -KIRTNTPVETIEYENGQTKAVILQ---TGE----VLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHT  211 (447)
T ss_dssp             -EEECSCCEEEEEEETTEEEEEEET---TCC----EEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred             -EEEeCcEEEEEEecCCcEEEEEEC---CCC----EEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCC
Confidence             89999999999877776 444442   453    589999999999999           677777654

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.32  E-value=2.1e-11  Score=121.73  Aligned_cols=143  Identities=14%  Similarity=0.222  Sum_probs=91.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCC--C-----CeeeeChhHHHHHHhhcchHHHHHhcCCCcc
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTH--P-----QAHFINNRYALVFRKLDGLAEEIERSQPPVD  113 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~~~~--~-----~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~  113 (572)
                      .++||+||||||+|+++|+.|+++ |++|+||||.+.+...  .     ....+...+.+.|+.+ |+         +..
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~-G~---------~~~  107 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEI-GV---------AYD  107 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHH-TC---------CCE
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHc-CC---------Ccc
Confidence            457999999999999999999998 9999999998765311  0     1122223334444443 32         110


Q ss_pred             cccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHh-cCceeeccCCcccccccccccceEE
Q 008258          114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREIL  192 (572)
Q Consensus       114 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~  192 (572)
                      .          .+..                    .....+..+...|.+.+.+ .|+                   +++
T Consensus       108 ~----------~~~~--------------------~~~~~~~~~~~~l~~~~~~~~gv-------------------~i~  138 (284)
T 1rp0_A          108 E----------QDTY--------------------VVVKHAALFTSTIMSKLLARPNV-------------------KLF  138 (284)
T ss_dssp             E----------CSSE--------------------EEESCHHHHHHHHHHHHHTSTTE-------------------EEE
T ss_pred             c----------CCCE--------------------EEecCHHHHHHHHHHHHHhcCCC-------------------EEE
Confidence            0          0100                    0112345677777787765 465                   899


Q ss_pred             eccEEEEEeeeCCeEE-EEEEec----c--CC-ceeeEEEEecEEEeecCCChhhhhhc
Q 008258          193 MGHECVSVSATDQCIN-VIASFL----K--EG-KCTERNIQCNILIGTDGAGSTVRKLV  243 (572)
Q Consensus       193 ~g~~v~~v~~~~~~v~-v~~~~~----~--~g-~~~~~~i~ad~vVgADG~~S~VR~~l  243 (572)
                      ++++++++..+++.+. +++...    +  ++ ..+..+++||+||.|+|.+|.++...
T Consensus       139 ~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          139 NAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             ETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             cCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence            9999999998777552 333210    1  11 11235799999999999999887653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.32  E-value=1.8e-11  Score=137.20  Aligned_cols=70  Identities=10%  Similarity=0.181  Sum_probs=54.4

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      .+....+...|.+.+.+.|+                   +|+++++|++++.+++++.|+..   +|.    +++||.||
T Consensus       413 ~v~p~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~l~~~~~~v~V~t~---~G~----~i~Ad~VV  466 (676)
T 3ps9_A          413 WLCPAELTRNVLELAQQQGL-------------------QIYYQYQLQNFSRKDDCWLLNFA---GDQ----QATHSVVV  466 (676)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEEESCCEEEEEEETTEEEEEET---TSC----EEEESEEE
T ss_pred             eeCHHHHHHHHHHHHHhCCC-------------------EEEeCCeeeEEEEeCCeEEEEEC---CCC----EEECCEEE
Confidence            34556788889999988887                   89999999999998888766543   443    58999999


Q ss_pred             eecCCChh-hhhhcCCc
Q 008258          231 GTDGAGST-VRKLVGID  246 (572)
Q Consensus       231 gADG~~S~-VR~~lg~~  246 (572)
                      .|+|..|. +.+..+++
T Consensus       467 lAtG~~s~~l~~~~~lp  483 (676)
T 3ps9_A          467 LANGHQISRFSQTSTLP  483 (676)
T ss_dssp             ECCGGGGGCSTTTTTCS
T ss_pred             ECCCcchhccccccCCc
Confidence            99999986 44444443

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.32  E-value=8.7e-10  Score=118.98  Aligned_cols=73  Identities=14%  Similarity=0.038  Sum_probs=56.4

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      .++...+...|.+.+.+.|+                   +++.+++|++++.+++.+.|++.+..+|  ++.+++||.||
T Consensus       145 ~v~~~~l~~~l~~~a~~~Gv-------------------~i~~~~~V~~l~~~~~~~~V~~~d~~~G--~~~~i~A~~VV  203 (501)
T 2qcu_A          145 WVDDARLVLANAQMVVRKGG-------------------EVLTRTRATSARRENGLWIVEAEDIDTG--KKYSWQARGLV  203 (501)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEEETTEEEEEEEETTTC--CEEEEEESCEE
T ss_pred             EEcHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEeCCEEEEEEEECCCC--CEEEEECCEEE
Confidence            35677888899999999887                   8899999999998776666766532234  34579999999


Q ss_pred             eecCCChh-hhhh-cC
Q 008258          231 GTDGAGST-VRKL-VG  244 (572)
Q Consensus       231 gADG~~S~-VR~~-lg  244 (572)
                      .|+|.+|. +++. ++
T Consensus       204 ~AtG~~s~~l~~~~l~  219 (501)
T 2qcu_A          204 NATGPWVKQFFDDGMH  219 (501)
T ss_dssp             ECCGGGHHHHHHHHTC
T ss_pred             ECCChhHHHHHHHhcc
Confidence            99999986 4554 54

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.31  E-value=1.7e-10  Score=126.11  Aligned_cols=75  Identities=15%  Similarity=0.037  Sum_probs=58.9

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL  229 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~v  229 (572)
                      .++...|...|.+.+.+.|+                   +++++++|+++..+++++. |++.+..+|  +..+++||.|
T Consensus       166 ~vd~~~l~~~L~~~a~~~G~-------------------~i~~~~~V~~l~~~~g~v~gV~~~d~~tg--~~~~i~A~~V  224 (561)
T 3da1_A          166 RTDDARLTLEIMKEAVARGA-------------------VALNYMKVESFIYDQGKVVGVVAKDRLTD--TTHTIYAKKV  224 (561)
T ss_dssp             ECCHHHHHHHHHHHHHHTTC-------------------EEEESEEEEEEEEETTEEEEEEEEETTTC--CEEEEEEEEE
T ss_pred             eEcHHHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEEEcCCeEEEEEEEEcCCC--ceEEEECCEE
Confidence            45667888889999989887                   8999999999998887754 666532233  3457999999


Q ss_pred             EeecCCCh-hhhhhcCCc
Q 008258          230 IGTDGAGS-TVRKLVGID  246 (572)
Q Consensus       230 VgADG~~S-~VR~~lg~~  246 (572)
                      |.|+|..| .+++.+|..
T Consensus       225 V~AaG~~s~~l~~~~g~~  242 (561)
T 3da1_A          225 VNAAGPWVDTLREKDRSK  242 (561)
T ss_dssp             EECCGGGHHHHHHTTTCC
T ss_pred             EECCCcchHHHHHhcCCC
Confidence            99999999 578777654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.29  E-value=2.3e-11  Score=136.41  Aligned_cols=70  Identities=10%  Similarity=0.068  Sum_probs=52.8

Q ss_pred             cChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEe
Q 008258          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (572)
Q Consensus       152 l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVg  231 (572)
                      ++...+...|.+.+.+.|+                   +|+++++|++++.+++++.|+..   +|.   .+++||.||.
T Consensus       409 v~p~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~l~~~~~~v~V~t~---~G~---~~i~Ad~VVl  463 (689)
T 3pvc_A          409 LCPSDLTHALMMLAQQNGM-------------------TCHYQHELQRLKRIDSQWQLTFG---QSQ---AAKHHATVIL  463 (689)
T ss_dssp             ECHHHHHHHHHHHHHHTTC-------------------EEEESCCEEEEEECSSSEEEEEC----CC---CCEEESEEEE
T ss_pred             ECHHHHHHHHHHHHHhCCC-------------------EEEeCCeEeEEEEeCCeEEEEeC---CCc---EEEECCEEEE
Confidence            4456788889999988887                   89999999999998888766553   331   1478999999


Q ss_pred             ecCCChh-hhhhcCCc
Q 008258          232 TDGAGST-VRKLVGID  246 (572)
Q Consensus       232 ADG~~S~-VR~~lg~~  246 (572)
                      |+|..|. +.+.++++
T Consensus       464 AtG~~s~~l~~~~~lp  479 (689)
T 3pvc_A          464 ATGHRLPEWEQTHHLP  479 (689)
T ss_dssp             CCGGGTTCSTTTTTSC
T ss_pred             CCCcchhccccccCCc
Confidence            9999985 44444443

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.29  E-value=8.5e-12  Score=135.07  Aligned_cols=68  Identities=16%  Similarity=0.178  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeec
Q 008258          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD  233 (572)
Q Consensus       155 ~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgAD  233 (572)
                      ..+.+.|.+.+.+.|+                   +++++++|++++.+++.+. |++.   +|+    +++||+||.||
T Consensus       220 ~~l~~~L~~~l~~~Gv-------------------~I~~~t~V~~I~~~~~~v~gV~l~---~G~----~i~Ad~VVlA~  273 (549)
T 3nlc_A          220 VTMIEKMRATIIELGG-------------------EIRFSTRVDDLHMEDGQITGVTLS---NGE----EIKSRHVVLAV  273 (549)
T ss_dssp             HHHHHHHHHHHHHTTC-------------------EEESSCCEEEEEESSSBEEEEEET---TSC----EEECSCEEECC
T ss_pred             HHHHHHHHHHHHhcCC-------------------EEEeCCEEEEEEEeCCEEEEEEEC---CCC----EEECCEEEECC
Confidence            5677778888888887                   8999999999998777654 4443   553    68999999999


Q ss_pred             CCChh----hhhhcCCccc
Q 008258          234 GAGST----VRKLVGIDLV  248 (572)
Q Consensus       234 G~~S~----VR~~lg~~~~  248 (572)
                      |.+|.    ..+.+|+.+.
T Consensus       274 G~~s~~~~~~l~~~Gi~~~  292 (549)
T 3nlc_A          274 GHSARDTFEMLHERGVYME  292 (549)
T ss_dssp             CTTCHHHHHHHHHTTCCCE
T ss_pred             CCChhhHHHHHHHcCCCcc
Confidence            99994    3445566543

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.27  E-value=4e-11  Score=121.47  Aligned_cols=143  Identities=17%  Similarity=0.282  Sum_probs=91.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCC-------CCCeeeeChhHHHHHHhhcchHHHHHhcCCCc
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFST-------HPQAHFINNRYALVFRKLDGLAEEIERSQPPV  112 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~~-------~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~  112 (572)
                      .++||+||||||+||++|+.|+++  |++|+||||.+.+..       ......+.+...+.|+++ |+         +.
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~-Gv---------~~  147 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEV-GV---------PY  147 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHH-TC---------CC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHc-CC---------cc
Confidence            468999999999999999999998  999999999876531       112233345555666555 43         11


Q ss_pred             ccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceE
Q 008258          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI  191 (572)
Q Consensus       113 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i  191 (572)
                      ..          .|...                    .......+...|.+.+.+. |+                   ++
T Consensus       148 ~~----------~G~~~--------------------~~~~~~d~~~~L~~~a~~~~gV-------------------~i  178 (344)
T 3jsk_A          148 ED----------EGDYV--------------------VVKHAALFTSTVLSKVLQRPNV-------------------KL  178 (344)
T ss_dssp             EE----------CSSEE--------------------EESCHHHHHHHHHHHHHTCTTE-------------------EE
T ss_pred             cc----------cCCeE--------------------EEecHHHHHHHHHHHHHhCCCC-------------------EE
Confidence            00          01100                    0112345667888888763 55                   88


Q ss_pred             EeccEEEEEeeeCC-------------------eEE-EEEEec---cCCc----eeeEEEEecEEEeecCCChhhhhhc
Q 008258          192 LMGHECVSVSATDQ-------------------CIN-VIASFL---KEGK----CTERNIQCNILIGTDGAGSTVRKLV  243 (572)
Q Consensus       192 ~~g~~v~~v~~~~~-------------------~v~-v~~~~~---~~g~----~~~~~i~ad~vVgADG~~S~VR~~l  243 (572)
                      +++++++++..+++                   .|. |.+.+.   .++.    ....+++|++||+|+|..|++++.+
T Consensus       179 ~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~  257 (344)
T 3jsk_A          179 FNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAFS  257 (344)
T ss_dssp             EETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCHH
T ss_pred             EeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHHH
Confidence            89999998876652                   221 111110   1121    1345899999999999999976544

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.25  E-value=3.9e-11  Score=125.64  Aligned_cols=141  Identities=18%  Similarity=0.270  Sum_probs=85.6

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCCee----------eeC--hh-HHHHHHhhc--c
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAH----------FIN--NR-YALVFRKLD--G  100 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~------~~~a~----------~l~--~r-t~e~l~~l~--G  100 (572)
                      .++||+||||||+|+++|+.|+++|.+|+||||.+.+..      .++..          .+.  +. ....+..+.  .
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence            468999999999999999999999999999999876421      00000          000  00 001111110  0


Q ss_pred             hHHHHHhcCCCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCccc
Q 008258          101 LAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEG  180 (572)
Q Consensus       101 l~~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~  180 (572)
                      +.+.+...+.+..        ....|..           +     |.   . ....+.+.|.+.+++.|+          
T Consensus        83 ~~~~~~~~Gi~~~--------~~~~g~~-----------~-----p~---~-~~~~l~~~L~~~~~~~Gv----------  124 (401)
T 2gqf_A           83 FISLVAEQGITYH--------EKELGQL-----------F-----CD---E-GAEQIVEMLKSECDKYGA----------  124 (401)
T ss_dssp             HHHHHHHTTCCEE--------ECSTTEE-----------E-----ET---T-CTHHHHHHHHHHHHHHTC----------
T ss_pred             HHHHHHhCCCceE--------ECcCCEE-----------c-----cC---C-CHHHHHHHHHHHHHHCCC----------
Confidence            1111111111110        0000110           0     10   1 456777888888888887          


Q ss_pred             ccccccccceEEeccEEEEEeee----CCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          181 LHNHLLQGREILMGHECVSVSAT----DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       181 ~~~~~~~~~~i~~g~~v~~v~~~----~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                               +++++++++++..+    ++++.++..   ++     +++||.||.|+|.+|
T Consensus       125 ---------~i~~~~~v~~i~~~~~g~~~~~~v~~~---~g-----~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          125 ---------KILLRSEVSQVERIQNDEKVRFVLQVN---ST-----QWQCKNLIVATGGLS  168 (401)
T ss_dssp             ---------EEECSCCEEEEEECCSCSSCCEEEEET---TE-----EEEESEEEECCCCSS
T ss_pred             ---------EEEeCCEEEEEEcccCcCCCeEEEEEC---CC-----EEECCEEEECCCCcc
Confidence                     89999999999876    555655432   32     589999999999999

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.23  E-value=2.1e-11  Score=129.24  Aligned_cols=62  Identities=10%  Similarity=0.165  Sum_probs=50.3

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc---EEEEEeeeCCeEE-EEEEeccCCceeeEEEEe
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH---ECVSVSATDQCIN-VIASFLKEGKCTERNIQC  226 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~---~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~a  226 (572)
                      .+....+...|.+.+++.|+                   ++++++   +|++++.++++++ |++.   +|+    +++|
T Consensus       157 ~~~~~~~~~~L~~~a~~~Gv-------------------~i~~~t~~~~V~~i~~~~~~v~gV~t~---~G~----~i~A  210 (438)
T 3dje_A          157 WAHARNALVAAAREAQRMGV-------------------KFVTGTPQGRVVTLIFENNDVKGAVTA---DGK----IWRA  210 (438)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEEESTTTTCEEEEEEETTEEEEEEET---TTE----EEEC
T ss_pred             EecHHHHHHHHHHHHHhcCC-------------------EEEeCCcCceEEEEEecCCeEEEEEEC---CCC----EEEC
Confidence            34455788889999998887                   899999   9999998888876 5543   553    6899


Q ss_pred             cEEEeecCCChh
Q 008258          227 NILIGTDGAGST  238 (572)
Q Consensus       227 d~vVgADG~~S~  238 (572)
                      |.||.|+|+.|.
T Consensus       211 d~VV~AtG~~s~  222 (438)
T 3dje_A          211 ERTFLCAGASAG  222 (438)
T ss_dssp             SEEEECCGGGGG
T ss_pred             CEEEECCCCChh
Confidence            999999999884

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.20  E-value=1e-10  Score=128.25  Aligned_cols=179  Identities=15%  Similarity=0.160  Sum_probs=96.3

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--CeeeeChhHHHHHHhhcchHH-------HHHhcCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QAHFINNRYALVFRKLDGLAE-------EIERSQP  110 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~--~a~~l~~rt~e~l~~l~Gl~~-------~l~~~~~  110 (572)
                      ...++||||||||++||++|+.|++.|.+|+||||.+.+....  .+..++....+..+.+ |+.+       .+.+.+.
T Consensus       118 ~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~-g~~ds~~~~~~~~~~~~~  196 (566)
T 1qo8_A          118 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAH-GVEDKVEWFIEDAMKGGR  196 (566)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHT-TCCCCHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHh-CCCCCHHHHHHHHHHhcC
Confidence            3456899999999999999999999999999999988653211  1111211111112222 2110       0000000


Q ss_pred             Cc---ccccc--------eeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcc
Q 008258          111 PV---DLWRK--------FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTE  179 (572)
Q Consensus       111 ~~---~~~~~--------~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~  179 (572)
                      ..   .....        +.|... .|-.+..........+.....+. ...+....+...|.+.+.+.|+         
T Consensus       197 ~~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~~~g~~~~r~~~~~-~~~~~~~~l~~~L~~~~~~~gv---------  265 (566)
T 1qo8_A          197 QQNDIKLVTILAEQSADGVQWLES-LGANLDDLKRSGGARVDRTHRPH-GGKSSGPEIIDTLRKAAKEQGI---------  265 (566)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHH-TTCCCCEEECCTTCSSCCEEECS-SSSCHHHHHHHHHHHHHHHTTC---------
T ss_pred             CCCCHHHHHHHHhccHHHHHHHHh-cCCccccccccCCCCCCceeecC-CCCCCHHHHHHHHHHHHHhcCC---------
Confidence            00   00000        000000 01111000000000000000000 0013356788889999988887         


Q ss_pred             cccccccccceEEeccEEEEEeeeC-CeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhhc
Q 008258          180 GLHNHLLQGREILMGHECVSVSATD-QCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV  243 (572)
Q Consensus       180 ~~~~~~~~~~~i~~g~~v~~v~~~~-~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~l  243 (572)
                                +|+++++++++..++ +.|+ |++.. .+|  +..+++||.||.|+|..|..|+.+
T Consensus       266 ----------~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g--~~~~i~A~~VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          266 ----------DTRLNSRVVKLVVNDDHSVVGAVVHG-KHT--GYYMIGAKSVVLATGGYGMNKEMI  318 (566)
T ss_dssp             ----------CEECSEEEEEEEECTTSBEEEEEEEE-TTT--EEEEEEEEEEEECCCCCTTCHHHH
T ss_pred             ----------EEEeCCEEEEEEECCCCcEEEEEEEe-CCC--cEEEEEcCEEEEecCCcccCHHHH
Confidence                      899999999998877 6554 44442 134  345799999999999999876544

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.20  E-value=3e-11  Score=126.85  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEE---------EEeeeCCeEEEEEEeccCCceee
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV---------SVSATDQCINVIASFLKEGKCTE  221 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~---------~v~~~~~~v~v~~~~~~~g~~~~  221 (572)
                      .++...+...|.+.+.+.|+                   +++++++|+         +++.+++.+.|+.   ++|    
T Consensus       168 ~v~~~~l~~~L~~~~~~~Gv-------------------~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~---~~g----  221 (405)
T 3c4n_A          168 TYRPGSLALLAAQQAIGQGA-------------------GLLLNTRAELVPGGVRLHRLTVTNTHQIVVH---ETR----  221 (405)
T ss_dssp             EECHHHHHHHHHHHHHTTTC-------------------EEECSCEEEEETTEEEEECBCC-------CB---CCE----
T ss_pred             EEcHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEeccccccccceEeeCCeEEEEE---CCc----
Confidence            45566788899999988887                   888889998         8887766664322   122    


Q ss_pred             EEEEecEEEeecCCCh-hhhh-hcCCcc
Q 008258          222 RNIQCNILIGTDGAGS-TVRK-LVGIDL  247 (572)
Q Consensus       222 ~~i~ad~vVgADG~~S-~VR~-~lg~~~  247 (572)
                       +++||.||.|+|++| .+++ .+|+..
T Consensus       222 -~i~a~~VV~A~G~~s~~l~~~~~g~~~  248 (405)
T 3c4n_A          222 -QIRAGVIIVAAGAAGPALVEQGLGLHT  248 (405)
T ss_dssp             -EEEEEEEEECCGGGHHHHHHHHHCCCC
T ss_pred             -EEECCEEEECCCccHHHHHHHhcCCCC
Confidence             689999999999999 6777 777643

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.17  E-value=5.3e-10  Score=117.77  Aligned_cols=34  Identities=35%  Similarity=0.514  Sum_probs=32.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ||+|||||++||++|+.|+++|.+|+|+||.+.+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            8999999999999999999999999999998765

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.17  E-value=6.9e-11  Score=114.20  Aligned_cols=130  Identities=18%  Similarity=0.159  Sum_probs=85.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      ++||+||||||+|+.+|+.|++.|.+|+|||+.....  +  ...++.       ++++                     
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~--G--~~~~~~-------~~~~---------------------   50 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAV--M--MPFLPP-------KPPF---------------------   50 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGT--T--CCSSCC-------CSCC---------------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcC--C--cccCcc-------cccc---------------------
Confidence            5899999999999999999999999999999974211  0  001110       0000                     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                       ..+..+..++     +  . ..|      ++..+...|.+.+++. |+                   +++ ++++++++
T Consensus        51 -~~~~~~~~~~-----d--~-~g~------~~~~~~~~l~~~~~~~~gv-------------------~i~-~~~v~~i~   95 (232)
T 2cul_A           51 -PPGSLLERAY-----D--P-KDE------RVWAFHARAKYLLEGLRPL-------------------HLF-QATATGLL   95 (232)
T ss_dssp             -CTTCHHHHHC-----C--T-TCC------CHHHHHHHHHHHHHTCTTE-------------------EEE-ECCEEEEE
T ss_pred             -chhhHHhhhc-----c--C-CCC------CHHHHHHHHHHHHHcCCCc-------------------EEE-EeEEEEEE
Confidence             0000000000     0  0 011      5678888898988886 65                   666 56899998


Q ss_pred             eeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCc
Q 008258          202 ATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID  246 (572)
Q Consensus       202 ~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~  246 (572)
                      .+++.+. +++   ++|.    +++||+||.|+|.+|..+..+|..
T Consensus        96 ~~~~~v~~v~~---~~g~----~i~a~~VV~A~G~~s~~~~~~G~~  134 (232)
T 2cul_A           96 LEGNRVVGVRT---WEGP----PARGEKVVLAVGSFLGARLFLGGV  134 (232)
T ss_dssp             EETTEEEEEEE---TTSC----CEECSEEEECCTTCSSCEEEETTE
T ss_pred             EeCCEEEEEEE---CCCC----EEECCEEEECCCCChhhceecCCc
Confidence            8777653 333   2453    589999999999999888777654

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.17  E-value=2.7e-10  Score=125.06  Aligned_cols=177  Identities=16%  Similarity=0.186  Sum_probs=93.3

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--CeeeeChhHHHHHHhhcchHHH-------HHhcCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QAHFINNRYALVFRKLDGLAEE-------IERSQP  110 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~--~a~~l~~rt~e~l~~l~Gl~~~-------l~~~~~  110 (572)
                      ...++||||||||++||++|+.|++.|.+|+||||.+.+....  .+..++....+..+.+ |+.+.       ....+.
T Consensus       123 ~~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~-g~~ds~~~~~~~~~~~g~  201 (571)
T 1y0p_A          123 PHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAK-KITDSPELMFEDTMKGGQ  201 (571)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHT-TCCCCHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHh-CCCCCHHHHHHHHHHhcC
Confidence            3456899999999999999999999999999999987653211  0111111111112222 21100       000000


Q ss_pred             ---Ccccccc--------eeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcc
Q 008258          111 ---PVDLWRK--------FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTE  179 (572)
Q Consensus       111 ---~~~~~~~--------~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~  179 (572)
                         ..+....        ..|... .|-.+..........+.....+.. .......+...|.+.+.+.|+         
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~g~~~~r~~~~~~-g~~~g~~l~~~L~~~~~~~gv---------  270 (571)
T 1y0p_A          202 NINDPALVKVLSSHSKDSVDWMTA-MGADLTDVGMMGGASVNRAHRPTG-GAGVGAHVVQVLYDNAVKRNI---------  270 (571)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHH-TTCCCCEEECCTTCSSCCEEESTT-TCCHHHHHHHHHHHHHHHTTC---------
T ss_pred             CCCCHHHHHHHHHccHHHHHHHHh-cCCCCccCcccCCcCCCeeEecCC-CCCCHHHHHHHHHHHHHhcCC---------
Confidence               0000000        000000 011010000000000000000000 012235778889999988887         


Q ss_pred             cccccccccceEEeccEEEEEeeeC-CeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhh
Q 008258          180 GLHNHLLQGREILMGHECVSVSATD-QCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRK  241 (572)
Q Consensus       180 ~~~~~~~~~~~i~~g~~v~~v~~~~-~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~  241 (572)
                                +|+++++|+++..++ +.|+ |++.. .+|  +..+++||.||.|+|..|..++
T Consensus       271 ----------~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g--~~~~i~a~~VVlAtGg~~~n~~  321 (571)
T 1y0p_A          271 ----------DLRMNTRGIEVLKDDKGTVKGILVKG-MYK--GYYWVKADAVILATGGFAKNNE  321 (571)
T ss_dssp             ----------EEESSEEEEEEEECTTSCEEEEEEEE-TTT--EEEEEECSEEEECCCCCTTCHH
T ss_pred             ----------EEEeCCEeeEeEEcCCCeEEEEEEEe-CCC--cEEEEECCeEEEeCCCcccCHH
Confidence                      899999999998876 5544 44442 134  3457999999999999987554

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.15  E-value=2.8e-10  Score=117.66  Aligned_cols=60  Identities=12%  Similarity=0.135  Sum_probs=47.4

Q ss_pred             cChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEe
Q 008258          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (572)
Q Consensus       152 l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVg  231 (572)
                      ++...+.+.|.+.+.+.|+                   +++++++|++++.+++++.++..   +|     +++||.||.
T Consensus       146 ~~~~~l~~~l~~~~~~~G~-------------------~i~~~~~V~~i~~~~~~~~v~~~---~g-----~~~a~~vV~  198 (372)
T 2uzz_A          146 LRSELAIKTWIQLAKEAGC-------------------AQLFNCPVTAIRHDDDGVTIETA---DG-----EYQAKKAIV  198 (372)
T ss_dssp             EEHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEECSSSEEEEES---SC-----EEEEEEEEE
T ss_pred             EcHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEEEEcCCEEEEEEC---CC-----eEEcCEEEE
Confidence            3345777888888888887                   88999999999988777665442   44     489999999


Q ss_pred             ecCCChh
Q 008258          232 TDGAGST  238 (572)
Q Consensus       232 ADG~~S~  238 (572)
                      |+|+.|.
T Consensus       199 a~G~~s~  205 (372)
T 2uzz_A          199 CAGTWVK  205 (372)
T ss_dssp             CCGGGGG
T ss_pred             cCCccHH
Confidence            9999873

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.14  E-value=4.8e-10  Score=114.67  Aligned_cols=35  Identities=34%  Similarity=0.415  Sum_probs=32.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~---~Gi~v~viEr~~~~   78 (572)
                      .||+|||||++||++|+.|++   .|++|+||||.+.+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~   39 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS   39 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCC
Confidence            489999999999999999999   99999999998654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.14  E-value=2.4e-10  Score=116.27  Aligned_cols=126  Identities=21%  Similarity=0.299  Sum_probs=85.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +.++||+||||||+|+++|+.|++.|++|+|||+.+.+.                    |.+...    .|...      
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--------------------g~~~~~----~~~~~------   52 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPG--------------------GQLTAL----YPEKY------   52 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSC--------------------HHHHHT----CTTSE------
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC--------------------Ceeecc----CCCce------
Confidence            446899999999999999999999999999999986542                    111100    11100      


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                              +...             +. ...+....+...|.+.+.+.++                   +++++++|+++
T Consensus        53 --------~~~~-------------~~-~~~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~v~~i   91 (335)
T 2zbw_A           53 --------IYDV-------------AG-FPKVYAKDLVKGLVEQVAPFNP-------------------VYSLGERAETL   91 (335)
T ss_dssp             --------ECCS-------------TT-CSSEEHHHHHHHHHHHHGGGCC-------------------EEEESCCEEEE
T ss_pred             --------eecc-------------CC-CCCCCHHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEE
Confidence                    0000             00 0012345666677777777665                   78889999999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcC
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG  244 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg  244 (572)
                      +.+++.+++++.   +|.    ++++|+||.|+|.+|...+..+
T Consensus        92 ~~~~~~~~v~~~---~g~----~~~~~~lv~AtG~~~~~p~~~~  128 (335)
T 2zbw_A           92 EREGDLFKVTTS---QGN----AYTAKAVIIAAGVGAFEPRRIG  128 (335)
T ss_dssp             EEETTEEEEEET---TSC----EEEEEEEEECCTTSEEEECCCC
T ss_pred             EECCCEEEEEEC---CCC----EEEeCEEEECCCCCCCCCCCCC
Confidence            888776666543   443    5889999999999876655443

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.13  E-value=2.4e-10  Score=117.76  Aligned_cols=125  Identities=16%  Similarity=0.296  Sum_probs=85.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +..+||+||||||+|+++|+.|++.|++|+|||+.+.+.                    |.+...    .|...      
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--------------------g~~~~~----~~~~~------   61 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLG--------------------GQLAAL----YPEKH------   61 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--------------------HHHHHT----CTTSE------
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC--------------------Cccccc----CCCcc------
Confidence            345899999999999999999999999999999986541                    111100    01000      


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                              +...             + ....+.+..+...|.+.+.+.++                   +++++++|+++
T Consensus        62 --------~~~~-------------~-~~~~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~v~~i  100 (360)
T 3ab1_A           62 --------IYDV-------------A-GFPEVPAIDLVESLWAQAERYNP-------------------DVVLNETVTKY  100 (360)
T ss_dssp             --------ECCS-------------T-TCSSEEHHHHHHHHHHHHHTTCC-------------------EEECSCCEEEE
T ss_pred             --------cccC-------------C-CCCCCCHHHHHHHHHHHHHHhCC-------------------EEEcCCEEEEE
Confidence                    0000             0 00113455677778888877665                   78889999999


Q ss_pred             eeeCC-eEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhc
Q 008258          201 SATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV  243 (572)
Q Consensus       201 ~~~~~-~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~l  243 (572)
                      +.+++ .+++++.   +|.    ++++|+||.|+|.+|..++.+
T Consensus       101 ~~~~~~~~~v~~~---~g~----~~~~~~li~AtG~~~~~~~~~  137 (360)
T 3ab1_A          101 TKLDDGTFETRTN---TGN----VYRSRAVLIAAGLGAFEPRKL  137 (360)
T ss_dssp             EECTTSCEEEEET---TSC----EEEEEEEEECCTTCSCCBCCC
T ss_pred             EECCCceEEEEEC---CCc----EEEeeEEEEccCCCcCCCCCC
Confidence            88765 5666543   443    689999999999988666544

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.12  E-value=2.6e-10  Score=116.62  Aligned_cols=130  Identities=16%  Similarity=0.244  Sum_probs=85.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      ++||+||||||+|+++|..|+++|++|+|||+.+.+.    +...+        .++++     ....+...       .
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~g----g~~~~--------~~~~~-----~~~~~~~~-------~   58 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPG----GAWQH--------AWHSL-----HLFSPAGW-------S   58 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSS----GGGGG--------SCTTC-----BCSSCGGG-------S
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC----CcccC--------CCCCc-----EecCchhh-------h
Confidence            4799999999999999999999999999999987542    10000        00000     00000000       0


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                      ...+             +.  .........++..+...|.+.+++.|+                   +++++++|++++.
T Consensus        59 ~~~~-------------~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~~~~~~~v~~i~~  104 (357)
T 4a9w_A           59 SIPG-------------WP--MPASQGPYPARAEVLAYLAQYEQKYAL-------------------PVLRPIRVQRVSH  104 (357)
T ss_dssp             CCSS-------------SC--CCCCSSSSCBHHHHHHHHHHHHHHTTC-------------------CEECSCCEEEEEE
T ss_pred             hCCC-------------CC--CCCCccCCCCHHHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEEE
Confidence            0000             00  001111224567888888888888876                   7899999999999


Q ss_pred             eCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          203 TDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       203 ~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +++.++ +++.   ++     ++++|+||.|+|.+|.
T Consensus       105 ~~~~~~~v~~~---~g-----~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A          105 FGERLRVVARD---GR-----QWLARAVISATGTWGE  133 (357)
T ss_dssp             ETTEEEEEETT---SC-----EEEEEEEEECCCSGGG
T ss_pred             CCCcEEEEEeC---CC-----EEEeCEEEECCCCCCC
Confidence            888866 5432   33     6899999999999874

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.11  E-value=2.5e-09  Score=113.89  Aligned_cols=62  Identities=18%  Similarity=0.250  Sum_probs=47.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCCCCCCCC------------Ce---eeeChhHHHHHHhhcch
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNKAFSTHP------------QA---HFINNRYALVFRKLDGL  101 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~G------i~v~viEr~~~~~~~~------------~a---~~l~~rt~e~l~~l~Gl  101 (572)
                      ..||+|||||++||++|+.|+++|      ++|+|+|+.+.+.-..            .+   ....++.+++++++ |+
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-gl   83 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDL-GL   83 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHHHT-TC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHHHc-CC
Confidence            479999999999999999999999      9999999986542110            11   11246778888888 77


Q ss_pred             HHHH
Q 008258          102 AEEI  105 (572)
Q Consensus       102 ~~~l  105 (572)
                      .+.+
T Consensus        84 ~~~~   87 (470)
T 3i6d_A           84 EHLL   87 (470)
T ss_dssp             CTTE
T ss_pred             ccee
Confidence            6543

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.11  E-value=4.2e-10  Score=122.89  Aligned_cols=152  Identities=15%  Similarity=0.196  Sum_probs=90.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC-CCCCCCe---eeeC-hhHHHHHHhhcchHHHHH-hcCCCcccc
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA-FSTHPQA---HFIN-NRYALVFRKLDGLAEEIE-RSQPPVDLW  115 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~-~~~~~~a---~~l~-~rt~e~l~~l~Gl~~~l~-~~~~~~~~~  115 (572)
                      .++||+|||||++|+++|+.|++.|.+|+|||+.+. ....++.   .++. ....+.++.++|+..... ..+.     
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi-----  101 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGI-----  101 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEE-----
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhccc-----
Confidence            358999999999999999999999999999999852 3222221   1111 122333344423222111 1000     


Q ss_pred             cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHh-cCceeeccCCcccccccccccceEEec
Q 008258          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMG  194 (572)
Q Consensus       116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~g  194 (572)
                       .+.......|...                ......+++..+...|.+.+++ .|+                   ++ ++
T Consensus       102 -~f~~l~~~kgpav----------------~~~r~~~Dr~~~~~~L~e~Le~~~GV-------------------~I-~~  144 (651)
T 3ces_A          102 -QFRILNASKGPAV----------------RATRAQADRVLYRQAVRTALENQPNL-------------------MI-FQ  144 (651)
T ss_dssp             -EEEEESTTSCGGG----------------CEEEEEECHHHHHHHHHHHHHTCTTE-------------------EE-EE
T ss_pred             -chhhhhcccCccc----------------ccchhhCCHHHHHHHHHHHHHhCCCC-------------------EE-EE
Confidence             0111000001000                0011346677888888888877 465                   66 56


Q ss_pred             cEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhh
Q 008258          195 HECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL  242 (572)
Q Consensus       195 ~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~  242 (572)
                      ++|+++..+++.+. |++.   +|.    +++||.||.|+|.+|..+..
T Consensus       145 ~~V~~L~~e~g~V~GV~t~---dG~----~I~Ad~VVLATGt~s~~~~i  186 (651)
T 3ces_A          145 QAVEDLIVENDRVVGAVTQ---MGL----KFRAKAVVLTVGTFLDGKIH  186 (651)
T ss_dssp             CCEEEEEESSSBEEEEEET---TSE----EEEEEEEEECCSTTTCCEEE
T ss_pred             EEEEEEEecCCEEEEEEEC---CCC----EEECCEEEEcCCCCccCccc
Confidence            78999887766653 3332   452    68999999999999866543

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.09  E-value=7.8e-10  Score=120.23  Aligned_cols=39  Identities=33%  Similarity=0.451  Sum_probs=35.3

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      |...++||||||||++||++|+.|++ |.+|+||||.+..
T Consensus         4 m~~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~   42 (540)
T 1chu_A            4 LPEHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVT   42 (540)
T ss_dssp             CCSEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTT
T ss_pred             CCCCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCC
Confidence            44567899999999999999999999 9999999998754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.09  E-value=4.2e-10  Score=119.69  Aligned_cols=68  Identities=10%  Similarity=-0.048  Sum_probs=51.1

Q ss_pred             cChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEe
Q 008258          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (572)
Q Consensus       152 l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVg  231 (572)
                      .++..+.+.|.+.+.+.+.                   .++++++|++++.++++++|++....+|+. .+++++|+||.
T Consensus       112 ~~~~~l~~~l~~~~~~~~~-------------------~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~-~~~~~~d~VVv  171 (447)
T 2gv8_A          112 PHRHTIQEYQRIYAQPLLP-------------------FIKLATDVLDIEKKDGSWVVTYKGTKAGSP-ISKDIFDAVSI  171 (447)
T ss_dssp             CBHHHHHHHHHHHHGGGGG-------------------GEECSEEEEEEEEETTEEEEEEEESSTTCC-EEEEEESEEEE
T ss_pred             CCHHHHHHHHHHHHHHhhC-------------------eEEeCCEEEEEEeCCCeEEEEEeecCCCCe-eEEEEeCEEEE
Confidence            4567788888887766543                   788999999999988888888763222420 34689999999


Q ss_pred             ecCCChhh
Q 008258          232 TDGAGSTV  239 (572)
Q Consensus       232 ADG~~S~V  239 (572)
                      |+|.+|.-
T Consensus       172 AtG~~s~p  179 (447)
T 2gv8_A          172 CNGHYEVP  179 (447)
T ss_dssp             CCCSSSSB
T ss_pred             CCCCCCCC
Confidence            99998753

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.07  E-value=2.8e-09  Score=115.28  Aligned_cols=38  Identities=26%  Similarity=0.432  Sum_probs=35.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||||||||++||++|+.|+++|.+|+||||.+.+
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~   76 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW   76 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            46789999999999999999999999999999998765

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.07  E-value=1e-09  Score=119.50  Aligned_cols=152  Identities=15%  Similarity=0.163  Sum_probs=91.3

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC-CCCCCCCe---eeeC-hhHHHHHHhhcchHHHHHh-cCCCcccc
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFSTHPQA---HFIN-NRYALVFRKLDGLAEEIER-SQPPVDLW  115 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~-~~~~~~~a---~~l~-~rt~e~l~~l~Gl~~~l~~-~~~~~~~~  115 (572)
                      .++||+|||||+||+++|+.|++.|.+|+|||+.+ .....++.   .++. ....+.++.++|....+.. .+.     
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi-----  100 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGI-----  100 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEE-----
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhccc-----
Confidence            45899999999999999999999999999999984 22222221   1111 1223344444333222211 110     


Q ss_pred             cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHh-cCceeeccCCcccccccccccceEEec
Q 008258          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMG  194 (572)
Q Consensus       116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~g  194 (572)
                       .+.......|...                ......+++..+...|.+.+++ .|+                   ++ ++
T Consensus       101 -~f~~l~~~kGpav----------------~~~r~~~Dr~~~~~~L~~~Le~~~GV-------------------eI-~~  143 (637)
T 2zxi_A          101 -QFKMLNTRKGKAV----------------QSPRAQADKKRYREYMKKVCENQENL-------------------YI-KQ  143 (637)
T ss_dssp             -EEEEESTTSCGGG----------------CEEEEEECHHHHHHHHHHHHHTCTTE-------------------EE-EE
T ss_pred             -ceeecccccCccc----------------cchhhhCCHHHHHHHHHHHHHhCCCC-------------------EE-EE
Confidence             0111000011000                0011245677888888888877 355                   66 56


Q ss_pred             cEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhh
Q 008258          195 HECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL  242 (572)
Q Consensus       195 ~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~  242 (572)
                      ++|+++..+++.+. |.+.   +|.    +++||.||.|+|..+..+..
T Consensus       144 ~~Vt~L~~e~g~V~GV~t~---dG~----~i~AdaVVLATG~~s~~~~~  185 (637)
T 2zxi_A          144 EEVVDIIVKNNQVVGVRTN---LGV----EYKTKAVVVTTGTFLNGVIY  185 (637)
T ss_dssp             SCEEEEEESSSBEEEEEET---TSC----EEECSEEEECCTTCBTCEEE
T ss_pred             eEEEEEEecCCEEEEEEEC---CCc----EEEeCEEEEccCCCccCcee
Confidence            78999887777654 3332   453    68999999999998765543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.07  E-value=1.2e-09  Score=119.34  Aligned_cols=151  Identities=17%  Similarity=0.247  Sum_probs=89.3

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC-CCCCCCe---eeeC-hhHHHHHHhhcchHHHH-HhcCCCccc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA-FSTHPQA---HFIN-NRYALVFRKLDGLAEEI-ERSQPPVDL  114 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~-~~~~~~a---~~l~-~rt~e~l~~l~Gl~~~l-~~~~~~~~~  114 (572)
                      ..++||+|||||++|+++|+.|++.|.+|+|||+.+. +...++.   .++. ...++.++.++|+.... ...+.    
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi----   94 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGI----   94 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEE----
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCC----
Confidence            4468999999999999999999999999999999852 2222221   1111 12223333333322221 11110    


Q ss_pred             ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEe
Q 008258          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILM  193 (572)
Q Consensus       115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~  193 (572)
                        .+.......|..               . ......+++..+...|.+.+++. |+                   +++ 
T Consensus        95 --~f~~l~~~kgpa---------------v-~~~r~~~Dr~~l~~~L~~~l~~~~GV-------------------~I~-  136 (641)
T 3cp8_A           95 --QFRMLNRSKGPA---------------M-HSPRAQADKTQYSLYMRRIVEHEPNI-------------------DLL-  136 (641)
T ss_dssp             --EEEEECSSSCTT---------------T-CEEEEEECHHHHHHHHHHHHHTCTTE-------------------EEE-
T ss_pred             --chhhcccccCcc---------------c-cchhhhcCHHHHHHHHHHHHHhCCCC-------------------EEE-
Confidence              011100000100               0 00113467778888888888774 55                   663 


Q ss_pred             ccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhh
Q 008258          194 GHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (572)
Q Consensus       194 g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR  240 (572)
                      +.+|+.+..+++.+. |++.   +|.    +++||.||.|+|.++..+
T Consensus       137 ~~~V~~L~~d~g~V~GV~t~---~G~----~i~Ad~VVLATG~~s~~~  177 (641)
T 3cp8_A          137 QDTVIGVSANSGKFSSVTVR---SGR----AIQAKAAILACGTFLNGL  177 (641)
T ss_dssp             ECCEEEEEEETTEEEEEEET---TSC----EEEEEEEEECCTTCBTCE
T ss_pred             eeEEEEEEecCCEEEEEEEC---CCc----EEEeCEEEECcCCCCCcc
Confidence            558888888777765 4432   453    689999999999987543

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.06  E-value=2e-09  Score=118.41  Aligned_cols=68  Identities=16%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHHhcC-ceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEee
Q 008258          155 YKLNKLLLKQLEKLN-FKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT  232 (572)
Q Consensus       155 ~~L~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgA  232 (572)
                      ..+...|.+.+.+.| +                   +++++++++++..+++.+. +.+....+|  +..+++|+.||.|
T Consensus       134 ~~l~~~L~~~~~~~gnv-------------------~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G--~~~~i~A~~VVlA  192 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQI-------------------QRFDEHFVLDILVDDGHVRGLVAMNMMEG--TLVQIRANAVVMA  192 (602)
T ss_dssp             HHHHHHHHHHHTTCTTE-------------------EEEETEEEEEEEEETTEEEEEEEEETTTT--EEEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhCCCc-------------------EEEeCCEEEEEEEeCCEEEEEEEEEcCCC--cEEEEEcCeEEEC
Confidence            467788888887766 5                   8999999999988776543 223322344  3457999999999


Q ss_pred             cCCChhhhhhc
Q 008258          233 DGAGSTVRKLV  243 (572)
Q Consensus       233 DG~~S~VR~~l  243 (572)
                      +|..|.++...
T Consensus       193 tGg~s~~~~~~  203 (602)
T 1kf6_A          193 TGGAGRVYRYN  203 (602)
T ss_dssp             CCCCGGGSSSB
T ss_pred             CCCCcccccCc
Confidence            99999987654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.06  E-value=2e-09  Score=113.33  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=32.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +||+|||||++||++|+.|+++|.+|+|+|+++.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            48999999999999999999999999999998765

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.05  E-value=5.5e-10  Score=121.36  Aligned_cols=141  Identities=18%  Similarity=0.206  Sum_probs=86.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHH-hCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLT-KLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La-~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      +.++||+|||||++|+++|+.|+ +.|++|+||||.+.+.                    |.+..   ...|..  ....
T Consensus         6 ~~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~G--------------------Gtw~~---~~ypg~--~~d~   60 (540)
T 3gwf_A            6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPG--------------------GTWYW---NRYPGA--LSDT   60 (540)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSC--------------------THHHH---CCCTTC--EEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCC--------------------Ccccc---cCCCCc--eecC
Confidence            44689999999999999999999 9999999999987542                    11110   000000  0000


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                           ... ..... +.. .... ..+......++..+...|.+.+++.|+                 ...++++++|++
T Consensus        61 -----~s~-~~~~~-~~~-~~~~-~~~~~~~~~~~~ei~~~l~~~~~~~g~-----------------~~~i~~~~~V~~  114 (540)
T 3gwf_A           61 -----ESH-LYRFS-FDR-DLLQ-ESTWKTTYITQPEILEYLEDVVDRFDL-----------------RRHFKFGTEVTS  114 (540)
T ss_dssp             -----EGG-GSSCC-SCH-HHHH-HCCCSBSEEEHHHHHHHHHHHHHHTTC-----------------GGGEEESCCEEE
T ss_pred             -----Ccc-eeeec-ccc-cccc-CCCCcccCCCHHHHHHHHHHHHHHcCC-----------------cceeEeccEEEE
Confidence                 000 00000 000 0000 001111234677888888888888764                 126899999999


Q ss_pred             EeeeCC--eEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          200 VSATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       200 v~~~~~--~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      ++.+++  .++|++.   +|+    +++||+||.|+|..|.-
T Consensus       115 i~~~~~~~~~~V~~~---~G~----~i~ad~lV~AtG~~s~p  149 (540)
T 3gwf_A          115 ALYLDDENLWEVTTD---HGE----VYRAKYVVNAVGLLSAI  149 (540)
T ss_dssp             EEEETTTTEEEEEET---TSC----EEEEEEEEECCCSCCSB
T ss_pred             EEEeCCCCEEEEEEc---CCC----EEEeCEEEECCcccccC
Confidence            988776  5666553   553    68999999999987743

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.04  E-value=2e-09  Score=108.41  Aligned_cols=144  Identities=18%  Similarity=0.270  Sum_probs=86.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCC-------CCeeeeChhHHHHHHhhcchHHHHHhcCCCc
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTH-------PQAHFINNRYALVFRKLDGLAEEIERSQPPV  112 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~~~-------~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~  112 (572)
                      .++||+||||||+||++|+.|++.  |.+|+|+|+.+.+...       .....+.+...+.|+++ |+         +.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~-Gv---------~~  133 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQEL-EI---------PY  133 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHT-TC---------CC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhh-Cc---------cc
Confidence            457999999999999999999999  9999999998765311       11122333333444433 21         11


Q ss_pred             ccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceE
Q 008258          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI  191 (572)
Q Consensus       113 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i  191 (572)
                      ..          .|...                    .......+...|++.+.+. |+                   ++
T Consensus       134 ~~----------~g~~~--------------------~~~~~~~~~~~L~~~a~~~~GV-------------------~i  164 (326)
T 2gjc_A          134 ED----------EGDYV--------------------VVKHAALFISTVLSKVLQLPNV-------------------KL  164 (326)
T ss_dssp             EE----------CSSEE--------------------EESCHHHHHHHHHHHHHTSTTE-------------------EE
T ss_pred             cc----------CCCeE--------------------EEcchHHHHHHHHHHHHHhcCc-------------------EE
Confidence            00          01100                    1112346677788887764 54                   88


Q ss_pred             EeccEEEEEeeeC----C--eEE-EEEEec---cCC----ceeeEEEEe---------------cEEEeecCCChhhhhh
Q 008258          192 LMGHECVSVSATD----Q--CIN-VIASFL---KEG----KCTERNIQC---------------NILIGTDGAGSTVRKL  242 (572)
Q Consensus       192 ~~g~~v~~v~~~~----~--~v~-v~~~~~---~~g----~~~~~~i~a---------------d~vVgADG~~S~VR~~  242 (572)
                      +.+++++++..++    +  .|+ |.+...   .+|    .....+++|               ++||.|+|..|++.+.
T Consensus       165 ~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~  244 (326)
T 2gjc_A          165 FNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAF  244 (326)
T ss_dssp             ETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSH
T ss_pred             EecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHH
Confidence            8899999987763    2  232 122110   011    112357999               9999999999988876


Q ss_pred             cC
Q 008258          243 VG  244 (572)
Q Consensus       243 lg  244 (572)
                      +.
T Consensus       245 ~~  246 (326)
T 2gjc_A          245 CA  246 (326)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.04  E-value=1.8e-09  Score=117.65  Aligned_cols=142  Identities=19%  Similarity=0.174  Sum_probs=86.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +.++||+|||||++|+++|+.|++.|++|+||||.+.+.                    |.+.   ....|....     
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~G--------------------G~w~---~~~~pg~~~-----   65 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVG--------------------GVWY---WNRYPGARC-----   65 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--------------------THHH---HCCCTTCBC-----
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCC--------------------Cccc---ccCCCceee-----
Confidence            456899999999999999999999999999999987652                    1111   000110000     


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                       . .... ..... +.+.....  .+......++..+.+.|...+++.+.                 ...++++++|+++
T Consensus        66 -d-~~~~-~~~~~-f~~~~~~~--~~~~~~~~~~~~i~~yl~~~~~~~~l-----------------~~~i~~~~~V~~~  122 (542)
T 1w4x_A           66 -D-IESI-EYCYS-FSEEVLQE--WNWTERYASQPEILRYINFVADKFDL-----------------RSGITFHTTVTAA  122 (542)
T ss_dssp             -S-SCTT-TSSCC-SCHHHHHH--CCCCBSSCBHHHHHHHHHHHHHHTTG-----------------GGGEECSCCEEEE
T ss_pred             -c-cccc-ccccc-cChhhhhc--cCcccccCCHHHHHHHHHHHHHHcCC-----------------CceEEcCcEEEEE
Confidence             0 0000 00000 00000000  00011234577788777777776653                 2378999999999


Q ss_pred             eeeCC--eEEEEEEeccCCceeeEEEEecEEEeecCCChhhh
Q 008258          201 SATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (572)
Q Consensus       201 ~~~~~--~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR  240 (572)
                      +.+++  .++|++.   +|.    +++||+||.|+|..|.-+
T Consensus       123 ~~~~~~~~w~V~~~---~G~----~~~ad~vV~AtG~~s~p~  157 (542)
T 1w4x_A          123 AFDEATNTWTVDTN---HGD----RIRARYLIMASGQLSVPQ  157 (542)
T ss_dssp             EEETTTTEEEEEET---TCC----EEEEEEEEECCCSCCCCC
T ss_pred             EEcCCCCeEEEEEC---CCC----EEEeCEEEECcCCCCCCC
Confidence            87654  5666553   553    689999999999987543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.02  E-value=4.9e-10  Score=113.87  Aligned_cols=124  Identities=19%  Similarity=0.242  Sum_probs=83.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ...+||+||||||+||++|+.|++.|++|+|||+.+.....+.                |.+.             ... 
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~g----------------g~~~-------------~~~-   69 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAG----------------GQLT-------------TTT-   69 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTT----------------CGGG-------------GSS-
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcC----------------cccc-------------cch-
Confidence            4568999999999999999999999999999999763222221                1110             000 


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                             .+.        .+     |.....+....+...|.+.+.+.|+                   ++++++ ++++
T Consensus        70 -------~~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~gv-------------------~i~~~~-v~~i  109 (338)
T 3itj_A           70 -------EIE--------NF-----PGFPDGLTGSELMDRMREQSTKFGT-------------------EIITET-VSKV  109 (338)
T ss_dssp             -------EEC--------CS-----TTCTTCEEHHHHHHHHHHHHHHTTC-------------------EEECSC-EEEE
T ss_pred             -------hhc--------cc-----CCCcccCCHHHHHHHHHHHHHHcCC-------------------EEEEeE-EEEE
Confidence                   000        00     0000123456777788888888876                   788888 8999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +.+++.++++....+++    .++.+|+||.|+|.++.
T Consensus       110 ~~~~~~~~v~~~~~~~~----~~~~~d~vvlAtG~~~~  143 (338)
T 3itj_A          110 DLSSKPFKLWTEFNEDA----EPVTTDAIILATGASAK  143 (338)
T ss_dssp             ECSSSSEEEEETTCSSS----CCEEEEEEEECCCEEEC
T ss_pred             EEcCCEEEEEEEecCCC----cEEEeCEEEECcCCCcC
Confidence            88888877665311223    26889999999998654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.99  E-value=3.5e-08  Score=106.07  Aligned_cols=61  Identities=18%  Similarity=0.271  Sum_probs=46.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC------------Ceeee---ChhHHHHHHhhcchHHH
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP------------QAHFI---NNRYALVFRKLDGLAEE  104 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~------------~a~~l---~~rt~e~l~~l~Gl~~~  104 (572)
                      ++||+|||||++||++|..|++.|++|+|+|+++.+.-+-            .++.+   .++.++.++++ |+.++
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~l-gl~~~  114 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRY-KMHNA  114 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHT-TCTTC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHc-CCcce
Confidence            3799999999999999999999999999999987652111            11222   46777777777 76443

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.98  E-value=8.7e-10  Score=117.11  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~   76 (572)
                      .++||+|||||++|+++|+.|+++| .+|+||||..
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~   57 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH   57 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCC
Confidence            4689999999999999999999999 9999999933

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.97  E-value=3e-09  Score=121.79  Aligned_cols=70  Identities=14%  Similarity=0.232  Sum_probs=52.5

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      .++...+...|.+.+.+.|+                   +++++++|++++.+++++.....  ++|     +++||.||
T Consensus       147 ~v~p~~l~~~L~~~a~~~Gv-------------------~i~~~t~V~~i~~~~~~v~~V~t--~~G-----~i~Ad~VV  200 (830)
T 1pj5_A          147 LASAARAVQLLIKRTESAGV-------------------TYRGSTTVTGIEQSGGRVTGVQT--ADG-----VIPADIVV  200 (830)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEEETTEEEEEEE--TTE-----EEECSEEE
T ss_pred             eEcHHHHHHHHHHHHHHcCC-------------------EEECCceEEEEEEeCCEEEEEEE--CCc-----EEECCEEE
Confidence            34566788899999999887                   88999999999988777542222  233     68999999


Q ss_pred             eecCCChhh-hhhcCCc
Q 008258          231 GTDGAGSTV-RKLVGID  246 (572)
Q Consensus       231 gADG~~S~V-R~~lg~~  246 (572)
                      .|+|+.|.. .+.+|..
T Consensus       201 ~AaG~~s~~l~~~~g~~  217 (830)
T 1pj5_A          201 SCAGFWGAKIGAMIGMA  217 (830)
T ss_dssp             ECCGGGHHHHHHTTTCC
T ss_pred             ECCccchHHHHHHhCCC
Confidence            999999863 3445543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.97  E-value=6.8e-10  Score=112.84  Aligned_cols=121  Identities=21%  Similarity=0.225  Sum_probs=78.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +..+||+||||||+|+++|+.|++.|++|+|||+.........                |..             ..   
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~g----------------g~~-------------~~---   53 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPG----------------GQL-------------TT---   53 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTT----------------CGG-------------GG---
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCC----------------cee-------------ee---
Confidence            4468999999999999999999999999999998211100000                100             00   


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                          . .....        +     |.....+.+..+...|.+.+.+.|+                   ++++++ ++++
T Consensus        54 ----~-~~~~~--------~-----~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~~~~~~-v~~i   95 (333)
T 1vdc_A           54 ----T-TDVEN--------F-----PGFPEGILGVELTDKFRKQSERFGT-------------------TIFTET-VTKV   95 (333)
T ss_dssp             ----C-SEECC--------S-----TTCTTCEEHHHHHHHHHHHHHHTTC-------------------EEECCC-CCEE
T ss_pred             ----c-ccccc--------C-----CCCccCCCHHHHHHHHHHHHHHCCC-------------------EEEEeE-EEEE
Confidence                0 00000        0     0000123455777778888877776                   777776 8888


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      +.+++.+++++    ++.    ++++|+||.|+|.++..
T Consensus        96 ~~~~~~~~v~~----~~~----~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           96 DFSSKPFKLFT----DSK----AILADAVILAIGAVAKR  126 (333)
T ss_dssp             ECSSSSEEEEC----SSE----EEEEEEEEECCCEEECC
T ss_pred             EEcCCEEEEEE----CCc----EEEcCEEEECCCCCcCC
Confidence            87777666654    332    68999999999987643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.96  E-value=3e-09  Score=115.86  Aligned_cols=140  Identities=16%  Similarity=0.222  Sum_probs=85.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +.++||+|||||++|+++|+.|++.|++|+||||.+.+.   .       +.. ....+|+.     ...+...+.    
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~G---G-------tw~-~~~ypg~~-----~dv~s~~y~----   78 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVG---G-------VWY-WNRYPGAR-----CDVESIDYS----   78 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC---T-------HHH-HCCCTTCB-----CSSCTTTSS----
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCC---C-------ccc-cCCCCCce-----eCCCchhcc----
Confidence            456899999999999999999999999999999987542   0       000 00011110     000000000    


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                                 .. +.. .... .........++..+...|.+.+++.|+                 ...++++++|+++
T Consensus        79 -----------~~-f~~-~~~~-~~~~~~~~~~~~ei~~yl~~~~~~~g~-----------------~~~i~~~~~V~~i  127 (549)
T 4ap3_A           79 -----------YS-FSP-ELEQ-EWNWSEKYATQPEILAYLEHVADRFDL-----------------RRDIRFDTRVTSA  127 (549)
T ss_dssp             -----------CC-SCH-HHHH-HCCCSSSSCBHHHHHHHHHHHHHHTTC-----------------GGGEECSCCEEEE
T ss_pred             -----------cc-ccc-cccc-CCCCccCCCCHHHHHHHHHHHHHHcCC-----------------CccEEECCEEEEE
Confidence                       00 000 0000 000011234677888888888888765                 1368899999999


Q ss_pred             eeeCC--eEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          201 SATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       201 ~~~~~--~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +.+++  .++|++.   +|.    +++||+||.|+|..|.
T Consensus       128 ~~~~~~~~w~V~~~---~G~----~i~ad~lV~AtG~~s~  160 (549)
T 4ap3_A          128 VLDEEGLRWTVRTD---RGD----EVSARFLVVAAGPLSN  160 (549)
T ss_dssp             EEETTTTEEEEEET---TCC----EEEEEEEEECCCSEEE
T ss_pred             EEcCCCCEEEEEEC---CCC----EEEeCEEEECcCCCCC
Confidence            88766  5556553   553    6899999999998764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.95  E-value=2.9e-09  Score=107.82  Aligned_cols=118  Identities=20%  Similarity=0.287  Sum_probs=82.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .+||+||||||+|+++|+.|++.|++|+|||+.+.+.                    |.+...    .|...        
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g--------------------G~~~~~----~~~~~--------   54 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLG--------------------GQLSAL----YPEKY--------   54 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC--------------------HHHHHH----CTTSE--------
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC--------------------ceehhc----CCCce--------
Confidence            4799999999999999999999999999999987631                    222110    01000        


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                            +...            ..  ...++...+...|.+.+.+.|+                   +++++++|++++.
T Consensus        55 ------~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~v~~i~~   95 (332)
T 3lzw_A           55 ------IYDV------------AG--FPKIRAQELINNLKEQMAKFDQ-------------------TICLEQAVESVEK   95 (332)
T ss_dssp             ------ECCS------------TT--CSSEEHHHHHHHHHHHHTTSCC-------------------EEECSCCEEEEEE
T ss_pred             ------Eecc------------CC--CCCCCHHHHHHHHHHHHHHhCC-------------------cEEccCEEEEEEE
Confidence                  0000            00  0113456777778888877765                   8899999999988


Q ss_pred             eCC-eEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          203 TDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       203 ~~~-~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      +++ .+.+++.   +|     ++.+|+||.|.|.+|..
T Consensus        96 ~~~~~~~v~~~---~g-----~~~~d~vVlAtG~~~~~  125 (332)
T 3lzw_A           96 QADGVFKLVTN---EE-----THYSKTVIITAGNGAFK  125 (332)
T ss_dssp             CTTSCEEEEES---SE-----EEEEEEEEECCTTSCCE
T ss_pred             CCCCcEEEEEC---CC-----EEEeCEEEECCCCCcCC
Confidence            776 5666553   33     38899999999996643

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.95  E-value=4.6e-09  Score=112.00  Aligned_cols=152  Identities=17%  Similarity=0.248  Sum_probs=84.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCC-----CCEEEEcCCCCCCCCCCeeeeChhHH--HHHHhhcchHHHHHhcCCCccc
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAFSTHPQAHFINNRYA--LVFRKLDGLAEEIERSQPPVDL  114 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~G-----i~v~viEr~~~~~~~~~a~~l~~rt~--e~l~~l~Gl~~~l~~~~~~~~~  114 (572)
                      ..+||+||||||+|+++|+.|++.|     ++|+||||.+.+...+.. .+....+  ..++++       .....|...
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~-~~~~~~~~~~~~~~l-------~~~~~p~~~  100 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNT-LVSQSELQISFLKDL-------VSLRNPTSP  100 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGG-CCSSCBCSSCTTSSS-------STTTCTTCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCC-CCCCCcCCcchhhcc-------ccccCCCCC
Confidence            4579999999999999999999999     999999999865422100 0000000  000000       000000000


Q ss_pred             ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG  194 (572)
Q Consensus       115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g  194 (572)
                      +....|.. ..+...         .+.    .......++..+...|...+.+.+.                   .++++
T Consensus       101 ~~~~~~l~-~~~~~~---------~~~----~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~i~~~  147 (463)
T 3s5w_A          101 YSFVNYLH-KHDRLV---------DFI----NLGTFYPCRMEFNDYLRWVASHFQE-------------------QSRYG  147 (463)
T ss_dssp             TSHHHHHH-HTTCHH---------HHH----HHCCSCCBHHHHHHHHHHHHTTCTT-------------------TEEES
T ss_pred             CChhHhhh-hcCcee---------ecc----cccCCCCCHHHHHHHHHHHHHHcCC-------------------eEEeC
Confidence            00000000 000000         000    0011223567777777777777665                   88999


Q ss_pred             cEEEEEeee---CCe--EEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          195 HECVSVSAT---DQC--INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       195 ~~v~~v~~~---~~~--v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++|++++.+   +..  ++|++.   +|.++++++++|.||.|+|...
T Consensus       148 ~~V~~i~~~~~~~~~~~~~V~~~---~g~g~~~~~~~d~lVlAtG~~p  192 (463)
T 3s5w_A          148 EEVLRIEPMLSAGQVEALRVISR---NADGEELVRTTRALVVSPGGTP  192 (463)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEE---ETTSCEEEEEESEEEECCCCEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEe---cCCCceEEEEeCEEEECCCCCC
Confidence            999999876   333  355554   3333455799999999999744

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.95  E-value=3.9e-09  Score=112.64  Aligned_cols=157  Identities=17%  Similarity=0.182  Sum_probs=88.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHh---CCCC---EEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcc--cc
Q 008258           44 VPVLIVGAGPVGLVLSILLTK---LGIK---CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVD--LW  115 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~---~Gi~---v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~--~~  115 (572)
                      .||+||||||+||++|..|++   .|++   |+||||.+.+.   ........       . |+.    ..+.+..  .+
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~G---G~w~~~~~-------~-g~~----~~g~~~~~~~y   67 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWG---GQWNYTWR-------T-GLD----ENGEPVHSSMY   67 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSC---GGGSCCSC-------C-SBC----TTSSBCCCCCC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCC---CEeecCCC-------C-Ccc----ccCCCCcCccc
Confidence            589999999999999999999   9999   99999986542   00000000       0 100    0000000  00


Q ss_pred             cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (572)
Q Consensus       116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~  195 (572)
                      ... . .+ ..+.......+   .+............++..+.+.|.+.+++.|+                 ...+++++
T Consensus        68 ~~l-~-~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv-----------------~~~i~~~~  124 (464)
T 2xve_A           68 RYL-W-SN-GPKECLEFADY---TFDEHFGKPIASYPPREVLWDYIKGRVEKAGV-----------------RKYIRFNT  124 (464)
T ss_dssp             TTC-B-CS-SCGGGTCBTTB---CHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTC-----------------GGGEECSE
T ss_pred             cch-h-hc-CChhhcccCCC---CCCcccCCCCCCCCCHHHHHHHHHHHHHHcCC-----------------cceEEeCC
Confidence            000 0 00 00000000000   00000000001234667888888888888776                 01388999


Q ss_pred             EEEEEeeeCC--eEEEEEEeccCCceeeEEEEecEEEeecCCChhhh
Q 008258          196 ECVSVSATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (572)
Q Consensus       196 ~v~~v~~~~~--~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR  240 (572)
                      +|++++.+++  .++|++....+|  ...++.+|.||.|+|.+|.-+
T Consensus       125 ~V~~v~~~~~~~~~~V~~~~~~~g--~~~~~~~d~VVvAtG~~s~p~  169 (464)
T 2xve_A          125 AVRHVEFNEDSQTFTVTVQDHTTD--TIYSEEFDYVVCCTGHFSTPY  169 (464)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTTT--EEEEEEESEEEECCCSSSSBC
T ss_pred             EEEEEEEcCCCCcEEEEEEEcCCC--ceEEEEcCEEEECCCCCCCCc
Confidence            9999998766  677777632223  335789999999999876544

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.94  E-value=2.1e-08  Score=111.07  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=34.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||||||||++||++|+.|++.|.+|+||||.+..
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~   40 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK   40 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred             cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            45689999999999999999999999999999998643

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.94  E-value=1.4e-08  Score=111.36  Aligned_cols=67  Identities=10%  Similarity=0.069  Sum_probs=49.6

Q ss_pred             hhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeC-CeEE-EEEEeccCCceeeEEEEecEEEe
Q 008258          154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCIN-VIASFLKEGKCTERNIQCNILIG  231 (572)
Q Consensus       154 q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~-~~v~-v~~~~~~~g~~~~~~i~ad~vVg  231 (572)
                      ...+...|.+.+.+.|+                   +|+++++++++..++ +.|+ |.+.. .+|  +..+++||.||.
T Consensus       254 g~~l~~~L~~~~~~~gv-------------------~i~~~t~v~~l~~~~~g~v~GV~~~~-~~G--~~~~i~A~~VVl  311 (572)
T 1d4d_A          254 GAHVAQVLWDNAVKRGT-------------------DIRLNSRVVRILEDASGKVTGVLVKG-EYT--GYYVIKADAVVI  311 (572)
T ss_dssp             HHHHHHHHHHHHHHTTC-------------------EEESSEEEEEEEEC--CCEEEEEEEE-TTT--EEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHHHcCC-------------------eEEecCEEEEEEECCCCeEEEEEEEe-CCC--cEEEEEcCEEEE
Confidence            45678889999988887                   899999999998766 5443 44442 134  345799999999


Q ss_pred             ecCCChhhhhh
Q 008258          232 TDGAGSTVRKL  242 (572)
Q Consensus       232 ADG~~S~VR~~  242 (572)
                      |+|..|..++.
T Consensus       312 AtGg~~~~~~~  322 (572)
T 1d4d_A          312 AAGGFAKNNER  322 (572)
T ss_dssp             CCCCCTTCHHH
T ss_pred             eCCCCccCHHH
Confidence            99999976543

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.92  E-value=7e-09  Score=113.55  Aligned_cols=73  Identities=19%  Similarity=0.076  Sum_probs=53.0

Q ss_pred             cChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEE
Q 008258          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       152 l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      ++-..+...|.+.+.+.|+                   +++.+++|+++..+++.+. |++.+..+|  +..+++||.||
T Consensus       185 v~~~~l~~~l~~~a~~~Ga-------------------~i~~~t~V~~l~~~~~~v~gV~~~d~~tg--~~~~i~A~~VV  243 (571)
T 2rgh_A          185 NNDARLVIDNIKKAAEDGA-------------------YLVSKMKAVGFLYEGDQIVGVKARDLLTD--EVIEIKAKLVI  243 (571)
T ss_dssp             CCHHHHHHHHHHHHHHTTC-------------------EEESSEEEEEEEEETTEEEEEEEEETTTC--CEEEEEBSCEE
T ss_pred             EchHHHHHHHHHHHHHcCC-------------------eEEeccEEEEEEEeCCEEEEEEEEEcCCC--CEEEEEcCEEE
Confidence            4445677778888888887                   8999999999998877643 555432233  33479999999


Q ss_pred             eecCCChh-hhhhcCC
Q 008258          231 GTDGAGST-VRKLVGI  245 (572)
Q Consensus       231 gADG~~S~-VR~~lg~  245 (572)
                      .|.|+.|. +++..+.
T Consensus       244 ~AaG~ws~~l~~~~g~  259 (571)
T 2rgh_A          244 NTSGPWVDKVRNLNFT  259 (571)
T ss_dssp             ECCGGGHHHHHTTCCS
T ss_pred             ECCChhHHHHHHhhcc
Confidence            99999984 5655553

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.91  E-value=4.9e-09  Score=105.37  Aligned_cols=115  Identities=19%  Similarity=0.315  Sum_probs=79.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      +||+||||||+|+++|+.|++.|+ +|+|||+.. +    .+...+         . .          ..   .      
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~-~----gg~~~~---------~-~----------~~---~------   47 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM-P----GGQITG---------S-S----------EI---E------   47 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS-T----TCGGGG---------C-S----------CB---C------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC-C----Cccccc---------c-c----------cc---c------
Confidence            689999999999999999999999 999999852 1    110000         0 0          00   0      


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                      .+     |.....+++..+.+.|.+.+.+.|+                   ++++ +++++++.
T Consensus        48 ----------------~~-----~~~~~~~~~~~~~~~l~~~~~~~~v-------------------~~~~-~~v~~i~~   86 (311)
T 2q0l_A           48 ----------------NY-----PGVKEVVSGLDFMQPWQEQCFRFGL-------------------KHEM-TAVQRVSK   86 (311)
T ss_dssp             ----------------CS-----TTCCSCBCHHHHHHHHHHHHHTTSC-------------------EEEC-SCEEEEEE
T ss_pred             ----------------cC-----CCCcccCCHHHHHHHHHHHHHHcCC-------------------EEEE-EEEEEEEE
Confidence                            00     0000134566777788888877776                   6766 68888988


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR  240 (572)
                      +++.+++++.   +|.    ++++|+||.|+|.++.+.
T Consensus        87 ~~~~~~v~~~---~g~----~~~~~~vv~AtG~~~~~~  117 (311)
T 2q0l_A           87 KDSHFVILAE---DGK----TFEAKSVIIATGGSPKRT  117 (311)
T ss_dssp             ETTEEEEEET---TSC----EEEEEEEEECCCEEECCC
T ss_pred             cCCEEEEEEc---CCC----EEECCEEEECCCCCCCCC
Confidence            8777666553   443    689999999999877543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.91  E-value=2.8e-08  Score=102.29  Aligned_cols=37  Identities=22%  Similarity=0.528  Sum_probs=34.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +.++||+|||||++|+++|+.|+++|.+|+||||...
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            4568999999999999999999999999999999753

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.90  E-value=1.7e-08  Score=110.86  Aligned_cols=39  Identities=21%  Similarity=0.409  Sum_probs=35.2

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...++||||||||++||++|+.|++.|.+|+||||.+..
T Consensus         4 ~~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~   42 (588)
T 2wdq_A            4 PVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (588)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGG
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            345689999999999999999999999999999998654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.90  E-value=7.4e-09  Score=104.84  Aligned_cols=116  Identities=22%  Similarity=0.298  Sum_probs=77.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +..+||+||||||+|+++|+.|++.|++|+|||+. .+    .+...         .. +          ..   ..   
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~----gg~~~---------~~-~----------~~---~~---   54 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MP----GGQIA---------WS-E----------EV---EN---   54 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CT----TGGGG---------GC-S----------CB---CC---
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CC----Ccccc---------cc-c----------cc---cc---
Confidence            34689999999999999999999999999999997 22    11000         00 0          00   00   


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                         ..+             +     +   ..+++..+...|.+.+.+.|+                   ++++ .+++++
T Consensus        55 ---~~~-------------~-----~---~~~~~~~~~~~l~~~~~~~gv-------------------~~~~-~~v~~i   90 (325)
T 2q7v_A           55 ---FPG-------------F-----P---EPIAGMELAQRMHQQAEKFGA-------------------KVEM-DEVQGV   90 (325)
T ss_dssp             ---STT-------------C-----S---SCBCHHHHHHHHHHHHHHTTC-------------------EEEE-CCEEEE
T ss_pred             ---CCC-------------C-----C---CCCCHHHHHHHHHHHHHHcCC-------------------EEEe-eeEEEE
Confidence               000             0     0   123456777778888888776                   6666 578888


Q ss_pred             eee--CCe-EEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          201 SAT--DQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       201 ~~~--~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +.+  ++. ++++..   +|.    ++++|+||.|+|.++.
T Consensus        91 ~~~~~~~~~~~v~~~---~g~----~~~~~~vv~AtG~~~~  124 (325)
T 2q7v_A           91 QHDATSHPYPFTVRG---YNG----EYRAKAVILATGADPR  124 (325)
T ss_dssp             EECTTSSSCCEEEEE---SSC----EEEEEEEEECCCEEEC
T ss_pred             EeccCCCceEEEEEC---CCC----EEEeCEEEECcCCCcC
Confidence            776  443 556554   453    6899999999998653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.89  E-value=6.4e-09  Score=113.11  Aligned_cols=141  Identities=13%  Similarity=0.254  Sum_probs=84.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +.++||+|||||++|+++|+.|++.|++|+||||.+.+..          +.. ....||+.     ...+...+. +.+
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GG----------tw~-~~~yPg~~-----~d~~~~~y~-~~f   69 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG----------TWY-WNRYPGCR-----LDTESYAYG-YFA   69 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT----------HHH-HCCCTTCB-----CSSCHHHHC-HHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCC----------ccc-cCCCCcee-----ecCchhhcc-ccc
Confidence            3458999999999999999999999999999999876420          000 00011100     000000000 000


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                          .....      .  .+     .......++..+...|.+.+++.|+                 ...++++++|+++
T Consensus        70 ----~~~~~------~--~~-----~~~~~~~~~~ei~~yl~~~~~~~~l-----------------~~~i~~~~~V~~~  115 (545)
T 3uox_A           70 ----LKGII------P--EW-----EWSENFASQPEMLRYVNRAADAMDV-----------------RKHYRFNTRVTAA  115 (545)
T ss_dssp             ----HTTSS------T--TC-----CCSBSSCBHHHHHHHHHHHHHHHTC-----------------GGGEECSCCEEEE
T ss_pred             ----Ccccc------c--CC-----CccccCCCHHHHHHHHHHHHHHcCC-----------------cCcEEECCEEEEE
Confidence                00000      0  00     0011234677788888887877764                 1268899999999


Q ss_pred             eeeCC--eEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          201 SATDQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       201 ~~~~~--~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      +.+++  .++|++.   +|.    +++||+||.|+|..|.-
T Consensus       116 ~~~~~~~~w~V~~~---~G~----~~~ad~lV~AtG~~s~p  149 (545)
T 3uox_A          116 RYVENDRLWEVTLD---NEE----VVTCRFLISATGPLSAS  149 (545)
T ss_dssp             EEEGGGTEEEEEET---TTE----EEEEEEEEECCCSCBC-
T ss_pred             EEeCCCCEEEEEEC---CCC----EEEeCEEEECcCCCCCC
Confidence            87655  5555553   553    68999999999987643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.89  E-value=6.2e-09  Score=104.82  Aligned_cols=112  Identities=16%  Similarity=0.210  Sum_probs=76.7

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      +.+||+||||||+|+++|+.|++.|++|+||||.  +   +                 |.+..     .+.         
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~---g-----------------g~~~~-----~~~---------   57 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--P---G-----------------GQLTE-----AGI---------   57 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--T---T-----------------GGGGG-----CCE---------
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--C---C-----------------Ceecc-----ccc---------
Confidence            3589999999999999999999999999999987  2   1                 11000     000         


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                             ...            . |. ...+....+...|.+.+.+.|+                   ++++ +++++++
T Consensus        58 -------~~~------------~-~~-~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~-~~v~~i~   96 (323)
T 3f8d_A           58 -------VDD------------Y-LG-LIEIQASDMIKVFNKHIEKYEV-------------------PVLL-DIVEKIE   96 (323)
T ss_dssp             -------ECC------------S-TT-STTEEHHHHHHHHHHHHHTTTC-------------------CEEE-SCEEEEE
T ss_pred             -------ccc------------c-CC-CCCCCHHHHHHHHHHHHHHcCC-------------------EEEE-EEEEEEE
Confidence                   000            0 00 0013345677777788877776                   6777 8899998


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      .+++.+.++..   ++.    ++.+|+||.|.|...
T Consensus        97 ~~~~~~~v~~~---~g~----~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           97 NRGDEFVVKTK---RKG----EFKADSVILGIGVKR  125 (323)
T ss_dssp             EC--CEEEEES---SSC----EEEEEEEEECCCCEE
T ss_pred             ecCCEEEEEEC---CCC----EEEcCEEEECcCCCC
Confidence            88777777654   443    689999999999874

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.88  E-value=1.8e-07  Score=98.47  Aligned_cols=35  Identities=31%  Similarity=0.400  Sum_probs=32.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +||+|||||++||++|+.|+++|.+|+|||+++.+
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            69999999999999999999999999999997643

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.87  E-value=1.3e-08  Score=112.80  Aligned_cols=45  Identities=18%  Similarity=0.117  Sum_probs=37.4

Q ss_pred             ccccCCCCccCCEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCC
Q 008258           34 SKTIVSNEAVVPVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAF   78 (572)
Q Consensus        34 ~~~~~~~~~~~dVlIVGaGpaGL~~A~~La~~------Gi~v~viEr~~~~   78 (572)
                      +..+.+...++||||||||+|||++|+.|++.      |.+|+||||.+..
T Consensus        13 ~~~~~~~~~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~   63 (662)
T 3gyx_A           13 IAEPIIVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLE   63 (662)
T ss_dssp             CCSCCCEEEECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTT
T ss_pred             cccCccceEEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCC
Confidence            33333445679999999999999999999998      9999999998653

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.87  E-value=4.2e-08  Score=107.96  Aligned_cols=64  Identities=13%  Similarity=0.100  Sum_probs=47.7

Q ss_pred             hhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeec
Q 008258          155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTD  233 (572)
Q Consensus       155 ~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgAD  233 (572)
                      ..+...|.+.+.+.|+                   +|+++++++++..+++.+. |.+....+|  +...++|+.||.|+
T Consensus       155 ~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G--~~~~i~A~~VVlAT  213 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDT-------------------SYFVEYFALDLLMENGECRGVIALCIEDG--TIHRFRAKNTVIAT  213 (621)
T ss_dssp             HHHHHHHHHHHTTSCC-------------------EEEETEEEEEEEEETTEEEEEEEEETTTC--CEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHhCCC-------------------EEEEceEEEEEEEECCEEEEEEEEEcCCC--cEEEEEcCeEEECC
Confidence            3677788888877776                   8999999999987766544 333322344  34579999999999


Q ss_pred             CCChhh
Q 008258          234 GAGSTV  239 (572)
Q Consensus       234 G~~S~V  239 (572)
                      |..|.+
T Consensus       214 GG~~~~  219 (621)
T 2h88_A          214 GGYGRT  219 (621)
T ss_dssp             CCCGGG
T ss_pred             Cccccc
Confidence            999865

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.86  E-value=1.5e-08  Score=100.85  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=76.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      +||+||||||+|+++|..|++.|++|+|||+.+...                    ..         +.  +.       
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~--------------------~~---------~~--~~-------   44 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRN--------------------RF---------AS--HS-------   44 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGG--------------------GG---------CS--CC-------
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccc--------------------cc---------ch--hh-------
Confidence            799999999999999999999999999999865210                    00         00  00       


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                       .             .+     +. ....+...+...+.+.+.+.+.                  ++++ ..++++++.+
T Consensus        45 -~-------------~~-----~~-~~~~~~~~~~~~~~~~~~~~~~------------------v~~~-~~~v~~i~~~   85 (297)
T 3fbs_A           45 -H-------------GF-----LG-QDGKAPGEIIAEARRQIERYPT------------------IHWV-EGRVTDAKGS   85 (297)
T ss_dssp             -C-------------SS-----TT-CTTCCHHHHHHHHHHHHTTCTT------------------EEEE-ESCEEEEEEE
T ss_pred             -c-------------CC-----cC-CCCCCHHHHHHHHHHHHHhcCC------------------eEEE-EeEEEEEEEc
Confidence             0             00     00 0123345666677777766521                  2444 4589999988


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      ++++++++.   +++    ++++|+||.|+|.++..
T Consensus        86 ~~~~~v~~~---~g~----~~~~d~vviAtG~~~~~  114 (297)
T 3fbs_A           86 FGEFIVEID---GGR----RETAGRLILAMGVTDEL  114 (297)
T ss_dssp             TTEEEEEET---TSC----EEEEEEEEECCCCEEEC
T ss_pred             CCeEEEEEC---CCC----EEEcCEEEECCCCCCCC
Confidence            888777664   453    68999999999997644

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.86  E-value=7.6e-09  Score=104.45  Aligned_cols=114  Identities=19%  Similarity=0.236  Sum_probs=76.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +.++||+||||||+|+++|+.|++.|++|+||||.. +   + +.            + ..       ....   .    
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~---g-g~------------~-~~-------~~~~---~----   61 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-A---G-GL------------T-AE-------APLV---E----   61 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-T---T-GG------------G-GG-------CSCB---C----
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-C---C-cc------------c-cc-------cchh---h----
Confidence            346899999999999999999999999999999842 1   1 10            0 00       0000   0    


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                                        .+    ...  ..+....+...|.+.+.+.|+                   ++++ .+++++
T Consensus        62 ------------------~~----~~~--~~~~~~~~~~~~~~~~~~~~v-------------------~~~~-~~v~~i   97 (319)
T 3cty_A           62 ------------------NY----LGF--KSIVGSELAKLFADHAANYAK-------------------IREG-VEVRSI   97 (319)
T ss_dssp             ------------------CB----TTB--SSBCHHHHHHHHHHHHHTTSE-------------------EEET-CCEEEE
T ss_pred             ------------------hc----CCC--cccCHHHHHHHHHHHHHHcCC-------------------EEEE-eeEEEE
Confidence                              00    000  123345666677777777776                   6666 688888


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +.+++.++++.    ++.    ++.+|+||.|+|.++.
T Consensus        98 ~~~~~~~~v~~----~~~----~~~~~~li~AtG~~~~  127 (319)
T 3cty_A           98 KKTQGGFDIET----NDD----TYHAKYVIITTGTTHK  127 (319)
T ss_dssp             EEETTEEEEEE----SSS----EEEEEEEEECCCEEEC
T ss_pred             EEeCCEEEEEE----CCC----EEEeCEEEECCCCCcc
Confidence            88777766543    232    5889999999998654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.85  E-value=2.7e-07  Score=99.80  Aligned_cols=37  Identities=30%  Similarity=0.475  Sum_probs=34.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+||+|||||++||++|..|++.|++|+|+|+++.+
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3579999999999999999999999999999998765

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.84  E-value=2.4e-08  Score=106.81  Aligned_cols=31  Identities=29%  Similarity=0.572  Sum_probs=30.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ||+|||||++||++|+.|++.|.+|+||||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            7999999999999999999999999999998

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.83  E-value=2.8e-09  Score=108.60  Aligned_cols=115  Identities=18%  Similarity=0.313  Sum_probs=75.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +..+||+||||||+|+++|+.|++.|++|+|||+.. +    .                |.+   . ....         
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~----g----------------g~~---~-~~~~---------   57 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-F----G----------------GAL---M-TTTD---------   57 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-C----S----------------CGG---G-SCSC---------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-C----C----------------Cce---e-ccch---------
Confidence            445899999999999999999999999999999641 1    1                100   0 0000         


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                              .   .     .+     |.....+....+...|.+.+.+.|+                   ++++++ ++++
T Consensus        58 --------~---~-----~~-----~~~~~~~~~~~~~~~l~~~~~~~~v-------------------~~~~~~-v~~i   96 (335)
T 2a87_A           58 --------V---E-----NY-----PGFRNGITGPELMDEMREQALRFGA-------------------DLRMED-VESV   96 (335)
T ss_dssp             --------B---C-----CS-----TTCTTCBCHHHHHHHHHHHHHHTTC-------------------EEECCC-EEEE
T ss_pred             --------h---h-----hc-----CCCCCCCCHHHHHHHHHHHHHHcCC-------------------EEEEee-EEEE
Confidence                    0   0     00     0000123455666777777777776                   777776 7788


Q ss_pred             eeeCCeEEE-EEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          201 SATDQCINV-IASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       201 ~~~~~~v~v-~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +. ++.+++ ++.   ++.    ++++|+||.|+|.++.
T Consensus        97 ~~-~~~~~v~~~~---~g~----~~~~d~lviAtG~~~~  127 (335)
T 2a87_A           97 SL-HGPLKSVVTA---DGQ----THRARAVILAMGAAAR  127 (335)
T ss_dssp             EC-SSSSEEEEET---TSC----EEEEEEEEECCCEEEC
T ss_pred             Ee-CCcEEEEEeC---CCC----EEEeCEEEECCCCCcc
Confidence            76 455555 432   443    6899999999998764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.82  E-value=3.6e-09  Score=106.74  Aligned_cols=114  Identities=18%  Similarity=0.312  Sum_probs=76.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      ..+||+||||||+|+++|+.|++.|++|+|||+. .+    .+.            + -.       ....         
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~----gg~------------~-~~-------~~~~---------   49 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EK----GGQ------------L-TT-------TTEV---------   49 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-ST----TGG------------G-GG-------CSBC---------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CC----Cce------------E-ec-------chhh---------
Confidence            4589999999999999999999999999999964 11    110            0 00       0000         


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                         .     .        +     |.....+....+...+.+.+.+.|+                   ++++++ ++.++
T Consensus        50 ---~-----~--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~-v~~i~   88 (320)
T 1trb_A           50 ---E-----N--------W-----PGDPNDLTGPLLMERMHEHATKFET-------------------EIIFDH-INKVD   88 (320)
T ss_dssp             ---C-----C--------S-----TTCCSSCBHHHHHHHHHHHHHHTTC-------------------EEECCC-EEEEE
T ss_pred             ---h-----h--------C-----CCCCCCCCHHHHHHHHHHHHHHCCC-------------------EEEEee-eeEEE
Confidence               0     0        0     0000123445666677777777776                   777776 88888


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      .+++.+++ +.   ++.    ++.+|+||.|+|.++.
T Consensus        89 ~~~~~~~v-~~---~~~----~~~~~~lv~AtG~~~~  117 (320)
T 1trb_A           89 LQNRPFRL-NG---DNG----EYTCDALIIATGASAR  117 (320)
T ss_dssp             CSSSSEEE-EE---SSC----EEEEEEEEECCCEEEC
T ss_pred             ecCCEEEE-Ee---CCC----EEEcCEEEECCCCCcC
Confidence            77777766 43   443    6889999999998754

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.82  E-value=5.1e-08  Score=104.16  Aligned_cols=62  Identities=18%  Similarity=0.275  Sum_probs=47.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCC-------C-----Ce---eeeChhHHHHHHhhcchHHHH
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTH-------P-----QA---HFINNRYALVFRKLDGLAEEI  105 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~~~~-------~-----~a---~~l~~rt~e~l~~l~Gl~~~l  105 (572)
                      .+||+|||||++||++|+.|++.|  ++|+|+|+.+.+.-.       +     .+   ....+...++++++ |+.+++
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~l-g~~~~~   82 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAI-GLGEKL   82 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHT-TCGGGE
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHc-CCcceE
Confidence            479999999999999999999999  999999997654211       0     11   11246778888888 876544

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.80  E-value=2.1e-08  Score=103.30  Aligned_cols=140  Identities=16%  Similarity=0.242  Sum_probs=80.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      ++||+||||||+|+++|..|++.|+ +|+|||+.+ +.    +         .+...+.          ....... .+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~G----g---------~~~~~~~----------~~~~~~~-~~~   58 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VG----H---------SFKHWPK----------STRTITP-SFT   58 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TT----H---------HHHTSCT----------TCBCSSC-CCC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CC----C---------ccccCcc----------cccccCc-chh
Confidence            5799999999999999999999999 999999986 21    1         0000000          0000000 000


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                      ...-|-.  ............ . ......+.+..+...|.+.+++.|+                   +++++++|++++
T Consensus        59 ~~~~g~~--~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~i~~~~~v~~i~  115 (369)
T 3d1c_A           59 SNGFGMP--DMNAISMDTSPA-F-TFNEEHISGETYAEYLQVVANHYEL-------------------NIFENTVVTNIS  115 (369)
T ss_dssp             CGGGTCC--CTTCSSTTCCHH-H-HHCCSSCBHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEE
T ss_pred             cccCCch--hhhhcccccccc-c-cccccCCCHHHHHHHHHHHHHHcCC-------------------eEEeCCEEEEEE
Confidence            0000000  000000000000 0 0001123445666777777777776                   888999999998


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      .++++++|+..   ++     ++.+|.||.|.|..+.
T Consensus       116 ~~~~~~~v~~~---~g-----~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A          116 ADDAYYTIATT---TE-----TYHADYIFVATGDYNF  144 (369)
T ss_dssp             ECSSSEEEEES---SC-----CEEEEEEEECCCSTTS
T ss_pred             ECCCeEEEEeC---CC-----EEEeCEEEECCCCCCc
Confidence            87777766543   34     4789999999998763

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.77  E-value=1.2e-08  Score=114.95  Aligned_cols=37  Identities=41%  Similarity=0.658  Sum_probs=34.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...||+|||||++||++|..|++.|++|+|+|+.+.+
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~  371 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI  371 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence            3579999999999999999999999999999997654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.76  E-value=1.9e-08  Score=100.95  Aligned_cols=112  Identities=19%  Similarity=0.324  Sum_probs=74.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      +||+||||||+|+++|+.|++.|++|+|||+...                      |.+..    .  . .         
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~g----------------------G~~~~----~--~-~---------   43 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFG----------------------GQILD----T--V-D---------   43 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTT----------------------GGGGG----C--C-E---------
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC----------------------ceecc----c--c-c---------
Confidence            7999999999999999999999999999986311                      11000    0  0 0         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                           +   .     .+.    .  ....++..+...|.+.+.+.|+                   +++++++++.++.+
T Consensus        44 -----~---~-----~~~----~--~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~~~~v~~i~~~   85 (310)
T 1fl2_A           44 -----I---E-----NYI----S--VPKTEGQKLAGALKVHVDEYDV-------------------DVIDSQSASKLIPA   85 (310)
T ss_dssp             -----E---C-----CBT----T--BSSEEHHHHHHHHHHHHHTSCE-------------------EEECSCCEEEEECC
T ss_pred             -----c---c-----ccc----C--cCCCCHHHHHHHHHHHHHHcCC-------------------eEEccCEEEEEEec
Confidence                 0   0     000    0  0012344666677777777766                   88889999998764


Q ss_pred             C---CeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          204 D---QCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       204 ~---~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      .   +.+++++.   +|.    ++++|+||.|+|.++.
T Consensus        86 ~~~~~~~~v~~~---~g~----~~~~~~lv~AtG~~~~  116 (310)
T 1fl2_A           86 AVEGGLHQIETA---SGA----VLKARSIIVATGAKWR  116 (310)
T ss_dssp             SSTTCCEEEEET---TSC----EEEEEEEEECCCEEEC
T ss_pred             ccCCceEEEEEC---CCC----EEEeCEEEECcCCCcC
Confidence            3   25566553   443    6889999999998753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.75  E-value=5.6e-08  Score=104.30  Aligned_cols=46  Identities=15%  Similarity=0.221  Sum_probs=32.9

Q ss_pred             CCCcccccCCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           30 ALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        30 ~~~~~~~~~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ..++.+...|++.++||+||||||+|+++|+.|+++|.+|+||||.
T Consensus        13 ~~~~~~~~~M~~~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           13 EAQTQGPGSMGSFDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             -----------CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cccCcCCCCCCcCCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            3344443344445789999999999999999999999999999994

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.74  E-value=2e-07  Score=103.33  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=34.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHH---h-CCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLT---K-LGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La---~-~Gi~v~viEr~~~~   78 (572)
                      ..++||||||||++||++|+.|+   + .|.+|+||||.+..
T Consensus        20 ~~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           20 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             eccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            35689999999999999999999   6 89999999998743

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.72  E-value=2.9e-08  Score=106.47  Aligned_cols=38  Identities=26%  Similarity=0.538  Sum_probs=34.3

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||+||||||+|+++|+.|++.|.+|+||||.+.+
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~   41 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            34689999999999999999999999999999997553

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.72  E-value=7.6e-08  Score=96.54  Aligned_cols=36  Identities=25%  Similarity=0.512  Sum_probs=32.3

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      |.++||+||||||||+++|+.|+|+|.+|+|||+..
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            567999999999999999999999999999999863

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.71  E-value=3.7e-08  Score=105.05  Aligned_cols=33  Identities=33%  Similarity=0.623  Sum_probs=31.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ++||+||||||+|+++|+.|++.|++|+||||.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            479999999999999999999999999999997

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.64  E-value=4.5e-08  Score=104.85  Aligned_cols=37  Identities=32%  Similarity=0.583  Sum_probs=33.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||+||||||+|+++|+.|++.|++|+||||.+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   40 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence            4589999999999999999999999999999996543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.64  E-value=8e-08  Score=104.00  Aligned_cols=115  Identities=16%  Similarity=0.314  Sum_probs=77.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      +..+||+||||||+|+++|+.|++.|++|+|+|++..      +...        ... ++              .    
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~G------G~~~--------~~~-~~--------------~----  256 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFG------GQVL--------DTV-DI--------------E----  256 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTT------GGGT--------TCS-CB--------------C----
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCC------Cccc--------ccc-cc--------------c----
Confidence            3468999999999999999999999999999986311      0000        000 00              0    


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                                        .+.  ..+    ......+...|.+.+.+.|+                   +++++++++.+
T Consensus       257 ------------------~~~--~~~----~~~~~~l~~~l~~~~~~~gv-------------------~v~~~~~v~~i  293 (521)
T 1hyu_A          257 ------------------NYI--SVP----KTEGQKLAGALKAHVSDYDV-------------------DVIDSQSASKL  293 (521)
T ss_dssp             ------------------CBT--TBS----SBCHHHHHHHHHHHHHTSCE-------------------EEECSCCEEEE
T ss_pred             ------------------ccC--CCC----CCCHHHHHHHHHHHHHHcCC-------------------EEEcCCEEEEE
Confidence                              000  000    12345677778888877776                   88889999998


Q ss_pred             eee---CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          201 SAT---DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       201 ~~~---~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +.+   ++.+++++.   +|.    ++++|+||.|+|+++.
T Consensus       294 ~~~~~~~~~~~V~~~---~g~----~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          294 VPAATEGGLHQIETA---SGA----VLKARSIIIATGAKWR  327 (521)
T ss_dssp             ECCSSTTSCEEEEET---TSC----EEEEEEEEECCCEEEC
T ss_pred             EeccCCCceEEEEEC---CCC----EEEcCEEEECCCCCcC
Confidence            754   235666553   453    6899999999998653

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.61  E-value=5.5e-08  Score=104.65  Aligned_cols=34  Identities=38%  Similarity=0.554  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         3 ~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~   36 (501)
T 4dgk_A            3 PTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP   36 (501)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence            7999999999999999999999999999999765

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.59  E-value=1.1e-07  Score=101.63  Aligned_cols=63  Identities=21%  Similarity=0.250  Sum_probs=47.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCC------------eeee---ChhHHHHHHhhcchHHHH
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQ------------AHFI---NNRYALVFRKLDGLAEEI  105 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~------------a~~l---~~rt~e~l~~l~Gl~~~l  105 (572)
                      ..+||+|||||++||++|..|+++|++|+|+|+.+.+.-+-+            ++.+   .+...++++++ |+.+.+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~-gl~~~~   92 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAAL-NLEGRI   92 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHT-TCGGGE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHc-CCccee
Confidence            357999999999999999999999999999999876532111            1111   46778899998 876543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.57  E-value=5.2e-07  Score=96.89  Aligned_cols=38  Identities=32%  Similarity=0.640  Sum_probs=32.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ++++||+||||||+|+++|+.|++.|.+|+||||.+.+
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   60 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTY   60 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            34589999999999999999999999999999987543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.57  E-value=4.2e-07  Score=97.79  Aligned_cols=64  Identities=11%  Similarity=0.101  Sum_probs=48.9

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCC--------eEEEEEEeccCCceeeE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQ--------CINVIASFLKEGKCTER  222 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~--------~v~v~~~~~~~g~~~~~  222 (572)
                      ..+|.++...|...+++.+.                   .|+|+++|++++..+.        .++|+..+.++|  ++.
T Consensus       141 ~p~r~E~~~Yl~~~A~~~~~-------------------~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g--~~~  199 (501)
T 4b63_A          141 LPARLEFEDYMRWCAQQFSD-------------------VVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETG--EIS  199 (501)
T ss_dssp             CCBHHHHHHHHHHHHHTTGG-------------------GEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTC--CEE
T ss_pred             CCCHHHHHHHHHHHHHHcCC-------------------ceEcceEEEeeccccccccccccceEEEEEecCCCc--eEE
Confidence            45688888888888877543                   7999999999986542        477877743333  566


Q ss_pred             EEEecEEEeecCC
Q 008258          223 NIQCNILIGTDGA  235 (572)
Q Consensus       223 ~i~ad~vVgADG~  235 (572)
                      +++|+.||-|-|.
T Consensus       200 ~~~ar~vVlatG~  212 (501)
T 4b63_A          200 ARRTRKVVIAIGG  212 (501)
T ss_dssp             EEEEEEEEECCCC
T ss_pred             EEEeCEEEECcCC
Confidence            8999999999994

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.54  E-value=1.4e-07  Score=100.86  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=32.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~   78 (572)
                      .||+|||||++||++|+.|+++|.  +|+|+|+.+.+
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            589999999999999999999999  99999997654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.54  E-value=1.1e-07  Score=101.59  Aligned_cols=38  Identities=37%  Similarity=0.589  Sum_probs=34.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||+||||||+|+++|+.|++.|++|+||||.+.+
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            34589999999999999999999999999999998654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.50  E-value=8.4e-08  Score=96.32  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=32.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .+||+||||||||+++|+.|+++|++|+|||+..
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            4899999999999999999999999999999865

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.47  E-value=7.1e-07  Score=89.32  Aligned_cols=111  Identities=19%  Similarity=0.281  Sum_probs=73.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEE-EcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSV-LEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~v-iEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      .+||+||||||+||++|..|++.|++|+| +|| +.+    .                |.+..    ....         
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~----g----------------G~~~~----~~~~---------   49 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMP----G----------------GQITS----SSEI---------   49 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SST----T----------------GGGGG----CSCB---------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCC----C----------------ceeee----ecee---------
Confidence            47999999999999999999999999999 999 332    1                11000    0000         


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                              .        .+     |.....+....+...+.+.+.+.|+                   +++++ +++++ 
T Consensus        50 --------~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~~-~v~~i-   87 (315)
T 3r9u_A           50 --------E--------NY-----PGVAQVMDGISFMAPWSEQCMRFGL-------------------KHEMV-GVEQI-   87 (315)
T ss_dssp             --------C--------CS-----TTCCSCBCHHHHHHHHHHHHTTTCC-------------------EEECC-CEEEE-
T ss_pred             --------c--------cC-----CCCCCCCCHHHHHHHHHHHHHHcCc-------------------EEEEE-EEEEE-
Confidence                    0        00     0001123456677777787877776                   67777 88888 


Q ss_pred             eeC--CeEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258          202 ATD--QCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (572)
Q Consensus       202 ~~~--~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~  236 (572)
                      .++  +.+++++.   ++.    ++.+|+||-|.|..
T Consensus        88 ~~~~~~~~~v~~~---~~~----~~~~d~lvlAtG~~  117 (315)
T 3r9u_A           88 LKNSDGSFTIKLE---GGK----TELAKAVIVCTGSA  117 (315)
T ss_dssp             EECTTSCEEEEET---TSC----EEEEEEEEECCCEE
T ss_pred             ecCCCCcEEEEEe---cCC----EEEeCEEEEeeCCC
Confidence            665  66665343   221    68999999999974

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.43  E-value=2.1e-08  Score=102.74  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G------i~v~viEr~~   76 (572)
                      +||+|||||++||++|+.|+++|      .+|+||||..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            38999999999999999999998      9999999986

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.38  E-value=5e-06  Score=88.87  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=33.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +.++||+||||||+|+++|+.|++.|.+|+||||..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            456899999999999999999999999999999764

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.36  E-value=6.5e-07  Score=94.47  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=32.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      .+||+||||||+|+++|..|++.|.  +|+|||+.+.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   40 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence            4799999999999999999999998  7999998764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.35  E-value=2.4e-07  Score=93.03  Aligned_cols=37  Identities=24%  Similarity=0.549  Sum_probs=33.1

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      |++.+|||+||||||||+++|+.|++.|++|+||||.
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~   38 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG   38 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence            3456799999999999999999999999999999985

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.33  E-value=8.2e-07  Score=92.90  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=31.3

Q ss_pred             CEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~---~Gi~v~viEr~~~   77 (572)
                      +|+|||||++|+++|..|++   .|.+|+|||+.+.
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            79999999999999999999   8999999999873

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.32  E-value=4.8e-07  Score=91.65  Aligned_cols=37  Identities=38%  Similarity=0.552  Sum_probs=33.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTK--LGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~--~Gi~v~viEr~~~~   78 (572)
                      .++||+||||||+||++|+.|++  .|++|+||||.+.+
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            46799999999999999999975  59999999998765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.31  E-value=1.9e-06  Score=94.72  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      ..||+||||||+|+++|..|++.  |.+|+||||.+.+
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            46899999999999999999998  8999999998765

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.29  E-value=2.9e-06  Score=90.98  Aligned_cols=36  Identities=17%  Similarity=0.175  Sum_probs=33.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~G---i~v~viEr~~~~   78 (572)
                      ++||+||||||+|+++|..|++.|   .+|+|||+.+..
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence            579999999999999999999998   999999998754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.28  E-value=2.5e-06  Score=90.63  Aligned_cols=33  Identities=42%  Similarity=0.668  Sum_probs=31.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ++||+||||||+|+++|..|++.|.+|+|||+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            479999999999999999999999999999997

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.28  E-value=2.5e-06  Score=90.94  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=33.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||+||||||+|+++|..|++.|++|+||||.+.+
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~   39 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGEL   39 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence            3689999999999999999999999999999987653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.27  E-value=1.8e-06  Score=91.53  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      +||+||||||+|+++|..|++.  |.+|+|||+.+..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            4899999999999999999998  9999999998754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.27  E-value=5.1e-06  Score=88.13  Aligned_cols=36  Identities=22%  Similarity=0.383  Sum_probs=33.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS   79 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~   79 (572)
                      .||+||||||+|+++|..|++.  |.+|+|||+.+.+.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            5899999999999999999998  99999999988653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.26  E-value=4.2e-07  Score=97.86  Aligned_cols=39  Identities=31%  Similarity=0.534  Sum_probs=35.0

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~   78 (572)
                      +..++||+|||||++||++|..|+++ |++|+|+|+++.+
T Consensus         7 p~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~   46 (513)
T 4gde_A            7 PDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP   46 (513)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence            34568999999999999999999985 9999999999765

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.25  E-value=4.2e-06  Score=89.33  Aligned_cols=37  Identities=35%  Similarity=0.593  Sum_probs=33.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||+||||||+|+++|..|++.|.+|+|||+.+.+
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL   41 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4589999999999999999999999999999998653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.23  E-value=3.4e-06  Score=87.47  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ++++|+||||||||+++|..|++.+.+|+|||+.+.+
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~   44 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYL   44 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            4579999999999999999998889999999998764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.22  E-value=2.9e-06  Score=90.53  Aligned_cols=35  Identities=14%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      .||+||||||+|+++|..|++.  |.+|+||||.+.+
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            5899999999999999999999  9999999998765

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.21  E-value=1.5e-05  Score=85.15  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=32.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      +.++||+||||||+|+++|+.|++.|.+|+||||.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            34689999999999999999999999999999963

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.21  E-value=2.4e-06  Score=91.39  Aligned_cols=35  Identities=17%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      .||+||||||+|+++|..|++.  |.+|+|||+.+..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5999999999999999999997  9999999998754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.20  E-value=4e-06  Score=87.85  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=33.6

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIK--CSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~--v~viEr~~~~   78 (572)
                      .++||+|||||++|+++|..|++.|.+  |+|||+.+.+
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEI   46 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCC
Confidence            457999999999999999999999987  9999998754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.20  E-value=7.1e-06  Score=87.04  Aligned_cols=100  Identities=18%  Similarity=0.298  Sum_probs=76.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+.+|..|++.|.+|+|+|+.+.+.+                   +.                     
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------------------~~---------------------  206 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP-------------------TM---------------------  206 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc-------------------cc---------------------
Confidence            35799999999999999999999999999998765421                   00                     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                     ...+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       207 -------------------------------~~~~~~~l~~~l~~~Gv-------------------~i~~~~~V~~i~~  236 (455)
T 2yqu_A          207 -------------------------------DLEVSRAAERVFKKQGL-------------------TIRTGVRVTAVVP  236 (455)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEE
Confidence                                           01223345566666776                   8999999999998


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      +++++.+++.   +|+    ++.+|.||.|.|.++..
T Consensus       237 ~~~~v~v~~~---~g~----~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          237 EAKGARVELE---GGE----VLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             ETTEEEEEET---TSC----EEEESEEEECSCEEECC
T ss_pred             eCCEEEEEEC---CCe----EEEcCEEEECcCCCcCC
Confidence            8877766553   443    68999999999987654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.19  E-value=6.9e-06  Score=85.09  Aligned_cols=101  Identities=21%  Similarity=0.297  Sum_probs=77.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                .                        
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------~------------------------  184 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG----------------L------------------------  184 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT----------------T------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc----------------c------------------------
Confidence            357999999999999999999999999999987653210                0                        


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                    ....+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       185 ------------------------------~~~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  215 (384)
T 2v3a_A          185 ------------------------------LHPAAAKAVQAGLEGLGV-------------------RFHLGPVLASLKK  215 (384)
T ss_dssp             ------------------------------SCHHHHHHHHHHHHTTTC-------------------EEEESCCEEEEEE
T ss_pred             ------------------------------cCHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEe
Confidence                                          001334456667777776                   8999999999998


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      +++++.+++.   +|+    ++++|.||.|.|.++..
T Consensus       216 ~~~~~~v~~~---~g~----~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          216 AGEGLEAHLS---DGE----VIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             ETTEEEEEET---TSC----EEEESEEEECSCEEECC
T ss_pred             cCCEEEEEEC---CCC----EEECCEEEECcCCCcCH
Confidence            8777766653   453    68999999999987653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.17  E-value=5.8e-06  Score=87.53  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=31.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      ||+||||||+|+++|..|++.  |.+|+|||+.+..
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            899999999999999999998  9999999998754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.17  E-value=5.2e-06  Score=88.42  Aligned_cols=36  Identities=39%  Similarity=0.636  Sum_probs=33.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ++||+||||||+|+++|+.|++.|.+|+|||+.+.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            479999999999999999999999999999998653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.16  E-value=1.2e-05  Score=85.50  Aligned_cols=102  Identities=19%  Similarity=0.278  Sum_probs=77.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                +                         
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------~-------------------------  208 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ----------------G-------------------------  208 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT----------------S-------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc----------------c-------------------------
Confidence            57999999999999999999999999999997654210                0                         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                    ...+.+.|.+.+++.|+                   ++++++++++++.+
T Consensus       209 ------------------------------~~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~  239 (464)
T 2eq6_A          209 ------------------------------DPETAALLRRALEKEGI-------------------RVRTKTKAVGYEKK  239 (464)
T ss_dssp             ------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEEE
T ss_pred             ------------------------------CHHHHHHHHHHHHhcCC-------------------EEEcCCEEEEEEEe
Confidence                                          01233445666777776                   89999999999988


Q ss_pred             CCeEEEEEEeccC--CceeeEEEEecEEEeecCCChhh
Q 008258          204 DQCINVIASFLKE--GKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       204 ~~~v~v~~~~~~~--g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      ++++.+++..  +  |  ++.++.+|.||.|.|.++.+
T Consensus       240 ~~~~~v~~~~--~~~g--~~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          240 KDGLHVRLEP--AEGG--EGEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             TTEEEEEEEE--TTCC--SCEEEEESEEEECSCEEESC
T ss_pred             CCEEEEEEee--cCCC--ceeEEEcCEEEECCCcccCC
Confidence            7777776641  3  4  23468999999999976543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.15  E-value=9.8e-06  Score=87.50  Aligned_cols=36  Identities=25%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +.++||+||||||+|+++|+.|++.|.+|+||||.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            346899999999999999999999999999999975

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.13  E-value=2.7e-06  Score=90.07  Aligned_cols=38  Identities=37%  Similarity=0.538  Sum_probs=34.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||+|||||++||++|+.|++.|++|+|+|+++.+
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            45689999999999999999999999999999998765

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.13  E-value=4.4e-06  Score=88.17  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=31.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHh---CCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTK---LGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~---~Gi~v~viEr~~~   77 (572)
                      .||+|||||++|+++|..|++   .|++|+|||+.+.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            589999999999999999999   8999999999874

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.13  E-value=1.9e-06  Score=91.40  Aligned_cols=38  Identities=26%  Similarity=0.396  Sum_probs=35.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||+|||||++||++|..|++.|.+|+|+||++.+
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~   46 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   46 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            35689999999999999999999999999999999765

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.13  E-value=1.9e-06  Score=90.16  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=33.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIK--CSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~--v~viEr~~~~   78 (572)
                      .++||+||||||+|+++|..|++.|.+  |+|||+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC
Confidence            457999999999999999999999984  9999997653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.09  E-value=7e-06  Score=86.95  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=32.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      .||+||||||+|+++|..|++.  |.+|+|||+.+..
T Consensus         4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            6899999999999999999998  8899999998755

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.09  E-value=7.1e-06  Score=89.55  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=32.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      .+|+||||||+|+++|..|++.  |.+|+|||+.+.+
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            3799999999999999999998  8999999998765

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.08  E-value=4.3e-06  Score=88.77  Aligned_cols=35  Identities=46%  Similarity=0.761  Sum_probs=32.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +||+||||||+|+++|..|++.|.+|+|||+.+.+
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~   36 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKAL   36 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            69999999999999999999999999999998643

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.08  E-value=3.5e-06  Score=86.71  Aligned_cols=35  Identities=46%  Similarity=0.616  Sum_probs=32.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ....||+|||||++||++|+.|+++|++|+|+|++
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            34579999999999999999999999999999998

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.06  E-value=6.7e-06  Score=84.72  Aligned_cols=34  Identities=32%  Similarity=0.485  Sum_probs=31.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .||+||||||+|+++|..|++.| +|+|||+.+..
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            59999999999999999999999 99999998754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.05  E-value=2.4e-05  Score=83.81  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=33.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..++||+||||||+|+++|+.|++.|.+|+||||.+
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~   39 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE   39 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence            346899999999999999999999999999999854

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.00  E-value=7.4e-06  Score=87.98  Aligned_cols=62  Identities=24%  Similarity=0.375  Sum_probs=48.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC------------Ceeee---ChhHHHHHHhhcchHHH
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP------------QAHFI---NNRYALVFRKLDGLAEE  104 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~------------~a~~l---~~rt~e~l~~l~Gl~~~  104 (572)
                      ..+||+|||||++||++|+.|+++|++|+|+|+++.+.-.-            .++.+   .+..+++++++ |+.+.
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~l-gl~~~   88 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSL-GLREK   88 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHT-TCGGG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHc-CCccc
Confidence            35799999999999999999999999999999997653211            11222   36788999999 87654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.99  E-value=1.2e-05  Score=86.29  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=32.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~   76 (572)
                      ++||+||||||+|+++|..|++.   |.+|+||||.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            37999999999999999999999   99999999976

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.99  E-value=3.3e-06  Score=91.13  Aligned_cols=38  Identities=37%  Similarity=0.507  Sum_probs=34.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~   78 (572)
                      +...||+|||||++||++|..|+++| .+|+|+|+++.+
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            44579999999999999999999999 999999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.98  E-value=1.6e-05  Score=82.98  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=32.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~   78 (572)
                      .+|+|||||++|+++|..|++.|.  +|+|||+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            489999999999999999999998  89999998743

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.97  E-value=1.9e-05  Score=82.55  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=32.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIK--CSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~--v~viEr~~~~   78 (572)
                      .+|+||||||+|+++|..|++.|.+  |+|||+.+.+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCC
Confidence            3899999999999999999999988  9999998764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.97  E-value=9.9e-06  Score=86.91  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=33.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++||+||||||+|+++|..|++. .+|+|||+.+.+
T Consensus       106 ~~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~  142 (493)
T 1y56_A          106 RVVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWL  142 (493)
T ss_dssp             EEEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSS
T ss_pred             cccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCC
Confidence            3457999999999999999999999 999999998754

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.97  E-value=5.3e-06  Score=86.51  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=33.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~   78 (572)
                      .++||+|||||++||++|..|++. |.+|+|+|+++.+
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            468999999999999999999999 9999999998643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.96  E-value=2.4e-05  Score=82.57  Aligned_cols=34  Identities=21%  Similarity=0.378  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~   78 (572)
                      +|+||||||+|+++|..|++.|  .+|+|||+.+..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            6999999999999999999998  579999997654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.95  E-value=6.2e-06  Score=88.27  Aligned_cols=38  Identities=34%  Similarity=0.541  Sum_probs=34.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.+.||+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~   46 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP   46 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            44679999999999999999999999999999998764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.94  E-value=3.4e-05  Score=81.72  Aligned_cols=99  Identities=18%  Similarity=0.213  Sum_probs=73.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                .+ +                      
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------~~-~----------------------  207 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP----------------SF-D----------------------  207 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST----------------TS-C----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh----------------hh-h----------------------
Confidence            35799999999999999999999999999998764310                00 0                      


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       208 --------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  236 (450)
T 1ges_A          208 --------------------------------PMISETLVEVMNAEGP-------------------QLHTNAIPKAVVK  236 (450)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHSC-------------------EEECSCCEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                            0123345566667776                   8899999999987


Q ss_pred             eCCe-EEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       203 ~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      ++++ +.+++.   +|+    ++.+|.||.|.|.++.
T Consensus       237 ~~~~~~~v~~~---~g~----~i~~D~vv~a~G~~p~  266 (450)
T 1ges_A          237 NTDGSLTLELE---DGR----SETVDCLIWAIGREPA  266 (450)
T ss_dssp             CTTSCEEEEET---TSC----EEEESEEEECSCEEES
T ss_pred             eCCcEEEEEEC---CCc----EEEcCEEEECCCCCcC
Confidence            6554 555553   553    6899999999997654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.93  E-value=9.8e-05  Score=78.70  Aligned_cols=104  Identities=18%  Similarity=0.336  Sum_probs=76.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                + +                      
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------~-~----------------------  223 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS----------------M-D----------------------  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS----------------S-C----------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc----------------c-C----------------------
Confidence            457999999999999999999999999999998654210                0 0                      


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       224 --------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  252 (478)
T 1v59_A          224 --------------------------------GEVAKATQKFLKKQGL-------------------DFKLSTKVISAKR  252 (478)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                            1233445666677776                   8999999999987


Q ss_pred             --eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          203 --TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       203 --~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                        +++.+.+++....+|  ...++.+|.||.|.|....
T Consensus       253 ~~~~~~~~v~~~~~~~g--~~~~~~~D~vv~a~G~~p~  288 (478)
T 1v59_A          253 NDDKNVVEIVVEDTKTN--KQENLEAEVLLVAVGRRPY  288 (478)
T ss_dssp             ETTTTEEEEEEEETTTT--EEEEEEESEEEECSCEEEC
T ss_pred             ecCCCeEEEEEEEcCCC--CceEEECCEEEECCCCCcC
Confidence              556666666522223  2346899999999997643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.93  E-value=5.1e-05  Score=80.38  Aligned_cols=101  Identities=18%  Similarity=0.375  Sum_probs=76.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+                   ++                     
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  209 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-------------------GF---------------------  209 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-------------------cc---------------------
Confidence            45899999999999999999999999999998765420                   00                     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                    + ..+.+.+.+.+++.|+                   ++++++++++++.
T Consensus       210 ------------------------------~-~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  239 (455)
T 1ebd_A          210 ------------------------------E-KQMAAIIKKRLKKKGV-------------------EVVTNALAKGAEE  239 (455)
T ss_dssp             ------------------------------C-HHHHHHHHHHHHHTTC-------------------EEEESEEEEEEEE
T ss_pred             ------------------------------C-HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                          0 1223345566677776                   8999999999998


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +++++.+++.  ++|+  ..++.+|.||.|.|.+.
T Consensus       240 ~~~~~~v~~~--~~g~--~~~~~~D~vv~a~G~~p  270 (455)
T 1ebd_A          240 REDGVTVTYE--ANGE--TKTIDADYVLVTVGRRP  270 (455)
T ss_dssp             ETTEEEEEEE--ETTE--EEEEEESEEEECSCEEE
T ss_pred             eCCeEEEEEE--eCCc--eeEEEcCEEEECcCCCc
Confidence            8777777665  1332  23689999999999764

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.93  E-value=7.9e-06  Score=85.67  Aligned_cols=37  Identities=30%  Similarity=0.571  Sum_probs=34.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~   78 (572)
                      .++||+|||||++||++|+.|+++| .+|+|+|+++.+
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            4579999999999999999999999 999999998765

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.92  E-value=7.3e-06  Score=85.02  Aligned_cols=38  Identities=29%  Similarity=0.390  Sum_probs=34.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...+||+|||||++||++|..|++.|.+|+|+|+++.+
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            45689999999999999999999999999999998653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.88  E-value=0.00017  Score=76.36  Aligned_cols=141  Identities=13%  Similarity=0.118  Sum_probs=84.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCCe----eeeChhHHHHHHhhcchH--HHHHhcCCCccc
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQA----HFINNRYALVFRKLDGLA--EEIERSQPPVDL  114 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~~~~~a----~~l~~rt~e~l~~l~Gl~--~~l~~~~~~~~~  114 (572)
                      .-+|+|||||.+|+=+|..|++.  |.+|++++|.+.+.+....    ...++...+.+..+ .-.  ..+.+..... .
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l-~~~~~~~~~~~~~~~-~  304 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSR-EHAERERLLREYHNT-N  304 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHS-CHHHHHHHHHHTGGG-T
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcC-CHHHHHHHHHHhhcc-C
Confidence            35799999999999999999999  9999999998876432211    12334444444443 111  1111100000 0


Q ss_pred             ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHh-cCceeeccCCcccccccccccceEEe
Q 008258          115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILM  193 (572)
Q Consensus       115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~  193 (572)
                                               +    .... ..+.....+.+..+.+.. .|                   ++++.
T Consensus       305 -------------------------~----~~~~-~~~~~~~~~~l~~~~~~~~~~-------------------v~i~~  335 (463)
T 3s5w_A          305 -------------------------Y----SVVD-TDLIERIYGVFYRQKVSGIPR-------------------HAFRC  335 (463)
T ss_dssp             -------------------------S----SCBC-HHHHHHHHHHHHHHHHHCCCC-------------------SEEET
T ss_pred             -------------------------C----CcCC-HHHHHHHHHHHHHHHhcCCCC-------------------eEEEe
Confidence                                     0    0000 000011112222222222 23                   48999


Q ss_pred             ccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258          194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (572)
Q Consensus       194 g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~  236 (572)
                      +++|++++.+++++.+++....+|  +++++.+|.||-|-|..
T Consensus       336 ~~~v~~v~~~~~~~~v~~~~~~~g--~~~~~~~D~Vv~AtG~~  376 (463)
T 3s5w_A          336 MTTVERATATAQGIELALRDAGSG--ELSVETYDAVILATGYE  376 (463)
T ss_dssp             TEEEEEEEEETTEEEEEEEETTTC--CEEEEEESEEEECCCEE
T ss_pred             CCEEEEEEecCCEEEEEEEEcCCC--CeEEEECCEEEEeeCCC
Confidence            999999999889988888754445  44579999999999965

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.88  E-value=1.3e-05  Score=84.45  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~   77 (572)
                      +|+|||||++|+++|..|++.+  ++|+|||+++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            6999999999999999999875  88999998764

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.88  E-value=6.7e-06  Score=87.49  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      ..++||+||||||+|+++|+.|+++|.+|+||||
T Consensus         3 ~~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk   36 (463)
T 4dna_A            3 AFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE   36 (463)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC
Confidence            3468999999999999999999999999999999

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.83  E-value=7.4e-06  Score=87.84  Aligned_cols=36  Identities=25%  Similarity=0.234  Sum_probs=33.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..++||+||||||+|+++|+.|++.|.+|+||||.+
T Consensus         6 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            6 VINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            446899999999999999999999999999999964

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.82  E-value=7.5e-05  Score=80.68  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=33.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|||+||||||+|+++|+.++++|.+|.|||+...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            58999999999999999999999999999998764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.82  E-value=9e-05  Score=78.72  Aligned_cols=99  Identities=19%  Similarity=0.275  Sum_probs=74.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                .+ +                       
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~----------------~~-~-----------------------  206 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF----------------QF-D-----------------------  206 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST----------------TS-C-----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc----------------cc-C-----------------------
Confidence            4799999999999999999999999999998764310                00 0                       


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                     ..+...|.+.+++.|+                   ++++++++++++.+
T Consensus       207 -------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~~  236 (463)
T 2r9z_A          207 -------------------------------PLLSATLAENMHAQGI-------------------ETHLEFAVAALERD  236 (463)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTTC-------------------EEESSCCEEEEEEE
T ss_pred             -------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEEe
Confidence                                           0122345566667776                   89999999999987


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      ++++.+++.   +|+  + ++.+|.||.|.|.+..
T Consensus       237 ~~~~~v~~~---~G~--~-~i~~D~vv~a~G~~p~  265 (463)
T 2r9z_A          237 AQGTTLVAQ---DGT--R-LEGFDSVIWAVGRAPN  265 (463)
T ss_dssp             TTEEEEEET---TCC--E-EEEESEEEECSCEEES
T ss_pred             CCeEEEEEe---CCc--E-EEEcCEEEECCCCCcC
Confidence            777666653   553  2 5899999999997653

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.82  E-value=2.4e-05  Score=83.88  Aligned_cols=38  Identities=34%  Similarity=0.438  Sum_probs=34.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ....||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~   68 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   68 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence            34579999999999999999999999999999998755

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.81  E-value=1.2e-05  Score=85.93  Aligned_cols=37  Identities=38%  Similarity=0.624  Sum_probs=34.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||+||||||+|+++|+.|++.|.+|+||||.+.+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   38 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            3589999999999999999999999999999998744

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.79  E-value=9.5e-05  Score=78.12  Aligned_cols=99  Identities=17%  Similarity=0.291  Sum_probs=72.5

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC  121 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~  121 (572)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+...               .+                       
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------------~~-----------------------  189 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV---------------YL-----------------------  189 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT---------------TC-----------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc---------------cC-----------------------
Confidence            3468999999999999999999999999999997653210               00                       


Q ss_pred             eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                                                      ...+.+.+.+.+++.|+                   ++++++++++++
T Consensus       190 --------------------------------~~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~  218 (447)
T 1nhp_A          190 --------------------------------DKEFTDVLTEEMEANNI-------------------TIATGETVERYE  218 (447)
T ss_dssp             --------------------------------CHHHHHHHHHHHHTTTE-------------------EEEESCCEEEEE
T ss_pred             --------------------------------CHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEE
Confidence                                            01234456677777776                   889999999998


Q ss_pred             eeCCeE-EEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          202 ATDQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       202 ~~~~~v-~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      .+ +.+ .+++    ++.    ++++|.||.|.|.+..
T Consensus       219 ~~-~~v~~v~~----~~~----~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          219 GD-GRVQKVVT----DKN----AYDADLVVVAVGVRPN  247 (447)
T ss_dssp             CS-SBCCEEEE----SSC----EEECSEEEECSCEEES
T ss_pred             cc-CcEEEEEE----CCC----EEECCEEEECcCCCCC
Confidence            65 333 2332    332    6899999999997653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.77  E-value=0.00012  Score=77.83  Aligned_cols=103  Identities=17%  Similarity=0.345  Sum_probs=76.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                + +                      
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------~-~----------------------  217 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT----------------M-D----------------------  217 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT----------------S-C----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc----------------c-c----------------------
Confidence            357999999999999999999999999999988654210                0 0                      


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       218 --------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  246 (470)
T 1dxl_A          218 --------------------------------AEIRKQFQRSLEKQGM-------------------KFKLKTKVVGVDT  246 (470)
T ss_dssp             --------------------------------HHHHHHHHHHHHHSSC-------------------CEECSEEEEEEEC
T ss_pred             --------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEE
Confidence                                            1223345666677776                   8999999999988


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +++++.+++....+|+  ..++.+|.||.|.|...
T Consensus       247 ~~~~~~v~~~~~~~g~--~~~~~~D~vv~a~G~~p  279 (470)
T 1dxl_A          247 SGDGVKLTVEPSAGGE--QTIIEADVVLVSAGRTP  279 (470)
T ss_dssp             SSSSEEEEEEESSSCC--CEEEEESEEECCCCEEE
T ss_pred             cCCeEEEEEEecCCCc--ceEEECCEEEECCCCCc
Confidence            7767777765321332  23689999999999764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.77  E-value=0.00018  Score=76.52  Aligned_cols=103  Identities=17%  Similarity=0.347  Sum_probs=75.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  213 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-------------------TL---------------------  213 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------TS---------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc-------------------cC---------------------
Confidence            35799999999999999999999999999998865421                   00                     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHH-HhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQL-EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS  201 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~  201 (572)
                                                     ...+.+.|.+.+ ++.|+                   ++++++++++++
T Consensus       214 -------------------------------d~~~~~~l~~~l~~~~gv-------------------~i~~~~~v~~i~  243 (468)
T 2qae_A          214 -------------------------------DEDVTNALVGALAKNEKM-------------------KFMTSTKVVGGT  243 (468)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHTCC-------------------EEECSCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHhhcCCc-------------------EEEeCCEEEEEE
Confidence                                           012234456666 67776                   899999999999


Q ss_pred             eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      .+++++.+++.. .+|  +..++.+|.||.|.|.++.
T Consensus       244 ~~~~~~~v~~~~-~~g--~~~~i~~D~vv~a~G~~p~  277 (468)
T 2qae_A          244 NNGDSVSLEVEG-KNG--KRETVTCEALLVSVGRRPF  277 (468)
T ss_dssp             ECSSSEEEEEEC-C-----EEEEEESEEEECSCEEEC
T ss_pred             EcCCeEEEEEEc-CCC--ceEEEECCEEEECCCcccC
Confidence            877777776641 123  2347899999999997653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.76  E-value=0.00023  Score=75.71  Aligned_cols=104  Identities=18%  Similarity=0.332  Sum_probs=76.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.               .+                        
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------~~------------------------  218 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV---------------GI------------------------  218 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS---------------SC------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc---------------cc------------------------
Confidence            357999999999999999999999999999988654210               00                        


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                    + ..+.+.+.+.+++.|+                   ++++++++++++.
T Consensus       219 ------------------------------~-~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  248 (474)
T 1zmd_A          219 ------------------------------D-MEISKNFQRILQKQGF-------------------KFKLNTKVTGATK  248 (474)
T ss_dssp             ------------------------------C-HHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEE
T ss_pred             ------------------------------C-HHHHHHHHHHHHHCCC-------------------EEEeCceEEEEEE
Confidence                                          0 1223345666777777                   8999999999998


Q ss_pred             eCCe-EEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++++ +.+++....++  ...++.+|.||.|.|...
T Consensus       249 ~~~~~~~v~~~~~~~~--~~~~i~~D~vv~a~G~~p  282 (474)
T 1zmd_A          249 KSDGKIDVSIEAASGG--KAEVITCDVLLVCIGRRP  282 (474)
T ss_dssp             CTTSCEEEEEEETTSC--CCEEEEESEEEECSCEEE
T ss_pred             cCCceEEEEEEecCCC--CceEEEcCEEEECcCCCc
Confidence            7766 76666421122  123689999999999764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.73  E-value=0.00011  Score=78.33  Aligned_cols=102  Identities=20%  Similarity=0.246  Sum_probs=75.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.                +                        
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~----------------~------------------------  224 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG----------------A------------------------  224 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT----------------S------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc----------------c------------------------
Confidence            457999999999999999999999999999987653210                0                        


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                    + ..+.+.+.+.+++.|+                   ++++++++++++.
T Consensus       225 ------------------------------~-~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~  254 (482)
T 1ojt_A          225 ------------------------------D-RDLVKVWQKQNEYRFD-------------------NIMVNTKTVAVEP  254 (482)
T ss_dssp             ------------------------------C-HHHHHHHHHHHGGGEE-------------------EEECSCEEEEEEE
T ss_pred             ------------------------------C-HHHHHHHHHHHHhcCC-------------------EEEECCEEEEEEE
Confidence                                          0 1223345566667776                   8999999999998


Q ss_pred             eCCeEEEEEEeccC-CceeeEEEEecEEEeecCCChh
Q 008258          203 TDQCINVIASFLKE-GKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       203 ~~~~v~v~~~~~~~-g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +++++.+++.+.++ |+    ++.+|.||.|-|.+..
T Consensus       255 ~~~~~~v~~~~~~~~g~----~~~~D~vv~a~G~~p~  287 (482)
T 1ojt_A          255 KEDGVYVTFEGANAPKE----PQRYDAVLVAAGRAPN  287 (482)
T ss_dssp             ETTEEEEEEESSSCCSS----CEEESCEEECCCEEEC
T ss_pred             cCCeEEEEEeccCCCce----EEEcCEEEECcCCCcC
Confidence            87777777761101 32    4789999999997653

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.73  E-value=1.9e-05  Score=81.37  Aligned_cols=35  Identities=37%  Similarity=0.450  Sum_probs=32.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +||+|||||++||++|..|++.|.+|+|+|+++.+
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            68999999999999999999999999999998643

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.73  E-value=0.00014  Score=84.15  Aligned_cols=37  Identities=30%  Similarity=0.499  Sum_probs=34.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||+||||||+|+++|+.|++.|++|+|||+.+.+
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~  163 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            3579999999999999999999999999999998654

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.72  E-value=2.4e-05  Score=83.70  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=34.3

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~   78 (572)
                      +..+||+|||||++||++|..|++.| .+|+|+|+.+.+
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            34689999999999999999999998 799999998754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.70  E-value=2e-05  Score=84.25  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=32.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .++||+||||||+|+++|+.|++.|.+|+||||.+
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46899999999999999999999999999999973

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.69  E-value=2.2e-05  Score=81.27  Aligned_cols=36  Identities=28%  Similarity=0.469  Sum_probs=33.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ++||+|||||++||++|..|++.|.+|+|+|+++.+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   38 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            369999999999999999999999999999998654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.69  E-value=0.00027  Score=74.98  Aligned_cols=101  Identities=20%  Similarity=0.353  Sum_probs=75.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+.                +   .                    
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------~---~--------------------  211 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN----------------E---D--------------------  211 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT----------------S---C--------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc----------------c---C--------------------
Confidence            357999999999999999999999999999987654210                0   0                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.+.+.+++.|+                   ++++++++++++.
T Consensus       212 --------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  240 (464)
T 2a8x_A          212 --------------------------------ADVSKEIEKQFKKLGV-------------------TILTATKVESIAD  240 (464)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHTC-------------------EEECSCEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCcEEEEEEE
Confidence                                            1222345566667776                   8999999999988


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +++++.+++.  ++|+  ..++.+|.||-|-|...
T Consensus       241 ~~~~~~v~~~--~~g~--~~~~~~D~vv~a~G~~p  271 (464)
T 2a8x_A          241 GGSQVTVTVT--KDGV--AQELKAEKVLQAIGFAP  271 (464)
T ss_dssp             CSSCEEEEEE--SSSC--EEEEEESEEEECSCEEE
T ss_pred             cCCeEEEEEE--cCCc--eEEEEcCEEEECCCCCc
Confidence            7777766664  2342  34689999999999654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.68  E-value=0.00014  Score=75.59  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~   77 (572)
                      +|+||||||+|+++|..|++.|  .+|+|||+++.
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            6999999999999999998875  68999998764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.68  E-value=3.3e-05  Score=83.47  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=34.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +.++||+||||||+|+++|..|++.|.+|+|||+.+.
T Consensus        41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~   77 (523)
T 1mo9_A           41 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF   77 (523)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4568999999999999999999999999999999864

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.68  E-value=3.9e-05  Score=78.32  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=32.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .||+|||||++|+.+|+.|++.|++|+|+|+++..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~   36 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKR   36 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCc
Confidence            58999999999999999999999999999998743

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.67  E-value=2.4e-05  Score=86.24  Aligned_cols=39  Identities=28%  Similarity=0.442  Sum_probs=34.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      +.++||+|||||++|+++|+.|++.|++|+||||.+...
T Consensus        44 ~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            346899999999999999999999999999999987653

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.67  E-value=3.6e-05  Score=81.03  Aligned_cols=37  Identities=22%  Similarity=0.377  Sum_probs=34.3

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||+|||||++||++|..|++.|.+|+|+|+++.+
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~   41 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYY   41 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCc
Confidence            4589999999999999999999999999999998654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.67  E-value=0.00036  Score=69.67  Aligned_cols=100  Identities=14%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+..                   +                       
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------~-----------------------  183 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA-------------------E-----------------------  183 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC-------------------C-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc-------------------C-----------------------
Confidence            4799999999999999999999999999998754310                   0                       


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                     ..+.+.|.+.+.+.|+                   ++++++++++++.+
T Consensus       184 -------------------------------~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~~  213 (320)
T 1trb_A          184 -------------------------------KILIKRLMDKVENGNI-------------------ILHTNRTLEEVTGD  213 (320)
T ss_dssp             -------------------------------HHHHHHHHHHHHTSSE-------------------EEECSCEEEEEEEC
T ss_pred             -------------------------------HHHHHHHHHhcccCCe-------------------EEEcCceeEEEEcC
Confidence                                           0112234455666676                   88999999999877


Q ss_pred             CCeEE-EEEEeccC-CceeeEEEEecEEEeecCCCh
Q 008258          204 DQCIN-VIASFLKE-GKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       204 ~~~v~-v~~~~~~~-g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++.++ +++....+ |  ...++.+|.||-|-|...
T Consensus       214 ~~~v~~v~~~~~~~~g--~~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          214 QMGVTGVRLRDTQNSD--NIESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             SSSEEEEEEECCTTCC--CCEEEECSEEEECSCEEE
T ss_pred             CCceEEEEEEeccCCC--ceEEEEcCEEEEEeCCCC
Confidence            65543 55552111 3  234789999999999654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.67  E-value=3.5e-05  Score=81.68  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=33.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...||+||||||+||++|..|++.|++|+|||+.+.+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM  157 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            3479999999999999999999999999999998654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.66  E-value=2.7e-05  Score=82.80  Aligned_cols=34  Identities=18%  Similarity=0.414  Sum_probs=32.3

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .++||+||||||+|+++|..|++.|.+|+|||+.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK   36 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC
Confidence            4589999999999999999999999999999996

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.65  E-value=0.00037  Score=74.54  Aligned_cols=101  Identities=18%  Similarity=0.289  Sum_probs=74.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...                +   .                    
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------~---d--------------------  214 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL----------------Q---D--------------------  214 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC----------------C---C--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc----------------C---C--------------------
Confidence            457999999999999999999999999999998754210                0   0                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.+.+.+++. +                   ++++++++++++.
T Consensus       215 --------------------------------~~~~~~l~~~l~~~-V-------------------~i~~~~~v~~i~~  242 (492)
T 3ic9_A          215 --------------------------------EEMKRYAEKTFNEE-F-------------------YFDAKARVISTIE  242 (492)
T ss_dssp             --------------------------------HHHHHHHHHHHHTT-S-------------------EEETTCEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHhhC-c-------------------EEEECCEEEEEEE
Confidence                                            01223344444443 4                   8899999999998


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +++++++++.. .+|  ++.++.+|.||-|-|...
T Consensus       243 ~~~~v~v~~~~-~~G--~~~~i~~D~Vi~a~G~~p  274 (492)
T 3ic9_A          243 KEDAVEVIYFD-KSG--QKTTESFQYVLAATGRKA  274 (492)
T ss_dssp             CSSSEEEEEEC-TTC--CEEEEEESEEEECSCCEE
T ss_pred             cCCEEEEEEEe-CCC--ceEEEECCEEEEeeCCcc
Confidence            88888777652 134  234789999999999754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.65  E-value=0.00042  Score=73.74  Aligned_cols=100  Identities=24%  Similarity=0.343  Sum_probs=76.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.+                   .+                     
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  219 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-------------------AV---------------------  219 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-------------------cc---------------------
Confidence            45799999999999999999999999999998764310                   00                     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                    + ..+.+.+.+.+++.|+                   ++++++++++++.
T Consensus       220 ------------------------------~-~~~~~~l~~~l~~~Gv-------------------~v~~~~~v~~i~~  249 (476)
T 3lad_A          220 ------------------------------D-EQVAKEAQKILTKQGL-------------------KILLGARVTGTEV  249 (476)
T ss_dssp             ------------------------------C-HHHHHHHHHHHHHTTE-------------------EEEETCEEEEEEE
T ss_pred             ------------------------------C-HHHHHHHHHHHHhCCC-------------------EEEECCEEEEEEE
Confidence                                          0 1233445666677776                   8999999999998


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~  236 (572)
                      +++++.+++.   ++.+ +.++.+|.||-|-|..
T Consensus       250 ~~~~~~v~~~---~~~g-~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          250 KNKQVTVKFV---DAEG-EKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             CSSCEEEEEE---SSSE-EEEEEESEEEECSCEE
T ss_pred             cCCEEEEEEE---eCCC-cEEEECCEEEEeeCCc
Confidence            8888888776   3322 3478999999999964

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.64  E-value=0.00023  Score=75.83  Aligned_cols=101  Identities=19%  Similarity=0.232  Sum_probs=73.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+                .+   .                    
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~----------------~~---d--------------------  225 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR----------------KF---D--------------------  225 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT----------------TS---C--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc----------------cc---C--------------------
Confidence            35799999999999999999999999999998765320                00   0                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+...|.+.+++.|+                   ++++++++++++.
T Consensus       226 --------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  254 (479)
T 2hqm_A          226 --------------------------------ECIQNTITDHYVKEGI-------------------NVHKLSKIVKVEK  254 (479)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHhCCe-------------------EEEeCCEEEEEEE
Confidence                                            1122345566667776                   8999999999987


Q ss_pred             eCCe--EEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          203 TDQC--INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       203 ~~~~--v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      ++++  +.+++.   +|+   .++.+|.||.|-|.+...
T Consensus       255 ~~~~~~~~v~~~---~G~---~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          255 NVETDKLKIHMN---DSK---SIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             CC-CCCEEEEET---TSC---EEEEESEEEECSCEEECC
T ss_pred             cCCCcEEEEEEC---CCc---EEEEcCEEEECCCCCCcc
Confidence            6555  555553   552   268999999999976543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.63  E-value=2.8e-05  Score=82.33  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=32.3

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .++||+||||||+|+++|..|++.|.+|+||||.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK   36 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC
Confidence            4589999999999999999999999999999996

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.63  E-value=3.1e-05  Score=82.42  Aligned_cols=34  Identities=18%  Similarity=0.446  Sum_probs=32.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .++||+||||||+|+++|+.|++.|.+|+|||+.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   36 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG   36 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4589999999999999999999999999999987

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.63  E-value=0.00021  Score=76.70  Aligned_cols=101  Identities=17%  Similarity=0.270  Sum_probs=74.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+                   .+                     
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  215 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-------------------KF---------------------  215 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-------------------TS---------------------
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-------------------cc---------------------
Confidence            34799999999999999999999999999998765320                   00                     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                    + ..+...+.+.+++.|+                   ++++++++++++.
T Consensus       216 ------------------------------d-~~~~~~l~~~l~~~gv-------------------~i~~~~~v~~i~~  245 (500)
T 1onf_A          216 ------------------------------D-ESVINVLENDMKKNNI-------------------NIVTFADVVEIKK  245 (500)
T ss_dssp             ------------------------------C-HHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEE
T ss_pred             ------------------------------c-hhhHHHHHHHHHhCCC-------------------EEEECCEEEEEEE
Confidence                                          0 1222345566777777                   8899999999987


Q ss_pred             eCCe-EEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       203 ~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      ++++ +.+++.   +|+  + ++.+|.||-|-|.....
T Consensus       246 ~~~~~~~v~~~---~g~--~-~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          246 VSDKNLSIHLS---DGR--I-YEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             SSTTCEEEEET---TSC--E-EEEESEEEECCCBCCTT
T ss_pred             cCCceEEEEEC---CCc--E-EEECCEEEECCCCCcCC
Confidence            6543 555543   553  1 38999999999976543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.62  E-value=3.7e-05  Score=81.42  Aligned_cols=38  Identities=34%  Similarity=0.468  Sum_probs=35.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +..+||+|||||++|+++|..|++.|.+|+|+||++..
T Consensus        18 ~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~   55 (475)
T 3p1w_A           18 GEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYY   55 (475)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence            35689999999999999999999999999999998754

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.62  E-value=2.8e-05  Score=82.68  Aligned_cols=34  Identities=26%  Similarity=0.545  Sum_probs=32.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ++||+||||||+|+++|..|++.|.+|+|||+.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            6899999999999999999999999999999975

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.61  E-value=3.8e-05  Score=82.47  Aligned_cols=34  Identities=21%  Similarity=0.453  Sum_probs=32.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ++||+||||||+|+++|..|++.|.+|+|||+.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4799999999999999999999999999999974

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.60  E-value=0.00031  Score=73.31  Aligned_cols=100  Identities=18%  Similarity=0.274  Sum_probs=75.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...               .+                        
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~---------------~~------------------------  192 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLAR---------------VA------------------------  192 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT---------------TS------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhh---------------hc------------------------
Confidence            357999999999999999999999999999987654210               00                        


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                     ...+.+.+.+.+++.|+                   ++++++++++++.
T Consensus       193 -------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  222 (415)
T 3lxd_A          193 -------------------------------GEALSEFYQAEHRAHGV-------------------DLRTGAAMDCIEG  222 (415)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEEETCCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHhCCC-------------------EEEECCEEEEEEe
Confidence                                           01334456666777787                   8999999999988


Q ss_pred             eCCeE-EEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          203 TDQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       203 ~~~~v-~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +++.+ .+++.   +|+    ++.||.||-|-|....
T Consensus       223 ~~~~v~~v~l~---dG~----~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          223 DGTKVTGVRMQ---DGS----VIPADIVIVGIGIVPC  252 (415)
T ss_dssp             SSSBEEEEEES---SSC----EEECSEEEECSCCEES
T ss_pred             cCCcEEEEEeC---CCC----EEEcCEEEECCCCccC
Confidence            76665 34443   554    6899999999998654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.59  E-value=0.00031  Score=75.32  Aligned_cols=99  Identities=16%  Similarity=0.220  Sum_probs=75.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.+                   .+                     
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~---------------------  221 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP-------------------YE---------------------  221 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC-------------------CS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------cc---------------------
Confidence            45899999999999999999999999999998765421                   00                     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                    + ..+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       222 ------------------------------d-~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~  251 (499)
T 1xdi_A          222 ------------------------------D-ADAALVLEESFAERGV-------------------RLFKNARAASVTR  251 (499)
T ss_dssp             ------------------------------S-HHHHHHHHHHHHHTTC-------------------EEETTCCEEEEEE
T ss_pred             ------------------------------C-HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                          0 1233445666777787                   8999999999988


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +++++.++..   +|+    ++++|.||-|-|.++.
T Consensus       252 ~~~~v~v~~~---~g~----~i~aD~Vv~a~G~~p~  280 (499)
T 1xdi_A          252 TGAGVLVTMT---DGR----TVEGSHALMTIGSVPN  280 (499)
T ss_dssp             CSSSEEEEET---TSC----EEEESEEEECCCEEEC
T ss_pred             eCCEEEEEEC---CCc----EEEcCEEEECCCCCcC
Confidence            7777665532   443    6899999999997654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.58  E-value=0.00041  Score=72.15  Aligned_cols=108  Identities=16%  Similarity=0.327  Sum_probs=78.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...                  .                       
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~------------------~-----------------------  181 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMAR------------------V-----------------------  181 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT------------------T-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhh------------------c-----------------------
Confidence            47999999999999999999999999999987643100                  0                       


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                  + -..+.+.|.+.+++.|+                   ++++++++++++.+
T Consensus       182 ----------------------------~-~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~~  213 (404)
T 3fg2_P          182 ----------------------------V-TPEISSYFHDRHSGAGI-------------------RMHYGVRATEIAAE  213 (404)
T ss_dssp             ----------------------------S-CHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEEE
T ss_pred             ----------------------------c-CHHHHHHHHHHHHhCCc-------------------EEEECCEEEEEEec
Confidence                                        0 01334456677777787                   88999999999887


Q ss_pred             CCeEE-EEEEeccCCceeeEEEEecEEEeecCCChh--hhhhcCCcc
Q 008258          204 DQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGIDL  247 (572)
Q Consensus       204 ~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~--VR~~lg~~~  247 (572)
                      ++.++ +++.   +|+    ++.||.||-|-|....  +-+.+|+..
T Consensus       214 ~~~v~~V~~~---dG~----~i~aD~Vv~a~G~~p~~~l~~~~gl~~  253 (404)
T 3fg2_P          214 GDRVTGVVLS---DGN----TLPCDLVVVGVGVIPNVEIAAAAGLPT  253 (404)
T ss_dssp             TTEEEEEEET---TSC----EEECSEEEECCCEEECCHHHHHTTCCB
T ss_pred             CCcEEEEEeC---CCC----EEEcCEEEECcCCccCHHHHHhCCCCC
Confidence            66653 4443   554    6899999999997543  234445443

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.58  E-value=0.00041  Score=73.73  Aligned_cols=98  Identities=20%  Similarity=0.390  Sum_probs=75.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      -+|+|||||++|+-+|..|++. |.+|+++|+.+.+...               .+                        
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~---------------~~------------------------  200 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG---------------FT------------------------  200 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT---------------TS------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc---------------cc------------------------
Confidence            5799999999999999999999 9999999987543110               00                        


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                     ...+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       201 -------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  230 (472)
T 3iwa_A          201 -------------------------------SKSLSQMLRHDLEKNDV-------------------VVHTGEKVVRLEG  230 (472)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEE
T ss_pred             -------------------------------CHHHHHHHHHHHHhcCC-------------------EEEeCCEEEEEEc
Confidence                                           01334456667777777                   8899999999988


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +++.+++++.   +|+    ++.+|.||-|-|...
T Consensus       231 ~~~~v~v~~~---~g~----~i~aD~Vv~a~G~~p  258 (472)
T 3iwa_A          231 ENGKVARVIT---DKR----TLDADLVILAAGVSP  258 (472)
T ss_dssp             SSSBEEEEEE---SSC----EEECSEEEECSCEEE
T ss_pred             cCCeEEEEEe---CCC----EEEcCEEEECCCCCc
Confidence            7777777665   553    689999999999754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.57  E-value=0.00034  Score=73.44  Aligned_cols=108  Identities=13%  Similarity=0.281  Sum_probs=76.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+...               .+                         
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~---------------~~-------------------------  189 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER---------------VT-------------------------  189 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT---------------TS-------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc---------------hh-------------------------
Confidence            47999999999999999999999999999987543110               00                         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee-
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA-  202 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~-  202 (572)
                                                   + ..+...+.+.+++.|+                   ++++++++++++. 
T Consensus       190 -----------------------------~-~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~~  220 (431)
T 1q1r_A          190 -----------------------------A-PPVSAFYEHLHREAGV-------------------DIRTGTQVCGFEMS  220 (431)
T ss_dssp             -----------------------------C-HHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEEC
T ss_pred             -----------------------------h-HHHHHHHHHHHHhCCe-------------------EEEeCCEEEEEEec
Confidence                                         0 1223345566677777                   8899999999986 


Q ss_pred             -eCCeE-EEEEEeccCCceeeEEEEecEEEeecCCChh--hhhhcCCcc
Q 008258          203 -TDQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGIDL  247 (572)
Q Consensus       203 -~~~~v-~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~--VR~~lg~~~  247 (572)
                       +++.+ .+++.   +|+    ++.+|.||.|.|....  +-+.+|+..
T Consensus       221 ~~~~~v~~v~~~---~G~----~i~~D~Vv~a~G~~p~~~l~~~~gl~~  262 (431)
T 1q1r_A          221 TDQQKVTAVLCE---DGT----RLPADLVIAGIGLIPNCELASAAGLQV  262 (431)
T ss_dssp             TTTCCEEEEEET---TSC----EEECSEEEECCCEEECCHHHHHTTCCB
T ss_pred             cCCCcEEEEEeC---CCC----EEEcCEEEECCCCCcCcchhhccCCCC
Confidence             44444 34443   453    6899999999997543  334456544

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.56  E-value=0.0002  Score=74.76  Aligned_cols=109  Identities=25%  Similarity=0.394  Sum_probs=77.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.         ++      .++                       
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l---------~~------~~~-----------------------  184 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL---------VR------VLG-----------------------  184 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------HH------HHC-----------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc---------hh------hcC-----------------------
Confidence            3579999999999999999999999999999876542         00      000                       


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.+.+.+++.|+                   ++++++++++++.
T Consensus       185 --------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~  213 (410)
T 3ef6_A          185 --------------------------------RRIGAWLRGLLTELGV-------------------QVELGTGVVGFSG  213 (410)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHTC-------------------EEECSCCEEEEEC
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEec
Confidence                                            1223345566677777                   8899999999987


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh--hhhhcCCcc
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGIDL  247 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~--VR~~lg~~~  247 (572)
                      ++....+++.   +|+    ++.||.||-|-|....  +-+.+|+..
T Consensus       214 ~~~~~~v~~~---dg~----~i~aD~Vv~a~G~~p~~~l~~~~gl~~  253 (410)
T 3ef6_A          214 EGQLEQVMAS---DGR----SFVADSALICVGAEPADQLARQAGLAC  253 (410)
T ss_dssp             SSSCCEEEET---TSC----EEECSEEEECSCEEECCHHHHHTTCCB
T ss_pred             cCcEEEEEEC---CCC----EEEcCEEEEeeCCeecHHHHHhCCCcc
Confidence            6544455554   554    6899999999998654  234445443

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.53  E-value=5.4e-05  Score=84.63  Aligned_cols=38  Identities=34%  Similarity=0.484  Sum_probs=34.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+.||+||||||+||++|..|+++|++|+||||.+..
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~  426 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDL  426 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            45679999999999999999999999999999998654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.52  E-value=0.00022  Score=75.64  Aligned_cols=36  Identities=36%  Similarity=0.576  Sum_probs=32.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI  206 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            357999999999999999999999999999998654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.51  E-value=6.1e-05  Score=79.93  Aligned_cols=33  Identities=36%  Similarity=0.588  Sum_probs=31.6

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      .++||+||||||+|+++|..|++.|.+|+|||+
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~   36 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG   36 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc
Confidence            458999999999999999999999999999998

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.51  E-value=0.00037  Score=74.01  Aligned_cols=97  Identities=18%  Similarity=0.269  Sum_probs=72.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+++|+.+.+.+      +.                                  
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~~----------------------------------  215 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR------ED----------------------------------  215 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT------SC----------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC------CC----------------------------------
Confidence            35799999999999999999999999999998765421      00                                  


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       216 --------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  244 (467)
T 1zk7_A          216 --------------------------------PAIGEAVTAAFRAEGI-------------------EVLEHTQASQVAH  244 (467)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEETTCCEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEE
Confidence                                            1223345566667776                   8889999999988


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +++.+.+++    ++.    ++.+|.||-|-|.+..
T Consensus       245 ~~~~~~v~~----~~~----~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          245 MDGEFVLTT----THG----ELRADKLLVATGRTPN  272 (467)
T ss_dssp             ETTEEEEEE----TTE----EEEESEEEECSCEEES
T ss_pred             eCCEEEEEE----CCc----EEEcCEEEECCCCCcC
Confidence            766655543    231    6899999999998654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.50  E-value=7.4e-05  Score=77.24  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~   76 (572)
                      ++||+||||||+|+++|..|++.|  .+|+|+|+.+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            479999999999999999999998  5699999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.50  E-value=0.00043  Score=74.65  Aligned_cols=100  Identities=12%  Similarity=0.265  Sum_probs=74.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+.+.+.                +                         
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~----------------~-------------------------  253 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI----------------K-------------------------  253 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC----------------C-------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc----------------c-------------------------
Confidence            57999999999999999999999999999987654210                0                         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ..+...|.+.+++.|+                   ++++++++++++.+
T Consensus       254 -----------------------------~-~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~~  284 (523)
T 1mo9_A          254 -----------------------------D-NETRAYVLDRMKEQGM-------------------EIISGSNVTRIEED  284 (523)
T ss_dssp             -----------------------------S-HHHHHHHHHHHHHTTC-------------------EEESSCEEEEEEEC
T ss_pred             -----------------------------c-HHHHHHHHHHHHhCCc-------------------EEEECCEEEEEEEc
Confidence                                         0 1223446667777787                   89999999999876


Q ss_pred             CCe----EEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258          204 DQC----INVIASFLKEGKCTERNIQCNILIGTDGAGSTV  239 (572)
Q Consensus       204 ~~~----v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V  239 (572)
                      +++    +.+++.   +|+   .++.||.||-|-|.++..
T Consensus       285 ~~~~v~~~~v~~~---~G~---~~i~aD~Vv~A~G~~p~~  318 (523)
T 1mo9_A          285 ANGRVQAVVAMTP---NGE---MRIETDFVFLGLGEQPRS  318 (523)
T ss_dssp             TTSBEEEEEEEET---TEE---EEEECSCEEECCCCEECC
T ss_pred             CCCceEEEEEEEC---CCc---EEEEcCEEEECcCCccCC
Confidence            555    445442   441   368999999999987654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.49  E-value=4.9e-05  Score=81.49  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=31.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHh-CCCCEEEEcC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEK   74 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~-~Gi~v~viEr   74 (572)
                      +.++||+||||||+|+++|+.|++ .|.+|+|||+
T Consensus         5 ~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            5 SKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            346899999999999999999999 9999999995

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.49  E-value=0.00038  Score=74.54  Aligned_cols=98  Identities=19%  Similarity=0.242  Sum_probs=73.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      .-+|+|||||+.|+-+|..|++.   |.+|+|+|+.+.+..                .+   .                 
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~----------------~~---d-----------------  234 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR----------------GF---D-----------------  234 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT----------------TS---C-----------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc----------------cc---C-----------------
Confidence            35799999999999999999999   999999998765421                00   0                 


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                                                         ..+...|.+.+++.|+                   ++++++++++
T Consensus       235 -----------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~  260 (495)
T 2wpf_A          235 -----------------------------------ETIREEVTKQLTANGI-------------------EIMTNENPAK  260 (495)
T ss_dssp             -----------------------------------HHHHHHHHHHHHHTTC-------------------EEEESCCEEE
T ss_pred             -----------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEE
Confidence                                               0223345566677777                   8999999999


Q ss_pred             EeeeCCe-EEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          200 VSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       200 v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++.++++ +.+++.   +|+    ++.+|.||.|-|.+.
T Consensus       261 i~~~~~~~~~v~~~---~G~----~i~~D~vv~a~G~~p  292 (495)
T 2wpf_A          261 VSLNTDGSKHVTFE---SGK----TLDVDVVMMAIGRIP  292 (495)
T ss_dssp             EEECTTSCEEEEET---TSC----EEEESEEEECSCEEE
T ss_pred             EEEcCCceEEEEEC---CCc----EEEcCEEEECCCCcc
Confidence            9876543 555553   553    689999999999754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.48  E-value=0.00036  Score=74.57  Aligned_cols=98  Identities=15%  Similarity=0.221  Sum_probs=73.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      .-+|+|||||+.|+-+|..|++.   |.+|+|+|+.+.+.+                   .+                  
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-------------------~~------------------  229 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-------------------GF------------------  229 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-------------------TS------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc-------------------cc------------------
Confidence            35799999999999999999999   999999998765310                   00                  


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                                                       + ..+.+.|.+.+++.|+                   ++++++++++
T Consensus       230 ---------------------------------d-~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~  256 (490)
T 1fec_A          230 ---------------------------------D-SELRKQLTEQLRANGI-------------------NVRTHENPAK  256 (490)
T ss_dssp             ---------------------------------C-HHHHHHHHHHHHHTTE-------------------EEEETCCEEE
T ss_pred             ---------------------------------C-HHHHHHHHHHHHhCCC-------------------EEEeCCEEEE
Confidence                                             0 1223445666777776                   8999999999


Q ss_pred             EeeeCCe-EEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          200 VSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       200 v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++.++++ +.+++.   +|+    ++.+|.||.|-|.+.
T Consensus       257 i~~~~~~~~~v~~~---~G~----~i~~D~vv~a~G~~p  288 (490)
T 1fec_A          257 VTKNADGTRHVVFE---SGA----EADYDVVMLAIGRVP  288 (490)
T ss_dssp             EEECTTSCEEEEET---TSC----EEEESEEEECSCEEE
T ss_pred             EEEcCCCEEEEEEC---CCc----EEEcCEEEEccCCCc
Confidence            9876643 555543   553    689999999999754

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.47  E-value=7.4e-05  Score=81.13  Aligned_cols=37  Identities=32%  Similarity=0.473  Sum_probs=34.3

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4589999999999999999999999999999998754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.45  E-value=0.00072  Score=71.40  Aligned_cols=98  Identities=18%  Similarity=0.324  Sum_probs=72.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...               .+                         
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------~~-------------------------  189 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK---------------YF-------------------------  189 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT---------------TS-------------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh---------------hh-------------------------
Confidence            47999999999999999999999999999987654210               00                         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ..+...|.+.+++.|+                   ++++++++++++.+
T Consensus       190 -----------------------------~-~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~~  220 (452)
T 2cdu_A          190 -----------------------------D-KEFTDILAKDYEAHGV-------------------NLVLGSKVAAFEEV  220 (452)
T ss_dssp             -----------------------------C-HHHHHHHHHHHHHTTC-------------------EEEESSCEEEEEEE
T ss_pred             -----------------------------h-hhHHHHHHHHHHHCCC-------------------EEEcCCeeEEEEcC
Confidence                                         0 1233445666777787                   89999999999875


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++.++.. . . +|+    ++.+|.||-|-|...
T Consensus       221 ~~~v~~v-~-~-~g~----~i~~D~vv~a~G~~p  247 (452)
T 2cdu_A          221 DDEIITK-T-L-DGK----EIKSDIAILCIGFRP  247 (452)
T ss_dssp             TTEEEEE-E-T-TSC----EEEESEEEECCCEEE
T ss_pred             CCeEEEE-E-e-CCC----EEECCEEEECcCCCC
Confidence            6655422 2 1 343    689999999999754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.45  E-value=0.00087  Score=67.24  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=31.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~  208 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHL  208 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            47999999999999999999999999999987654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.45  E-value=0.00062  Score=74.07  Aligned_cols=35  Identities=34%  Similarity=0.488  Sum_probs=32.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+.+
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            37999999999999999999999999999987643

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.44  E-value=0.0013  Score=70.21  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=73.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+++++....                    +.+.                    
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l--------------------~~~d--------------------  224 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPL--------------------RGFD--------------------  224 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS--------------------TTSC--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccc--------------------ccCC--------------------
Confidence            347999999999999999999999999999975311                    0100                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.+.+.+++.|+                   ++++++++.+++.
T Consensus       225 --------------------------------~~~~~~l~~~l~~~gv-------------------~~~~~~~v~~i~~  253 (488)
T 3dgz_A          225 --------------------------------QQMSSLVTEHMESHGT-------------------QFLKGCVPSHIKK  253 (488)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEEETEEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence                                            1223345566677776                   8899999999987


Q ss_pred             e-CCeEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258          203 T-DQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (572)
Q Consensus       203 ~-~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~  236 (572)
                      . ++.+.+++...++|  ++.++.+|.||-|-|..
T Consensus       254 ~~~~~~~v~~~~~~~g--~~~~~~~D~vi~a~G~~  286 (488)
T 3dgz_A          254 LPTNQLQVTWEDHASG--KEDTGTFDTVLWAIGRV  286 (488)
T ss_dssp             CTTSCEEEEEEETTTT--EEEEEEESEEEECSCEE
T ss_pred             cCCCcEEEEEEeCCCC--eeEEEECCEEEEcccCC
Confidence            4 44566777632223  34468999999999954

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.43  E-value=9.5e-05  Score=78.67  Aligned_cols=37  Identities=30%  Similarity=0.429  Sum_probs=32.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~   78 (572)
                      ..+||+|||||++||++|..|++.|+ +|+|+|+.+.+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~   40 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   40 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence            35799999999999999999999999 89999998654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.43  E-value=0.00063  Score=70.84  Aligned_cols=36  Identities=31%  Similarity=0.513  Sum_probs=32.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+++|+.+.+
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL  180 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            357999999999999999999999999999988653

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.42  E-value=0.00081  Score=70.99  Aligned_cols=97  Identities=22%  Similarity=0.260  Sum_probs=73.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||+.|+-+|..|++.|.+|+++|+.+.+....               +                         
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------~-------------------------  187 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKY---------------F-------------------------  187 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT---------------C-------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccccc---------------C-------------------------
Confidence            479999999999999999999999999999876541100               0                         


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ..+.+.+.+.+++.|+                   ++++++++++++.+
T Consensus       188 -----------------------------d-~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~~  218 (452)
T 3oc4_A          188 -----------------------------D-KEMVAEVQKSLEKQAV-------------------IFHFEETVLGIEET  218 (452)
T ss_dssp             -----------------------------C-HHHHHHHHHHHHTTTE-------------------EEEETCCEEEEEEC
T ss_pred             -----------------------------C-HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEcc
Confidence                                         0 1233456667777776                   89999999999977


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++++.+++.   ++     ++.+|.||-|-|.+.
T Consensus       219 ~~~v~v~~~---~g-----~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          219 ANGIVLETS---EQ-----EISCDSGIFALNLHP  244 (452)
T ss_dssp             SSCEEEEES---SC-----EEEESEEEECSCCBC
T ss_pred             CCeEEEEEC---CC-----EEEeCEEEECcCCCC
Confidence            777755442   33     589999999999753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.39  E-value=0.0005  Score=73.24  Aligned_cols=35  Identities=34%  Similarity=0.616  Sum_probs=32.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  220 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH  220 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            45899999999999999999999999999998754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.39  E-value=8.1e-05  Score=79.69  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=30.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHh-CCCCEEEEcC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEK   74 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~-~Gi~v~viEr   74 (572)
                      ++||+||||||+|+++|+.|++ .|.+|+|||+
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            4899999999999999999999 9999999994

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.39  E-value=0.00012  Score=82.24  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=34.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ....||+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            34579999999999999999999999999999998754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.39  E-value=9.8e-05  Score=81.10  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=32.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ...+||+||||||+|+++|..|++.|.+|+|||+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            34589999999999999999999999999999984

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.39  E-value=0.0013  Score=65.97  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=31.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~  187 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF  187 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc
Confidence            47999999999999999999999999999987643

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.38  E-value=0.00085  Score=72.41  Aligned_cols=100  Identities=19%  Similarity=0.141  Sum_probs=75.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ...-+++|||||+.|+=+|..+++.|.+|+|+++...+                    ++..                  
T Consensus       221 ~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L--------------------~~~D------------------  262 (542)
T 4b1b_A          221 KDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL--------------------RGFD------------------  262 (542)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS--------------------TTSC------------------
T ss_pred             cCCceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc--------------------cccc------------------
Confidence            44458999999999999999999999999999864321                    1111                  


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                                                        .++...+.+.+++.|+                   +++.+..+..+
T Consensus       263 ----------------------------------~ei~~~l~~~l~~~gi-------------------~~~~~~~v~~~  289 (542)
T 4b1b_A          263 ----------------------------------QQCAVKVKLYMEEQGV-------------------MFKNGILPKKL  289 (542)
T ss_dssp             ----------------------------------HHHHHHHHHHHHHTTC-------------------EEEETCCEEEE
T ss_pred             ----------------------------------hhHHHHHHHHHHhhcc-------------------eeecceEEEEE
Confidence                                              1233456667777776                   88999999999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +..++.+.+++.   +++    ++.+|.|+.|-|.+-.
T Consensus       290 ~~~~~~~~v~~~---~~~----~~~~D~vLvAvGR~Pn  320 (542)
T 4b1b_A          290 TKMDDKILVEFS---DKT----SELYDTVLYAIGRKGD  320 (542)
T ss_dssp             EEETTEEEEEET---TSC----EEEESEEEECSCEEES
T ss_pred             EecCCeEEEEEc---CCC----eEEEEEEEEcccccCC
Confidence            999998887764   443    4679999999996543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.37  E-value=0.0019  Score=64.12  Aligned_cols=34  Identities=18%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG  177 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence            5799999999999999999999999999998754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.37  E-value=0.00089  Score=72.07  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=30.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+|+++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            346999999999999999999999999999974

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.35  E-value=0.00078  Score=68.61  Aligned_cols=35  Identities=26%  Similarity=0.408  Sum_probs=31.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  198 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEF  198 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence            47999999999999999999999999999987653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.33  E-value=0.0011  Score=70.81  Aligned_cols=108  Identities=17%  Similarity=0.286  Sum_probs=76.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~----~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      -+|+|||||+.|+-+|..|++    .|.+|+++++.+.+...               .+                     
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~---------------~l---------------------  224 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK---------------IL---------------------  224 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT---------------TS---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccc---------------cC---------------------
Confidence            479999999999999999987    48899999876532100               00                     


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                                                       + ..+.+.+.+.+++.|+                   ++++++++++
T Consensus       225 ---------------------------------~-~~~~~~~~~~l~~~GV-------------------~v~~~~~V~~  251 (493)
T 1m6i_A          225 ---------------------------------P-EYLSNWTMEKVRREGV-------------------KVMPNAIVQS  251 (493)
T ss_dssp             ---------------------------------C-HHHHHHHHHHHHTTTC-------------------EEECSCCEEE
T ss_pred             ---------------------------------C-HHHHHHHHHHHHhcCC-------------------EEEeCCEEEE
Confidence                                             0 1233445666777777                   8999999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh--hhhhcCCcc
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGIDL  247 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~--VR~~lg~~~  247 (572)
                      ++.+++.+.+++.   +|+    ++.||.||.|-|....  +-+.+|+..
T Consensus       252 i~~~~~~~~v~l~---dG~----~i~aD~Vv~a~G~~pn~~l~~~~gl~~  294 (493)
T 1m6i_A          252 VGVSSGKLLIKLK---DGR----KVETDHIVAAVGLEPNVELAKTGGLEI  294 (493)
T ss_dssp             EEEETTEEEEEET---TSC----EEEESEEEECCCEEECCTTHHHHTCCB
T ss_pred             EEecCCeEEEEEC---CCC----EEECCEEEECCCCCccHHHHHHcCCcc
Confidence            9877776666553   553    6899999999997653  333445543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.33  E-value=0.0015  Score=64.75  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            47999999999999999999999999999987643

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.30  E-value=0.00016  Score=80.30  Aligned_cols=38  Identities=26%  Similarity=0.482  Sum_probs=34.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ....||+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  142 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            34579999999999999999999999999999998654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.30  E-value=0.0001  Score=78.00  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHh-C------CCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTK-L------GIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~-~------Gi~v~viEr~~~~   78 (572)
                      .+||+||||||+|+.+|..|++ .      |++|+|||+.+.+
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            4689999999999999999999 7      9999999998654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.29  E-value=0.00016  Score=80.45  Aligned_cols=38  Identities=24%  Similarity=0.452  Sum_probs=34.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ....||+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            34579999999999999999999999999999998754

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.28  E-value=0.0011  Score=70.71  Aligned_cols=36  Identities=22%  Similarity=0.404  Sum_probs=32.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTC  229 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccch
Confidence            357999999999999999999999999999987654

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.27  E-value=0.0002  Score=81.32  Aligned_cols=37  Identities=27%  Similarity=0.484  Sum_probs=34.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ...+|+||||||+||++|+.|+++|++|+|+|+.+.+
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~  313 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  313 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence            3569999999999999999999999999999998765

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.26  E-value=0.00016  Score=77.93  Aligned_cols=38  Identities=21%  Similarity=0.363  Sum_probs=33.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~-~Gi~v~viEr~~~~   78 (572)
                      ..++|+||||||++|+.+|..|++ .|++|+|||+.+..
T Consensus        15 ~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~   53 (526)
T 3t37_A           15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP   53 (526)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCC
T ss_pred             CCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence            346999999999999999999998 68999999998653

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.24  E-value=0.00032  Score=76.65  Aligned_cols=40  Identities=30%  Similarity=0.309  Sum_probs=35.9

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKAF   78 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~-~Gi~v~viEr~~~~   78 (572)
                      |.+.++|++|||||++|+++|..|++ .|.+|+|||+....
T Consensus        20 ~~~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           20 VAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cCcccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            34567999999999999999999999 79999999998754

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.20  E-value=0.00014  Score=78.65  Aligned_cols=37  Identities=32%  Similarity=0.395  Sum_probs=33.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++|+||||||++|+++|..|++ |.+|+|+|+.+..
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             cCcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            356899999999999999999999 9999999998753

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.19  E-value=0.00019  Score=76.82  Aligned_cols=37  Identities=16%  Similarity=0.436  Sum_probs=33.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      ..+||+||||||+|+++|..|++.  |.+|+|||+.+.+
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            457999999999999999999887  8999999998754

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.17  E-value=0.00023  Score=75.53  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=33.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~   78 (572)
                      .+||+||||||+|+.+|..|++.|  ++|+|||+.+.+
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            469999999999999999999998  999999998765

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.16  E-value=0.003  Score=62.92  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=31.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~  189 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK  189 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence            4799999999999999999999999999998653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.14  E-value=0.00029  Score=82.12  Aligned_cols=37  Identities=24%  Similarity=0.522  Sum_probs=33.3

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~   78 (572)
                      ...||+||||||+|+++|..|++.|+ +|+|||+.+.+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            35799999999999999999999999 79999997643

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.12  E-value=0.0011  Score=70.89  Aligned_cols=58  Identities=22%  Similarity=0.315  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCC
Q 008258          156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (572)
Q Consensus       156 ~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~  235 (572)
                      .+...+.+.+++.|+                   ++++++++++++.  +++.+.... .+|+..++++.||+||-|-|.
T Consensus       273 ~~~~~~~~~L~~~GV-------------------~v~~~~~v~~v~~--~~~~~~~~~-~dg~~~~~~i~ad~viwa~Gv  330 (502)
T 4g6h_A          273 KLSSYAQSHLENTSI-------------------KVHLRTAVAKVEE--KQLLAKTKH-EDGKITEETIPYGTLIWATGN  330 (502)
T ss_dssp             HHHHHHHHHHHHTTC-------------------EEETTEEEEEECS--SEEEEEEEC-TTSCEEEEEEECSEEEECCCE
T ss_pred             HHHHHHHHHHHhcce-------------------eeecCceEEEEeC--CceEEEEEe-cCcccceeeeccCEEEEccCC
Confidence            344556677788887                   8999999999864  555555442 355545668999999999985

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.12  E-value=0.00028  Score=76.83  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=33.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~   77 (572)
                      ..++|+||||||.||+++|..|++.| .+|+|||+.+.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            34699999999999999999999997 89999999876

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.11  E-value=0.0013  Score=67.31  Aligned_cols=35  Identities=26%  Similarity=0.484  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee
Confidence            57999999999999999999999999999988654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.10  E-value=0.0023  Score=67.78  Aligned_cols=97  Identities=21%  Similarity=0.280  Sum_probs=72.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+++++.+.+..                   .+                     
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~-------------------~~---------------------  209 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS-------------------RF---------------------  209 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------cc---------------------
Confidence            45799999999999999999999999999998764310                   00                     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                    + ..+.+.|.+.+++.|+                   +++.++++++++.
T Consensus       210 ------------------------------~-~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  239 (463)
T 4dna_A          210 ------------------------------D-QDMRRGLHAAMEEKGI-------------------RILCEDIIQSVSA  239 (463)
T ss_dssp             ------------------------------C-HHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEE
T ss_pred             ------------------------------C-HHHHHHHHHHHHHCCC-------------------EEECCCEEEEEEE
Confidence                                          0 1233456667777787                   8899999999988


Q ss_pred             eCCe-EEEE-EEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQC-INVI-ASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~-v~v~-~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      ++++ +.++ +   ++|     ++.+|.||-|-|...
T Consensus       240 ~~~~~~~v~~~---~~g-----~i~aD~Vv~a~G~~p  268 (463)
T 4dna_A          240 DADGRRVATTM---KHG-----EIVADQVMLALGRMP  268 (463)
T ss_dssp             CTTSCEEEEES---SSC-----EEEESEEEECSCEEE
T ss_pred             cCCCEEEEEEc---CCC-----eEEeCEEEEeeCccc
Confidence            7665 4444 3   244     288999999999754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.05  E-value=0.0058  Score=60.98  Aligned_cols=35  Identities=20%  Similarity=0.463  Sum_probs=31.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTL  187 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcC
Confidence            47999999999999999999999999999987543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.03  E-value=0.0034  Score=62.88  Aligned_cols=35  Identities=29%  Similarity=0.559  Sum_probs=32.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            47999999999999999999999999999987653

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.03  E-value=0.00041  Score=74.46  Aligned_cols=37  Identities=24%  Similarity=0.468  Sum_probs=34.1

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||+|||+|++|+++|..|++.|.+|+|||+....
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   40 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW   40 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999998743

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.03  E-value=0.0029  Score=64.31  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~  201 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGL  201 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCC
Confidence            37999999999999999999999999999987543

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.97  E-value=0.00032  Score=77.60  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=33.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCC--------CCEEEEcCCC-CC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLG--------IKCSVLEKNK-AF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~G--------i~v~viEr~~-~~   78 (572)
                      ..+|+|||||++||++|..|++.|        ++|+|+|+.+ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            468999999999999999999999        9999999987 55

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.95  E-value=0.0005  Score=74.86  Aligned_cols=36  Identities=31%  Similarity=0.403  Sum_probs=33.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~   76 (572)
                      ...+|+||||||.||+++|..|++. |.+|+|||+.+
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            4569999999999999999999975 89999999987

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.94  E-value=0.00062  Score=73.80  Aligned_cols=38  Identities=16%  Similarity=0.323  Sum_probs=34.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~   78 (572)
                      ...+||+|||||++|+++|..|++. |.+|+|||+....
T Consensus        11 ~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             cCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            3569999999999999999999998 9999999998654

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.94  E-value=0.00063  Score=73.03  Aligned_cols=38  Identities=32%  Similarity=0.586  Sum_probs=34.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++|++|||+|++|+++|..|++.|.+|+|||+....
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            34689999999999999999999999999999998643

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.92  E-value=0.0033  Score=68.64  Aligned_cols=105  Identities=18%  Similarity=0.321  Sum_probs=75.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+.+.+                   .+                      
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~----------------------  226 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP-------------------PI----------------------  226 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------------------TS----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc-------------------cC----------------------
Confidence            4799999999999999999999999999998764321                   00                      


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                    ...+...|.+.+++.|+                   ++++++++++++.+
T Consensus       227 ------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~v~~i~~~  257 (588)
T 3ics_A          227 ------------------------------DYEMAAYVHEHMKNHDV-------------------ELVFEDGVDALEEN  257 (588)
T ss_dssp             ------------------------------CHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEGG
T ss_pred             ------------------------------CHHHHHHHHHHHHHcCC-------------------EEEECCeEEEEecC
Confidence                                          01223345566667776                   88899999999876


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh--hhhcCCcc
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV--RKLVGIDL  247 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V--R~~lg~~~  247 (572)
                      +++  +++.   +|+    ++.+|.||-|-|.....  -+.+|+..
T Consensus       258 ~~~--v~~~---~g~----~i~~D~Vi~a~G~~p~~~~l~~~g~~~  294 (588)
T 3ics_A          258 GAV--VRLK---SGS----VIQTDMLILAIGVQPESSLAKGAGLAL  294 (588)
T ss_dssp             GTE--EEET---TSC----EEECSEEEECSCEEECCHHHHHTTCCB
T ss_pred             CCE--EEEC---CCC----EEEcCEEEEccCCCCChHHHHhcCceE
Confidence            554  3333   453    68999999999976542  33445543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.89  E-value=0.0067  Score=59.94  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=31.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            57999999999999999999999999999987543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.88  E-value=0.0042  Score=65.75  Aligned_cols=36  Identities=22%  Similarity=0.477  Sum_probs=32.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+++++.+.+
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRA  207 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcC
Confidence            357999999999999999999999999999987654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.87  E-value=0.0079  Score=59.57  Aligned_cols=35  Identities=20%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~  189 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF  189 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCC
Confidence            57999999999999999999999999999987654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.87  E-value=0.00048  Score=73.81  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=33.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..+.+|||||||++|+++|..|++.+++|+|||+++.
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            3456899999999999999999999999999998753

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.85  E-value=0.0027  Score=66.69  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=32.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI  182 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeeccc
Confidence            47999999999999999999999999999987653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.83  E-value=0.0094  Score=65.18  Aligned_cols=32  Identities=28%  Similarity=0.380  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            37999999999999999999999999999986

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.83  E-value=0.0072  Score=60.21  Aligned_cols=34  Identities=18%  Similarity=0.391  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~  188 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK  188 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc
Confidence            4799999999999999999999999999998754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.82  E-value=0.0049  Score=64.87  Aligned_cols=35  Identities=17%  Similarity=0.424  Sum_probs=32.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+-+|..|++.|.+|+++|+.+.+
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV  183 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            47999999999999999999999999999987643

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.81  E-value=0.0012  Score=72.16  Aligned_cols=39  Identities=10%  Similarity=0.288  Sum_probs=35.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      .+++||+|||+|..|..+|..|++.|.+|++|||++...
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~g   44 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYG   44 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCccc
Confidence            347999999999999999999999999999999998753

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.78  E-value=0.00051  Score=74.57  Aligned_cols=36  Identities=31%  Similarity=0.352  Sum_probs=32.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~-~Gi~v~viEr~~~~   78 (572)
                      .+|+||||||++|+++|..|++ .|++|+|||+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4899999999999999999998 69999999998654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.77  E-value=0.0056  Score=61.49  Aligned_cols=34  Identities=12%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~  189 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence            5799999999999999999999999999998754

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.68  E-value=0.0072  Score=64.96  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+-+|..|++.|.+|+++++.+.+
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  390 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCccc
Confidence            47999999999999999999999999999987543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.55  E-value=0.0017  Score=70.24  Aligned_cols=54  Identities=15%  Similarity=0.126  Sum_probs=40.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHH
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFR   96 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~   96 (572)
                      .-+|+|||+|.+|+-+|..|++.|.+|+|++|.+.........-+.+...+.|+
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~  231 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIK  231 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHH
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHH
Confidence            357999999999999999999999999999999873211112335555566665

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.48  E-value=0.0037  Score=67.55  Aligned_cols=54  Identities=13%  Similarity=0.171  Sum_probs=40.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHH
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFR   96 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~   96 (572)
                      .-+|+|||+|++|+-+|..|++.+.+|+|++|.+.........-+.+...+.|+
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~  238 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLR  238 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHH
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHH
Confidence            347999999999999999999999999999999864211122334555556665

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.10  E-value=0.019  Score=63.92  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=31.4

Q ss_pred             CCEEEEC--CCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVG--AGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVG--aGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||  +|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l  560 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV  560 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccc
Confidence            3599999  9999999999999999999999987543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.08  E-value=0.028  Score=59.21  Aligned_cols=35  Identities=20%  Similarity=0.434  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--------------------CC-CEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--------------------GI-KCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--------------------Gi-~v~viEr~~~~   78 (572)
                      -+|+|||+|.+|+-+|..|++.                    |. +|+|++|+...
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            4799999999999999999974                    65 89999988643

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.07  E-value=0.042  Score=57.89  Aligned_cols=35  Identities=17%  Similarity=0.331  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHH--------------------hCCC-CEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLT--------------------KLGI-KCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La--------------------~~Gi-~v~viEr~~~~   78 (572)
                      -+|+|||+|.+|+=+|..|+                    +.|. +|+|++|+...
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            57999999999999999999                    6788 69999988643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.01  E-value=0.0049  Score=54.58  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=32.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..|+|+|+|..|..+|..|.+.|++|+++|+++..
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~   54 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYA   54 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            47999999999999999999999999999987653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.95  E-value=0.008  Score=52.24  Aligned_cols=35  Identities=31%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +-.|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999999754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.89  E-value=0.0066  Score=62.54  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=33.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL  182 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            589999999999999999999999999999988764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=95.65  E-value=0.021  Score=55.74  Aligned_cols=33  Identities=12%  Similarity=0.324  Sum_probs=29.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .-+|+|||+|++|+-+|..|++.| +|+++++.+
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence            357999999999999999999999 999987654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.60  E-value=0.014  Score=51.38  Aligned_cols=33  Identities=12%  Similarity=0.214  Sum_probs=30.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -.|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            479999999999999999999999999999874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.59  E-value=0.008  Score=51.67  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .+|+|||+|..|..+|..|.+.|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999854

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=95.52  E-value=0.0083  Score=64.86  Aligned_cols=54  Identities=11%  Similarity=0.154  Sum_probs=39.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHH
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFR   96 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~   96 (572)
                      .-+|+|||+|.+|+-+|..|++.|.+|+|++|.+.........-+.+...+.|+
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~  244 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQK  244 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHH
Confidence            347999999999999999999999999999998864111112335555566665

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.42  E-value=0.012  Score=50.94  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            379999999999999999999999999999864

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.08  E-value=0.016  Score=47.97  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~   76 (572)
                      ..|+|+|+|..|..++..|.+.| .+|++++|.+
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            46999999999999999999999 8999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.07  E-value=0.017  Score=57.17  Aligned_cols=35  Identities=17%  Similarity=0.408  Sum_probs=32.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||+.|+=+|..|++.|.+|+|+|+.+.+
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            37999999999999999999999999999998765

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=95.01  E-value=0.2  Score=52.24  Aligned_cols=55  Identities=15%  Similarity=0.090  Sum_probs=36.4

Q ss_pred             HHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCc-eeeEEEEecEEEeecCC
Q 008258          159 KLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGK-CTERNIQCNILIGTDGA  235 (572)
Q Consensus       159 ~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~-~~~~~i~ad~vVgADG~  235 (572)
                      +.+.+.+++.|+                   ++++++++++++.  ++++++.... +|. .+..++.+|+||-|-|.
T Consensus       212 ~~~~~~l~~~gI-------------------~~~~~~~v~~v~~--~~v~~~~~~~-~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          212 GILTKGLKEEGI-------------------EAYTNCKVTKVED--NKMYVTQVDE-KGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHHTTC-------------------EEECSEEEEEEET--TEEEEEEECT-TSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHHCCC-------------------EEEcCCEEEEEEC--CeEEEEeccc-CCccccceEEEEeEEEEcCCC
Confidence            445566777777                   8899999998864  4554443322 232 12457899999999873

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=94.98  E-value=0.058  Score=62.32  Aligned_cols=35  Identities=11%  Similarity=0.138  Sum_probs=31.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~  319 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSI  319 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSC
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCcc
Confidence            47999999999999999999999999999987643

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=94.93  E-value=0.12  Score=57.08  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=24.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEE
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCS   70 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~   70 (572)
                      -+|+|||||++|+-+|..|++.|.+|.
T Consensus       495 ~~VvVIGgG~~g~E~A~~l~~~G~~vt  521 (671)
T 1ps9_A          495 NKVAIIGCGGIGFDTAMYLSQPGESTS  521 (671)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CeEEEECCChhHHHHHHHHHhcCCCcc
Confidence            579999999999999999999987654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.89  E-value=0.022  Score=48.99  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=30.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .|+|+|+|..|..+|..|.+.|++|+++|+.+
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=94.88  E-value=0.1  Score=58.31  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=31.0

Q ss_pred             CCEEEEC--CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVG--AGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVG--aGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -+|+|||  ||.+|+-+|..|++.|.+|+|+++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            4799998  99999999999999999999999876

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=94.86  E-value=0.069  Score=56.17  Aligned_cols=35  Identities=14%  Similarity=0.199  Sum_probs=31.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~~   78 (572)
                      -+|+|||||.+|+=+|..+.+.|.+ |++++|++..
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            4799999999999999999999985 9999987643

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.71  E-value=0.025  Score=51.42  Aligned_cols=35  Identities=26%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~   77 (572)
                      ...|+|+|+|..|..+|..|.+. |++|+++|+++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            34799999999999999999999 999999998653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=94.67  E-value=0.23  Score=57.78  Aligned_cols=32  Identities=16%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      +|+|||||.+|+=+|..|++.|. +|+|+++++
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            79999999999999999999997 899999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.61  E-value=0.03  Score=56.34  Aligned_cols=37  Identities=16%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      ....+|.|||||-.|.++|..|++.|+ +|+++|+.++
T Consensus         7 ~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            7 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            334689999999999999999999998 9999998754

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.49  E-value=0.032  Score=55.20  Aligned_cols=33  Identities=15%  Similarity=0.370  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            599999999999999999999999999998754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.25  E-value=0.028  Score=52.70  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            699999999999999999999999999998754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.21  E-value=0.034  Score=54.85  Aligned_cols=35  Identities=31%  Similarity=0.549  Sum_probs=32.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            47999999999999999999999999999987654

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.29  E-value=0.07  Score=54.15  Aligned_cols=35  Identities=29%  Similarity=0.505  Sum_probs=31.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..+|.|||+|-.|.++|..|++.|.+|.+++|.+.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45899999999999999999999999999998643

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.21  E-value=0.11  Score=48.87  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ...|+|||||.+|...|..|.+.|.+|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            458999999999999999999999999999864

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.16  E-value=0.071  Score=53.20  Aligned_cols=32  Identities=31%  Similarity=0.614  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .+|+|||+|-.|.++|..|++.|.+|++++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            47999999999999999999999999999985

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=93.13  E-value=0.083  Score=52.71  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      ...+|.|||+|-+|.++|..|+..|+  +++++|....
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~   43 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   43 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChH
Confidence            34689999999999999999999998  8999998753

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=93.04  E-value=0.083  Score=52.57  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=31.6

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ...+|.|||+|..|.++|..|++.|+ +++++|+.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            34579999999999999999999999 999999863

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.88  E-value=0.077  Score=51.92  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|.|||+|.-|...|..|++.|++|+++|+.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.83  E-value=0.1  Score=52.40  Aligned_cols=32  Identities=38%  Similarity=0.470  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .+|+|||+|-.|.++|..|++.|.+|++++|.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            47999999999999999999999999999974

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=92.74  E-value=0.088  Score=54.02  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=32.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...|+|+|+|++|+.+|..|...|.+|+++|+++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            35799999999999999999999999999998865

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.63  E-value=0.093  Score=52.11  Aligned_cols=32  Identities=34%  Similarity=0.564  Sum_probs=29.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .+|+|||+|-.|.++|..|++.|.+|++++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence            47999999999999999999999999999985

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.62  E-value=0.095  Score=52.21  Aligned_cols=34  Identities=12%  Similarity=0.365  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      ..|.|||+|-.|.++|..|++.|+ +|+++|+.+.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            479999999999999999999998 9999998753

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=92.54  E-value=0.086  Score=52.47  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|.|||||.-|...|..+++.|++|+++|..+.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4799999999999999999999999999997653

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=92.49  E-value=0.089  Score=55.25  Aligned_cols=33  Identities=30%  Similarity=0.391  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|||.|.+|+++|..|+++|++|.+.|+++
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            479999999999999999999999999999875

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.48  E-value=0.074  Score=55.62  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=32.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..|+|||.|++|+++|..|+++|++|+++|.+...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            46999999999999999999999999999987654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=92.46  E-value=0.1  Score=55.15  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=33.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+++.+.+.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  223 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc
Confidence            3579999999999999999999999999999987653

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.46  E-value=0.042  Score=57.90  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +.|+|+|+|-.|..+|..|...|++|+|||+++.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4699999999999999999999999999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=92.45  E-value=0.085  Score=52.15  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=31.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..+|.|||+|-.|..+|..|++.|++|++++|.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.43  E-value=0.11  Score=50.65  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||+|..|.++|..|++.|++|.+++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            599999999999999999999999999998764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.33  E-value=0.1  Score=54.10  Aligned_cols=34  Identities=32%  Similarity=0.526  Sum_probs=31.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|+|||+|..|..+|..|.+.|++|++||+++.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4799999999999999999999999999999865

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=92.32  E-value=0.1  Score=51.71  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+|.|||.|-.|..+|..|++.|++|++++|.+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.31  E-value=0.095  Score=50.28  Aligned_cols=34  Identities=32%  Similarity=0.471  Sum_probs=31.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ...|+|||+|..|..+|..|++.|+ +++|+|+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3579999999999999999999998 799999875

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.28  E-value=0.13  Score=47.83  Aligned_cols=34  Identities=15%  Similarity=0.282  Sum_probs=31.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+|.|||+|-.|.++|..|++.|.+|.+++|.+.
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4699999999999999999999999999998865

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=92.17  E-value=0.11  Score=51.05  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=33.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|.|||.|-.|..+|..|++.|++|+++++.+..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            358999999999999999999999999999998754

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=92.16  E-value=0.11  Score=51.80  Aligned_cols=35  Identities=34%  Similarity=0.492  Sum_probs=30.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~   75 (572)
                      ....+|.|||+|..|.++|..|+..|+  +++++|..
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            334679999999999999999999997  89999975

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=92.11  E-value=0.09  Score=52.45  Aligned_cols=35  Identities=23%  Similarity=0.404  Sum_probs=31.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..+|.|||.|-.|..+|..|++.|++|++++|.+.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            35799999999999999999999999999998754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=91.90  E-value=0.14  Score=51.01  Aligned_cols=34  Identities=21%  Similarity=0.476  Sum_probs=30.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .+|.|||||-.|.++|..|+..|+ +|+++|..+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            479999999999999999999998 9999998743

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=91.88  E-value=0.13  Score=51.98  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .+|.|||+|-.|...|..|++.|++|.+++|.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999998764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=91.81  E-value=0.13  Score=51.10  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      .+|+|||+|-.|.++|..|++.|+  +|+++|+.+
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999998  999999864

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=91.79  E-value=0.15  Score=51.09  Aligned_cols=34  Identities=21%  Similarity=0.456  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .+|.|||||-.|.++|..|++.|+ +|+++|..++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            479999999999999999999999 9999998754

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=91.74  E-value=0.12  Score=50.91  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .+|+|||+|-.|.+.|..|++.|.+|.+++|.+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999999999999999874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.68  E-value=0.11  Score=52.96  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=32.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...|+|+|+|.+|+.+|..|...|.+|+++|+++.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998854

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=91.67  E-value=0.12  Score=54.35  Aligned_cols=35  Identities=23%  Similarity=0.092  Sum_probs=32.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+=+|..|++.|.+|+|+++++.+
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            47999999999999999999999999999987653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=91.60  E-value=0.12  Score=54.82  Aligned_cols=103  Identities=20%  Similarity=0.356  Sum_probs=78.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..                   .+.                    
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~d--------------------  238 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG-------------------GMD--------------------  238 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS-------------------SSC--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc-------------------cCC--------------------
Confidence            35799999999999999999999999999998765421                   000                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.+.+.+++.|+                   +++.++++++++.
T Consensus       239 --------------------------------~~~~~~l~~~l~~~gV-------------------~v~~~~~v~~i~~  267 (491)
T 3urh_A          239 --------------------------------GEVAKQLQRMLTKQGI-------------------DFKLGAKVTGAVK  267 (491)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHhCCC-------------------EEEECCeEEEEEE
Confidence                                            1223345566667776                   8999999999999


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +++++.+++...++|  ++.++.+|.||-|-|...
T Consensus       268 ~~~~~~v~~~~~~~g--~~~~i~~D~Vi~a~G~~p  300 (491)
T 3urh_A          268 SGDGAKVTFEPVKGG--EATTLDAEVVLIATGRKP  300 (491)
T ss_dssp             ETTEEEEEEEETTSC--CCEEEEESEEEECCCCEE
T ss_pred             eCCEEEEEEEecCCC--ceEEEEcCEEEEeeCCcc
Confidence            888888888743334  234789999999999653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=91.53  E-value=0.16  Score=53.10  Aligned_cols=35  Identities=20%  Similarity=0.033  Sum_probs=32.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~~   78 (572)
                      -+|+|||||++|+=+|..|++.|.+ |+|++|.+..
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            4799999999999999999999999 9999997654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.50  E-value=0.15  Score=50.33  Aligned_cols=32  Identities=28%  Similarity=0.499  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|.|||+|-.|..+|..|++.|++|++++|++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            69999999999999999999999999999864

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=91.49  E-value=0.14  Score=54.06  Aligned_cols=35  Identities=31%  Similarity=0.546  Sum_probs=32.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .++|.|||+|-.|+.+|..|++.|++|+++|+.+.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~   42 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQA   42 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            35799999999999999999999999999998753

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=91.48  E-value=0.2  Score=49.66  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+|.|||+|..|...|..|++.|++|.++++.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            5799999999999999999999999999998754

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.47  E-value=0.12  Score=54.13  Aligned_cols=34  Identities=26%  Similarity=0.564  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+|.|||+|-.|+.+|..|++.|++|+++|+.+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            4799999999999999999999999999998754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=91.43  E-value=0.065  Score=46.51  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|+|||+|..|..+|..|++.|++|.+++|.+.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~   55 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNID   55 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            4799999999999999999999999999998743

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.38  E-value=0.16  Score=52.15  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=31.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...|+|+|+|++|+.+|..+...|.+|+++|+++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=91.28  E-value=0.1  Score=50.66  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=30.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ...|+|||||.+|+..|..|.+.|.+|+|++...
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            3579999999999999999999999999998643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=91.27  E-value=0.2  Score=46.74  Aligned_cols=33  Identities=30%  Similarity=0.319  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|.|||+|-.|...|..|++.|++|.+++|++
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=91.24  E-value=0.17  Score=52.86  Aligned_cols=36  Identities=25%  Similarity=0.457  Sum_probs=33.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+.+.|||.|-.|+.+|..|++.|++|+++|+++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            478999999999999999999999999999998764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=91.23  E-value=0.11  Score=51.36  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=29.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC-----C-CCEEEEcC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL-----G-IKCSVLEK   74 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~-----G-i~v~viEr   74 (572)
                      .+|.|||+|..|.++|..|++.     | .+|++++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4799999999999999999999     9 99999987

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=91.14  E-value=2.6  Score=44.09  Aligned_cols=44  Identities=20%  Similarity=0.300  Sum_probs=35.4

Q ss_pred             ceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258          189 REILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (572)
Q Consensus       189 ~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~  236 (572)
                      .+|+++++|++|+.++++|+|++.   +|. ...+++||.||.|-..+
T Consensus       252 ~~i~~~~~V~~i~~~~~~v~v~~~---~g~-~~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          252 DNIVFGAEVTSMKNVSEGVTVEYT---AGG-SKKSITADYAICTIPPH  295 (489)
T ss_dssp             GGEETTCEEEEEEEETTEEEEEEE---ETT-EEEEEEESEEEECSCHH
T ss_pred             CeEEECCEEEEEEEcCCeEEEEEe---cCC-eEEEEECCEEEECCCHH
Confidence            379999999999999999888776   332 23478999999999764

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=91.01  E-value=0.2  Score=50.00  Aligned_cols=34  Identities=15%  Similarity=0.295  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .+|.|||||..|.++|..|+..|+ +++++|..+.
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            579999999999999999999999 9999998764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.00  E-value=0.17  Score=52.16  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|+|+|+|.+|+.+|..+...|.+|+++|+++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4799999999999999999999999999998754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.84  E-value=0.17  Score=51.46  Aligned_cols=33  Identities=27%  Similarity=0.439  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -.|+|+|+|.+|+.++..|+..|.+|+++++.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=90.80  E-value=0.19  Score=49.70  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      +|+|||||-.|.++|..|++.|+  +|+++|+.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            59999999999999999999998  899999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=90.61  E-value=0.2  Score=52.76  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=32.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~-Gi-~v~viEr~~~   77 (572)
                      .+|.|||+|-.|+.+|..|++. |+ +|+++|+.+.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4799999999999999999999 99 9999999876

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=90.37  E-value=0.25  Score=47.51  Aligned_cols=33  Identities=24%  Similarity=0.555  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      ..|.|||+|-.|...|..|++.|++ |.++++.+
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            5799999999999999999999999 88998754

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=90.35  E-value=0.077  Score=50.18  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=29.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      ..+|.|||+|..|.++|..|++.|++|+++++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~   37 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHA   37 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSS
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecC
Confidence            35799999999999999999999999999988

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=90.35  E-value=0.26  Score=49.15  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=31.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .+|.|||+|..|.++|..|++.|+ ++.++|..+.
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            479999999999999999999988 9999998754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=90.30  E-value=0.29  Score=48.30  Aligned_cols=35  Identities=20%  Similarity=0.482  Sum_probs=31.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..+|.|||.|-.|..+|..|++.|++|++++|.+.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998753

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=90.21  E-value=0.26  Score=49.52  Aligned_cols=33  Identities=24%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|.|||.|.-|.++|..|++.|++|.++++.+
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=90.14  E-value=0.25  Score=49.02  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=29.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~   77 (572)
                      +|.|||+|-.|.++|..|++.  |.+|+++|+.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            599999999999999999985  789999999754

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=90.00  E-value=0.16  Score=47.53  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=30.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEE-EcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSV-LEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~v-iEr~~~   77 (572)
                      .+|.|||+|-.|.++|..|++.|++|++ ++|.++
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            4799999999999999999999999998 887654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=89.91  E-value=0.25  Score=48.90  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=29.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .+|+|||+|-.|.+.|..|+ .|.+|.+++|.+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            47999999999999999999 999999999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=89.88  E-value=0.31  Score=51.51  Aligned_cols=34  Identities=15%  Similarity=0.319  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|.|||+|.-|...|..|++.|++|+++|+.++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            4799999999999999999999999999998754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=89.86  E-value=0.28  Score=48.64  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      .+|.|||||-.|..+|..|+..|+ +++++|..+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            469999999999999999999997 999999864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=89.86  E-value=0.21  Score=49.74  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=29.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .+|+|||+|-.|.++|..|++.|.+|+++ +++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            47999999999999999999999999999 653

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=89.83  E-value=0.17  Score=52.73  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||+|-.|+.+|..|++.|++|+++|+.+.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~   34 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            599999999999999999999999999998653

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=89.75  E-value=0.12  Score=48.75  Aligned_cols=34  Identities=18%  Similarity=0.069  Sum_probs=30.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +..|+|+|+|..|..+|..|.+.|+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3469999999999999999999999 999998764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=89.69  E-value=0.31  Score=48.35  Aligned_cols=33  Identities=12%  Similarity=0.224  Sum_probs=30.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      .+|.|||.|-.|..+|..|++.|+ +|+++++.+
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            479999999999999999999999 999999874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=89.68  E-value=0.23  Score=50.36  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=32.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...+|.|||.|-.|..+|..|++.|++|++++|.+.
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            345799999999999999999999999999998753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=89.67  E-value=0.24  Score=49.45  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHH-HHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLV-LSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~-~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|.|||.|.+|++ +|..|+++|++|.+.|+++.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            36999999999996 89999999999999998764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=89.64  E-value=0.23  Score=48.66  Aligned_cols=33  Identities=30%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .+|.|||+|..|...|..|++.|++|.++++.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=89.64  E-value=0.25  Score=48.27  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||+|-.|..+|..|++.|++|++++|.+.
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998765

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=89.55  E-value=0.22  Score=51.61  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+|.|||+|-.|+.+|..|++ |++|+++|+.+.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            479999999999999999999 999999998754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=89.48  E-value=0.33  Score=48.34  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=31.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~G----i~v~viEr~~~   77 (572)
                      ..+|.|||+|-.|.++|..|++.|    .+|.+++|.+.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            357999999999999999999999    79999998754

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.37  E-value=0.29  Score=48.55  Aligned_cols=33  Identities=33%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      ..|.|||+|..|.++|..|++.|+  +|.++++.+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            479999999999999999999999  899999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=89.35  E-value=0.29  Score=48.96  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=31.4

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ++.+|.|||+|-.|.++|..|++.|.+|.+++|.+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            34689999999999999999999999999999863

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=89.31  E-value=0.28  Score=50.94  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|.|||.|-+||.+|..|++.|++|+.+|.++.
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~   55 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPS   55 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            4799999999999999999999999999998754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=89.25  E-value=0.3  Score=51.03  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|.|||+|.-|...|..|++.|++|+++|+.++
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            3699999999999999999999999999999865

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=89.20  E-value=0.29  Score=49.78  Aligned_cols=33  Identities=27%  Similarity=0.535  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|+|+|..|+.+|..|+..|.+|+++++++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999998764

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=89.15  E-value=0.44  Score=48.57  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=31.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...|+|+|+|..|..++.++++.|++|++++..+.
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            34699999999999999999999999999997654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=89.12  E-value=0.23  Score=48.85  Aligned_cols=32  Identities=19%  Similarity=0.134  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      +|.|||+|..|.++|..|++.|+  ++.++|+.+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            59999999999999999999998  899999864

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.02  E-value=0.31  Score=47.77  Aligned_cols=35  Identities=40%  Similarity=0.572  Sum_probs=31.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ....|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            45689999999999999999999998 588999765

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=88.94  E-value=0.27  Score=46.80  Aligned_cols=35  Identities=20%  Similarity=0.412  Sum_probs=32.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...|.|||+|-.|.++|..|++.|++|++++|.+.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            35799999999999999999999999999998764

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=88.91  E-value=0.37  Score=50.65  Aligned_cols=33  Identities=24%  Similarity=0.491  Sum_probs=30.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus        39 kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            699999999999999999999999999998753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=88.90  E-value=0.32  Score=51.38  Aligned_cols=99  Identities=22%  Similarity=0.445  Sum_probs=75.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                .+   .                    
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~----------------~~---~--------------------  231 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR----------------NF---D--------------------  231 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST----------------TS---C--------------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc----------------cc---C--------------------
Confidence            45899999999999999999999999999998765310                00   0                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.|.+.+++.|+                   ++++++++++++.
T Consensus       232 --------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~V~~i~~  260 (484)
T 3o0h_A          232 --------------------------------YDLRQLLNDAMVAKGI-------------------SIIYEATVSQVQS  260 (484)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHTC-------------------EEESSCCEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEe
Confidence                                            1223345666677776                   8899999999998


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                      +++++.+++.   +|+    ++.+|.||.|.|..+.
T Consensus       261 ~~~~v~v~~~---~g~----~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          261 TENCYNVVLT---NGQ----TICADRVMLATGRVPN  289 (484)
T ss_dssp             CSSSEEEEET---TSC----EEEESEEEECCCEEEC
T ss_pred             eCCEEEEEEC---CCc----EEEcCEEEEeeCCCcC
Confidence            8888766654   553    6899999999997543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=88.85  E-value=0.52  Score=46.31  Aligned_cols=33  Identities=27%  Similarity=0.472  Sum_probs=30.6

Q ss_pred             CEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVG-aGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.||| +|-.|.++|..|++.|++|.++++.+.
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            699999 999999999999999999999997653

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=88.77  E-value=11  Score=39.34  Aligned_cols=47  Identities=11%  Similarity=0.115  Sum_probs=34.1

Q ss_pred             ceEEeccEEEEEeeeCCe------EEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          189 REILMGHECVSVSATDQC------INVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       189 ~~i~~g~~v~~v~~~~~~------v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      .+|+++++|++|+.++++      +.|++.. ++|+ ..++++||.||.|-....
T Consensus       256 ~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~-~~g~-~~~~~~ad~VI~a~p~~~  308 (504)
T 1sez_A          256 DELRLNSRVLELSCSCTEDSAIDSWSIISAS-PHKR-QSEEESFDAVIMTAPLCD  308 (504)
T ss_dssp             TTEETTCCEEEEEEECSSSSSSCEEEEEEBC-SSSS-CBCCCEESEEEECSCHHH
T ss_pred             ceEEcCCeEEEEEecCCCCcccceEEEEEcC-CCCc-cceeEECCEEEECCCHHH
Confidence            489999999999988877      7777652 1231 002578999999998754

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=88.75  E-value=0.38  Score=46.53  Aligned_cols=34  Identities=35%  Similarity=0.495  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|+|+|+|-+|.++|..|++.|.+|.|+.|..+
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999988999998764

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=88.75  E-value=1.2  Score=45.65  Aligned_cols=36  Identities=22%  Similarity=0.143  Sum_probs=28.2

Q ss_pred             CcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHh
Q 008258          359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL  397 (572)
Q Consensus       359 grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~  397 (572)
                      .+|+.+||+++.-.|..   ...|..++..+|..|...+
T Consensus       300 ~~vfa~GD~~~~~~~~~---~~~A~~q~~~aa~~i~~~l  335 (409)
T 3h8l_A          300 DNVYAVGDANSMTVPKL---GYLAVMTGRIAAQHLANRL  335 (409)
T ss_dssp             TTEEECGGGBTTCCSCC---HHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEeehhccCCCCcH---HHHHHHHHHHHHHHHHHHh
Confidence            69999999998633433   3468889999999988876

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=88.68  E-value=0.48  Score=47.19  Aligned_cols=33  Identities=15%  Similarity=0.312  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      .+|.|||+|..|.++|..|+..|+  +++++|...
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            579999999999999999999998  899999853

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=88.65  E-value=0.28  Score=47.84  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||.|-.|..+|..|++.|++|++++|.+.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998765

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=88.57  E-value=0.34  Score=48.06  Aligned_cols=33  Identities=18%  Similarity=0.431  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      +|.|||+|..|.++|..|++.|+  +++++|..+.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            59999999999999999999997  8999998764

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=88.57  E-value=0.41  Score=45.79  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=31.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G----i~v~viEr~~~~   78 (572)
                      .+|.|||+|-.|.+.|..|++.|    .+|.+++|.+..
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~   43 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN   43 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc
Confidence            47999999999999999999999    689999987654

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=88.56  E-value=0.48  Score=45.85  Aligned_cols=35  Identities=31%  Similarity=0.434  Sum_probs=31.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..|+|.|+|-.|..++..|.+.|++|+++.|.+..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            36999999999999999999999999999987653

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=88.53  E-value=0.34  Score=51.14  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +++.+|.|||+|.-|..+|..|++.|++|.+++|.+.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~   49 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSRE   49 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3456899999999999999999999999999998753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=88.48  E-value=0.35  Score=49.36  Aligned_cols=33  Identities=27%  Similarity=0.500  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|+|+|..|+.+|..++..|.+|+++|+.+
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999763

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=88.48  E-value=0.35  Score=48.17  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=30.3

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~   75 (572)
                      ....|+|||+|..|.++|..|+..|+  ++.++|..
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            34579999999999999999999988  79999974

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=88.47  E-value=0.31  Score=48.55  Aligned_cols=30  Identities=33%  Similarity=0.463  Sum_probs=28.8

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      +|.|||+|-.|.++|..|++.|++|++++|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            589999999999999999999999999998

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=88.46  E-value=0.32  Score=49.40  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=31.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~   75 (572)
                      -.+.+|+|+|||-+|..+|..|...|. +|.++|++
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            345789999999999999999999999 89999986

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=88.40  E-value=0.47  Score=48.50  Aligned_cols=34  Identities=26%  Similarity=0.549  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|+|+|+|..|..+|.++.+.|++|++++..+.
T Consensus        15 k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           15 KTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            4799999999999999999999999999997654

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=88.37  E-value=0.35  Score=46.33  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=30.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4589999999999999999999998 588998764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=88.33  E-value=0.36  Score=47.97  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=29.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~   75 (572)
                      ..+|+|||||-+|.++|..|+..|+  ++.++|..
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3589999999999999999999885  79999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=88.25  E-value=0.22  Score=49.50  Aligned_cols=34  Identities=9%  Similarity=0.085  Sum_probs=31.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~   77 (572)
                      .+|.|||.|-.|..+|..|++.| ++|+++++.+.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~   59 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFN   59 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            46999999999999999999999 99999999864

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=88.25  E-value=0.33  Score=50.89  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -.|+|+|+|..|..+|..|+..|.+|+++|+.+
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            469999999999999999999999999998753

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=88.19  E-value=0.42  Score=46.28  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|+|+|.+|.++|..|++.|.+|+|++|..
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            369999999999999999999999999998764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=88.02  E-value=0.44  Score=51.44  Aligned_cols=36  Identities=14%  Similarity=0.372  Sum_probs=33.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      -.|+|||+|..|..+|..|.+.|++|+++|+++...
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~  384 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPV  384 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHH
Confidence            579999999999999999999999999999998753

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=87.98  E-value=0.3  Score=47.89  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .+|.|||+|-.|...|..|++.|++|.++++.+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            579999999999999999999999999998764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=87.92  E-value=0.36  Score=50.92  Aligned_cols=101  Identities=21%  Similarity=0.249  Sum_probs=73.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+|+|||||+.|+-+|..|++.|.+|+++++....                    +.+.                    
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l--------------------~~~d--------------------  226 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVL--------------------RGFD--------------------  226 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSS--------------------TTSC--------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC--------------------cccC--------------------
Confidence            347999999999999999999999999999874211                    0100                    


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                      ..+.+.+.+.+++.|+                   ++++++++++++.
T Consensus       227 --------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~i~~  255 (483)
T 3dgh_A          227 --------------------------------QQMAELVAASMEERGI-------------------PFLRKTVPLSVEK  255 (483)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTC-------------------CEEETEEEEEEEE
T ss_pred             --------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEE
Confidence                                            1223345566677776                   8999999999987


Q ss_pred             eCC-eEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258          203 TDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAG  236 (572)
Q Consensus       203 ~~~-~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~  236 (572)
                      +++ .+.+++...++  ++..++.+|.||-|-|..
T Consensus       256 ~~~~~~~v~~~~~~~--~~~~~~~~D~vi~a~G~~  288 (483)
T 3dgh_A          256 QDDGKLLVKYKNVET--GEESEDVYDTVLWAIGRK  288 (483)
T ss_dssp             CTTSCEEEEEEETTT--CCEEEEEESEEEECSCEE
T ss_pred             cCCCcEEEEEecCCC--CceeEEEcCEEEECcccc
Confidence            654 46677663222  234578999999999964

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=87.84  E-value=0.41  Score=47.57  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=30.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~   75 (572)
                      .+.+|.|||||-+|.++|..|+..++  +++++|..
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            34689999999999999999999886  79999974

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=87.83  E-value=0.36  Score=47.37  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=31.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+..|.|||+|.-|...|..|+ .|++|+++|+.++
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~   45 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEK   45 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHH
Confidence            3468999999999999999999 9999999998653

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=87.78  E-value=0.39  Score=46.68  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=32.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~   78 (572)
                      ...|+|+|+|-+|.++|..|++.|. +|.|+.|....
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~  153 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMSR  153 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence            3579999999999999999999999 89999988643

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=87.78  E-value=0.51  Score=48.13  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      ...++|+|||..|.++|..++..|++|+|+|.++...
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~  240 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA  240 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc
Confidence            4589999999999999999999999999999887753

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=87.71  E-value=0.45  Score=46.78  Aligned_cols=33  Identities=15%  Similarity=0.227  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ..|+|+|+|.+|.++|..|++.|. +|+|+.|..
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            469999999999999999999998 899998874

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=87.65  E-value=0.38  Score=47.83  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      +|.|||+|-.|.++|..|++.|+  +|+++|+.+
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999999999  999999864

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.54  E-value=0.47  Score=45.93  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .|.|||+|-.|.++|..|++.|++|.++++.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999998764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.51  E-value=0.4  Score=46.38  Aligned_cols=33  Identities=27%  Similarity=0.234  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|.|||-.|..++..|.+.|++|+++.|.+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            369999999999999999999999999998864

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=87.50  E-value=0.47  Score=47.09  Aligned_cols=33  Identities=30%  Similarity=0.538  Sum_probs=29.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      .+|.|||+|..|.++|+.|+..|+  +++++|..+
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            579999999999999999998886  799999763

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=87.48  E-value=0.38  Score=49.57  Aligned_cols=32  Identities=25%  Similarity=0.475  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||+|-.|+.+|..|++ |++|+++++.+.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~   33 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPS   33 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHH
Confidence            59999999999999999999 999999998753

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=87.39  E-value=0.48  Score=47.84  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=31.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .|+|+|||..|..+|.++++.|++|+++|.++..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~   36 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQA   36 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            5999999999999999999999999999987754

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=87.31  E-value=0.46  Score=43.84  Aligned_cols=32  Identities=28%  Similarity=0.450  Sum_probs=29.6

Q ss_pred             CEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVG-aGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|+||| +|-.|..+|..|++.|++|.+++|.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999 99999999999999999999999864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=87.21  E-value=0.38  Score=50.60  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~   77 (572)
                      .+|.|||+|-.|+.+|..|++.  |++|+++|+.+.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~   41 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES   41 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            3699999999999999999999  899999998754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=87.19  E-value=0.57  Score=45.57  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.3

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|.|||+ |-.|..+|..|++.|++|++++|.+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            36999999 9999999999999999999999764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=87.18  E-value=0.53  Score=45.95  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||+|-.|...|..|++.|++|.+++|.+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            599999999999999999999999999998643

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=87.17  E-value=0.42  Score=48.42  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=31.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKN   75 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~   75 (572)
                      -.+..|+|+|||-+|..+|..|...|. +|.++||.
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            345789999999999999999999999 79999986

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=87.10  E-value=0.58  Score=46.72  Aligned_cols=35  Identities=26%  Similarity=0.498  Sum_probs=31.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~   77 (572)
                      ...|+|||+|-.|..+|..|++.|+. ++|+|...-
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            46899999999999999999999985 888998753

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=87.08  E-value=0.36  Score=48.89  Aligned_cols=32  Identities=25%  Similarity=0.461  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|.|||+|-.|.++|..|++.|++|.+++|.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=87.00  E-value=0.44  Score=47.37  Aligned_cols=32  Identities=16%  Similarity=0.363  Sum_probs=29.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -+|+|||+|++|+-+|..|++.| +|+++++.+
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            57999999999999999999999 799999874

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=87.00  E-value=0.63  Score=49.01  Aligned_cols=34  Identities=12%  Similarity=0.307  Sum_probs=31.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+|.|||.|--|..+|..|++.|++|++++|.+.
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999999999998764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=86.92  E-value=0.45  Score=48.98  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|||.|+.|..+|..|...|.+|+++|+.+
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            479999999999999999999999999999764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=86.90  E-value=0.6  Score=46.66  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=31.0

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|.|| |-.|..++..|.+.|++|.++.|.+
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            47999999 9999999999999999999999976

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=86.86  E-value=0.3  Score=49.12  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G-------i~v~viEr~~~   77 (572)
                      .+|.|||+|-.|.++|..|++.|       .+|.+++|.+.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            36999999999999999999999       89999998765

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=86.79  E-value=0.54  Score=45.65  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .|.|||+|..|...|..|++ |++|.++++.+
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            69999999999999999999 99999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=86.72  E-value=0.45  Score=50.18  Aligned_cols=33  Identities=33%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -.|+|||+|+.|..+|..|+..|.+|+++|+.+
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=86.60  E-value=0.72  Score=44.86  Aligned_cols=34  Identities=15%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI---KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi---~v~viEr~~~   77 (572)
                      ..|.|||+|--|.+.|..|.+.|+   +|.+++|++.
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            579999999999999999999999   8999998754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=86.55  E-value=0.48  Score=48.16  Aligned_cols=33  Identities=12%  Similarity=0.191  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G-------i~v~viEr~~~   77 (572)
                      +|.|||+|-.|.++|..|++.|       .+|++++|.+.
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            6999999999999999999999       99999998765

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=86.53  E-value=0.69  Score=49.01  Aligned_cols=35  Identities=11%  Similarity=0.222  Sum_probs=32.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...|.|||+|.-|..+|..|++.|++|.+++|.+.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=86.42  E-value=0.61  Score=47.40  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      -.|+|+|+|+.|++++..++..|. +|+++++.+.
T Consensus       195 ~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~  229 (378)
T 3uko_A          195 SNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSK  229 (378)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            479999999999999998888899 7999987654

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=86.42  E-value=0.67  Score=48.91  Aligned_cols=34  Identities=12%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+|.|||+|-.|..+|..|++.|++|.+++|.+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~   36 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998753

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=86.40  E-value=0.79  Score=45.91  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=31.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|.|||+|-.|.+.|..|++.|++|+++++.+.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            3699999999999999999999999999998753

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=86.36  E-value=0.49  Score=49.63  Aligned_cols=33  Identities=30%  Similarity=0.289  Sum_probs=30.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      ...|+|||||.+|...|..|.+.|.+|+|++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            357999999999999999999999999999964

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=86.33  E-value=0.59  Score=42.98  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .|+|.|| |-.|..++..|.+.|++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            4999996 9999999999999999999999875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=86.18  E-value=0.52  Score=44.18  Aligned_cols=34  Identities=32%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|+|.|| |-.|..++..|.+.|++|+++.|.+.
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            46999998 99999999999999999999998754

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=86.03  E-value=4.8  Score=42.46  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      .+|+|||+|-+|.-.+..|++.  +.+|.++=|.+..
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSC
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            3699999999999999999875  7889999988754

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=86.03  E-value=0.73  Score=44.10  Aligned_cols=33  Identities=27%  Similarity=0.505  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .|+|+|+|-+|.+++..|.+.|. ++.|++|.+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~  143 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIE  143 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            79999999999999999999999 8999998753

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=86.02  E-value=0.66  Score=46.56  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|+|+.|++++..++..|.+|+++++.+.
T Consensus       178 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~  211 (348)
T 3two_A          178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEH  211 (348)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSST
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4699999999999999999889999999987654

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=85.89  E-value=0.56  Score=44.86  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~   76 (572)
                      .|.|||+|-.|...|..|++.| .+|.+++|.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            5899999999999999999999 9999998764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=85.88  E-value=0.62  Score=45.14  Aligned_cols=32  Identities=34%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      .|.|||+|..|.++|..|++.|+  +|+++++.+
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            59999999999999999999998  899998763

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=85.85  E-value=0.75  Score=45.01  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=31.6

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ..|+|.|| |-.|..++..|.+.|++|+++.|.+.
T Consensus         8 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            8 HRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            46999999 99999999999999999999999765

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=85.79  E-value=0.72  Score=45.58  Aligned_cols=32  Identities=25%  Similarity=0.507  Sum_probs=29.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      +|.|||||-+|.++|..|+..|+ +++++|...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            48999999999999999999898 599999864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=85.63  E-value=0.56  Score=46.32  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=29.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~   76 (572)
                      +|.|||+|-.|.++|..|++.|  .+|+++|+.+
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999999  6899999863

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=85.52  E-value=0.59  Score=46.08  Aligned_cols=34  Identities=21%  Similarity=0.522  Sum_probs=29.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      .+|.|||||-.|..+|..|+..|+  +++++|..+.
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            479999999999999999999998  8999998754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=85.50  E-value=0.73  Score=43.74  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC----CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI----KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi----~v~viEr~~~   77 (572)
                      .+|.|||+|-.|.+.|..|.+.|+    +|.+++|++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            469999999999999999999998    9999998643

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=85.44  E-value=0.89  Score=47.00  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=31.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...|+|+|+|..|..++.++++.|++|++++..+.
T Consensus        35 ~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           35 GAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            34799999999999999999999999999986543

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=85.42  E-value=0.77  Score=45.97  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLG-IKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~G-i~v~viEr~~~   77 (572)
                      ..|+|.|| |..|..++..|.+.| .+|+++.|.+.
T Consensus        47 ~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   82 (357)
T 2x6t_A           47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD   82 (357)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            46999999 999999999999999 99999988654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=85.41  E-value=0.77  Score=45.81  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=29.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~   75 (572)
                      ..+|.|||+|-.|.++|..|+..|+  +++++|..
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            3579999999999999999999987  79999975

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=85.38  E-value=0.51  Score=47.14  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             cCCEEEECC-CHHHHHHHHHHHhCCC-------CEEEEcCC
Q 008258           43 VVPVLIVGA-GPVGLVLSILLTKLGI-------KCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGa-GpaGL~~A~~La~~Gi-------~v~viEr~   75 (572)
                      ..+|+|+|| |-+|.+++..|...|+       ++.++|..
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            357999998 9999999999999886       79999876

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=85.35  E-value=0.59  Score=45.32  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|||+|-+|.++|..|.+.|.+|.+++|.+
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            469999999999999999999999999999874

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=85.35  E-value=0.68  Score=45.33  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|||+|..|..+|..|+..|.+|+++++.+
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999864

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=85.31  E-value=0.75  Score=44.83  Aligned_cols=33  Identities=33%  Similarity=0.458  Sum_probs=29.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ..|+|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            469999999999999999999999 599998874

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=85.17  E-value=0.61  Score=51.87  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||+|.-|...|..|++.|++|+++|+.++
T Consensus       314 kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             EEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            699999999999999999999999999998764

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=85.16  E-value=0.47  Score=48.80  Aligned_cols=30  Identities=30%  Similarity=0.330  Sum_probs=27.9

Q ss_pred             CEEEECCCHHHHHHHHHHHh-CCCCEEEEcC
Q 008258           45 PVLIVGAGPVGLVLSILLTK-LGIKCSVLEK   74 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~-~Gi~v~viEr   74 (572)
                      +|.|||+|-.|.++|..|++ .|.+|+++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~~   34 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLTL   34 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEECC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            69999999999999999998 4999999984

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=85.15  E-value=0.74  Score=41.71  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=31.5

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..|+|.|| |-.|..++..|.+.|.+|+++.|.+..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~   39 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhh
Confidence            36999999 999999999999999999999987653

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=85.09  E-value=0.56  Score=49.51  Aligned_cols=34  Identities=32%  Similarity=0.412  Sum_probs=30.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~   77 (572)
                      .+|.|||+|-.|+.+|..|++.  |++|+++|+++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~   45 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA   45 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            3799999999999999999998  799999998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=85.05  E-value=0.72  Score=42.58  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .|+|.|| |-.|..++..|.+.|++|+++.|.+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4999998 9999999999999999999999864

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=85.03  E-value=0.84  Score=44.86  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=30.4

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|+|+|| |-.|..++..|.+.|++|+++.|.+.
T Consensus        13 ~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             eEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            6999997 99999999999999999999998764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=84.90  E-value=0.75  Score=45.55  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=30.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      -.|+|+|+|-+|.++|..|++.|. +|.|+.|.+
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            469999999999999999999999 799999873

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=84.87  E-value=0.91  Score=47.77  Aligned_cols=34  Identities=15%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+|.|||+|-.|..+|..|++.|++|.+++|.+.
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~   39 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTS   39 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            5799999999999999999999999999998643

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=84.86  E-value=0.91  Score=43.41  Aligned_cols=33  Identities=18%  Similarity=0.200  Sum_probs=29.4

Q ss_pred             CCEEEECC-C-HHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGA-G-PVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGa-G-paGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -.|+|.|| | -.|..+|..|++.|.+|++++|+.
T Consensus        23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            35899999 7 599999999999999999998864

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=84.76  E-value=0.94  Score=43.48  Aligned_cols=32  Identities=28%  Similarity=0.576  Sum_probs=30.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .|+|||+|-.|.+.|..|.+.|.+|.+++|.+
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999864

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=84.75  E-value=0.75  Score=49.43  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=30.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ...|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            4689999999999999999999998 588999875

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=84.71  E-value=0.94  Score=45.44  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      .+|+|||+ |-+|.++|..|...|+  +++++|...
T Consensus         9 ~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            47999998 9999999999999985  799999753

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=84.71  E-value=0.87  Score=48.00  Aligned_cols=32  Identities=28%  Similarity=0.485  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|.|||+|-.|..+|..|++.|++|.+++|.+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=84.68  E-value=0.68  Score=46.71  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|||+.|++++..++..|.+|+++++.+.
T Consensus       181 ~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~  214 (360)
T 1piw_A          181 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR  214 (360)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4699999999999999988888999999987654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=84.63  E-value=0.76  Score=45.12  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|||+|..|..+|..|...|.+|+++++.+
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999999999999999999999999864

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=84.62  E-value=0.68  Score=47.64  Aligned_cols=33  Identities=30%  Similarity=0.465  Sum_probs=29.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ..|+|||+|..|..+|..|+..|. +|++++|.+
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            469999999999999999999999 899998753

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=84.59  E-value=0.72  Score=46.50  Aligned_cols=34  Identities=26%  Similarity=0.572  Sum_probs=30.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ...|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            4689999999999999999999998 588999764

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=84.59  E-value=0.79  Score=45.66  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=29.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~   75 (572)
                      +.+|.|||||-+|.++|+.|+..++  +++++|..
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            3689999999999999999998886  78999974

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=84.59  E-value=0.73  Score=47.39  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=30.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ...|+|+|+|..|..++.++.+.|++|++++ .+
T Consensus        24 ~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~   56 (403)
T 3k5i_A           24 SRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD   56 (403)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence            4579999999999999999999999999999 54

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=84.57  E-value=0.57  Score=45.38  Aligned_cols=33  Identities=21%  Similarity=0.190  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|+|+|-+|.++|..|++.|.+|+|+.|..
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            369999999999999999999999999998874

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=84.41  E-value=0.92  Score=46.15  Aligned_cols=35  Identities=20%  Similarity=0.494  Sum_probs=31.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ...|+|+|+|..|...+.++++.|++|.+++..+.
T Consensus        11 ~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~   45 (391)
T 1kjq_A           11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (391)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence            35799999999999999999999999999987654

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=84.13  E-value=0.76  Score=46.19  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=30.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ...|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~   70 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ   70 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            4689999999999999999999999 688998654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=84.11  E-value=0.89  Score=44.23  Aligned_cols=34  Identities=26%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|+|.|| |-.|..++..|.++|++|+++-|++..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            5999999 999999999999999999999887543

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=84.08  E-value=0.57  Score=48.56  Aligned_cols=34  Identities=29%  Similarity=0.492  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .+..|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4678999999999999999999999999999865

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=84.06  E-value=0.74  Score=44.92  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|+|+|-+|.++|..|++.| +|+|++|..
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            36999999999999999999999 999998753

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=83.91  E-value=1.1  Score=43.69  Aligned_cols=33  Identities=9%  Similarity=0.154  Sum_probs=28.9

Q ss_pred             CCEEEECCC---HHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAG---PVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaG---paGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      --|+|.||+   -.|..+|..|++.|.+|++++|..
T Consensus        31 k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           31 KKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            358899986   789999999999999999998863

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=83.89  E-value=0.69  Score=42.87  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=31.5

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..|+|.|| |-.|..++..|.+.|++|+++.|.+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   40 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK   40 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCccc
Confidence            36999996 999999999999999999999998654

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=83.86  E-value=0.92  Score=43.89  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ..|+|+|+|-+|-+++..|++.|+ ++.|+.|..
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~  153 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV  153 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            479999999999999999999998 799998864

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=83.78  E-value=1  Score=43.66  Aligned_cols=33  Identities=18%  Similarity=0.220  Sum_probs=29.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ..|+|+|+|-+|.++|..|++.|+ +|+|+.|..
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            469999999999999999999997 899998864

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=83.68  E-value=0.71  Score=44.95  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=30.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ..|+|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            479999999999999999999999 799998865

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=83.65  E-value=0.76  Score=46.58  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=29.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|+|+.|++++..++..|.+|+++++.+.
T Consensus       196 ~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~  229 (369)
T 1uuf_A          196 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA  229 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3699999999999999988889999998987543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=83.55  E-value=0.82  Score=46.06  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=29.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|+|+.|++++..++..|.+|+++++.+.
T Consensus       182 ~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~  215 (357)
T 2cf5_A          182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNK  215 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence            4699999999999999988888999999987643

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=83.52  E-value=0.79  Score=46.38  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|+|+.|++++..++..|.+|+++++.+.
T Consensus       189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~  222 (366)
T 1yqd_A          189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPS  222 (366)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4699999999999999999999999999987643

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=83.48  E-value=0.87  Score=45.02  Aligned_cols=33  Identities=15%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ..|+|+|+|-+|.++|..|++.|. +|.|+.|.+
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            479999999999999999999999 699998873

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=83.38  E-value=1.1  Score=44.83  Aligned_cols=33  Identities=36%  Similarity=0.484  Sum_probs=29.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      -.|+|+|||+.|++++..++..|. +|+++++.+
T Consensus       169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~  202 (348)
T 2d8a_A          169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSD  202 (348)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            469999999999999999999999 899998753

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=83.32  E-value=1.2  Score=44.20  Aligned_cols=35  Identities=17%  Similarity=0.256  Sum_probs=31.2

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..|+|.|| |-.|..++..|.+.|.+|+++.|....
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   41 (341)
T 3enk_A            6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNS   41 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSS
T ss_pred             cEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcc
Confidence            46999996 999999999999999999999987653

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=83.27  E-value=1.1  Score=43.87  Aligned_cols=47  Identities=9%  Similarity=0.110  Sum_probs=29.9

Q ss_pred             CCCcccccCCCC--ccCCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           30 ALSDSKTIVSNE--AVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        30 ~~~~~~~~~~~~--~~~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .+||.+|..++.  ..--|+|.|| |-.|..+|..|++.|.+|++++|+.
T Consensus        16 ~~~~~~m~~~m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~   65 (301)
T 3tjr_A           16 TQGPGSMDGFLSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQ   65 (301)
T ss_dssp             --------CCCCCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCccchhHHhccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            355555533221  2235889997 5789999999999999999998863

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=83.21  E-value=0.95  Score=45.44  Aligned_cols=33  Identities=30%  Similarity=0.464  Sum_probs=28.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      -.|+|+|+|+.|++++..++..|. +|+++++.+
T Consensus       168 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~  201 (352)
T 3fpc_A          168 DTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRK  201 (352)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence            469999999999999988888899 799998653

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=83.06  E-value=1.1  Score=42.39  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=28.6

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..|+|.|| |-.|..+|..|++.|.+|++++|.+
T Consensus        14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~   47 (260)
T 3awd_A           14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDE   47 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35888886 7889999999999999999998763

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=82.81  E-value=1.4  Score=44.08  Aligned_cols=35  Identities=31%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             cCCEEEECC-CHHHHHHHHHHHh--CCCCEEEEcCCCC
Q 008258           43 VVPVLIVGA-GPVGLVLSILLTK--LGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGa-GpaGL~~A~~La~--~Gi~v~viEr~~~   77 (572)
                      ...|+|.|| |-.|..++..|.+  .|++|++++|.+.
T Consensus        10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A           10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            356999976 9999999999999  8999999998654

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=82.80  E-value=1  Score=43.81  Aligned_cols=33  Identities=18%  Similarity=0.194  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ..|+|+|+|-+|.++|..|++.|+ +|.|+.|..
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            469999999999999999999997 899998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	572
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-26
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	8e-13
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	1e-09
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-11
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	8e-11
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	5e-08
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	0.003
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	4e-06
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	7e-06
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	2e-05
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	2e-05
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	2e-05
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	3e-05
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	4e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	4e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	4e-05
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	8e-05
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	2e-04
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-04
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	4e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	4e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	0.001
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.001
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	0.002
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	0.002
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	0.002
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.002
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	0.002
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	0.002
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.002
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.002
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	0.002
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.003
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.004
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.004

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score =  108 bits (269), Expect = 2e-26
 Identities = 79/408 (19%), Positives = 124/408 (30%), Gaps = 84/408 (20%)

Query: 39  SNEAVVPVLIVGAGPVGLVLSILL-----TKLGIKCSVLEKNKAFSTHPQAHFINNRYAL 93
            +E+   VLIVGAGP GL+ + +L      K  +K  +++K      + QA  +  R   
Sbjct: 3   YSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLE 62

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFS 153
             + L GLA++I      +      +Y     G I       +  D    +S        
Sbjct: 63  SLKNL-GLADKILSEANDMSTIA--LYNPDENGHI---RRTDRIPDTLPGISRYHQVVLH 116

Query: 154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASF 213
           Q ++ + +L  + +++      E                                     
Sbjct: 117 QGRIERRILDSIAEISDTRIKVERP----------------------------------- 141

Query: 214 LKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273
                     ++ +     D     V   +      E                     ++
Sbjct: 142 -----LIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDES--------------TPLQFGHK 182

Query: 274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWEL 333
               LF             + L EG+                      E +  K V    
Sbjct: 183 TENGLFRSNLQTQEEEDANYRLPEGKE-----------------AGEIETVHCKYVIGCD 225

Query: 334 SDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393
                +          V EKF     ++ +AGDACH   P  G GMNT + D +NL WK+
Sbjct: 226 GGHSWVRRTLGFEM-IVTEKF-SKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKL 283

Query: 394 ASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLD 441
             VL   A   IL TYE ER+P A+       Q  R     P+    D
Sbjct: 284 GLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVAD 331

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 66.9 bits (162), Expect = 8e-13
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 37/201 (18%)

Query: 45  PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQAHFINNRYALVFRKLDGLA 102
            V I+GAGP GL+L  LL K GI   +LE+          +A  +      + R+  G+ 
Sbjct: 4   QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GVD 62

Query: 103 EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLL 162
             + R     +                      +  D +++    +V  + Q ++ + L+
Sbjct: 63  RRMARDGLVHEGVEIAFAG------------QRRRIDLKRLSGGKTVTVYGQTEVTRDLM 110

Query: 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTER 222
           +  E                     G   +     V +    Q      +F ++G+    
Sbjct: 111 EAREA-------------------CGATTVYQAAEVRLH-DLQGERPYVTFERDGE--RL 148

Query: 223 NIQCNILIGTDGAGSTVRKLV 243
            + C+ + G DG     R+ +
Sbjct: 149 RLDCDYIAGCDGFHGISRQSI 169

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 57.3 bits (137), Expect = 1e-09
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKP 415
             + ++ LAGDA H  PP G  G+N    D   L   +    ++     +L  Y      
Sbjct: 174 MQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE-GRGELLERYSAICLR 232

Query: 416 IAEFNTALSVQNFRAAM 432
                     + F   M
Sbjct: 233 RIW-----KAERFSWWM 244

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 338 VIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL 397
           V                     +I L GDA H   P G  G +  + D   LA  +A   
Sbjct: 168 VRAHLHPDQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALA--- 224

Query: 398 KDIAPASILNTYETERKPIAEFNTALSVQNFRAAMEVPS 436
           ++   A+ L  YE  R+P A      + +  +      S
Sbjct: 225 RNADVAAALREYEEARRPTANKIILANREREKEEWAAAS 263

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 60.9 bits (146), Expect = 8e-11
 Identities = 29/197 (14%), Positives = 54/197 (27%), Gaps = 31/197 (15%)

Query: 46  VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE 104
           +LI GAG  GL  ++ L + GI K ++LE +           I         +L      
Sbjct: 4   ILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPAL 63

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ 164
              +          +     +G  + S               +         L       
Sbjct: 64  AATAI-----PTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAA----- 113

Query: 165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNI 224
                                L  + +  G     +   D  + +     ++G    + +
Sbjct: 114 -----------------VRERLGQQAVRTGLGVERIEERDGRVLIG---ARDGHGKPQAL 153

Query: 225 QCNILIGTDGAGSTVRK 241
             ++L+G DG  S VR 
Sbjct: 154 GADVLVGADGIHSAVRA 170

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK-AFSTHPQAHFINNRYALVFRKLDGLAEE 104
           + +VG    GL  +++L   G+   V E++    S       +         +     + 
Sbjct: 7   IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDS 66

Query: 105 IERSQPPVDLWRKF 118
           I      ++     
Sbjct: 67  ISVPSSSMEYVDAL 80

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 3/109 (2%)

Query: 343 PWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP 402
                  +       + +++L GDA     P    G      DA  LA        D+  
Sbjct: 154 VRKRLLGIETVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTKN-HDLRG 212

Query: 403 ASILNTYETERKPIAEFNTALSVQNFRAAMEVPSALGLDPTIANSVHQL 451
           +  L ++ET +            +         S    +P  A  + ++
Sbjct: 213 S--LQSWETRQLQQGHAYLNKVKKMASRLQHGGSFEPGNPAFAFGLPKV 259

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK------AFSTHPQAHFINNRYALVFRKLD 99
           V+++G GP GL+ +I   + G    +L+K        A S   + +  N        K  
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64

Query: 100 GLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYK 156
                   S   +      I      G  L   DH +          V  A  ++ K
Sbjct: 65  PGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK 121

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 12/103 (11%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKN------------KAFSTHPQAHFINNRYAL 93
           V ++GAG  GL  +  L   G+  +V E                      A+ +      
Sbjct: 4   VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGD 63

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQ 136
           V   +D L    ++  P     R      +        +D ++
Sbjct: 64  VTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIK 106

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 47/365 (12%), Positives = 98/365 (26%), Gaps = 35/365 (9%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF----STHPQ--------AHFINNRYAL 93
           V +VG G  GL ++  L   G    +LE +        TH           +   +R   
Sbjct: 3   VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPA 62

Query: 94  VFRKLDGLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFS 153
                  L  E           R+++Y       +  S       D   + + + VA   
Sbjct: 63  TRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGEL 122

Query: 154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASF 213
             +     + +      +         +    +Q        E +SV+AT   +  +   
Sbjct: 123 FSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPML--VKME 180

Query: 214 LKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273
            +        I+           +     +   L       +++     +       +  
Sbjct: 181 REHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGA 240

Query: 274 RPGMLFFIFNTEAIGVLVAHDLKEGEF---ILQVPFYPPQQNLEDFSPEICEKLIFKLVG 330
           R   L        + +       E      +L  P +   + L      +          
Sbjct: 241 RVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAA-------- 292

Query: 331 WELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLA 390
             ++ I  +     V      +  L     + L G+A        G G+N  +++A  LA
Sbjct: 293 -LVAGIYNLGHLERV---AAIDAALQRLPGLHLIGNAYK------GVGLNDCIRNAAQLA 342

Query: 391 WKIAS 395
             + +
Sbjct: 343 DALVA 347

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
           +I+GAG  GL  +  L KLG   +V +  K
Sbjct: 7  NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK 37

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 27/196 (13%), Positives = 52/196 (26%), Gaps = 14/196 (7%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKN-----KAFSTHPQ--------AHFINNRYA 92
           V++VG G  G+  + LL   G+   VLE       + ++   Q          ++     
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN 61

Query: 93  LVFRKLDGLAEEIERSQPPVDL-WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH 151
            + R    L  E  +      L            GP     + +   D       +    
Sbjct: 62  RILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMG 121

Query: 152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIA 211
                         E+ +         +       +    L  + CV+    +       
Sbjct: 122 REIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFL 181

Query: 212 SFLKEGKCTERNIQCN 227
            ++K+   T R I   
Sbjct: 182 WYVKQCGGTTRIISTT 197

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          +LIVGAG  G V+   L + G +  ++++ 
Sbjct: 5  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQR 34

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+++G G    +LS +++  G K   +++N
Sbjct: 9  VIVLGTGLTECILSGIMSVNGKKVLHMDRN 38

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
           +IVG+G  G V +  L KL  K  V+EK  
Sbjct: 4  YIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+++G G    +LS LL+  G K   ++K 
Sbjct: 8  VIVLGTGITECILSGLLSVDGKKVLHIDKQ 37

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V VL+VGAG  GL     L +LG    V+E     
Sbjct: 8  VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+IVGAG  GL  + +L   G + +VLE +
Sbjct: 33 VVIVGAGMAGLSAAYVLAGAGHQVTVLEAS 62

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 37/351 (10%), Positives = 82/351 (23%), Gaps = 20/351 (5%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF----STHPQAHFINNRYALVFRKLDG 100
           V++VGAG  G+  +  L++ GI    +LE              A       A     ++G
Sbjct: 3   VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNG 62

Query: 101 LAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKL 160
                        L  +               +     D + V   + +A   +    KL
Sbjct: 63  GKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKL 122

Query: 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCT 220
                      +          +        +           +       + L+     
Sbjct: 123 SATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPL 182

Query: 221 ERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280
                    +           +V                    +   + ++ E       
Sbjct: 183 ATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG 242

Query: 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID 340
           +        + + D      ++       Q +L  F P+        L  W++  I    
Sbjct: 243 VTVKTEDNSVYSAD----YVMVSASLGVLQSDLIQFKPK--------LPTWKVRAIY--Q 288

Query: 341 IKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFG-MNTGVQDAHNLA 390
             P  ++    ++      ++   G+           G   +G+  A  L 
Sbjct: 289 FWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILI 339

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
          V+I+G+G  GL  +  L   G+  ++LE  
Sbjct: 8  VIIIGSGVSGLAAARQLQSFGMDVTLLEAR 37

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 6/120 (5%)

Query: 46  VLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD 99
           V+IVGAGP GL  +  L +L       ++  ++EK      H  +    +  A      D
Sbjct: 35  VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPD 94

Query: 100 GLAEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNK 159
              +    + P  +     +         +     M       V     V+   +     
Sbjct: 95  WKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEAL 154

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
          V++VG+G  G   +I  T  G K  ++EK      +
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 54

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
          V+I+G+G  GL  ++     G K  +LEK      +
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 61

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75
           +++G G +G  ++  L K     ++ E  
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENKNTALFESG 36

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V+++G GP G   +      G+K +++E+ K  
Sbjct: 9  VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 38.8 bits (89), Expect = 0.002
 Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 3/99 (3%)

Query: 42  AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGL 101
             VP +++G G    V ++ L + G++  +LE  + ++       I        ++    
Sbjct: 1   GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 60

Query: 102 AEEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDF 140
                R++ P+  +           P  G +D +     
Sbjct: 61  ---KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQM 96

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFIN 88
          VLIVG+GP G   +I   + GI+  ++ +             N
Sbjct: 4  VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIEN 46

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAH 85
          V++VGAG +G+     L K G+K  +++      T+   H
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHH 45

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78
          V+I+G GP G V +I   +LG K + +EK  A 
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL 38

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH 81
          VL+VGAG  G   S+   K G    +++K      +
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 57

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 23/181 (12%), Positives = 47/181 (25%), Gaps = 16/181 (8%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE 104
           + ++GAGP  +  +  L +LG    ++ EK +       +     R              
Sbjct: 7   IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRL------------- 53

Query: 105 IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQ 164
                       K +    + G  L   +       E+      +       L     K 
Sbjct: 54  PYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLR--DPKV 111

Query: 165 LEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNI 224
            E L+           +    +Q  E  +      V   +  +  +    +      + I
Sbjct: 112 KEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYI 171

Query: 225 Q 225
           Q
Sbjct: 172 Q 172

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 6/31 (19%), Positives = 18/31 (58%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
          ++++G G  G+  +    +   K +++EK++
Sbjct: 4  LIVIGGGSGGMAAARRAARHNAKVALVEKSR 34

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 8/46 (17%), Positives = 17/46 (36%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRY 91
           + +G G  G+         G KC+++E  +   T      +  + 
Sbjct: 5  YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKV 50

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (84), Expect = 0.004
 Identities = 9/64 (14%), Positives = 21/64 (32%)

Query: 46  VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEI 105
           +LI+G+GP G   ++   +  ++  ++   +          + N           L  E 
Sbjct: 8   LLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMER 67

Query: 106 ERSQ 109
               
Sbjct: 68  MHEH 71

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76
           L+VGAGP G V +I   +LG K +++EK  
Sbjct: 6  TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	572
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	100.0
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.98
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.96
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.89
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.75
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.58
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.45
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.43
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.34
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.29
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.24
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.16
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.14
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.13
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.09
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.01
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.0
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.98
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.96
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.9
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.88
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.87
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.86
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.86
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.82
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.8
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.8
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.77
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.76
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.74
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.72
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.71
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.71
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.68
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.67
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.62
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.56
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.56
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.54
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.54
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.51
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.49
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.49
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.49
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.48
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.48
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.45
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.44
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.42
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.42
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.39
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.38
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.38
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.37
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.37
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.32
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.32
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.31
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.3
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.28
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.26
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.22
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.21
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.17
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.16
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.16
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.15
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.12
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.07
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.0
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.98
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.97
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.94
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.9
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.9
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.84
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.82
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.79
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.78
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.77
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.64
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.56
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.53
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.44
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.4
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.31
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.18
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.04
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.93
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.72
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.55
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.44
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.44
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.22
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.21
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.06
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.0
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	95.9
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.87
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.7
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.21
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.12
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.1
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.08
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.06
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.97
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.96
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.84
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	94.56
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.47
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.42
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.37
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.36
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.25
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.2
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.15
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.13
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.09
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	93.53
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.53
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.43
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.29
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.28
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.17
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.01
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.84
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.75
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.65
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.63
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	92.61
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.6
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.59
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.58
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	92.34
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	92.27
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.17
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.14
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.94
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.77
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.6
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.29
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.21
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	91.14
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.72
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	90.39
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	90.33
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.29
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	90.07
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.96
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	89.94
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	89.89
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.78
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.51
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	89.22
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	88.56
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	88.55
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.16
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.07
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	88.07
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.98
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	87.38
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	87.33
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.08
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	86.98
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	86.96
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	86.85
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.09
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.54
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	85.4
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.2
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	84.87
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.35
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	84.25
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	83.04
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	82.85
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.48
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	82.46
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	82.22
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	82.08
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	81.98
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	81.83
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	81.65
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	81.54
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	80.7
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	80.44
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	80.43

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=100.00  E-value=1.1e-34  Score=297.53  Aligned_cols=308  Identities=24%  Similarity=0.280  Sum_probs=186.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHH-----hCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLT-----KLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLW  115 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La-----~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~  115 (572)
                      +..|||+||||||+||++|+.|+     ++|++|+||||++.+...++++.|+++++++|+++ |+++++...+.+....
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~i~~~~~~~~~~   83 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNL-GLADKILSEANDMSTI   83 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTT-TCHHHHHTTCBCCCEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHc-CChHHHHhhcCCccee
Confidence            44699999999999999999997     57999999999999999999999999999999999 9999999988766443


Q ss_pred             cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258          116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH  195 (572)
Q Consensus       116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~  195 (572)
                      ..  +.....+.........   .............+.|..++..|.+.+.+.+.                  .......
T Consensus        84 ~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~~~~  140 (360)
T d1pn0a1          84 AL--YNPDENGHIRRTDRIP---DTLPGISRYHQVVLHQGRIERRILDSIAEISD------------------TRIKVER  140 (360)
T ss_dssp             EE--EEECTTSCEEEEEEEE---SSCTTSCSSCCEECCHHHHHHHHHHHHHHHHT------------------TSSCEEC
T ss_pred             EE--EecccCCccccccccc---ccccccccchheeecHHHHHHHHHHHHHhccc------------------cceeeeE
Confidence            22  1122233322111100   00011122334567889999998888765432                  0111000


Q ss_pred             EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCC
Q 008258          196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP  275 (572)
Q Consensus       196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~  275 (572)
                      .                      .....+.+|++++|||.+|.||.............  .          ... .....
T Consensus       141 ~----------------------~~~~~~~~d~~~~~dg~~s~v~~~~~~~~~~~~~~--~----------~~~-~~~~~  185 (360)
T d1pn0a1         141 P----------------------LIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTP--L----------QFG-HKTEN  185 (360)
T ss_dssp             S----------------------EEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCC--C----------TTC-CCCCS
T ss_pred             e----------------------cccceEEeeEEEEeecCCcceEEEEEEeecccccc--e----------eee-eecCC
Confidence            0                      01225789999999999999986542211100000  0          000 00000


Q ss_pred             ceEEE--EEecCc-eEEEEEecCCCCeEEEE-eecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceec
Q 008258          276 GMLFF--IFNTEA-IGVLVAHDLKEGEFILQ-VPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVA  351 (572)
Q Consensus       276 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a  351 (572)
                      +....  ...+.. ..+..+......++... ..+.... . ......                     ...+.....++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~---------------------~~~~~~~~~~~  242 (360)
T d1pn0a1         186 GLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGC-D-GGHSWV---------------------RRTLGFEMIVT  242 (360)
T ss_dssp             SSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEEC-C-CTTCHH---------------------HHHHTCCCEEC
T ss_pred             CceEEeeecCCcccceeecCcccchhhHHHHHHHhhcCc-c-cccchh---------------------hcccccccchh
Confidence            00000  000000 00000000000111100 0000000 0 000000                     00111233344


Q ss_pred             ccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258          352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA  431 (572)
Q Consensus       352 ~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~  431 (572)
                      .+|.. .|||+|+|||||.++|++|||+|+||+||.+|+|+|+.+.++.+.+.+|++|+++|++++..++..+....+.+
T Consensus       243 ~~~~~-~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~  321 (360)
T d1pn0a1         243 EKFSK-DERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLF  321 (360)
T ss_dssp             SCSEE-TTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hheee-cCcEEEccCcccccccccCCCCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55542 58999999999999999999999999999999999999998888899999999999999999888876655544

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.98  E-value=2.4e-31  Score=263.24  Aligned_cols=255  Identities=22%  Similarity=0.273  Sum_probs=188.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      +||+|||||||||++|+.|+++|+ +|+|+||++.+...++++.++++++++|+.+ |+.+.+...+.+...    ....
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~-~~~~~~~~~~~~~~~----~~~~   76 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAEL-GLGPALAATAIPTHE----LRYI   76 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHT-TCHHHHHHHSEEECE----EEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHc-CchhhhHhhhccccc----ceeE
Confidence            689999999999999999999997 8999999999998999999999999999999 999999876644321    1223


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                      +.+|..+.........     ..........+......+.+.+.+..                 .+..+.++++++.+++
T Consensus        77 ~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~~~~~  134 (288)
T d3c96a1          77 DQSGATVWSEPRGVEA-----GNAYPQYSIHRGELQMILLAAVRERL-----------------GQQAVRTGLGVERIEE  134 (288)
T ss_dssp             CTTSCEEEEEECGGGG-----TCSSCEEEEEHHHHHHHHHHHHHHHH-----------------CTTSEEESEEEEEEEE
T ss_pred             cCCCCEEEeccccccc-----cccCcccccchhhhHHHHHHHHHHhc-----------------cCeeeecCcEEEEeee
Confidence            4556655433321111     01111222333344444444433211                 1248899999999999


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEE
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (572)
                      +++++++++.   ++.++.+++++|+||+|||.+|.||+.+.......                     .          
T Consensus       135 ~~~~v~v~~~---~g~~~~~~~~ad~vi~ADG~~S~vr~~~~~~~~~~---------------------~----------  180 (288)
T d3c96a1         135 RDGRVLIGAR---DGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPL---------------------R----------  180 (288)
T ss_dssp             ETTEEEEEEE---ETTSCEEEEEESEEEECCCTTCHHHHHHCTTCCCC---------------------C----------
T ss_pred             cCCcEEEEEE---cCCCCeEEEeeceeeccCCccceeeeeeccccccc---------------------c----------
Confidence            9999999987   45445668999999999999999998763210000                     0          


Q ss_pred             ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCCcEE
Q 008258          283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQII  362 (572)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~grV~  362 (572)
                                     .             .                                      ...+.  .++++
T Consensus       181 ---------------~-------------~--------------------------------------~~~~~--~~~~~  192 (288)
T d3c96a1         181 ---------------D-------------P--------------------------------------LPHWG--RGRIT  192 (288)
T ss_dssp             ---------------C-------------C--------------------------------------CSCCC--BTTEE
T ss_pred             ---------------c-------------c--------------------------------------ccccc--cCcce
Confidence                           0             0                                      00122  48999


Q ss_pred             EEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258          363 LAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA  430 (572)
Q Consensus       363 LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~  430 (572)
                      ++|||+|.++|+.|||+|++|+|+.+|+++|..   +.+.+.+|+.|+++|+|++..++..+.+..+.
T Consensus       193 ~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~~---~~~~~~al~~y~~~r~pr~~~~~~~~~~~~~~  257 (288)
T d3c96a1         193 LLGDAAHLMYPMGANGASQAILDGIELAAALAR---NADVAAALREYEEARRPTANKIILANREREKE  257 (288)
T ss_dssp             ECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHH---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccceeCCccccchhhhhhhHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999975   55678899999999999999888877655443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=1.2e-28  Score=245.65  Aligned_cols=238  Identities=21%  Similarity=0.299  Sum_probs=179.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~--~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ++||+||||||+||++|+.|+++|++|+||||++..  ...+++..++++++++|+++ |+++.+.+.+.+.....   .
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~l-g~~~~l~~~~~~~~~~~---~   77 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREA-GVDRRMARDGLVHEGVE---I   77 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHT-TCCHHHHHHCEEESCEE---E
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHc-CchHHHHhhcccccceE---E
Confidence            579999999999999999999999999999998754  34568899999999999999 99999988776543221   1


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec-cEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG-HECVS  199 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g-~~v~~  199 (572)
                      ..   +......+      ......+.....++|..+++.|++.+.+.+.                   .+.++ +.+..
T Consensus        78 ~~---~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-------------------~~~~~~~~~~~  129 (292)
T d1k0ia1          78 AF---AGQRRRID------LKRLSGGKTVTVYGQTEVTRDLMEAREACGA-------------------TTVYQAAEVRL  129 (292)
T ss_dssp             EE---TTEEEEEC------HHHHHTSCCEEECCHHHHHHHHHHHHHHTTC-------------------EEESSCEEEEE
T ss_pred             Ee---cccccccc------cccccccccceeecHHHHHHHHHHHHHhCCC-------------------cEEEcceeeee
Confidence            11   11111111      0111123334678899999999999988775                   44444 45556


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF  279 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  279 (572)
                      +.+++++++|++.  ++|  ++.+++||+||||||.+|.+|++++.                                  
T Consensus       130 ~~~~~~~~~v~~~--~~g--~~~~i~a~~vVgADG~~S~vR~~i~~----------------------------------  171 (292)
T d1k0ia1         130 HDLQGERPYVTFE--RDG--ERLRLDCDYIAGCDGFHGISRQSIPA----------------------------------  171 (292)
T ss_dssp             ECTTSSSCEEEEE--ETT--EEEEEECSEEEECCCTTCSTGGGSCG----------------------------------
T ss_pred             eeeccCceEEEEe--cCC--cEEEEEeCEEEECCCCCCcccceeee----------------------------------
Confidence            6677888888776  345  34579999999999999999986410                                  


Q ss_pred             EEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCC
Q 008258          280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYN  359 (572)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~g  359 (572)
                                                                                              ..+.  .+
T Consensus       172 ------------------------------------------------------------------------~~~~--~~  177 (292)
T d1k0ia1         172 ------------------------------------------------------------------------ERMQ--HG  177 (292)
T ss_dssp             ------------------------------------------------------------------------GGSE--ET
T ss_pred             ------------------------------------------------------------------------cccc--cc
Confidence                                                                                    0111  37


Q ss_pred             cEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHH
Q 008258          360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV  425 (572)
Q Consensus       360 rV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~  425 (572)
                      +..++||++|.++|..|+|+|+++.|+.+|+|++..++.+. ...++..|..++.++......++.
T Consensus       178 ~~~~~~~~~~~~~p~~~~~~n~~~~d~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  242 (292)
T d1k0ia1         178 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREG-RGELLERYSAICLRRIWKAERFSW  242 (292)
T ss_dssp             TEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHC-CGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred             ccccceeeeeecCCccccccccccccccccccceeeEecCC-CHHHhhhhHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999887643 456889999998888755544443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.89  E-value=3.2e-22  Score=195.23  Aligned_cols=229  Identities=19%  Similarity=0.223  Sum_probs=164.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~-~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .+|+||||||+||++|+.|+++|++|+||||.+.+ ...+++..++++++++|+.+ |+..++.....     ..+.+..
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~-g~~~~~~~~~~-----~~~~~~~   78 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQ-GVELDSISVPS-----SSMEYVD   78 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHT-TCCGGGTCBCC-----CEEEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHc-CcchhhhccCC-----CcceeEe
Confidence            57999999999999999999999999999998775 44578889999999999999 87654432221     2223333


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                      ...++.+.....                ..........+...+...+                  ...++++++++++++
T Consensus        79 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~v~~~~~  124 (265)
T d2voua1          79 ALTGERVGSVPA----------------DWRFTSYDSIYGGLYELFG------------------PERYHTSKCLVGLSQ  124 (265)
T ss_dssp             TTTCCEEEEEEC----------------CCCEEEHHHHHHHHHHHHC------------------STTEETTCCEEEEEE
T ss_pred             ccCCceeccccc----------------ccccchhHHHHHHHHHhcc------------------cceeecCcEEEEEEe
Confidence            344554433211                1111122222223232221                  248899999999999


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEE
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF  282 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  282 (572)
                      +++++++++.   +|+    ++++|++|+|||.+|.+|..+....                                   
T Consensus       125 ~~~~v~v~~~---dG~----~~~~d~~v~adG~~s~~r~~~~~~~-----------------------------------  162 (265)
T d2voua1         125 DSETVQMRFS---DGT----KAEANWVIGADGGASVVRKRLLGIE-----------------------------------  162 (265)
T ss_dssp             CSSCEEEEET---TSC----EEEESEEEECCCTTCHHHHHHHCCC-----------------------------------
T ss_pred             eCCceEEEEC---CCC----EEEEEEEeccccccccccccccccc-----------------------------------
Confidence            9999988875   664    6899999999999999986431000                                   


Q ss_pred             ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCCcEE
Q 008258          283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQII  362 (572)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~grV~  362 (572)
                                                   .                              .+        .+.  ..++.
T Consensus       163 -----------------------------~------------------------------~~--------~~~--~~~~~  173 (265)
T d2voua1         163 -----------------------------T------------------------------VD--------RMV--HGRVL  173 (265)
T ss_dssp             -----------------------------C------------------------------CS--------CSE--ETTEE
T ss_pred             -----------------------------c------------------------------cc--------ccc--ccccc
Confidence                                         0                              00        000  25777


Q ss_pred             EEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHH
Q 008258          363 LAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ  426 (572)
Q Consensus       363 LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~  426 (572)
                      ..||++|.+.|..++|.+++++|+..|++.+..   .......|+.|+..|.++++..+..+..
T Consensus       174 ~~~~~a~~~~p~~~~g~~~~~~d~~~l~~~l~~---~~~~~~~l~~~~~~r~~~~~~~~~~~r~  234 (265)
T d2voua1         174 LIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK---NHDLRGSLQSWETRQLQQGHAYLNKVKK  234 (265)
T ss_dssp             ECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccceeeeccHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999998875   3456778999999999999877665543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.75  E-value=5.5e-17  Score=166.45  Aligned_cols=136  Identities=17%  Similarity=0.145  Sum_probs=83.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHh------CCCCEEEEcCCCCCCCCCC-eeeeChhHHHHHHhhcchHHHHHhcCCCcc
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTK------LGIKCSVLEKNKAFSTHPQ-AHFINNRYALVFRKLDGLAEEIERSQPPVD  113 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~------~Gi~v~viEr~~~~~~~~~-a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~  113 (572)
                      ..++||||||||||||++|+.|+|      .|++|+||||...+..+.+ +..+.+++++.|-  +...+    ...+..
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~--p~~~~----~~~~~~  103 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELF--PDWKE----KGAPLN  103 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHC--TTHHH----HTCCCC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHc--cchhh----hccccc
Confidence            456999999999999999999998      7999999999999876664 5667887776552  22221    111211


Q ss_pred             c--ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceE
Q 008258          114 L--WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREI  191 (572)
Q Consensus       114 ~--~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i  191 (572)
                      .  .....+.....+.  ..........    ..+.......+..+...+.+.+++.|+                   .+
T Consensus       104 ~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~Ae~~g~-------------------~~  158 (380)
T d2gmha1         104 TPVTEDRFGILTEKYR--IPVPILPGLP----MNNHGNYVVRLGHLVSWMGEQAEALGV-------------------EV  158 (380)
T ss_dssp             EECCEEEEEEECSSCE--EECCCCTTST----TCCTTCEECCHHHHHHHHHHHHHHTTC-------------------EE
T ss_pred             cceecceEEEeecccc--ccccccCchh----cccccceeehhhHHHHHHHHHHhhccc-------------------ee
Confidence            1  1111111111111  1111111000    112234566788999999999999887                   55


Q ss_pred             EeccEEEEEeeeCCeE
Q 008258          192 LMGHECVSVSATDQCI  207 (572)
Q Consensus       192 ~~g~~v~~v~~~~~~v  207 (572)
                      ..+..+..+..+++++
T Consensus       159 ~~~~~~~~~l~~~~g~  174 (380)
T d2gmha1         159 YPGYAAAEILFHEDGS  174 (380)
T ss_dssp             ETTCCEEEEEECTTSS
T ss_pred             eeecceeeeeeccCCc
Confidence            5566666665555443

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.58  E-value=5.7e-16  Score=149.26  Aligned_cols=159  Identities=15%  Similarity=0.181  Sum_probs=89.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------CCeeeeChhHHHHH-Hhhc---chHHHHHhcCCCc
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQAHFINNRYALVF-RKLD---GLAEEIERSQPPV  112 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~------~~a~~l~~rt~e~l-~~l~---Gl~~~l~~~~~~~  112 (572)
                      ++||+||||||+||++|+.|+++|++|+||||.+.+...      ......+......+ ...+   .............
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE   81 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhH
Confidence            699999999999999999999999999999998765311      00001111011111 0000   0000000000000


Q ss_pred             ccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEE
Q 008258          113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREIL  192 (572)
Q Consensus       113 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~  192 (572)
                      ....   +.. ..|......      .    .............+.+.|.+.+++.|+                   +++
T Consensus        82 ~~~~---~~~-~~g~~~~~~------~----~~~~~~~~~~~~~i~~~L~~~~~~~gv-------------------~i~  128 (251)
T d2i0za1          82 DIIT---FFE-NLGVKLKEE------D----HGRMFPVSNKAQSVVDALLTRLKDLGV-------------------KIR  128 (251)
T ss_dssp             HHHH---HHH-HTTCCEEEC------G----GGEEEETTCCHHHHHHHHHHHHHHTTC-------------------EEE
T ss_pred             HHHH---HHH-hcCCccccc------c----ccceecccccHHHHHHHHHHHHHHcCC-------------------ccc
Confidence            0000   000 000000000      0    000001222345677888999998887                   899


Q ss_pred             eccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhh
Q 008258          193 MGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR  240 (572)
Q Consensus       193 ~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR  240 (572)
                      ++++|++++.+++.+.....  +++.    +++||+||.|||.+|..+
T Consensus       129 ~~~~v~~i~~~~~~~~~v~~--~~g~----~i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         129 TNTPVETIEYENGQTKAVIL--QTGE----VLETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             CSCCEEEEEEETTEEEEEEE--TTCC----EEECSCEEECCCCSSSGG
T ss_pred             CCcEEEEEEEECCEEEEEEe--CCCC----eEecCeEEEccCCccccc
Confidence            99999999988887653332  2453    689999999999999654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=1.4e-13  Score=132.67  Aligned_cols=146  Identities=18%  Similarity=0.177  Sum_probs=87.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------CCe------------eeeChh-HHHHHHhhcch
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQA------------HFINNR-YALVFRKLDGL  101 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~------~~a------------~~l~~r-t~e~l~~l~Gl  101 (572)
                      +..+||+|||||||||++|+.|+++|++|+||||.+.+...      ++.            ...+++ ..++|... ..
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~-~~   80 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARY-TN   80 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHS-CH
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhh-cc
Confidence            45689999999999999999999999999999999765310      000            001111 11222222 11


Q ss_pred             HHH---HHhcCCCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCc
Q 008258          102 AEE---IERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT  178 (572)
Q Consensus       102 ~~~---l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~  178 (572)
                      .+.   +...+.+..        . ..+.                  .. +..-....+.+.|.+.+++.|+        
T Consensus        81 ~~~~~~~~~~g~~~~--------~-~~~~------------------~~-~~~~~a~~i~~~L~~~~~~~gV--------  124 (253)
T d2gqfa1          81 WDFISLVAEQGITYH--------E-KELG------------------QL-FCDEGAEQIVEMLKSECDKYGA--------  124 (253)
T ss_dssp             HHHHHHHHHTTCCEE--------E-CSTT------------------EE-EETTCTHHHHHHHHHHHHHHTC--------
T ss_pred             cchhhhhhhcCccee--------e-ecCC------------------cc-ccccchhHHHHHHHHHHHHcCC--------
Confidence            111   111111100        0 0000                  00 0112345677889999999887        


Q ss_pred             ccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258          179 EGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST  238 (572)
Q Consensus       179 ~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~  238 (572)
                                 +|+++++|++++..+++..+.+.-..++    .+++||.||.|+|..|.
T Consensus       125 -----------~i~~~~~V~~i~~~~~~~~v~~~~~~~~----~~~~a~~VIiAtGG~S~  169 (253)
T d2gqfa1         125 -----------KILLRSEVSQVERIQNDEKVRFVLQVNS----TQWQCKNLIVATGGLSM  169 (253)
T ss_dssp             -----------EEECSCCEEEEEECCSCSSCCEEEEETT----EEEEESEEEECCCCSSC
T ss_pred             -----------CeecCceEEEEEeecCCceeEEEEecCC----EEEEeCEEEEcCCcccc
Confidence                       8999999999987666433222111133    27899999999999884

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.43  E-value=1e-13  Score=135.11  Aligned_cols=69  Identities=20%  Similarity=0.301  Sum_probs=55.6

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      .++...+.+.|.+.+.+.|+                   +++.+++|++++.+++.+.|+..   +|     +++||.||
T Consensus       147 ~i~~~~~~~~l~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~t~---~g-----~i~a~~vV  199 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLGA-------------------EIFEHTPVLHVERDGEALFIKTP---SG-----DVWANHVV  199 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTTC-------------------EEETTCCCCEEECSSSSEEEEET---TE-----EEEEEEEE
T ss_pred             eeecccchhHHHHHHHHcCC-------------------EEecceEEEeEEeecceEEEecC---Ce-----EEEcCEEE
Confidence            45566788889999999987                   88899999999988887766553   44     68999999


Q ss_pred             eecCCChh-hhhhcCCc
Q 008258          231 GTDGAGST-VRKLVGID  246 (572)
Q Consensus       231 gADG~~S~-VR~~lg~~  246 (572)
                      .|.|++|. +.+.+|+.
T Consensus       200 ~AaG~~s~~l~~~~G~~  216 (276)
T d1ryia1         200 VASGVWSGMFFKQLGLN  216 (276)
T ss_dssp             ECCGGGTHHHHHHTTCC
T ss_pred             ECCCccHHHHHhhcCCC
Confidence            99999986 56677764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.34  E-value=3.4e-12  Score=128.07  Aligned_cols=67  Identities=10%  Similarity=-0.024  Sum_probs=53.6

Q ss_pred             cChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEe
Q 008258          152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG  231 (572)
Q Consensus       152 l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVg  231 (572)
                      .++..+.+.|.+.+...+.                   .|+++++|++++.++++++|++...+.+. +..+..+|+||.
T Consensus       110 ~~~~~~~~yl~~~~~~~~~-------------------~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~-~~~~~~~d~VI~  169 (335)
T d2gv8a1         110 PHRHTIQEYQRIYAQPLLP-------------------FIKLATDVLDIEKKDGSWVVTYKGTKAGS-PISKDIFDAVSI  169 (335)
T ss_dssp             CBHHHHHHHHHHHHGGGGG-------------------GEECSEEEEEEEEETTEEEEEEEESSTTC-CEEEEEESEEEE
T ss_pred             CchHHHHHHHHHHHHHhhh-------------------cccCceEEEEEEecCCEEEEEEEecCCCC-eEEEEEeeEEEE
Confidence            4677888888887766543                   79999999999999999999988544443 345678999999


Q ss_pred             ecCCChh
Q 008258          232 TDGAGST  238 (572)
Q Consensus       232 ADG~~S~  238 (572)
                      |+|..|.
T Consensus       170 AtG~~s~  176 (335)
T d2gv8a1         170 CNGHYEV  176 (335)
T ss_dssp             CCCSSSS
T ss_pred             ccccccc
Confidence            9999883

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.29  E-value=8.8e-12  Score=121.46  Aligned_cols=66  Identities=11%  Similarity=0.114  Sum_probs=52.1

Q ss_pred             ChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEee
Q 008258          153 SQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGT  232 (572)
Q Consensus       153 ~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgA  232 (572)
                      .-..+...|.+.+++.|+                   +++++++|++++.+++++.|+..   +|     +++||.||.|
T Consensus       148 ~p~~~~~~l~~~a~~~Gv-------------------~i~~~~~V~~i~~~~~~v~V~t~---~g-----~i~a~~VViA  200 (281)
T d2gf3a1         148 FSENCIRAYRELAEARGA-------------------KVLTHTRVEDFDISPDSVKIETA---NG-----SYTADKLIVS  200 (281)
T ss_dssp             EHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEECSSCEEEEET---TE-----EEEEEEEEEC
T ss_pred             cccccccccccccccccc-------------------cccCCcEEEEEEEECCEEEEEEC---Cc-----EEEcCEEEEC
Confidence            335678889999999887                   89999999999999999876653   44     5899999999


Q ss_pred             cCCChh-hhhhcCC
Q 008258          233 DGAGST-VRKLVGI  245 (572)
Q Consensus       233 DG~~S~-VR~~lg~  245 (572)
                      .|+.|. +-+.+|+
T Consensus       201 aG~~s~~l~~~lg~  214 (281)
T d2gf3a1         201 MGAWNSKLLSKLNL  214 (281)
T ss_dssp             CGGGHHHHGGGGTE
T ss_pred             CCCcchhhHHhcCC
Confidence            999875 2334443

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.24  E-value=9e-12  Score=122.60  Aligned_cols=139  Identities=19%  Similarity=0.161  Sum_probs=86.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ..++||+||||||+||++|..|++.|++|+||||.+.+                    +|.+..-..-+...+....   
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~i--------------------GGtW~~n~ypg~~~d~~~~---   61 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV--------------------GGVWYWNRYPGARCDIESI---   61 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS--------------------CTHHHHCCCTTCBCSSCTT---
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCc--------------------ccccccCCCCCceeccccc---
Confidence            45789999999999999999999999999999999875                    2443210000000000000   


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                              ..... ..+..+..  .+......++..+...|.+.+++.+.                 ...|+++++|+++
T Consensus        62 --------~~~~s-~~~~~~~~--~~~~~~~p~~~e~~~Yl~~~a~~~~L-----------------~~~I~f~t~V~~~  113 (298)
T d1w4xa1          62 --------EYCYS-FSEEVLQE--WNWTERYASQPEILRYINFVADKFDL-----------------RSGITFHTTVTAA  113 (298)
T ss_dssp             --------TSSCC-SCHHHHHH--CCCCBSSCBHHHHHHHHHHHHHHTTG-----------------GGGEECSCCEEEE
T ss_pred             --------ccccc-ccccccCC--CCCccccCccchHHHHHHHHHHHcCC-----------------cccccCCcEEEEE
Confidence                    00000 00000000  01111223567788888888888775                 1268999999999


Q ss_pred             eeeC--CeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258          201 SATD--QCINVIASFLKEGKCTERNIQCNILIGTDGAGS  237 (572)
Q Consensus       201 ~~~~--~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S  237 (572)
                      +.++  +.++|++.   ++.    ++++|+||.|.|..|
T Consensus       114 ~~de~~~~W~V~~~---~~~----~~~~~~~i~atG~ls  145 (298)
T d1w4xa1         114 AFDEATNTWTVDTN---HGD----RIRARYLIMASGQLS  145 (298)
T ss_dssp             EEETTTTEEEEEET---TCC----EEEEEEEEECCCSCC
T ss_pred             EEecCCCceeeccc---ccc----ccccceEEEeecccc
Confidence            8543  55666654   443    688999999999765

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.16  E-value=1.1e-10  Score=114.90  Aligned_cols=70  Identities=14%  Similarity=0.255  Sum_probs=54.5

Q ss_pred             ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258          151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI  230 (572)
Q Consensus       151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV  230 (572)
                      .++-..+...|.+.+.+.|+                   +++.+++|++++.++++++....  ++|     +++||.||
T Consensus       144 ~~~p~~l~~~l~~~a~~~gv-------------------~i~~~~~V~~i~~~~~~v~~V~T--~~g-----~i~a~~VV  197 (305)
T d1pj5a2         144 LASAARAVQLLIKRTESAGV-------------------TYRGSTTVTGIEQSGGRVTGVQT--ADG-----VIPADIVV  197 (305)
T ss_dssp             EECHHHHHHHHHHHHHHTTC-------------------EEECSCCEEEEEEETTEEEEEEE--TTE-----EEECSEEE
T ss_pred             ccchhhhhhhHHhhhhcccc-------------------cccCCceEEEEEEeCCEEEEEec--cce-----eEECCEEE
Confidence            34556788889999999887                   89999999999999998764333  233     68999999


Q ss_pred             eecCCChh-hhhhcCCc
Q 008258          231 GTDGAGST-VRKLVGID  246 (572)
Q Consensus       231 gADG~~S~-VR~~lg~~  246 (572)
                      .|.|++|. +.+.+|..
T Consensus       198 ~aaG~~s~~l~~~~g~~  214 (305)
T d1pj5a2         198 SCAGFWGAKIGAMIGMA  214 (305)
T ss_dssp             ECCGGGHHHHHHTTTCC
T ss_pred             EecchhHHHHHHHcCCc
Confidence            99999986 45555544

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.14  E-value=3.9e-10  Score=111.12  Aligned_cols=39  Identities=31%  Similarity=0.475  Sum_probs=35.8

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +..++||||||||++||++|+.|+++|.+|+||||.+..
T Consensus        13 p~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~   51 (308)
T d1y0pa2          13 PHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI   51 (308)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            356799999999999999999999999999999998764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.13  E-value=9.8e-10  Score=109.49  Aligned_cols=39  Identities=21%  Similarity=0.293  Sum_probs=35.8

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      |+...+||||||||+|||++|+.|+++|.+|+||||.+.
T Consensus         1 m~~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~   39 (336)
T d2bs2a2           1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV   39 (336)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred             CCceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            456779999999999999999999999999999999864

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.09  E-value=5.3e-10  Score=111.00  Aligned_cols=39  Identities=28%  Similarity=0.415  Sum_probs=35.7

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ....+||||||||++||++|+.|+++|.+|+||||.+..
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~   58 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP   58 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            455789999999999999999999999999999998764

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.01  E-value=1.8e-09  Score=106.86  Aligned_cols=39  Identities=28%  Similarity=0.405  Sum_probs=35.7

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +..++||||||||++||++|+.|+++|.+|+||||.+..
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~   54 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS   54 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            355799999999999999999999999999999998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.98  E-value=2.9e-10  Score=110.76  Aligned_cols=35  Identities=29%  Similarity=0.459  Sum_probs=33.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +||+||||||+||++|..|+++|++|+|+||.+.+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   35 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            48999999999999999999999999999998765

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.96  E-value=3.6e-09  Score=102.55  Aligned_cols=38  Identities=26%  Similarity=0.437  Sum_probs=34.4

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~-~Gi~v~viEr~~~~   78 (572)
                      ..++||+||||||+||++|+.|++ .|++|+||||++.+
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   69 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence            357899999999999999999987 49999999999765

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=9.1e-09  Score=86.56  Aligned_cols=100  Identities=19%  Similarity=0.290  Sum_probs=75.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-.++|||||+.|+=+|..|++.|.+|+|+|+.+.+-                   +.+                     
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l-------------------~~~---------------------   62 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG-------------------ASM---------------------   62 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------SSS---------------------
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc-------------------hhh---------------------
Confidence            3479999999999999999999999999999987652                   110                     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                    + .++-..+.+.+++.|+                   ++++++++++++.
T Consensus        63 ------------------------------d-~ei~~~l~~~l~~~GV-------------------~i~~~~~v~~v~~   92 (122)
T d1v59a2          63 ------------------------------D-GEVAKATQKFLKKQGL-------------------DFKLSTKVISAKR   92 (122)
T ss_dssp             ------------------------------C-HHHHHHHHHHHHHTTC-------------------EEECSEEEEEEEE
T ss_pred             ------------------------------h-hhhHHHHHHHHHhccc-------------------eEEeCCEEEEEEE
Confidence                                          0 1334556677777887                   9999999999998


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEee
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGT  232 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgA  232 (572)
                      ++++..+++...+..++..++++||+|+.|
T Consensus        93 ~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          93 NDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             eCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            877665555433332335668999999875

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=6.8e-09  Score=103.22  Aligned_cols=40  Identities=20%  Similarity=0.381  Sum_probs=36.0

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ++..++||||||+|+|||++|+.++++|.+|+|+||.+..
T Consensus         3 ~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~   42 (330)
T d1neka2           3 LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT   42 (330)
T ss_dssp             CCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGG
T ss_pred             CCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            3456899999999999999999999999999999997644

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.87  E-value=1.3e-08  Score=85.17  Aligned_cols=101  Identities=24%  Similarity=0.348  Sum_probs=79.3

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      ....-+++|||||+.|+=+|..|++.|.+|+|+|+.+.+.                   +++.                 
T Consensus        19 ~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll-------------------~~~d-----------------   62 (119)
T d3lada2          19 QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-------------------PAVD-----------------   62 (119)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------TTSC-----------------
T ss_pred             ccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC-------------------Cccc-----------------
Confidence            3444679999999999999999999999999999887642                   1110                 


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                                                         .++...+.+.+++.|+                   ++++++++++
T Consensus        63 -----------------------------------~ei~~~l~~~l~~~Gv-------------------~i~~~~~v~~   88 (119)
T d3lada2          63 -----------------------------------EQVAKEAQKILTKQGL-------------------KILLGARVTG   88 (119)
T ss_dssp             -----------------------------------HHHHHHHHHHHHHTTE-------------------EEEETCEEEE
T ss_pred             -----------------------------------chhHHHHHHHHHhcCc-------------------eeecCcEEEE
Confidence                                               1334456677778787                   9999999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecC
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG  234 (572)
                      ++.+++++++++.   ++. ..+++.||+|+-|-|
T Consensus        89 i~~~~~~v~v~~~---~~~-~~~~~~~D~vlvAvG  119 (119)
T d3lada2          89 TEVKNKQVTVKFV---DAE-GEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEECSSCEEEEEE---SSS-EEEEEEESEEEECSC
T ss_pred             EEEeCCEEEEEEE---ECC-CCEEEECCEEEEeeC
Confidence            9999999998887   332 234789999999876

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.86  E-value=1.9e-08  Score=83.87  Aligned_cols=97  Identities=18%  Similarity=0.378  Sum_probs=75.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      ...-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-                   +++                   
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il-------------------~~~-------------------   61 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-------------------SGF-------------------   61 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------TTS-------------------
T ss_pred             hcCCeEEEECCCccceeeeeeecccccEEEEEEecceec-------------------ccc-------------------
Confidence            334579999999999999999999999999999987651                   111                   


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                                                      + ..+.+.+.+.+++.|+                   +++++++++++
T Consensus        62 --------------------------------d-~~~~~~l~~~l~~~GI-------------------~i~~~~~v~~i   89 (117)
T d1ebda2          62 --------------------------------E-KQMAAIIKKRLKKKGV-------------------EVVTNALAKGA   89 (117)
T ss_dssp             --------------------------------C-HHHHHHHHHHHHHTTC-------------------EEEESEEEEEE
T ss_pred             --------------------------------c-chhHHHHHHHHHhcCC-------------------EEEcCCEEEEE
Confidence                                            0 1234456677778887                   99999999999


Q ss_pred             eeeCCeEEEEEEeccCCceeeEEEEecEEEe
Q 008258          201 SATDQCINVIASFLKEGKCTERNIQCNILIG  231 (572)
Q Consensus       201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVg  231 (572)
                      +.+++++++++.  .+|  ++.++++|.||-
T Consensus        90 ~~~~~~~~v~~~--~~g--~~~~i~~D~Vlv  116 (117)
T d1ebda2          90 EEREDGVTVTYE--ANG--ETKTIDADYVLV  116 (117)
T ss_dssp             EEETTEEEEEEE--ETT--EEEEEEESEEEE
T ss_pred             EEcCCEEEEEEE--eCC--CEEEEEeEEEEE
Confidence            999999888776  244  345799999984

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=9.9e-09  Score=101.16  Aligned_cols=39  Identities=26%  Similarity=0.298  Sum_probs=34.6

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA   77 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~   77 (572)
                      |++.++||||||+|+|||++|+.+++.  |.+|+|+||.+.
T Consensus         1 m~~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~   41 (311)
T d1kf6a2           1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (311)
T ss_dssp             CEEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            446689999999999999999999987  789999999764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.3e-08  Score=101.05  Aligned_cols=34  Identities=32%  Similarity=0.536  Sum_probs=32.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ||+|||||++||++|+.|+++|++|+||||++.+
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            8999999999999999999999999999998754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=2e-08  Score=83.61  Aligned_cols=94  Identities=19%  Similarity=0.231  Sum_probs=72.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.                   +.+                      
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l-------------------~~~----------------------   60 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-------------------PSF----------------------   60 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-------------------TTS----------------------
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhh-------------------hhc----------------------
Confidence            469999999999999999999999999999987642                   110                      


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ..+-+.+.+.+++.|+                   +++++++++.++.+
T Consensus        61 -----------------------------d-~~~~~~~~~~l~~~GV-------------------~~~~~~~v~~i~~~   91 (116)
T d1gesa2          61 -----------------------------D-PMISETLVEVMNAEGP-------------------QLHTNAIPKAVVKN   91 (116)
T ss_dssp             -----------------------------C-HHHHHHHHHHHHHHSC-------------------EEECSCCEEEEEEC
T ss_pred             -----------------------------c-hhhHHHHHHHHHHCCC-------------------EEEeCCEEEEEEEc
Confidence                                         0 1234456677777787                   89999999999877


Q ss_pred             CCe-EEEEEEeccCCceeeEEEEecEEEeecC
Q 008258          204 DQC-INVIASFLKEGKCTERNIQCNILIGTDG  234 (572)
Q Consensus       204 ~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG  234 (572)
                      +++ +++++.   +|+    ++.+|.||-|-|
T Consensus        92 ~~~~~~v~~~---~g~----~~~~D~vi~a~G  116 (116)
T d1gesa2          92 TDGSLTLELE---DGR----SETVDCLIWAIG  116 (116)
T ss_dssp             TTSCEEEEET---TSC----EEEESEEEECSC
T ss_pred             CCcEEEEEEC---CCC----EEEcCEEEEecC
Confidence            654 555554   564    688999999876

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.80  E-value=1.9e-09  Score=106.60  Aligned_cols=36  Identities=36%  Similarity=0.463  Sum_probs=33.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|+||||||+||++|+.|+++|++|+|||+.+.+
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~   65 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   65 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            358999999999999999999999999999998764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.77  E-value=2.6e-08  Score=83.82  Aligned_cols=98  Identities=16%  Similarity=0.337  Sum_probs=77.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT  122 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~  122 (572)
                      .-+++|||||..|+=+|..|++.|.+|+|+|+.+.+.                   +++                     
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l-------------------~~~---------------------   64 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-------------------PTM---------------------   64 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------TTS---------------------
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC-------------------chh---------------------
Confidence            3479999999999999999999999999999987652                   111                     


Q ss_pred             CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258          123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA  202 (572)
Q Consensus       123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~  202 (572)
                                                    + ..+-..|.+.+++.|+                   ++++++++.+++.
T Consensus        65 ------------------------------d-~~~~~~l~~~l~~~GI-------------------~i~~~~~v~~i~~   94 (123)
T d1dxla2          65 ------------------------------D-AEIRKQFQRSLEKQGM-------------------KFKLKTKVVGVDT   94 (123)
T ss_dssp             ------------------------------C-HHHHHHHHHHHHHSSC-------------------CEECSEEEEEEEC
T ss_pred             ------------------------------h-hcchhhhhhhhhcccc-------------------eEEcCCceEEEEE
Confidence                                          0 1334456777788887                   9999999999999


Q ss_pred             eCCeEEEEEEeccCCceeeEEEEecEEEee
Q 008258          203 TDQCINVIASFLKEGKCTERNIQCNILIGT  232 (572)
Q Consensus       203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgA  232 (572)
                      +++++++++...++|  ++.+++||+|+.|
T Consensus        95 ~~~~~~v~~~~~~~g--~~~~i~~D~vLvA  122 (123)
T d1dxla2          95 SGDGVKLTVEPSAGG--EQTIIEADVVLVS  122 (123)
T ss_dssp             SSSSEEEEEEESSSC--CCEEEEESEEECC
T ss_pred             ccCeEEEEEEECCCC--eEEEEEcCEEEEc
Confidence            999998888755555  3457899998865

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.76  E-value=2.8e-08  Score=83.80  Aligned_cols=103  Identities=21%  Similarity=0.282  Sum_probs=80.0

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccce
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF  118 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~  118 (572)
                      +....-.++|||||..|+=+|..|++.|.+|+|+|+.+.+-+                   .+                 
T Consensus        22 l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~-------------------~~-----------------   65 (125)
T d1ojta2          22 LKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-------------------GA-----------------   65 (125)
T ss_dssp             CCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-------------------TS-----------------
T ss_pred             ccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc-------------------cc-----------------
Confidence            334445899999999999999999999999999999876420                   00                 


Q ss_pred             eeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEE
Q 008258          119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV  198 (572)
Q Consensus       119 ~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~  198 (572)
                                                        + ..+.+.|.+.+++.|+                   ++++++++.
T Consensus        66 ----------------------------------d-~~~~~~l~~~l~~~gv-------------------~~~~~~~v~   91 (125)
T d1ojta2          66 ----------------------------------D-RDLVKVWQKQNEYRFD-------------------NIMVNTKTV   91 (125)
T ss_dssp             ----------------------------------C-HHHHHHHHHHHGGGEE-------------------EEECSCEEE
T ss_pred             ----------------------------------h-hhHHHHHHHHHHHcCc-------------------ccccCcEEE
Confidence                                              0 1334556777777776                   899999999


Q ss_pred             EEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecC
Q 008258          199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (572)
Q Consensus       199 ~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG  234 (572)
                      +++.+++++.+++... +|  ..++++||+|+.|-|
T Consensus        92 ~v~~~~~g~~v~~~~~-~g--~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          92 AVEPKEDGVYVTFEGA-NA--PKEPQRYDAVLVAAG  124 (125)
T ss_dssp             EEEEETTEEEEEEESS-SC--CSSCEEESCEEECCC
T ss_pred             EEEEcCCcEEEEEEeC-CC--CeEEEEcCEEEEecC
Confidence            9999999998888732 22  233689999999988

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.74  E-value=2.2e-08  Score=95.09  Aligned_cols=39  Identities=21%  Similarity=0.470  Sum_probs=34.6

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      |+.++.+|+|||||++||++|+.|+++|.+|+||||...
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~   40 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            345566899999999999999999999999999999753

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=4.5e-09  Score=99.00  Aligned_cols=38  Identities=26%  Similarity=0.396  Sum_probs=35.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.++||||||||++||++|..|+++|.+|+||||++.+
T Consensus         3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            56899999999999999999999999999999999765

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.2e-07  Score=79.89  Aligned_cols=101  Identities=20%  Similarity=0.209  Sum_probs=77.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -+|+|||||+.|+=+|..|++.|.+|+|+|+.+.+.                   +++                      
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-------------------~~~----------------------   61 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-------------------RSF----------------------   61 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------TTS----------------------
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-------------------cch----------------------
Confidence            479999999999999999999999999999986542                   110                      


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ..+.+.+.+.+++.|+                   ++++++++++++.+
T Consensus        62 -----------------------------d-~~~~~~~~~~l~~~Gv-------------------~i~~~~~v~~i~~~   92 (125)
T d3grsa2          62 -----------------------------D-SMISTNCTEELENAGV-------------------EVLKFSQVKEVKKT   92 (125)
T ss_dssp             -----------------------------C-HHHHHHHHHHHHHTTC-------------------EEETTEEEEEEEEE
T ss_pred             -----------------------------h-hHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEEc
Confidence                                         0 1234456677777787                   99999999999999


Q ss_pred             CCeEEEEEEeccCCce--eeEEEEecEEEeecC
Q 008258          204 DQCINVIASFLKEGKC--TERNIQCNILIGTDG  234 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~--~~~~i~ad~vVgADG  234 (572)
                      ++++.+++.....|..  ....+++|+||-|-|
T Consensus        93 ~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          93 LSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             CCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            9998887765444432  234578999998876

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.71  E-value=2.9e-09  Score=97.34  Aligned_cols=41  Identities=22%  Similarity=0.238  Sum_probs=36.1

Q ss_pred             CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      |.+.++||+||||||+|+.+|+.|+|.|.+++|+|+.....
T Consensus         1 m~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~   41 (192)
T d1vdca1           1 LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAND   41 (192)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTT
T ss_pred             CCcccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccc
Confidence            34567899999999999999999999999999999876543

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=7.2e-08  Score=94.41  Aligned_cols=38  Identities=34%  Similarity=0.483  Sum_probs=34.3

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +..++||||||+|+|||++|+.+++.| +|+||||.+..
T Consensus         4 p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~   41 (305)
T d1chua2           4 PEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVT   41 (305)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTT
T ss_pred             CcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCC
Confidence            456799999999999999999999988 99999998754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.67  E-value=8e-08  Score=81.88  Aligned_cols=35  Identities=17%  Similarity=0.406  Sum_probs=32.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            47999999999999999999999999999998765

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.62  E-value=2.1e-07  Score=77.78  Aligned_cols=99  Identities=12%  Similarity=0.196  Sum_probs=72.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -.|+|||||++|+=+|..|++.|.+|.++|+.+.+.                   +++                      
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l-------------------~~~----------------------   61 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-------------------LIK----------------------   61 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------TCC----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh-------------------ccc----------------------
Confidence            479999999999999999999999999999986542                   010                      


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                   + ..+.+.+.+.+++.|+                   +++++++++.++.+
T Consensus        62 -----------------------------d-~~~~~~~~~~l~~~gI-------------------~v~~~~~v~~i~~~   92 (121)
T d1mo9a2          62 -----------------------------D-NETRAYVLDRMKEQGM-------------------EIISGSNVTRIEED   92 (121)
T ss_dssp             -----------------------------S-HHHHHHHHHHHHHTTC-------------------EEESSCEEEEEEEC
T ss_pred             -----------------------------c-cchhhhhhhhhhcccc-------------------EEEcCCEEEEEEec
Confidence                                         0 1223445566677776                   89999999999988


Q ss_pred             CCeEEEEEEeccCCceeeEEEEecEEEeecC
Q 008258          204 DQCINVIASFLKEGKCTERNIQCNILIGTDG  234 (572)
Q Consensus       204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG  234 (572)
                      +++....+.....+  .+.+++||+||-|-|
T Consensus        93 ~~~~~~~~~~~~~~--~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          93 ANGRVQAVVAMTPN--GEMRIETDFVFLGLG  121 (121)
T ss_dssp             TTSBEEEEEEEETT--EEEEEECSCEEECCC
T ss_pred             CCceEEEEEEEeCC--CCEEEEcCEEEEEEC
Confidence            76654433322233  345799999999876

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.5e-07  Score=79.14  Aligned_cols=96  Identities=16%  Similarity=0.257  Sum_probs=75.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258           44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI  119 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~----~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~  119 (572)
                      -.++|||||++|+=+|..|++    .|.+|+++|+.+.+-.                   .                   
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~-------------------~-------------------   79 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-------------------K-------------------   79 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-------------------T-------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc-------------------c-------------------
Confidence            479999999999999998864    5999999998765410                   0                   


Q ss_pred             eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258          120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS  199 (572)
Q Consensus       120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~  199 (572)
                                                     .++ ..+...+.+.+++.|+                   ++++++++.+
T Consensus        80 -------------------------------~~~-~~~~~~~~~~l~~~GV-------------------~~~~~~~V~~  108 (137)
T d1m6ia2          80 -------------------------------ILP-EYLSNWTMEKVRREGV-------------------KVMPNAIVQS  108 (137)
T ss_dssp             -------------------------------TSC-HHHHHHHHHHHHTTTC-------------------EEECSCCEEE
T ss_pred             -------------------------------cCC-HHHHHHHHHHHHhCCc-------------------EEEeCCEEEE
Confidence                                           011 1344567778888887                   9999999999


Q ss_pred             EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCC
Q 008258          200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA  235 (572)
Q Consensus       200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~  235 (572)
                      ++.+++++.+++.   +|+    ++.||+||-|-|.
T Consensus       109 i~~~~~~~~v~l~---~G~----~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         109 VGVSSGKLLIKLK---DGR----KVETDHIVAAVGL  137 (137)
T ss_dssp             EEEETTEEEEEET---TSC----EEEESEEEECCCE
T ss_pred             EEecCCEEEEEEC---CCC----EEECCEEEEeecC
Confidence            9999988887775   664    7999999999883

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=1.1e-07  Score=78.82  Aligned_cols=35  Identities=37%  Similarity=0.609  Sum_probs=32.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            47999999999999999999999999999998654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.54  E-value=1.7e-07  Score=78.59  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            47999999999999999999999999999998654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.54  E-value=2.6e-07  Score=76.72  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||+.|+=+|..|++.|.+|+|+||.+.+
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            46999999999999999999999999999998654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=9.7e-07  Score=73.71  Aligned_cols=98  Identities=15%  Similarity=0.220  Sum_probs=71.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS  123 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~  123 (572)
                      -.++|||||+.|+=+|..|++.|.+|+|+++.+ .-                   +++.                     
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~-~l-------------------~~~D---------------------   59 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------RGFD---------------------   59 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-SS-------------------TTSC---------------------
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEech-hh-------------------ccCC---------------------
Confidence            479999999999999999999999999999642 21                   1110                     


Q ss_pred             CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258          124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT  203 (572)
Q Consensus       124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~  203 (572)
                                                     ..+...+.+.+++.|+                   ++++++++++++..
T Consensus        60 -------------------------------~~~~~~l~~~l~~~Gv-------------------~i~~~~~v~~~~~~   89 (122)
T d1h6va2          60 -------------------------------QDMANKIGEHMEEHGI-------------------KFIRQFVPTKIEQI   89 (122)
T ss_dssp             -------------------------------HHHHHHHHHHHHHTTE-------------------EEEESCEEEEEEEE
T ss_pred             -------------------------------HHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEEe
Confidence                                           1334567777888887                   89999999988754


Q ss_pred             C----CeEEEEEEeccCCceeeEEEEecEEEeecC
Q 008258          204 D----QCINVIASFLKEGKCTERNIQCNILIGTDG  234 (572)
Q Consensus       204 ~----~~v~v~~~~~~~g~~~~~~i~ad~vVgADG  234 (572)
                      +    ..+.+++.  ..++.+....++|.|+-|-|
T Consensus        90 ~~~~~~~~~v~~~--~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          90 EAGTPGRLKVTAK--STNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             ECSTTCEEEEEEE--CTTSCEEEEEEESEEECCCC
T ss_pred             cCCCccEEEEEEE--ECCCCcEEEEECCEEEEEeC
Confidence            3    24555555  23333455678999998866

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.49  E-value=5.7e-07  Score=74.58  Aligned_cols=94  Identities=16%  Similarity=0.252  Sum_probs=70.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      -+|+|||||++|+=+|..|+++   |.+|.|+|+.+.+-                   +++                   
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-------------------~~~-------------------   60 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-------------------RGF-------------------   60 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-------------------TTS-------------------
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-------------------ccc-------------------
Confidence            4799999999999999877654   89999999876541                   110                   


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                                                      + ..+.+.+.+.+++.|+                   +++++++++++
T Consensus        61 --------------------------------d-~~~~~~~~~~l~~~GI-------------------~v~~~~~v~~i   88 (117)
T d1feca2          61 --------------------------------D-SELRKQLTEQLRANGI-------------------NVRTHENPAKV   88 (117)
T ss_dssp             --------------------------------C-HHHHHHHHHHHHHTTE-------------------EEEETCCEEEE
T ss_pred             --------------------------------c-chhhHHHHHHHhhCcE-------------------EEEcCCEEEEE
Confidence                                            1 1344566777888887                   99999999999


Q ss_pred             eeeCCeEE-EEEEeccCCceeeEEEEecEEEeecC
Q 008258          201 SATDQCIN-VIASFLKEGKCTERNIQCNILIGTDG  234 (572)
Q Consensus       201 ~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG  234 (572)
                      +.+++++. +++.   +|+    ++.||+||-|-|
T Consensus        89 ~~~~~g~~~v~~~---~g~----~i~~D~Vi~a~G  116 (117)
T d1feca2          89 TKNADGTRHVVFE---SGA----EADYDVVMLAIG  116 (117)
T ss_dssp             EECTTSCEEEEET---TSC----EEEESEEEECSC
T ss_pred             EECCCCEEEEEEC---CCC----EEEcCEEEEecC
Confidence            98766653 4443   554    689999999987

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.49  E-value=3.6e-07  Score=76.27  Aligned_cols=35  Identities=31%  Similarity=0.542  Sum_probs=32.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            57999999999999999999999999999998764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.49  E-value=3.8e-08  Score=93.15  Aligned_cols=35  Identities=31%  Similarity=0.484  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~   78 (572)
                      .||+||||||+||++|+.|+++|+ +|+||||++.+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~   36 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            489999999999999999999997 69999998765

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.48  E-value=4e-08  Score=91.44  Aligned_cols=37  Identities=38%  Similarity=0.624  Sum_probs=34.5

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+|||+|||||||||++|+.|+|+|.+|+|||+....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            5799999999999999999999999999999997654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=3.2e-07  Score=83.06  Aligned_cols=37  Identities=16%  Similarity=0.385  Sum_probs=33.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +.+.||+||||||+||.+|+.|+|.|.+|+||||...
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            4567999999999999999999999999999998643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=3.8e-08  Score=92.04  Aligned_cols=38  Identities=32%  Similarity=0.576  Sum_probs=35.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|||+||||||||+++|+.|++.|.+|+|||+++..
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            56799999999999999999999999999999987653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=6.9e-08  Score=86.44  Aligned_cols=38  Identities=24%  Similarity=0.452  Sum_probs=34.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ....+|+|||||||||++|+.|+++|++|+|+||.+.+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            33468999999999999999999999999999999876

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=2.8e-07  Score=85.27  Aligned_cols=34  Identities=32%  Similarity=0.499  Sum_probs=32.1

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .|||+||||||||+.+|++.+|.|.+++|||++.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            4899999999999999999999999999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.42  E-value=9.9e-07  Score=73.11  Aligned_cols=92  Identities=18%  Similarity=0.262  Sum_probs=68.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY  120 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~  120 (572)
                      -+|+|||||++|+=+|..|+..   |.+|+|+|+.+.+-                   +++                   
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-------------------~~~-------------------   62 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-------------------RGF-------------------   62 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-------------------TTS-------------------
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-------------------ccc-------------------
Confidence            4799999999999999887765   45799999876541                   110                   


Q ss_pred             eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258          121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV  200 (572)
Q Consensus       121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v  200 (572)
                                                      + ..+.+.+.+.+++.|+                   +++++++++++
T Consensus        63 --------------------------------d-~~~~~~l~~~l~~~GV-------------------~v~~~~~v~~i   90 (117)
T d1aoga2          63 --------------------------------D-HTLREELTKQLTANGI-------------------QILTKENPAKV   90 (117)
T ss_dssp             --------------------------------C-HHHHHHHHHHHHHTTC-------------------EEEESCCEEEE
T ss_pred             --------------------------------c-hHHHHHHHHHHHhcCc-------------------EEEcCCEEEEE
Confidence                                            0 1334566777788887                   99999999999


Q ss_pred             eeeCC-eEEEEEEeccCCceeeEEEEecEEEee
Q 008258          201 SATDQ-CINVIASFLKEGKCTERNIQCNILIGT  232 (572)
Q Consensus       201 ~~~~~-~v~v~~~~~~~g~~~~~~i~ad~vVgA  232 (572)
                      +..++ .+++++.   +|+    +++||.||-|
T Consensus        91 e~~~~~~~~v~~~---~G~----~i~~D~Vi~A  116 (117)
T d1aoga2          91 ELNADGSKSVTFE---SGK----KMDFDLVMMA  116 (117)
T ss_dssp             EECTTSCEEEEET---TSC----EEEESEEEEC
T ss_pred             EEcCCCeEEEEEC---CCc----EEEeCEEEEe
Confidence            87655 4556554   664    6899999865

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.39  E-value=8e-08  Score=89.88  Aligned_cols=38  Identities=26%  Similarity=0.538  Sum_probs=34.9

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|||+||||||+||++|+.|++.|.+|+||||.+.+
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            45799999999999999999999999999999997653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.38  E-value=5.5e-07  Score=75.29  Aligned_cols=35  Identities=26%  Similarity=0.484  Sum_probs=32.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            47999999999999999999999999999987654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.38  E-value=1e-07  Score=88.31  Aligned_cols=37  Identities=38%  Similarity=0.603  Sum_probs=34.3

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .++||+||||||+|+++|+.+++.|.+|+|||+.+..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            4699999999999999999999999999999997654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.1e-07  Score=93.55  Aligned_cols=38  Identities=26%  Similarity=0.482  Sum_probs=34.7

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+.+|+|||||++||+||+.|+++|++|+|+|+++.+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV   40 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            34568999999999999999999999999999998765

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.37  E-value=4.1e-06  Score=83.11  Aligned_cols=39  Identities=23%  Similarity=0.264  Sum_probs=34.2

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~----~Gi~v~viEr~~~~   78 (572)
                      ...++||||||||+|||++|+.|++    .|.+|+||||.+..
T Consensus        18 e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          18 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             eEEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            3557999999999999999999975    69999999997654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.6e-07  Score=84.37  Aligned_cols=32  Identities=34%  Similarity=0.646  Sum_probs=31.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      +||+||||||+|+.+|+.+++.|.+|+|||++
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            79999999999999999999999999999975

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.4e-07  Score=92.10  Aligned_cols=35  Identities=37%  Similarity=0.450  Sum_probs=33.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|||||||||+||++|..|++.|.+|+|+|+++.+
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~i   36 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCc
Confidence            69999999999999999999999999999999876

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.31  E-value=1.5e-07  Score=90.96  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=32.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|+||||||+||++|+.|+++|++|+|||+.+.+
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~   36 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   36 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            5999999999999999999999999999998765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=1.9e-07  Score=87.41  Aligned_cols=36  Identities=25%  Similarity=0.297  Sum_probs=33.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|||+||||||+|+++|+.+++.|.+|+|||+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            689999999999999999999999999999987654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=1.9e-07  Score=86.28  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=31.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      +|||+||||||+|+++|+.+++.|.+|+|||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            689999999999999999999999999999985

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.26  E-value=2.9e-07  Score=85.22  Aligned_cols=35  Identities=40%  Similarity=0.630  Sum_probs=32.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .++||+||||||+|+++|+.++|.|.+|+||||..
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            36899999999999999999999999999999864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.22  E-value=3.8e-07  Score=84.49  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=33.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +.++||+||||||+|+++|+.+++.|.+|+|||+..
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            567999999999999999999999999999999863

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.21  E-value=4.5e-07  Score=82.07  Aligned_cols=36  Identities=25%  Similarity=0.557  Sum_probs=32.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~   78 (572)
                      .-+|+||||||+||++|+.|+++|+ +|+||||.+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            4589999999999999999999999 59999998654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6e-07  Score=82.98  Aligned_cols=34  Identities=29%  Similarity=0.493  Sum_probs=32.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|||+||||||+|+++|+.+++.|.+|+|||+..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            5899999999999999999999999999999854

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.16  E-value=6e-07  Score=89.74  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=35.1

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..++||||||+|++|+++|..|++.|++|+|||+....
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            56799999999999999999999999999999997654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.16  E-value=7.5e-07  Score=83.36  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=35.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ....+|+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            45579999999999999999999999999999998875

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.15  E-value=7.9e-06  Score=74.00  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      +|+|||||++|+.+|..|++.  +.+|+++||.+.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            599999999999999999997  5679999998765

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.12  E-value=4e-07  Score=85.11  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=32.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G-------i~v~viEr~~~~   78 (572)
                      ++|+|||||||||+||..|+++|       ++|+|+||.+.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            58999999999999999999998       579999998775

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.07  E-value=9.9e-07  Score=86.48  Aligned_cols=35  Identities=29%  Similarity=0.491  Sum_probs=33.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++||++|..|++.|++|+|+||++.+
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~i   37 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   37 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            46999999999999999999999999999999876

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.00  E-value=1.6e-06  Score=80.71  Aligned_cols=35  Identities=26%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~   78 (572)
                      .+|+|||||||||+||..|++.  |++|+|||+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4799999999999999999876  7899999998765

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=2e-06  Score=84.07  Aligned_cols=38  Identities=37%  Similarity=0.535  Sum_probs=34.2

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS   79 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~   79 (572)
                      .++||+||||||+||++|+.|+++  |++|+|+|+.+.+.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            368999999999999999999965  99999999987763

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.97  E-value=2.4e-06  Score=81.17  Aligned_cols=33  Identities=18%  Similarity=0.432  Sum_probs=31.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      |||+||||||+|+++|+.+++.|.+|+|+||..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            799999999999999999999999999999853

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.8e-06  Score=78.17  Aligned_cols=38  Identities=13%  Similarity=0.348  Sum_probs=32.6

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~   78 (572)
                      +.+++++|||||++|+.+|..|+++|.  +|++|++.+.+
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            356899999999999999999999876  49999887654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.90  E-value=4e-06  Score=77.96  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      ..|||+||||||||+++|+.+++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            35999999999999999999999986 588998764

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.90  E-value=2.4e-06  Score=80.03  Aligned_cols=37  Identities=22%  Similarity=0.334  Sum_probs=32.9

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~   78 (572)
                      .+|||+||||||||+++|+.+++.|. +|.|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            57999999999999999999999986 58999987643

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.84  E-value=4.5e-06  Score=83.36  Aligned_cols=36  Identities=33%  Similarity=0.576  Sum_probs=33.5

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..++||||||+|++|+++|..|+++|++|+|+|+..
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            457999999999999999999999999999999863

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.82  E-value=7.7e-06  Score=77.58  Aligned_cols=39  Identities=15%  Similarity=0.278  Sum_probs=35.7

Q ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+.++||+||||||+|+.+|+.|++.|.+|+|+|+.+..
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~l   77 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   77 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcc
Confidence            356799999999999999999999999999999997765

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.79  E-value=9.9e-06  Score=81.68  Aligned_cols=38  Identities=32%  Similarity=0.326  Sum_probs=34.3

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF   78 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~   78 (572)
                      ...+|+||||||++|+.+|..|++.| ++|+|||+.+..
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            44699999999999999999999998 899999998653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.78  E-value=3.9e-05  Score=66.97  Aligned_cols=33  Identities=33%  Similarity=0.545  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|+|||||++|+-+|..|++ +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccc
Confidence            69999999999999999975 7899999987654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.77  E-value=7.6e-06  Score=81.54  Aligned_cols=33  Identities=27%  Similarity=0.506  Sum_probs=31.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +||||||+|++|+++|..|++.|++|+|||+..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            699999999999999999999999999999964

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.64  E-value=1.7e-05  Score=79.03  Aligned_cols=35  Identities=34%  Similarity=0.521  Sum_probs=33.0

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .||+||||+|++|+.+|..|++.|.+|+|||+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            58999999999999999999999999999999854

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.56  E-value=4.6e-06  Score=77.65  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=26.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      +|+|||||++||++|+.|+++|.+|+|+|+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            599999999999999999999987665555

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.53  E-value=8.2e-05  Score=66.02  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=29.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|+|||||++|+-+|..|++.|.++.|++..+.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            4699999999999999999999988777765443

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.44  E-value=4.4e-05  Score=76.57  Aligned_cols=37  Identities=30%  Similarity=0.355  Sum_probs=33.2

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~   77 (572)
                      ...+|+||||||++|+++|..|++.+ ++|+|||+.+.
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            34599999999999999999999976 89999999864

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.40  E-value=3.2e-05  Score=71.85  Aligned_cols=33  Identities=18%  Similarity=0.466  Sum_probs=28.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~G---i~v~viEr~~   76 (572)
                      ++|+||||||+|+++|+.+++.|   .+|.|+|+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            58999999999999999988876   5799999853

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.31  E-value=3.8e-05  Score=76.05  Aligned_cols=37  Identities=30%  Similarity=0.367  Sum_probs=33.0

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      ..+|+||||||++|+.+|.-|++. ++|+|||+.+.+.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~~   61 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLPT   61 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCGG
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCCc
Confidence            458999999999999999999986 9999999987543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.18  E-value=0.00011  Score=64.38  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~   78 (572)
                      +|+|||||++|+.+|..|++.|  .+|+|||+++..
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            7999999999999999999987  579999987653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.04  E-value=0.0011  Score=56.73  Aligned_cols=35  Identities=14%  Similarity=0.097  Sum_probs=30.4

Q ss_pred             CCEEEE--CCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIV--GAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIV--GaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -.|+|+  |||..|+-+|..|+++|.+|+|+|+.+.+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            356665  99999999999999999999999987654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.93  E-value=0.00025  Score=62.54  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=31.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||++|+-+|..|++.|.++.|+++.+.+
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            47999999999999999999999998888877654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00093  Score=51.95  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=32.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|+|.|.+|+++|.+|+++|.+|.++|.+..+
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            46999999999999999999999999999987654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.55  E-value=0.00067  Score=59.72  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .|.|||||..|+++|..|+++|++|.+++|.+
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.44  E-value=0.00088  Score=55.76  Aligned_cols=33  Identities=27%  Similarity=0.476  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|+|+|+|..|..+|..|.+.|++|+++|++++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            699999999999999999999999999999864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.018  Score=47.11  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=32.6

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .-+|+|||+|.+.+-.|+.|++..-+|.|+-|++.+
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~   65 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM   65 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc
Confidence            358999999999999999999999999999888665

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0019  Score=55.64  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=31.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|+|||+|-.|.++|..|++.|++|++++|.+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            6999999999999999999999999999997653

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.21  E-value=0.0013  Score=57.42  Aligned_cols=33  Identities=33%  Similarity=0.365  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|+|||||-.|..+|..|++.|++|+|+||...
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            699999999999999999999999999999854

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.052  Score=44.11  Aligned_cols=35  Identities=14%  Similarity=0.433  Sum_probs=32.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||||-+.+=.|+.|++..-+|.++-|++.+
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   62 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF   62 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            48999999999999999999999999999888765

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.019  Score=48.91  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=23.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCE
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKC   69 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v   69 (572)
                      -+|+|||||.+|+-+|..|++.|.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCcc
Confidence            48999999999999999999999764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.90  E-value=0.077  Score=43.30  Aligned_cols=37  Identities=27%  Similarity=0.507  Sum_probs=33.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      .-+|+|||||-+.+-.|+.|++.--+|.|+-|++.++
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~r   70 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR   70 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccc
Confidence            3589999999999999999999999999998887653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.87  E-value=0.004  Score=53.13  Aligned_cols=40  Identities=15%  Similarity=0.208  Sum_probs=34.4

Q ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      +|+..+.+|.|||+|-+|.++|+.|+..++ +++++|.++.
T Consensus         2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           2 ALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            355677899999999999999999999886 6999997764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.70  E-value=0.0032  Score=52.16  Aligned_cols=33  Identities=18%  Similarity=0.349  Sum_probs=31.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +++|||+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            589999999999999999999999999999864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.21  E-value=0.006  Score=54.49  Aligned_cols=32  Identities=25%  Similarity=0.273  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .|.|||.|-+||.+|..|++.|++|..+|.++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            59999999999999999999999999999764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.12  E-value=0.0084  Score=50.50  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=32.0

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      ..+.+|.|||+|-+|.++|+.|+..|+  +++++|+.+.
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence            345689999999999999999999985  6999997643

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.10  E-value=0.0066  Score=53.51  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=30.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||||.-|...|..++++|++|+++|+.+.
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            699999999999999999999999999998643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0068  Score=53.72  Aligned_cols=33  Identities=15%  Similarity=0.370  Sum_probs=31.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||||.-|...|..++++|++|+++|+.+.
T Consensus         6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            799999999999999999999999999998764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.06  E-value=0.0045  Score=56.61  Aligned_cols=38  Identities=13%  Similarity=0.128  Sum_probs=32.9

Q ss_pred             CCcEEEEecccccCCCCCCCCc-hhHHHHHHHHHHHHHH
Q 008258          358 YNQIILAGDACHRFPPAGGFGM-NTGVQDAHNLAWKIAS  395 (572)
Q Consensus       358 ~grV~LiGDAAH~~~P~~G~G~-n~ai~DA~~La~~La~  395 (572)
                      .+||+++|||+|.+.|..++|+ ++|+++|..|+..|..
T Consensus       306 ~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~  344 (347)
T d1b5qa1         306 VGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK  344 (347)
T ss_dssp             BTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            5899999999999999999984 7788888888887754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.97  E-value=0.011  Score=51.40  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      ..+|+|+|||.+|+.+|....+.|-.|.++|.+...
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~   64 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT   64 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH
Confidence            358999999999999999999999999999988764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.96  E-value=0.013  Score=50.46  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=30.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|+|+.|++++..++..|.+|+++++++.
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            3699999999999999888888999999998765

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.84  E-value=0.012  Score=50.41  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=31.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ..+|+|+|||.+|+.++....+.|..|.++|.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            4689999999999999999999999999999763

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.56  E-value=0.022  Score=48.17  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~~   78 (572)
                      +|+|||||-+|+=+|..|.|+|.+ |++++|++..
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            699999999999999999999976 7799887654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.47  E-value=0.0095  Score=52.57  Aligned_cols=32  Identities=25%  Similarity=0.461  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|+|+|||--|.++|..|++.|.+|.++.|++
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            69999999999999999999999999998764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.42  E-value=0.016  Score=49.59  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|.|||.|-.|.++|..|++.|++|.++||++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            59999999999999999999999999999864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.37  E-value=0.027  Score=47.36  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=31.3

Q ss_pred             CCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVG-aGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|.||| .|.-|..+|..|++.|++|.++|+...
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            4899999 699999999999999999999998754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.36  E-value=0.013  Score=50.34  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=29.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|+|+|+|+.|+.++..++..|.+|+++|+.+.
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            699999999999999999999999999997643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.015  Score=50.24  Aligned_cols=33  Identities=30%  Similarity=0.623  Sum_probs=29.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .|+|+|+||.|+.++..+...|. +|+++|+++.
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            59999999999999999999998 6888887643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.20  E-value=0.015  Score=49.79  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=29.7

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -.|+|+|+|+.|++++..++..|.+|+++++.+
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            369999999999999999999999999998764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.15  E-value=0.016  Score=50.48  Aligned_cols=32  Identities=31%  Similarity=0.410  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|.|||||.-|.++|..|++.|.+|.++.|..
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~   33 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEF   33 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            69999999999999999999999999997643

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.13  E-value=0.02  Score=45.69  Aligned_cols=34  Identities=29%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .-.|+|||||.+|..-|..|.+.|.+|+|+....
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            4589999999999999999999999999997543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.09  E-value=0.037  Score=47.05  Aligned_cols=35  Identities=17%  Similarity=0.340  Sum_probs=31.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      +.+|.|||+|-+|.++|+.|...|+  +++++|+++.
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~   56 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLED   56 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            4689999999999999999999997  7999998743

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.53  E-value=0.035  Score=55.82  Aligned_cols=39  Identities=10%  Similarity=0.288  Sum_probs=35.8

Q ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258           41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS   79 (572)
Q Consensus        41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~   79 (572)
                      +.++||||+|-|..=+.+|.+|++.|.+|+-+||++.-.
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYG   42 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCC
Confidence            457999999999999999999999999999999998653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.53  E-value=0.03  Score=48.46  Aligned_cols=33  Identities=21%  Similarity=0.258  Sum_probs=29.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      -.|+|+|+|+.|++++.+++..|. +|+++|+.+
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            479999999999999999999997 689998764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.43  E-value=0.018  Score=48.47  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=29.4

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK   74 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr   74 (572)
                      .-.|||||||.+|+.-|..|.+.|.+|+|+..
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            35799999999999999999999999999953

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.29  E-value=0.025  Score=49.22  Aligned_cols=34  Identities=32%  Similarity=0.539  Sum_probs=29.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      -.|+|+|+||.|+.+...+...|. +|+++|+++.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccc
Confidence            369999999999999999999998 6899987543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.28  E-value=0.024  Score=49.28  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=29.8

Q ss_pred             CEEEE-CCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIV-GAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIV-GaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|| |+|--|.++|..|++.|++|+|..|+++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999 6799999999999999999999998753

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.17  E-value=0.034  Score=46.32  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=29.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      +|.|||+|-+|.++|+.|++.++ +++++|..+.
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            69999999999999999999886 7999997654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.034  Score=47.63  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -.|+|+|+|+.|+.++..+...|.+++++++.+.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            3699999999999999999889999999987654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.84  E-value=0.038  Score=46.36  Aligned_cols=35  Identities=29%  Similarity=0.481  Sum_probs=30.6

Q ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           42 AVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        42 ~~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      ...+|.|||||-+|.++|+.|+..|+  +++++|..+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            34579999999999999999999986  699999765

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.75  E-value=0.037  Score=46.28  Aligned_cols=33  Identities=30%  Similarity=0.500  Sum_probs=29.2

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           45 PVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGa-GpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      +|.|||| |-+|.++|+.|+..|+  +++++|..+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            5999996 9999999999999995  7999998644

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.65  E-value=0.057  Score=45.78  Aligned_cols=35  Identities=20%  Similarity=0.459  Sum_probs=30.5

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      ..+|.|||+|-+|.++|+.|...|+  +++++|+++.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~   55 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTD   55 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCch
Confidence            3579999999999999999999986  6999997643

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.63  E-value=0.033  Score=49.08  Aligned_cols=32  Identities=25%  Similarity=0.475  Sum_probs=28.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||.|=+||.+|..|++ |++|+.+|-++.
T Consensus         2 kI~ViGlG~vGl~~a~~~a~-g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHHC-CCcEEEEECCHH
Confidence            59999999999999999985 999999997754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=92.61  E-value=0.055  Score=44.94  Aligned_cols=33  Identities=21%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      +|.|||||-+|.++|+.|+..|+  +++++|..+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            59999999999999999999985  7999998764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.083  Score=41.80  Aligned_cols=36  Identities=19%  Similarity=0.459  Sum_probs=32.8

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+.|.|+|||--|-.+|++..+.|+++.++|..+..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            357999999999999999999999999999987664

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.59  E-value=0.054  Score=42.58  Aligned_cols=35  Identities=20%  Similarity=0.013  Sum_probs=30.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      -+|+|||+|.+|.-.|..|++.+-+++++-+++..
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~   67 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG   67 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCcc
Confidence            58999999999999999999998887777776554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.06  Score=45.20  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|+|+|.|..|..++-.|.+.|.+++|+|..+.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            599999999999999999999999999998764

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=92.34  E-value=0.072  Score=44.24  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=29.3

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~   78 (572)
                      -+|.|||+|-+|.++|+.|...++  +++++|..+..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            379999999999999999999986  69999987754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.27  E-value=0.074  Score=44.62  Aligned_cols=34  Identities=21%  Similarity=0.476  Sum_probs=29.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .+|.|||+|-+|.++|+.|.+.++ +++++|..+.
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            579999999999999999999886 5889997654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.17  E-value=0.056  Score=46.60  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~   77 (572)
                      .|+|+|+|+.|++++..+...|.+ |++.|..+.
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            699999999999999999999985 667777654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.14  E-value=0.044  Score=46.65  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -.|+|+|+|+.|++++..++..|.+|.++++.+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            369999999999999999999999999988654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.94  E-value=0.061  Score=46.45  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=30.1

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~   78 (572)
                      .|+|+|+|+.|+.+...++..|. +|+++|..++.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            49999999999999999999995 69999987653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.77  E-value=0.078  Score=44.07  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=29.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      .+|.|||+|-+|.++|+.|...|+  +++++|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            369999999999999999999987  699999664

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.60  E-value=0.055  Score=47.62  Aligned_cols=33  Identities=36%  Similarity=0.462  Sum_probs=27.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      -.|+|+|+||.|++++..++..|. +|+++|..+
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            479999999999999999888887 677887654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.29  E-value=0.074  Score=44.38  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=28.3

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      +|.|||+|-+|.++|+.|...|+  +++++|...
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            68999999999999999999885  688998754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.21  E-value=0.092  Score=44.91  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .+|+|+|+|-++-+.+.+|.+.|.++.|+.|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            579999999999999999999999999998864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=91.14  E-value=0.11  Score=44.57  Aligned_cols=34  Identities=12%  Similarity=0.307  Sum_probs=31.8

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      -+|-|||-|.-|..+|..|.+.|++|.+++|.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.72  E-value=0.084  Score=45.41  Aligned_cols=33  Identities=18%  Similarity=0.241  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .|+|+|+|+.|+++...++..|. +|+++|..+.
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            59999999999999999999997 5778887654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.39  E-value=0.12  Score=44.42  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=31.1

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      ++|-|||-|.-|..+|..|.+.|++|.+++|.++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            3699999999999999999999999999998654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.33  E-value=0.11  Score=43.14  Aligned_cols=33  Identities=18%  Similarity=0.127  Sum_probs=28.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~   77 (572)
                      +|.|||+|-+|.++|+.|+..|+  +++++|..++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   36 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence            69999999999999999998886  5999997643

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.29  E-value=0.092  Score=43.65  Aligned_cols=31  Identities=29%  Similarity=0.523  Sum_probs=27.4

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCC
Q 008258           45 PVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKN   75 (572)
Q Consensus        45 dVlIVGa-GpaGL~~A~~La~~Gi--~v~viEr~   75 (572)
                      +|.|||| |-+|.++|+.|+..|+  +++++|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            5899996 9999999999999986  48889864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.07  E-value=0.09  Score=44.51  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|-|||-|.-|..+|..|.+.|++|.+++|.+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            589999999999999999999999999998654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.96  E-value=0.11  Score=44.63  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=26.5

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEE-EcCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSV-LEKN   75 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~v-iEr~   75 (572)
                      -.|+|+|+|+.|++++..++..|.++++ .|++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            3699999999999999999999987654 4543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.94  E-value=0.12  Score=42.66  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=28.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      +|.|||+|-+|.++|+.|+..++  +++++|..+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            69999999999999999998875  689999664

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=89.89  E-value=0.16  Score=43.27  Aligned_cols=34  Identities=18%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      +.+|+|+|+|-++-+.+.+|.+.|+ ++.|+.|..
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            3579999999999999999999998 689998764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.2  Score=40.33  Aligned_cols=56  Identities=29%  Similarity=0.348  Sum_probs=40.6

Q ss_pred             ccCCEEEECCCH-----------HHHHHHHHHHhCCCCEEEEcCCCCCCC----CCCeeeeChhHHHHHHh
Q 008258           42 AVVPVLIVGAGP-----------VGLVLSILLTKLGIKCSVLEKNKAFST----HPQAHFINNRYALVFRK   97 (572)
Q Consensus        42 ~~~dVlIVGaGp-----------aGL~~A~~La~~Gi~v~viEr~~~~~~----~~~a~~l~~rt~e~l~~   97 (572)
                      ..-.|+|+|+||           ++.-++.+|++.|++++++.-+|..-.    ..--.++.|=+.|.+.+
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d~aD~lYfePlt~e~v~~   76 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRK   76 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChhhcceeeeecCCHHHHHH
Confidence            335799999998           788999999999999999999887621    11234455555554443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.51  E-value=0.13  Score=46.84  Aligned_cols=34  Identities=32%  Similarity=0.471  Sum_probs=30.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      +..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            4689999999999999999999999 588898654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.22  E-value=0.012  Score=53.46  Aligned_cols=35  Identities=17%  Similarity=0.175  Sum_probs=32.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .+|+|||||.+|+-+|..|++.|.+|+|+++++..
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~  215 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRETI  215 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEecccc
Confidence            57999999999999999999999999999998764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.56  E-value=0.18  Score=42.70  Aligned_cols=32  Identities=34%  Similarity=0.395  Sum_probs=27.7

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~   76 (572)
                      .|+|||.|.-|.++|..|.+.|+  +|..+|+++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            49999999999999999999996  567788753

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.55  E-value=0.29  Score=38.82  Aligned_cols=54  Identities=13%  Similarity=0.178  Sum_probs=39.7

Q ss_pred             cCCEEEECCCH-----------HHHHHHHHHHhCCCCEEEEcCCCCCCCC----CCeeeeChhHHHHHH
Q 008258           43 VVPVLIVGAGP-----------VGLVLSILLTKLGIKCSVLEKNKAFSTH----PQAHFINNRYALVFR   96 (572)
Q Consensus        43 ~~dVlIVGaGp-----------aGL~~A~~La~~Gi~v~viEr~~~~~~~----~~a~~l~~rt~e~l~   96 (572)
                      .-.|+|+|+||           ++.-++.+|++.|++++++.-+|+.-..    .--.++-|=+.|.+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d~aD~lYfeplt~e~v~   72 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVL   72 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHH
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChhhcCceEEccCCHHHHH
Confidence            34799999997           7888999999999999999999876321    123445555555443

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.16  E-value=0.2  Score=42.83  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=28.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .|+|+|+|+.|++++..++..|. +|++++..+.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            49999999999999999999985 6888887654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.07  E-value=0.22  Score=42.35  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~   77 (572)
                      .|+|+|+|+.|++++..+++.|- +|+++++.+.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            49999999999999999999977 4777887654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.07  E-value=0.2  Score=41.69  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=30.4

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      +|.|||.|-.|..+|..|+++|++++++++.+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            589999999999999999999999999987654

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.98  E-value=1.8  Score=38.09  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=29.0

Q ss_pred             CCEEEECCCHHHHHHHHHHHhC--------------------CC-CEEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKL--------------------GI-KCSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~--------------------Gi-~v~viEr~~~~   78 (572)
                      -+|+|||+|=+++=+|..|.|.                    |+ +|.++.|+...
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            4899999999999999999883                    65 48888887643

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.38  E-value=0.21  Score=42.10  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=30.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|.|||-|--|...|..|.++|++|.++||.+.
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            599999999999999999999999999998743

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.33  E-value=0.28  Score=35.82  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      .|.|+|||==|-+++.+-.+.|+++.+++..+..
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            4899999999999999999999999999976543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.08  E-value=0.32  Score=44.89  Aligned_cols=36  Identities=31%  Similarity=0.323  Sum_probs=31.8

Q ss_pred             cCCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.+|+|+|| |-.|..++..|.++|++|+++.|.+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~   39 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV   39 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc
Confidence            457999997 999999999999999999999886553

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.98  E-value=0.26  Score=43.09  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=30.6

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        45 dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +|+|.|| |..|..++..|.++|++|+++.|++..
T Consensus         5 kIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~   39 (205)
T d1hdoa_           5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (205)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhh
Confidence            5999996 999999999999999999999887653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=86.96  E-value=0.27  Score=40.52  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=27.2

Q ss_pred             CEEEEC-CCHHHHHHHHHHHhCCC--CEEEEcCC
Q 008258           45 PVLIVG-AGPVGLVLSILLTKLGI--KCSVLEKN   75 (572)
Q Consensus        45 dVlIVG-aGpaGL~~A~~La~~Gi--~v~viEr~   75 (572)
                      +|.||| +|-+|.++|+.|...|+  +++++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            699999 69999999999999986  58888863

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=86.85  E-value=0.27  Score=42.31  Aligned_cols=35  Identities=17%  Similarity=0.369  Sum_probs=30.6

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF   78 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~~   78 (572)
                      -+|+|+|+|-+|-+++.+|.+.|.+ +.|+.|.+..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~   54 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF   54 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHH
Confidence            4799999999999999999999984 8888887553

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.09  E-value=0.34  Score=44.38  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=32.6

Q ss_pred             cCCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258           43 VVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKAF   78 (572)
Q Consensus        43 ~~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~~~   78 (572)
                      +.+|+|.|| |-.|..++..|.+.|++|+++.|.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            468999998 999999999999999999999997654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.54  E-value=0.32  Score=41.24  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=26.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      -.|+|+|+|+.|+.++..++..|. .|+++++.+
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            369999999999999999988886 556677654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=85.40  E-value=0.38  Score=40.37  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=29.3

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN   75 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~   75 (572)
                      ...|+|||+|-.|-..|..|..+|.+ ++|+-|.
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            45799999999999999999999985 8888765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.20  E-value=0.23  Score=42.02  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=27.2

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           45 PVLIVGA-GPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGa-GpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      .|+|+|+ |+.|+.++..++..|. +|.++++++
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             EEEEEeccccceeeeeecccccccccccccccch
Confidence            5999995 9999999999988885 788888764

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.87  E-value=0.38  Score=39.76  Aligned_cols=31  Identities=32%  Similarity=0.532  Sum_probs=25.4

Q ss_pred             CEEEEC-CCHHHHHHHHHHHh-CC--CCEEEEcCC
Q 008258           45 PVLIVG-AGPVGLVLSILLTK-LG--IKCSVLEKN   75 (572)
Q Consensus        45 dVlIVG-aGpaGL~~A~~La~-~G--i~v~viEr~   75 (572)
                      +|.||| +|-+|.++|+.|+. .+  -+++++|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            699999 59999999998864 34  579999864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.35  E-value=0.32  Score=37.06  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=32.1

Q ss_pred             CCCCccCCEEEECCCHHHHHH-HHHHHhCCCCEEEEcCCC
Q 008258           38 VSNEAVVPVLIVGAGPVGLVL-SILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        38 ~~~~~~~dVlIVGaGpaGL~~-A~~La~~Gi~v~viEr~~   76 (572)
                      +++.....|-+||-|-+|+++ |..|.++|++|.--|+..
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            344455679999999999766 999999999999999764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.25  E-value=0.51  Score=41.43  Aligned_cols=50  Identities=6%  Similarity=0.035  Sum_probs=35.2

Q ss_pred             hHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCe--EEEEEEeccCCceeeEEEEecEEEe
Q 008258          156 KLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC--INVIASFLKEGKCTERNIQCNILIG  231 (572)
Q Consensus       156 ~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~--v~v~~~~~~~g~~~~~~i~ad~vVg  231 (572)
                      .+.+.|.+.+++.|+                   +|+++++|++|..++++  +++...   +|.    +++||.||.
T Consensus       237 ~l~~~l~~~~~~~G~-------------------~i~~~~~V~~I~~~~~~~~v~~v~~---~g~----~~~ad~VI~  288 (297)
T d2bcgg1         237 ELPQGFARLSAIYGG-------------------TYMLDTPIDEVLYKKDTGKFEGVKT---KLG----TFKAPLVIA  288 (297)
T ss_dssp             HHHHHHHHHHHHTTC-------------------EEECSCCCCEEEEETTTTEEEEEEE---TTE----EEECSCEEE
T ss_pred             HHHHHHHHHHHhcCC-------------------EEEeCCEeeEEEEECCCCEEEEEEc---CCE----EEECCEEEE
Confidence            355566777777776                   89999999999766543  443333   453    799999985

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.04  E-value=0.28  Score=40.96  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.9

Q ss_pred             cCCEEEECC-CHHHHHHHHHHHhCCC
Q 008258           43 VVPVLIVGA-GPVGLVLSILLTKLGI   67 (572)
Q Consensus        43 ~~dVlIVGa-GpaGL~~A~~La~~Gi   67 (572)
                      ..+|.|||| |.+|.++|+.|+..++
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccc
Confidence            458999997 9999999999998753

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.85  E-value=0.51  Score=39.60  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=30.5

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      .|+|||-|..|--.|..|+..|.+|+++|..|
T Consensus        26 ~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          26 VAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            59999999999999999999999999999875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.48  E-value=0.52  Score=39.85  Aligned_cols=32  Identities=25%  Similarity=0.289  Sum_probs=26.2

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~   76 (572)
                      .|+|+|+|+.|+++...++..|.+ |.+.++.+
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            489999999999999999999976 55565543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.46  E-value=0.37  Score=43.84  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=30.5

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      ++|+|.|| |-.|..++..|.++|++|+.++|..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46999998 9999999999999999999999865

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=82.22  E-value=0.61  Score=39.76  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             CccCCEEEECC-CHHHHHHHHHHHhCC
Q 008258           41 EAVVPVLIVGA-GPVGLVLSILLTKLG   66 (572)
Q Consensus        41 ~~~~dVlIVGa-GpaGL~~A~~La~~G   66 (572)
                      ....+|.|+|| |..|.++|+.|++..
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~   48 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGE   48 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCc
Confidence            34468999996 999999999999853

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.08  E-value=0.23  Score=49.00  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=30.7

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK   76 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~   76 (572)
                      +.+|+|||+|-.|..+|..|++.|+ ++.|+|.+.
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4689999999999999999999999 689998654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.98  E-value=0.52  Score=40.14  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=29.2

Q ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .-+|+|+|+|-++-+++.+|++.| ++.|+.|...
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~   51 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVE   51 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhh
Confidence            347999999999999999998888 8999988643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.83  E-value=0.59  Score=40.33  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             cCCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           43 VVPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        43 ~~dVlIVG-aGpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .-.|+|.| +|-.|..+|..|+++|.+|+++.|+.+
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            34688998 599999999999999999999998853

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.65  E-value=0.29  Score=40.94  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             CCEEEECC-CHHHHHHHHHHHhCCC
Q 008258           44 VPVLIVGA-GPVGLVLSILLTKLGI   67 (572)
Q Consensus        44 ~dVlIVGa-GpaGL~~A~~La~~Gi   67 (572)
                      .+|.|||| |.+|.++|+.|+..++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~   28 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSV   28 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTT
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHh
Confidence            57999996 9999999999987643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.54  E-value=0.52  Score=39.93  Aligned_cols=31  Identities=32%  Similarity=0.423  Sum_probs=27.0

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCC
Q 008258           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKN   75 (572)
Q Consensus        45 dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~   75 (572)
                      .|+|+|| |++|+++...+...|.+|+++.+.
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEEeccccccccccccccccCccccccccc
Confidence            5999996 999999888888889999888754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.70  E-value=0.66  Score=38.39  Aligned_cols=32  Identities=13%  Similarity=0.106  Sum_probs=29.6

Q ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      +|.|||+|--|.++|..|.+.|.++.+.+|.+
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            58999999999999999999999999998864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=80.44  E-value=0.61  Score=39.01  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258           44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK   76 (572)
Q Consensus        44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~   76 (572)
                      -.|+|+|-|.+|--+|..|+..|.+|.|.|.+|
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            369999999999999999999999999999886

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.43  E-value=0.44  Score=40.36  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=27.9

Q ss_pred             CEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258           45 PVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNKA   77 (572)
Q Consensus        45 dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~~   77 (572)
                      .|+|.|| |+.|+++...+...|.+|+.+++.+.
T Consensus        30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~   63 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE   63 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             EEEEEeccccchhhhhhhhccccccccccccccc
Confidence            4888896 99999998888888999998887643